0s autopkgtest [03:37:45]: starting date and time: 2026-02-07 03:37:45+0000
  0s autopkgtest [03:37:45]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [03:37:45]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.b6x0m8gr/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:rdkit,src:aegean,src:apbs,src:binutils,src:boost1.90,src:booth,src:bornagain,src:ccls,src:cp2k,src:createrepo-c,src:dolfinx-mpc,src:gcc-snapshot,src:gdm3,src:gnuradio,src:hkl,src:hmmer,src:iptables,src:lammps,src:libadwaita-1,src:libhandy-1,src:libinsane,src:libixion,src:liborcus,src:libreoffice,src:libsbml,src:link-grammar,src:linux-aws,src:linux-azure,src:linux-gcp,src:linux-oracle,src:linux,src:mosquitto,src:open-iscsi,src:opencamlib,src:orthanc-python,src:psychopy,src:pyside2,src:python-pyvista,src:python3-defaults,src:rumur,src:trojan,src:wmanager,src:zxing-cpp --apt-upgrade coot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=rdkit/202503.6-3ubuntu4 aegean/0.16.0+dfsg-5build1 apbs/3.4.1-7build1 binutils/2.45.90.20260201-1ubuntu1 boost1.90/1.90.0-1ubuntu2 booth/1.2-3ubuntu2 bornagain/23.0-5build1 ccls/0.20250815-0ubuntu1 cp2k/2025.2-3 createrepo-c/1.2.1-2build1 dolfinx-mpc/0.10.1-1build1 gcc-snapshot/1:20260203-0ubuntu3 gdm3/50~alpha.1-0ubuntu1 gnuradio/3.10.12.0-5.1build2 hkl/5.1.4-1 hmmer/3.4+dfsg-3 iptables/1.8.11-2ubuntu3 lammps/20251210+dfsg-1build1 libadwaita-1/1.8.0-1ubuntu3 libhandy-1/1.8.3-3build1 libinsane/1.0.10-4build1 libixion/0.20.0-6ubuntu1 liborcus/0.21.0-3 libreoffice/4:25.8.4~rc2-0ubuntu2 libsbml/5.20.5+dfsg-1build1 link-grammar/5.13.0+dfsg-1build1 linux-aws/6.19.0-1002.2 linux-azure/6.19.0-1001.1 linux-gcp/6.19.0-1001.1 linux-oracle/6.19.0-1001.1 linux/6.19.0-3.3 mosquitto/2.0.22-5 open-iscsi/2.1.11-3ubuntu2 opencamlib/2023.01.11-6 orthanc-python/7.0+ds-1build2 psychopy/2023.2.4+dfsg-4 pyside2/5.15.18-1build1 python-pyvista/0.46.5-7 python3-defaults/3.14.2-1 rumur/2025.08.31-1 trojan/1.16.0-1.1build4 wmanager/0.3.1-3build1 zxing-cpp/2.3.0-5' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-1.secgroup --name adt-resolute-amd64-coot-20260207-033744-juju-7f2275-prod-proposed-migration-environment-20-7c5a019c-b4b5-4037-8e9e-3f2efd50ca16 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-amd64-coot-20260207-033744-juju-7f2275-prod-proposed-migration-environment-20-7c5a019c-b4b5-4037-8e9e-3f2efd50ca16 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 78s autopkgtest [03:39:03]: testbed dpkg architecture: amd64
 78s autopkgtest [03:39:03]: testbed apt version: 3.1.14
 78s autopkgtest [03:39:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 79s autopkgtest [03:39:04]: testbed release detected to be: None
 79s autopkgtest [03:39:04]: updating testbed package index (apt update)
 79s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 80s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 80s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 80s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 80s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB]
 80s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [206 kB]
 80s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1705 kB]
 81s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [36.7 kB]
 81s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [276 kB]
 82s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [195 kB]
 82s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6860 B]
 82s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B]
 82s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB]
 82s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B]
 82s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1608 kB]
 84s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [585 kB]
 84s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [37.1 kB]
 84s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5456 B]
 84s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [31.0 kB]
 84s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B]
 85s Fetched 4913 kB in 5s (996 kB/s)
 86s Reading package lists...
 86s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 86s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 86s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 86s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 87s Reading package lists...
 87s Reading package lists...
 87s Building dependency tree...
 87s Reading state information...
 87s Calculating upgrade...
 87s The following packages were automatically installed and are no longer required:
 87s   libpython3.13 libpython3.13-minimal libpython3.13-stdlib python3.13
 87s   python3.13-minimal
 87s Use 'sudo apt autoremove' to remove them.
 87s The following NEW packages will be installed:
 87s   libpython3.14 libpython3.14-minimal libpython3.14-stdlib python3.14
 87s   python3.14-minimal
 87s The following packages will be upgraded:
 87s   amd64-microcode apt binutils binutils-common binutils-x86-64-linux-gnu
 87s   bpftool busybox-initramfs busybox-static dmsetup findutils iptables less
 87s   libapt-pkg7.0 libattr1 libbinutils libctf-nobfd0 libctf0 libdevmapper1.02.1
 87s   libdrm-amdgpu1 libdrm-common libdrm2 libgpm2 libgprofng0 libip4tc2 libip6tc2
 87s   libkeyutils1 libmaxminddb0 libnpth0t64 libpython3-stdlib libsensors-config
 87s   libsensors5 libsframe3 libxtables12 linux-perf linux-tools-common mawk patch
 87s   pollinate python3 python3-gdbm python3-linkify-it python3-markdown-it
 87s   python3-minimal python3-referencing sed tar
 87s 46 upgraded, 5 newly installed, 0 to remove and 0 not upgraded.
 87s Need to get 25.2 MB of archives.
 87s After this operation, 32.7 MB of additional disk space will be used.
 87s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 88s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 88s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 88s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
 89s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB]
 89s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.14.2-1 [28.2 kB]
 89s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.14.2-1 [22.9 kB]
 89s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
 90s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB]
 90s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.14.2-1 [10.9 kB]
 90s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 90s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 90s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 90s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 90s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 90s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 90s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 90s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 90s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
 90s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
 90s Get:21 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
 90s Get:22 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
 90s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 90s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 91s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 91s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 91s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 91s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 91s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 91s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 91s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 91s Get:32 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.14.2-1 [11.1 kB]
 91s Get:33 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libgprofng0 amd64 2.45.90.20260201-1ubuntu1 [899 kB]
 91s Get:34 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libctf0 amd64 2.45.90.20260201-1ubuntu1 [100 kB]
 91s Get:35 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libctf-nobfd0 amd64 2.45.90.20260201-1ubuntu1 [102 kB]
 91s Get:36 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.45.90.20260201-1ubuntu1 [1157 kB]
 91s Get:37 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libbinutils amd64 2.45.90.20260201-1ubuntu1 [600 kB]
 91s Get:38 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 binutils amd64 2.45.90.20260201-1ubuntu1 [224 kB]
 91s Get:39 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 binutils-common amd64 2.45.90.20260201-1ubuntu1 [222 kB]
 91s Get:40 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libsframe3 amd64 2.45.90.20260201-1ubuntu1 [20.6 kB]
 91s Get:41 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
 92s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 92s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 92s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 92s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
 92s Get:46 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
 93s Get:47 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
 93s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 93s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 93s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 93s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 93s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 93s Fetched 25.2 MB in 5s (4627 kB/s)
 93s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 93s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 93s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 93s Setting up findutils (4.10.0-3build2) ...
 93s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 93s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 93s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 93s Setting up sed (4.9-2build3) ...
 93s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 93s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 93s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 93s Setting up tar (1.35+dfsg-3.1build2) ...
 93s Selecting previously unselected package libpython3.14-minimal:amd64.
 93s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 93s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_amd64.deb ...
 93s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ...
 93s Selecting previously unselected package python3.14-minimal.
 93s Preparing to unpack .../python3.14-minimal_3.14.2-1_amd64.deb ...
 93s Unpacking python3.14-minimal (3.14.2-1) ...
 93s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ...
 93s Setting up python3.14-minimal (3.14.2-1) ...
 94s (Reading database ... 
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(Reading database ... 84299 files and directories currently installed.)
 94s Preparing to unpack .../python3-minimal_3.14.2-1_amd64.deb ...
 94s Unpacking python3-minimal (3.14.2-1) over (3.13.9-3) ...
 94s Setting up python3-minimal (3.14.2-1) ...
 94s (Reading database ... 
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(Reading database ... 84299 files and directories currently installed.)
 94s Preparing to unpack .../python3_3.14.2-1_amd64.deb ...
 94s running python pre-rtupdate hooks for python3.14...
 94s Unpacking python3 (3.14.2-1) over (3.13.9-3) ...
 94s Selecting previously unselected package libpython3.14-stdlib:amd64.
 94s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_amd64.deb ...
 94s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ...
 94s Selecting previously unselected package python3.14.
 94s Preparing to unpack .../python3.14_3.14.2-1_amd64.deb ...
 94s Unpacking python3.14 (3.14.2-1) ...
 95s Preparing to unpack .../libpython3-stdlib_3.14.2-1_amd64.deb ...
 95s Unpacking libpython3-stdlib:amd64 (3.14.2-1) over (3.13.9-3) ...
 95s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ...
 95s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ...
 95s Setting up libattr1:amd64 (1:2.5.2-3build2) ...
 95s (Reading database ... 
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 95s Preparing to unpack .../00-mawk_1.3.4.20260129-1_amd64.deb ...
 95s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ...
 95s Preparing to unpack .../01-libapt-pkg7.0_3.1.15_amd64.deb ...
 95s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ...
 95s Preparing to unpack .../02-apt_3.1.15_amd64.deb ...
 95s Unpacking apt (3.1.15) over (3.1.14) ...
 95s Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ...
 95s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ...
 95s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ...
 95s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ...
 95s Preparing to unpack .../05-less_668-1build1_amd64.deb ...
 95s Unpacking less (668-1build1) over (668-1) ...
 95s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ...
 95s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ...
 95s Preparing to unpack .../07-iptables_1.8.11-2ubuntu3_amd64.deb ...
 95s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
 95s Preparing to unpack .../08-libip4tc2_1.8.11-2ubuntu3_amd64.deb ...
 95s Unpacking libip4tc2:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
 95s Preparing to unpack .../09-libip6tc2_1.8.11-2ubuntu3_amd64.deb ...
 95s Unpacking libip6tc2:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
 95s Preparing to unpack .../10-libxtables12_1.8.11-2ubuntu3_amd64.deb ...
 95s Unpacking libxtables12:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
 95s Preparing to unpack .../11-python3-linkify-it_2.0.3-1ubuntu3_all.deb ...
 95s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ...
 95s Preparing to unpack .../12-python3-markdown-it_3.0.0-3build1_all.deb ...
 96s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ...
 96s Preparing to unpack .../13-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ...
 96s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ...
 96s Preparing to unpack .../14-libdrm-common_2.4.131-1_all.deb ...
 96s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ...
 96s Preparing to unpack .../15-libdrm2_2.4.131-1_amd64.deb ...
 96s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ...
 96s Preparing to unpack .../16-libgpm2_1.20.7-12build1_amd64.deb ...
 96s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ...
 96s Preparing to unpack .../17-libmaxminddb0_1.12.2-1build2_amd64.deb ...
 96s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ...
 96s Preparing to unpack .../18-libsensors-config_1%3a3.6.2-2build1_all.deb ...
 96s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ...
 96s Preparing to unpack .../19-libsensors5_1%3a3.6.2-2build1_amd64.deb ...
 96s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ...
 96s Preparing to unpack .../20-python3-gdbm_3.14.2-1_amd64.deb ...
 96s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-3) ...
 96s Preparing to unpack .../21-libgprofng0_2.45.90.20260201-1ubuntu1_amd64.deb ...
 96s Unpacking libgprofng0:amd64 (2.45.90.20260201-1ubuntu1) over (2.45.50.20260119-1ubuntu1) ...
 96s Preparing to unpack .../22-libctf0_2.45.90.20260201-1ubuntu1_amd64.deb ...
 96s Unpacking libctf0:amd64 (2.45.90.20260201-1ubuntu1) over (2.45.50.20260119-1ubuntu1) ...
 96s Preparing to unpack .../23-libctf-nobfd0_2.45.90.20260201-1ubuntu1_amd64.deb ...
 96s Unpacking libctf-nobfd0:amd64 (2.45.90.20260201-1ubuntu1) over (2.45.50.20260119-1ubuntu1) ...
 96s Preparing to unpack .../24-binutils-x86-64-linux-gnu_2.45.90.20260201-1ubuntu1_amd64.deb ...
 96s Unpacking binutils-x86-64-linux-gnu (2.45.90.20260201-1ubuntu1) over (2.45.50.20260119-1ubuntu1) ...
 96s Preparing to unpack .../25-libbinutils_2.45.90.20260201-1ubuntu1_amd64.deb ...
 96s Unpacking libbinutils:amd64 (2.45.90.20260201-1ubuntu1) over (2.45.50.20260119-1ubuntu1) ...
 96s Preparing to unpack .../26-binutils_2.45.90.20260201-1ubuntu1_amd64.deb ...
 96s Unpacking binutils (2.45.90.20260201-1ubuntu1) over (2.45.50.20260119-1ubuntu1) ...
 96s Preparing to unpack .../27-binutils-common_2.45.90.20260201-1ubuntu1_amd64.deb ...
 96s Unpacking binutils-common:amd64 (2.45.90.20260201-1ubuntu1) over (2.45.50.20260119-1ubuntu1) ...
 96s Preparing to unpack .../28-libsframe3_2.45.90.20260201-1ubuntu1_amd64.deb ...
 96s Unpacking libsframe3:amd64 (2.45.90.20260201-1ubuntu1) over (2.45.50.20260119-1ubuntu1) ...
 96s Preparing to unpack .../29-bpftool_7.7.0+6.19.0-3.3_amd64.deb ...
 96s Unpacking bpftool (7.7.0+6.19.0-3.3) over (7.7.0+6.18.0-9.9) ...
 96s Preparing to unpack .../30-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ...
 96s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ...
 96s Preparing to unpack .../31-libdrm-amdgpu1_2.4.131-1_amd64.deb ...
 96s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ...
 96s Preparing to unpack .../32-libnpth0t64_1.8-3build1_amd64.deb ...
 96s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ...
 96s Selecting previously unselected package libpython3.14:amd64.
 96s Preparing to unpack .../33-libpython3.14_3.14.2-1_amd64.deb ...
 96s Unpacking libpython3.14:amd64 (3.14.2-1) ...
 96s Preparing to unpack .../34-linux-perf_6.19.0-3.3_amd64.deb ...
 96s Unpacking linux-perf (6.19.0-3.3) over (6.18.0-9.9) ...
 96s Preparing to unpack .../35-linux-tools-common_6.19.0-3.3_all.deb ...
 96s Unpacking linux-tools-common (6.19.0-3.3) over (6.18.0-9.9) ...
 96s Preparing to unpack .../36-patch_2.8-2build1_amd64.deb ...
 96s Unpacking patch (2.8-2build1) over (2.8-2) ...
 96s Preparing to unpack .../37-pollinate_4.33-4ubuntu5_all.deb ...
 96s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ...
 96s Preparing to unpack .../38-python3-referencing_0.36.2-1ubuntu2_all.deb ...
 96s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ...
 96s Preparing to unpack .../39-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ...
 96s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ...
 96s Setting up libip4tc2:amd64 (1.8.11-2ubuntu3) ...
 96s Setting up libnpth0t64:amd64 (1.8-3build1) ...
 96s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ...
 97s Setting up libgpm2:amd64 (1.20.7-12build1) ...
 97s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
 97s Setting up bpftool (7.7.0+6.19.0-3.3) ...
 97s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ...
 97s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ...
 97s Setting up binutils-common:amd64 (2.45.90.20260201-1ubuntu1) ...
 97s Setting up libsensors-config (1:3.6.2-2build1) ...
 97s Setting up libsframe3:amd64 (2.45.90.20260201-1ubuntu1) ...
 97s Setting up less (668-1build1) ...
 97s Setting up libctf-nobfd0:amd64 (2.45.90.20260201-1ubuntu1) ...
 97s Setting up amd64-microcode (3.20251202.1ubuntu1) ...
 97s amd64-microcode: microcode will be updated at next boot
 97s Setting up pollinate (4.33-4ubuntu5) ...
107s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
107s Setting up patch (2.8-2build1) ...
107s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
107s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
107s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
107s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
107s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
107s Setting up libpython3.14:amd64 (3.14.2-1) ...
107s Setting up mawk (1.3.4.20260129-1) ...
107s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
107s Setting up python3.14 (3.14.2-1) ...
108s Setting up libbinutils:amd64 (2.45.90.20260201-1ubuntu1) ...
108s Setting up libdrm-common (2.4.131-1) ...
108s Setting up linux-tools-common (6.19.0-3.3) ...
108s Setting up libpython3-stdlib:amd64 (3.14.2-1) ...
108s Setting up libctf0:amd64 (2.45.90.20260201-1ubuntu1) ...
108s Setting up apt (3.1.15) ...
108s Setting up python3-gdbm (3.14.2-1) ...
108s Setting up iptables (1.8.11-2ubuntu3) ...
108s Setting up python3 (3.14.2-1) ...
108s running python rtupdate hooks for python3.14...
108s running python post-rtupdate hooks for python3.14...
108s Setting up libgprofng0:amd64 (2.45.90.20260201-1ubuntu1) ...
108s Setting up linux-perf (6.19.0-3.3) ...
108s Setting up libdrm2:amd64 (2.4.131-1) ...
108s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
108s Setting up binutils-x86-64-linux-gnu (2.45.90.20260201-1ubuntu1) ...
108s Setting up python3-referencing (0.36.2-1ubuntu2) ...
109s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
109s Setting up binutils (2.45.90.20260201-1ubuntu1) ...
109s Setting up python3-markdown-it (3.0.0-3build1) ...
109s Processing triggers for initramfs-tools (0.150ubuntu7) ...
109s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
113s Processing triggers for libc-bin (2.42-2ubuntu4) ...
113s Processing triggers for systemd (259-1ubuntu3) ...
113s Processing triggers for man-db (2.13.1-1) ...
114s Processing triggers for install-info (7.2-5) ...
114s autopkgtest [03:39:39]: upgrading testbed (apt dist-upgrade and autopurge)
115s Reading package lists...
115s Building dependency tree...
115s Reading state information...
116s Calculating upgrade...
116s The following packages were automatically installed and are no longer required:
116s   libpython3.13 libpython3.13-minimal libpython3.13-stdlib python3.13
116s   python3.13-minimal
116s Use 'sudo apt autoremove' to remove them.
116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
116s Solving dependencies...
116s The following packages will be REMOVED:
116s   libpython3.13* libpython3.13-minimal* libpython3.13-stdlib* python3.13*
116s   python3.13-minimal*
116s 0 upgraded, 0 newly installed, 5 to remove and 0 not upgraded.
116s After this operation, 30.3 MB disk space will be freed.
116s (Reading database ... 
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116s Removing libpython3.13:amd64 (3.13.11-1) ...
116s Removing python3.13 (3.13.11-1) ...
116s Removing libpython3.13-stdlib:amd64 (3.13.11-1) ...
116s Removing python3.13-minimal (3.13.11-1) ...
117s Removing libpython3.13-minimal:amd64 (3.13.11-1) ...
117s Processing triggers for systemd (259-1ubuntu3) ...
117s Processing triggers for man-db (2.13.1-1) ...
117s Processing triggers for libc-bin (2.42-2ubuntu4) ...
117s (Reading database ... 
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117s Purging configuration files for libpython3.13-minimal:amd64 (3.13.11-1) ...
117s Purging configuration files for python3.13-minimal (3.13.11-1) ...
117s autopkgtest [03:39:42]: rebooting testbed after setup commands that affected boot
182s autopkgtest [03:40:47]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026
184s autopkgtest [03:40:49]: @@@@@@@@@@@@@@@@@@@@ apt-source coot
223s Get:1 http://ftpmaster.internal/ubuntu resolute/universe coot 1.1.18+dfsg-3 (dsc) [3000 B]
223s Get:2 http://ftpmaster.internal/ubuntu resolute/universe coot 1.1.18+dfsg-3 (tar) [97.7 MB]
223s Get:3 http://ftpmaster.internal/ubuntu resolute/universe coot 1.1.18+dfsg-3 (diff) [54.5 kB]
223s gpgv: Signature made Mon Dec 22 13:49:06 2025 UTC
223s gpgv:                using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
223s gpgv:                issuer "merkys@debian.org"
223s gpgv: Can't check signature: No public key
223s dpkg-source: warning: cannot verify inline signature for ./coot_1.1.18+dfsg-3.dsc: no acceptable signature found
225s autopkgtest [03:41:30]: testing package coot version 1.1.18+dfsg-3
226s autopkgtest [03:41:31]: build not needed
235s autopkgtest [03:41:40]: test command1: preparing testbed
235s Reading package lists...
235s Building dependency tree...
235s Reading state information...
235s Solving dependencies...
235s Some packages could not be installed. This may mean that you have
235s requested an impossible situation or if you are using the unstable
235s distribution that some required packages have not yet been created
235s or been moved out of Incoming.
235s The following information may help to resolve the situation:
235s 
235s The following packages have unmet dependencies:
235s  satisfy:command-line : Depends: coot but it is not going to be installed
235s                         Depends: coot-data but it is not going to be installed
235s                         Depends: coot-doc but it is not going to be installed
235s                         Depends: libcootapi-dev but it is not going to be installed
235s                         Depends: libcootapi1.1 but it is not going to be installed
235s E: Unable to satisfy dependencies. Reached two conflicting assignments:
235s    1. coot:amd64 is selected for install because:
235s       1. satisfy:command-line:amd64=1 is selected for install
235s       2. satisfy:command-line:amd64 Depends coot
235s    2. coot:amd64 Depends python3 (< 3.14)
235s       but none of the choices are installable:
235s       - python3:amd64=3.13.9-3 is not selected for install
236s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed
236s Reading package lists...
236s Building dependency tree...
236s Reading state information...
236s Solving dependencies...
236s Some packages could not be installed. This may mean that you have
236s requested an impossible situation or if you are using the unstable
236s distribution that some required packages have not yet been created
236s or been moved out of Incoming.
236s The following information may help to resolve the situation:
236s 
236s The following packages have unmet dependencies:
236s  satisfy:command-line : Depends: coot but it is not going to be installed
236s                         Depends: coot-data but it is not going to be installed
236s                         Depends: coot-doc but it is not going to be installed
236s                         Depends: libcootapi-dev but it is not going to be installed
236s                         Depends: libcootapi1.1 but it is not going to be installed
236s E: Unable to satisfy dependencies. Reached two conflicting assignments:
236s    1. coot:amd64 is selected for install because:
236s       1. satisfy:command-line:amd64=1 is selected for install
236s       2. satisfy:command-line:amd64 Depends coot
236s    2. coot:amd64 Depends python3 (< 3.14)
236s       but none of the choices are installable:
236s       - python3:amd64=3.13.9-3 is not selected for install
236s command1             FAIL badpkg
236s blame: coot
236s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
236s autopkgtest [03:41:41]: test command2: preparing testbed
236s Reading package lists...
237s Building dependency tree...
237s Reading state information...
237s Solving dependencies...
237s Some packages could not be installed. This may mean that you have
237s requested an impossible situation or if you are using the unstable
237s distribution that some required packages have not yet been created
237s or been moved out of Incoming.
237s The following information may help to resolve the situation:
237s 
237s The following packages have unmet dependencies:
237s  satisfy:command-line : Depends: coot but it is not going to be installed
237s                         Depends: coot-data but it is not going to be installed
237s                         Depends: coot-doc but it is not going to be installed
237s                         Depends: libcootapi-dev but it is not going to be installed
237s                         Depends: libcootapi1.1 but it is not going to be installed
237s E: Unable to satisfy dependencies. Reached two conflicting assignments:
237s    1. coot:amd64 is selected for install because:
237s       1. satisfy:command-line:amd64=1 is selected for install
237s       2. satisfy:command-line:amd64 Depends coot
237s    2. coot:amd64 Depends python3 (< 3.14)
237s       but none of the choices are installable:
237s       - python3:amd64=3.13.9-3 is not selected for install
237s command2             FAIL badpkg
237s blame: coot
237s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
237s autopkgtest [03:41:42]: @@@@@@@@@@@@@@@@@@@@ summary
237s command1             FAIL badpkg
237s blame: coot
237s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
237s command2             FAIL badpkg
237s blame: coot
237s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.