0s autopkgtest [00:11:39]: starting date and time: 2026-02-07 00:11:39+0000 0s autopkgtest [00:11:39]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [00:11:39]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9heupk8g/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:tqdm --apt-upgrade cctbx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=tqdm/4.67.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-26.secgroup --name adt-resolute-amd64-cctbx-20260207-001138-juju-7f2275-prod-proposed-migration-environment-2-224d840f-5834-4bc8-9e31-f89955f547cd --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-cctbx-20260207-001138-juju-7f2275-prod-proposed-migration-environment-2-224d840f-5834-4bc8-9e31-f89955f547cd from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 94s autopkgtest [00:13:13]: testbed dpkg architecture: amd64 94s autopkgtest [00:13:13]: testbed apt version: 3.1.14 94s autopkgtest [00:13:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 94s autopkgtest [00:13:13]: testbed release detected to be: None 95s autopkgtest [00:13:14]: updating testbed package index (apt update) 95s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 95s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 95s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 95s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 95s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [36.7 kB] 95s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB] 95s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1707 kB] 95s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [206 kB] 95s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [190 kB] 96s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [269 kB] 96s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6500 B] 96s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 96s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB] 96s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 96s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1443 kB] 96s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [552 kB] 96s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [36.8 kB] 96s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4892 B] 96s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [28.2 kB] 96s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B] 97s Fetched 4701 kB in 1s (5163 kB/s) 97s Reading package lists... 98s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 98s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 98s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 98s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 98s Reading package lists... 98s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 99s The following packages will be upgraded: 99s amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less 99s libapt-pkg7.0 libattr1 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common 99s libdrm2 libgpm2 libkeyutils1 libmaxminddb0 libnpth0t64 libsensors-config 99s libsensors5 mawk patch pollinate python3-linkify-it python3-markdown-it 99s python3-referencing sed tar 99s 27 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 5981 kB of archives. 99s After this operation, 270 kB disk space will be freed. 99s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 99s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 99s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 99s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 99s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 99s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 99s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 99s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 99s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 99s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 99s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 99s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 99s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 99s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 99s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 99s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 99s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 99s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 99s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 99s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 99s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 99s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 99s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 99s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 99s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 99s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 99s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 99s dpkg-preconfigure: unable to re-open stdin: No such file or directory 99s Fetched 5981 kB in 0s (32.0 MB/s) 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 99s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 99s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 99s Setting up findutils (4.10.0-3build2) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 100s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 100s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 100s Setting up sed (4.9-2build3) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 100s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 100s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 100s Setting up tar (1.35+dfsg-3.1build2) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 100s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 100s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 100s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 100s Preparing to unpack .../00-mawk_1.3.4.20260129-1_amd64.deb ... 100s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 100s Preparing to unpack .../01-libapt-pkg7.0_3.1.15_amd64.deb ... 100s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ... 100s Preparing to unpack .../02-apt_3.1.15_amd64.deb ... 100s Unpacking apt (3.1.15) over (3.1.14) ... 100s Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ... 100s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 100s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ... 100s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 100s Preparing to unpack .../05-less_668-1build1_amd64.deb ... 100s Unpacking less (668-1build1) over (668-1) ... 100s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ... 100s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ... 100s Preparing to unpack .../07-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 100s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 100s Preparing to unpack .../08-python3-markdown-it_3.0.0-3build1_all.deb ... 100s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ... 100s Preparing to unpack .../09-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ... 100s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 100s Preparing to unpack .../10-libdrm-common_2.4.131-1_all.deb ... 100s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 100s Preparing to unpack .../11-libdrm2_2.4.131-1_amd64.deb ... 100s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 100s Preparing to unpack .../12-libgpm2_1.20.7-12build1_amd64.deb ... 100s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ... 100s Preparing to unpack .../13-libmaxminddb0_1.12.2-1build2_amd64.deb ... 100s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ... 101s Preparing to unpack .../14-libsensors-config_1%3a3.6.2-2build1_all.deb ... 101s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ... 101s Preparing to unpack .../15-libsensors5_1%3a3.6.2-2build1_amd64.deb ... 101s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ... 101s Preparing to unpack .../16-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ... 101s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 101s Preparing to unpack .../17-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 101s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 101s Preparing to unpack .../18-libnpth0t64_1.8-3build1_amd64.deb ... 101s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ... 101s Preparing to unpack .../19-patch_2.8-2build1_amd64.deb ... 101s Unpacking patch (2.8-2build1) over (2.8-2) ... 101s Preparing to unpack .../20-pollinate_4.33-4ubuntu5_all.deb ... 101s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 101s Preparing to unpack .../21-python3-referencing_0.36.2-1ubuntu2_all.deb ... 101s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 101s Preparing to unpack .../22-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ... 101s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ... 101s Setting up libnpth0t64:amd64 (1.8-3build1) ... 101s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 101s Setting up libgpm2:amd64 (1.20.7-12build1) ... 101s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 101s Setting up libsensors-config (1:3.6.2-2build1) ... 101s Setting up less (668-1build1) ... 101s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 101s amd64-microcode: microcode will be updated at next boot 101s Setting up pollinate (4.33-4ubuntu5) ... 111s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 111s Setting up patch (2.8-2build1) ... 111s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 111s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 111s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 111s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 111s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 111s Setting up mawk (1.3.4.20260129-1) ... 111s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 111s Setting up libdrm-common (2.4.131-1) ... 111s Setting up python3-referencing (0.36.2-1ubuntu2) ... 112s Setting up apt (3.1.15) ... 112s Setting up python3-markdown-it (3.0.0-3build1) ... 112s Setting up libdrm2:amd64 (2.4.131-1) ... 112s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 112s Processing triggers for libc-bin (2.42-2ubuntu4) ... 112s Processing triggers for man-db (2.13.1-1) ... 113s Processing triggers for install-info (7.2-5) ... 113s Processing triggers for initramfs-tools (0.150ubuntu7) ... 113s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 118s autopkgtest [00:13:37]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Solving dependencies... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s autopkgtest [00:13:39]: rebooting testbed after setup commands that affected boot 147s autopkgtest [00:14:06]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 149s autopkgtest [00:14:08]: @@@@@@@@@@@@@@@@@@@@ apt-source cctbx 152s Get:1 http://ftpmaster.internal/ubuntu resolute/universe cctbx 2025.12+ds2+~3.26.0+ds1-3 (dsc) [3880 B] 152s Get:2 http://ftpmaster.internal/ubuntu resolute/universe cctbx 2025.12+ds2+~3.26.0+ds1-3 (tar) [27.0 MB] 152s Get:3 http://ftpmaster.internal/ubuntu resolute/universe cctbx 2025.12+ds2+~3.26.0+ds1-3 (diff) [420 kB] 153s gpgv: Signature made Wed Jan 21 19:47:36 2026 UTC 153s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 153s gpgv: issuer "tchet@debian.org" 153s gpgv: Can't check signature: No public key 153s dpkg-source: warning: cannot verify inline signature for ./cctbx_2025.12+ds2+~3.26.0+ds1-3.dsc: no acceptable signature found 153s autopkgtest [00:14:12]: testing package cctbx version 2025.12+ds2+~3.26.0+ds1-3 155s autopkgtest [00:14:14]: build not needed 160s autopkgtest [00:14:19]: test cctbx: preparing testbed 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 161s Solving dependencies... 161s The following NEW packages will be installed: 161s adwaita-icon-theme at-spi2-common cpp cpp-15 cpp-15-x86-64-linux-gnu 161s cpp-x86-64-linux-gnu dconf-gsettings-backend dconf-service fontconfig 161s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 161s fonts-lato fonts-lyx g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu 161s gcc gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu 161s gtk-update-icon-cache hicolor-icon-theme icu-devtools libann-cctbx-dev 161s libann-cctbx0 libantlr3c-3.4-0 libasan8 libasound2-data libasound2t64 161s libasyncns0 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 161s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 161s libboost-container1.88-dev libboost-container1.88.0 libboost-graph1.88-dev 161s libboost-graph1.88.0 libboost-numpy1.88.0 libboost-python-dev 161s libboost-python1.88-dev libboost-python1.88.0 libboost-regex1.88-dev 161s libboost-regex1.88.0 libboost-serialization1.88-dev 161s libboost-serialization1.88.0 libboost-test1.88-dev libboost-test1.88.0 161s libboost-thread1.88.0 libboost-timer1.88.0 libboost1.88-dev libc-dev-bin 161s libc6-dev libcairo-gobject2 libcairo2 libcbf1t64 libcc1-0 libccp4-data 161s libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 libcolord2 161s libcrypt-dev libcups2t64 libdatrie1 libdconf1 libdecor-0-0 libdeflate0 161s libdouble-conversion3 libdrm-intel1 libegl-mesa0 libegl1 libepoxy0 161s libexpat1-dev libflac14 libfontconfig1 libgbm1 libgcc-15-dev 161s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 161s libgl1-mesa-dri libgles2 libglew2.2 libglu1-mesa libglut3.12 libglvnd0 161s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0t64 libgtk-3-common 161s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 libice6 libicu-dev 161s libimagequant0 libinput-bin libinput10 libisl23 libitm1 libjbig0 161s libjpeg-turbo8 libjpeg8 libjs-jquery liblapack3 liblcms2-2 liblerc4 liblsan0 161s liblzf1 libmd4c0 libmmdb2-0 libmp3lame0 libmpc3 libmpg123-0t64 libmtdev1t64 161s libnetcdf22 libnotify4 libogg0 libopengl0 libopenjp2-7 libopus0 161s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 161s libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpulse0 libpython3-dev 161s libpython3.13-dev libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 161s libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 161s libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 161s libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libquadmath0 libraqm0 161s libsamplerate0 libsdl2-2.0-0 libsdl2-classic libsharpyuv0 libsm6 libsndfile1 161s libssm2 libstdc++-15-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 161s libtk8.6 libtsan2 libubsan1 libvorbis0a libvorbisenc2 libvulkan1 161s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 161s libwayland-egl1 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 161s libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 161s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 161s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 161s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 161s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 161s libxinerama1 libxkbcommon-x11-0 libxrandr2 libxrender1 libxshmfence1 161s libxslt1.1 libxss1 libxtst6 libxxf86vm1 libzopfli1 linux-libc-dev 161s mesa-libgallium pymol-data python-matplotlib-data python3-all python3-brotli 161s python3-cctbx python3-contourpy python3-cycler python3-decorator python3-dev 161s python3-flexcache python3-flexparser python3-fonttools python3-h5py 161s python3-h5py-serial python3-hdf5plugin python3-iniconfig python3-kiwisolver 161s python3-legacy-cgi python3-lxml python3-lz4 python3-matplotlib 161s python3-mpmath python3-mrcfile python3-natsort python3-numpy 161s python3-numpy-dev python3-nxmx python3-opengl python3-ordered-set 161s python3-pil python3-pil.imagetk python3-pint python3-platformdirs 161s python3-pluggy python3-procrunner python3-pycbf python3-pymol python3-pyqt5 161s python3-pyqt5.qtopengl python3-pyqt5.sip python3-pytest python3-scipy 161s python3-sympy python3-tk python3-tqdm python3-ufolib2 python3-wxgtk4.0 161s python3-zopfli python3.13-dev python3.13-tk python3.14 python3.14-minimal 161s python3.14-tk rpcsvc-proto sphinx-rtd-theme-common unicode-data x11-common 161s zlib1g-dev 161s 0 upgraded, 285 newly installed, 0 to remove and 0 not upgraded. 161s Need to get 314 MB of archives. 161s After this operation, 1540 MB of additional disk space will be used. 161s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-lato all 2.015-1build1 [2779 kB] 161s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 161s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 161s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 161s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 161s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 161s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 161s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 161s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [8584 B] 161s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 161s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 161s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 161s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 161s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 161s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 161s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 161s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 161s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.4+dfsg-1 [153 kB] 161s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 gtk-update-icon-cache amd64 4.20.3+ds-3 [54.9 kB] 161s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 hicolor-icon-theme all 0.18-2build1 [13.2 kB] 161s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 adwaita-icon-theme all 49.0-1 [581 kB] 162s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 at-spi2-common all 2.59.0-1 [9774 B] 162s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 162s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 162s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 162s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 162s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 162s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 162s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libdconf1 amd64 0.49.0-4 [40.5 kB] 162s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-service amd64 0.49.0-4 [27.7 kB] 162s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-gsettings-backend amd64 0.49.0-4 [22.2 kB] 162s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 162s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 162s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 162s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 162s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 162s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 162s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 162s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB] 162s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 162s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB] 162s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB] 162s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB] 162s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB] 162s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB] 162s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB] 162s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB] 163s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 163s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 163s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 163s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 163s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 163s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 163s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.18.0-9.9 [1860 kB] 163s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 163s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 163s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 163s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 163s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 164s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 164s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 164s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 164s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 164s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libann-cctbx0 amd64 1.1.2+doc-9build2 [33.1 kB] 164s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 libann-cctbx-dev amd64 1.1.2+doc-9build2 [46.0 kB] 164s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4build3 [46.3 kB] 164s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libasound2-data all 1.2.15.3-1ubuntu1 [21.4 kB] 164s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libasound2t64 amd64 1.2.15.3-1ubuntu1 [418 kB] 164s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libasyncns0 amd64 0.8-7 [12.4 kB] 164s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk1.0-0t64 amd64 2.59.0-1 [57.1 kB] 164s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB] 164s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libatspi2.0-0t64 amd64 2.59.0-1 [85.7 kB] 164s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk-bridge2.0-0t64 amd64 2.59.0-1 [67.6 kB] 164s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common-data amd64 0.8-17ubuntu2 [31.5 kB] 164s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common3 amd64 0.8-17ubuntu2 [23.7 kB] 164s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-client3 amd64 0.8-17ubuntu2 [27.3 kB] 164s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.88-dev amd64 1.88.0-1.4ubuntu3 [11.3 MB] 164s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-container1.88.0 amd64 1.88.0-1.4ubuntu3 [265 kB] 164s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-container1.88-dev amd64 1.88.0-1.4ubuntu3 [269 kB] 164s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-graph1.88.0 amd64 1.88.0-1.4ubuntu3 [369 kB] 164s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-regex1.88.0 amd64 1.88.0-1.4ubuntu3 [347 kB] 164s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 164s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-regex1.88-dev amd64 1.88.0-1.4ubuntu3 [360 kB] 164s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-serialization1.88.0 amd64 1.88.0-1.4ubuntu3 [347 kB] 164s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-serialization1.88-dev amd64 1.88.0-1.4ubuntu3 [388 kB] 164s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-test1.88.0 amd64 1.88.0-1.4ubuntu3 [462 kB] 164s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-test1.88-dev amd64 1.88.0-1.4ubuntu3 [570 kB] 164s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-graph1.88-dev amd64 1.88.0-1.4ubuntu3 [400 kB] 164s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-python1.88.0 amd64 1.88.0-1.4ubuntu3 [360 kB] 164s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-numpy1.88.0 amd64 1.88.0-1.4ubuntu3 [248 kB] 164s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libexpat1-dev amd64 2.7.4-1 [145 kB] 164s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 164s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13-dev amd64 3.13.11-1 [5798 kB] 164s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3-dev amd64 3.13.9-3 [11.2 kB] 164s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-dev amd64 3.13.11-1 [508 kB] 164s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dev amd64 3.13.9-3 [26.6 kB] 164s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-python1.88-dev amd64 1.88.0-1.4ubuntu3 [382 kB] 164s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-python-dev amd64 1.88.0.0ubuntu3 [4672 B] 164s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-thread1.88.0 amd64 1.88.0-1.4ubuntu3 [273 kB] 164s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-timer1.88.0 amd64 1.88.0-1.4ubuntu3 [243 kB] 164s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 164s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 164s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 164s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 164s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 164s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo-gobject2 amd64 1.18.4-3 [127 kB] 164s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 164s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 164s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcbf1t64 amd64 0.9.7+dfsg1-5.1 [362 kB] 164s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4-data all 8.0.0-5build1 [65.4 kB] 164s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4c0t64 amd64 8.0.0-5build1 [95.9 kB] 164s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmmdb2-0 amd64 2.0.22-1build1 [369 kB] 164s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4f0t64 amd64 8.0.0-5build1 [221 kB] 164s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4-dev amd64 8.0.0-5build1 [42.4 kB] 164s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcctbx0 amd64 2025.12+ds2+~3.26.0+ds1-3 [2009 kB] 165s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcctbx-dev amd64 2025.12+ds2+~3.26.0+ds1-3 [1197 kB] 165s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 165s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolord2 amd64 1.4.8-2build1 [149 kB] 165s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libcups2t64 amd64 2.4.16-1ubuntu1 [273 kB] 165s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 165s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-client0 amd64 1.24.0-2 [28.5 kB] 165s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libdecor-0-0 amd64 0.2.5-1 [16.5 kB] 165s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdouble-conversion3 amd64 3.4.0-1 [41.4 kB] 165s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libpciaccess0 amd64 0.18.1-1ubuntu3 [19.0 kB] 165s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-intel1 amd64 2.4.131-1 [66.7 kB] 165s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libx11-xcb1 amd64 2:1.8.12-1build1 [8044 B] 165s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-dri3-0 amd64 1.17.0-2ubuntu1 [7540 B] 165s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-present0 amd64 1.17.0-2ubuntu1 [6112 B] 165s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-randr0 amd64 1.17.0-2ubuntu1 [17.9 kB] 165s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-sync1 amd64 1.17.0-2ubuntu1 [9348 B] 165s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xfixes0 amd64 1.17.0-2ubuntu1 [10.2 kB] 165s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libxshmfence1 amd64 1.3.3-1build1 [5284 B] 165s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 mesa-libgallium amd64 25.3.3-1ubuntu1 [11.1 MB] 165s Get:134 http://ftpmaster.internal/ubuntu resolute/main amd64 libgbm1 amd64 25.3.3-1ubuntu1 [34.0 kB] 165s Get:135 http://ftpmaster.internal/ubuntu resolute/main amd64 libegl-mesa0 amd64 25.3.3-1ubuntu1 [117 kB] 165s Get:136 http://ftpmaster.internal/ubuntu resolute/main amd64 libepoxy0 amd64 1.5.10-2build1 [226 kB] 165s Get:137 http://ftpmaster.internal/ubuntu resolute/main amd64 libogg0 amd64 1.3.6-2 [23.4 kB] 165s Get:138 http://ftpmaster.internal/ubuntu resolute/main amd64 libflac14 amd64 1.5.0+ds-5 [168 kB] 165s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 libvulkan1 amd64 1.4.335.0-1 [158 kB] 165s Get:140 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1-mesa-dri amd64 25.3.3-1ubuntu1 [37.5 kB] 165s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 libglvnd0 amd64 1.7.0-3 [64.1 kB] 165s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-glx0 amd64 1.17.0-2ubuntu1 [24.7 kB] 165s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libxxf86vm1 amd64 1:1.1.4-2 [10.6 kB] 165s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx-mesa0 amd64 25.3.3-1ubuntu1 [110 kB] 165s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx0 amd64 1.7.0-3 [38.9 kB] 165s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1 amd64 1.7.0-3 [98.3 kB] 165s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglew2.2 amd64 2.2.0-4build2 [181 kB] 165s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglut3.12 amd64 3.4.0-6 [101 kB] 165s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 165s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 165s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 165s Get:152 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 165s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 165s Get:154 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 165s Get:155 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 165s Get:156 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-cursor0 amd64 1.24.0-2 [10.8 kB] 165s Get:157 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-egl1 amd64 1.24.0-2 [6248 B] 165s Get:158 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcomposite1 amd64 1:0.4.6-1build1 [6664 B] 165s Get:159 http://ftpmaster.internal/ubuntu resolute/main amd64 libxfixes3 amd64 1:6.0.0-2build2 [11.1 kB] 165s Get:160 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcursor1 amd64 1:1.2.3-1build1 [22.1 kB] 165s Get:161 http://ftpmaster.internal/ubuntu resolute/main amd64 libxdamage1 amd64 1:1.1.7-1 [6582 B] 165s Get:162 http://ftpmaster.internal/ubuntu resolute/main amd64 libxinerama1 amd64 2:1.1.4-3build2 [6472 B] 165s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrandr2 amd64 2:1.5.4-1build1 [19.6 kB] 165s Get:164 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB] 165s Get:165 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-0t64 amd64 3.24.50-1ubuntu2 [3263 kB] 165s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 165s Get:167 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 165s Get:168 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 165s Get:169 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 165s Get:170 http://ftpmaster.internal/ubuntu resolute/main amd64 libwacom-common all 2.16.1-1 [113 kB] 165s Get:171 http://ftpmaster.internal/ubuntu resolute/main amd64 libwacom9 amd64 2.16.1-1 [28.3 kB] 165s Get:172 http://ftpmaster.internal/ubuntu resolute/main amd64 libinput-bin amd64 1.30.1-1 [24.7 kB] 165s Get:173 http://ftpmaster.internal/ubuntu resolute/main amd64 libmtdev1t64 amd64 1.1.7-1build1 [15.2 kB] 165s Get:174 http://ftpmaster.internal/ubuntu resolute/main amd64 libinput10 amd64 1.30.1-1 [160 kB] 165s Get:175 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 165s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4build1 [7490 B] 165s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmd4c0 amd64 0.5.2-2build1 [43.7 kB] 165s Get:178 http://ftpmaster.internal/ubuntu resolute/main amd64 libmp3lame0 amd64 3.100-6build2 [146 kB] 165s Get:179 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpg123-0t64 amd64 1.33.3-2 [176 kB] 165s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 165s Get:181 http://ftpmaster.internal/ubuntu resolute/main amd64 libnotify4 amd64 0.8.8-1 [28.6 kB] 165s Get:182 http://ftpmaster.internal/ubuntu resolute/main amd64 libopus0 amd64 1.6.1-1 [3564 kB] 165s Get:183 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 165s Get:184 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 165s Get:185 http://ftpmaster.internal/ubuntu resolute/main amd64 libvorbis0a amd64 1.3.7-3build1 [103 kB] 165s Get:186 http://ftpmaster.internal/ubuntu resolute/main amd64 libvorbisenc2 amd64 1.3.7-3build1 [79.8 kB] 165s Get:187 http://ftpmaster.internal/ubuntu resolute/main amd64 libsndfile1 amd64 1.2.2-4 [219 kB] 165s Get:188 http://ftpmaster.internal/ubuntu resolute/main amd64 libpulse0 amd64 1:17.0+dfsg1-2ubuntu4 [293 kB] 166s Get:189 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 166s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 166s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5core5t64 amd64 5.15.18+dfsg-1ubuntu1 [2066 kB] 166s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5dbus5t64 amd64 5.15.18+dfsg-1ubuntu1 [222 kB] 166s Get:193 http://ftpmaster.internal/ubuntu resolute/main amd64 libegl1 amd64 1.7.0-3 [29.7 kB] 166s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5network5t64 amd64 5.15.18+dfsg-1ubuntu1 [731 kB] 166s Get:195 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 166s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-icccm4 amd64 0.4.2-1build1 [11.0 kB] 166s Get:197 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-util1 amd64 0.4.1-1build1 [11.1 kB] 166s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-image0 amd64 0.4.0-2build2 [11.0 kB] 166s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-keysyms1 amd64 0.4.1-1build1 [8704 B] 166s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-render-util0 amd64 0.3.10-1build1 [10.4 kB] 166s Get:201 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shape0 amd64 1.17.0-2ubuntu1 [6172 B] 166s Get:202 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xinerama0 amd64 1.17.0-2ubuntu1 [5542 B] 166s Get:203 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xinput0 amd64 1.17.0-2ubuntu1 [32.5 kB] 166s Get:204 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xkb1 amd64 1.17.0-2ubuntu1 [32.7 kB] 166s Get:205 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon-x11-0 amd64 1.12.3-1 [15.0 kB] 166s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5gui5t64 amd64 5.15.18+dfsg-1ubuntu1 [3819 kB] 166s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5widgets5t64 amd64 5.15.18+dfsg-1ubuntu1 [2584 kB] 166s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5xml5t64 amd64 5.15.18+dfsg-1ubuntu1 [124 kB] 166s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5designer5 amd64 5.15.18-1 [2837 kB] 166s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5sql5t64 amd64 5.15.18+dfsg-1ubuntu1 [123 kB] 166s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5help5 amd64 5.15.18-1 [163 kB] 166s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5opengl5t64 amd64 5.15.18+dfsg-1ubuntu1 [150 kB] 166s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5printsupport5t64 amd64 5.15.18+dfsg-1ubuntu1 [209 kB] 166s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5test5t64 amd64 5.15.18+dfsg-1ubuntu1 [149 kB] 166s Get:215 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1build1 [15.5 kB] 166s Get:216 http://ftpmaster.internal/ubuntu resolute/main amd64 libsamplerate0 amd64 0.2.2-4build2 [1343 kB] 166s Get:217 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 166s Get:218 http://ftpmaster.internal/ubuntu resolute/main amd64 libsdl2-classic amd64 2.32.10+dfsg-6 [710 kB] 166s Get:219 http://ftpmaster.internal/ubuntu resolute/main amd64 libsdl2-2.0-0 amd64 2.32.10+dfsg-6 [14.0 kB] 166s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 libssm2 amd64 1.4.0-2build2 [88.7 kB] 166s Get:221 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 166s Get:222 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 166s Get:223 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 167s Get:224 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1build1 [12.8 kB] 167s Get:225 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1build1 [26.4 kB] 167s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxbase3.2-1t64 amd64 3.2.9+dfsg-1 [931 kB] 167s Get:227 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtst6 amd64 2:1.2.5-1build1 [13.1 kB] 167s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxgtk3.2-1t64 amd64 3.2.9+dfsg-1 [4703 kB] 167s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxgtk-gl3.2-1t64 amd64 3.2.9+dfsg-1 [53.1 kB] 167s Get:230 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 167s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3build1 [114 kB] 167s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 pymol-data all 3.1.0+dfsg-1build2 [1392 kB] 167s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 167s Get:234 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 167s Get:235 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.9-3 [890 B] 167s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 167s Get:237 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-legacy-cgi all 2.6.4-2 [17.2 kB] 167s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pycbf amd64 0.9.7+dfsg1-5.1 [181 kB] 167s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.15.1-4 [1586 kB] 167s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.15.1-4 [11.3 kB] 167s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-hdf5plugin all 5.1.0-1 [23.3 kB] 167s Get:242 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 167s Get:243 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 167s Get:244 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.11-1 [108 kB] 167s Get:245 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.2-1 [109 kB] 167s Get:246 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-3 [11.2 kB] 167s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B] 167s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.3-1 [255 kB] 167s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 167s Get:250 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 167s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.5+dfsg-1 [27.7 kB] 167s Get:252 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 167s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.16.3-4 [19.0 MB] 168s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 168s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 168s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 168s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 168s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1build1 [9543 kB] 168s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.61.1-3 [1742 kB] 168s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 168s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 168s Get:262 http://ftpmaster.internal/ubuntu resolute/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1013 kB] 168s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mrcfile all 1.5.4-2 [116 kB] 168s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-natsort all 8.4.0-2 [34.2 kB] 168s Get:265 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-flexcache all 0.3-3 [13.6 kB] 168s Get:266 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-flexparser all 0.4-2 [44.0 kB] 168s Get:267 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.5.1-1 [17.1 kB] 168s Get:268 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pint all 0.25.2-2 [208 kB] 168s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nxmx all 0.0.4-1build1 [16.6 kB] 168s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ordered-set all 4.1.0-1build1 [9668 B] 168s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-procrunner all 2.3.3-2 [12.0 kB] 168s Get:272 http://ftpmaster.internal/ubuntu resolute/main amd64 libgles2 amd64 1.7.0-3 [17.5 kB] 168s Get:273 http://ftpmaster.internal/ubuntu resolute/main amd64 libopengl0 amd64 1.7.0-3 [32.8 kB] 168s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglu1-mesa amd64 9.0.2-1.1build2 [159 kB] 168s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-opengl all 3.1.10+dfsg-1 [633 kB] 168s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5.sip amd64 12.17.2-1 [81.1 kB] 169s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-3build2 [2737 kB] 169s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-3build2 [127 kB] 169s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pymol amd64 3.1.0+dfsg-1build2 [7762 kB] 169s Get:280 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-tqdm all 4.67.3-1 [93.3 kB] 169s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-wxgtk4.0 amd64 4.2.4+dfsg-1 [11.1 MB] 169s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cctbx amd64 2025.12+ds2+~3.26.0+ds1-3 [33.5 MB] 170s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-2 [6962 B] 170s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-2 [21.1 kB] 170s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 9.0.2-2 [277 kB] 170s Fetched 314 MB in 9s (34.2 MB/s) 170s Selecting previously unselected package fonts-lato. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 171s Preparing to unpack .../000-fonts-lato_2.015-1build1_all.deb ... 171s Unpacking fonts-lato (2.015-1build1) ... 171s Selecting previously unselected package python3-numpy-dev:amd64. 171s Preparing to unpack .../001-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 171s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 171s Selecting previously unselected package libblas3:amd64. 171s Preparing to unpack .../002-libblas3_3.12.1-7ubuntu1_amd64.deb ... 171s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 171s Selecting previously unselected package libgfortran5:amd64. 171s Preparing to unpack .../003-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 171s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 171s Selecting previously unselected package liblapack3:amd64. 171s Preparing to unpack .../004-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 171s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 171s Selecting previously unselected package python3-numpy. 171s Preparing to unpack .../005-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 171s Unpacking python3-numpy (1:2.3.5+ds-3) ... 171s Selecting previously unselected package libpython3.14-minimal:amd64. 171s Preparing to unpack .../006-libpython3.14-minimal_3.14.2-1_amd64.deb ... 171s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 171s Selecting previously unselected package python3.14-minimal. 171s Preparing to unpack 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previously unselected package fonts-lyx. 172s Preparing to unpack .../037-fonts-lyx_2.5.0~RC2-3_all.deb ... 172s Unpacking fonts-lyx (2.5.0~RC2-3) ... 172s Selecting previously unselected package libcc1-0:amd64. 172s Preparing to unpack .../038-libcc1-0_15.2.0-12ubuntu1_amd64.deb ... 172s Unpacking libcc1-0:amd64 (15.2.0-12ubuntu1) ... 172s Selecting previously unselected package libgomp1:amd64. 172s Preparing to unpack .../039-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 172s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 172s Selecting previously unselected package libitm1:amd64. 172s Preparing to unpack .../040-libitm1_15.2.0-12ubuntu1_amd64.deb ... 172s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ... 172s Selecting previously unselected package libasan8:amd64. 172s Preparing to unpack .../041-libasan8_15.2.0-12ubuntu1_amd64.deb ... 172s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ... 172s Selecting previously unselected package liblsan0:amd64. 172s Preparing to unpack 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package libavahi-common-data:amd64. 173s Preparing to unpack .../073-libavahi-common-data_0.8-17ubuntu2_amd64.deb ... 173s Unpacking libavahi-common-data:amd64 (0.8-17ubuntu2) ... 173s Selecting previously unselected package libavahi-common3:amd64. 173s Preparing to unpack .../074-libavahi-common3_0.8-17ubuntu2_amd64.deb ... 173s Unpacking libavahi-common3:amd64 (0.8-17ubuntu2) ... 173s Selecting previously unselected package libavahi-client3:amd64. 173s Preparing to unpack .../075-libavahi-client3_0.8-17ubuntu2_amd64.deb ... 173s Unpacking libavahi-client3:amd64 (0.8-17ubuntu2) ... 173s Selecting previously unselected package libboost1.88-dev:amd64. 173s Preparing to unpack .../076-libboost1.88-dev_1.88.0-1.4ubuntu3_amd64.deb ... 173s Unpacking libboost1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 174s Selecting previously unselected package libboost-container1.88.0:amd64. 174s Preparing to unpack .../077-libboost-container1.88.0_1.88.0-1.4ubuntu3_amd64.deb ... 174s Unpacking 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previously unselected package zlib1g-dev:amd64. 174s Preparing to unpack .../091-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 174s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 174s Selecting previously unselected package libpython3.13-dev:amd64. 174s Preparing to unpack .../092-libpython3.13-dev_3.13.11-1_amd64.deb ... 174s Unpacking libpython3.13-dev:amd64 (3.13.11-1) ... 174s Selecting previously unselected package libpython3-dev:amd64. 174s Preparing to unpack .../093-libpython3-dev_3.13.9-3_amd64.deb ... 174s Unpacking libpython3-dev:amd64 (3.13.9-3) ... 174s Selecting previously unselected package python3.13-dev. 174s Preparing to unpack .../094-python3.13-dev_3.13.11-1_amd64.deb ... 174s Unpacking python3.13-dev (3.13.11-1) ... 174s Selecting previously unselected package python3-dev. 174s Preparing to unpack .../095-python3-dev_3.13.9-3_amd64.deb ... 174s Unpacking python3-dev (3.13.9-3) ... 174s Selecting previously unselected package 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libpixman-1-0:amd64 (0.46.4-1) ... 174s Selecting previously unselected package libxcb-render0:amd64. 174s Preparing to unpack .../101-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 174s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 174s Selecting previously unselected package libxcb-shm0:amd64. 174s Preparing to unpack .../102-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 174s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 174s Selecting previously unselected package libxrender1:amd64. 174s Preparing to unpack .../103-libxrender1_1%3a0.9.12-1_amd64.deb ... 174s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 175s Selecting previously unselected package libcairo2:amd64. 175s Preparing to unpack .../104-libcairo2_1.18.4-3_amd64.deb ... 175s Unpacking libcairo2:amd64 (1.18.4-3) ... 175s Selecting previously unselected package libcairo-gobject2:amd64. 175s Preparing to unpack .../105-libcairo-gobject2_1.18.4-3_amd64.deb ... 175s Unpacking libcairo-gobject2:amd64 (1.18.4-3) ... 175s Selecting previously unselected package libsz2:amd64. 175s Preparing to unpack .../106-libsz2_1.1.5-1_amd64.deb ... 175s Unpacking libsz2:amd64 (1.1.5-1) ... 175s Selecting previously unselected package libhdf5-310:amd64. 175s Preparing to unpack .../107-libhdf5-310_1.14.6+repack-2_amd64.deb ... 175s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 175s Selecting previously unselected package libcbf1t64:amd64. 175s Preparing to unpack .../108-libcbf1t64_0.9.7+dfsg1-5.1_amd64.deb ... 175s Unpacking libcbf1t64:amd64 (0.9.7+dfsg1-5.1) ... 175s Selecting previously unselected package libccp4-data. 175s Preparing to unpack .../109-libccp4-data_8.0.0-5build1_all.deb ... 175s Unpacking libccp4-data (8.0.0-5build1) ... 175s Selecting previously unselected package libccp4c0t64:amd64. 175s Preparing to unpack .../110-libccp4c0t64_8.0.0-5build1_amd64.deb ... 175s Unpacking libccp4c0t64:amd64 (8.0.0-5build1) ... 175s Selecting previously unselected package libmmdb2-0:amd64. 175s Preparing to unpack .../111-libmmdb2-0_2.0.22-1build1_amd64.deb ... 175s Unpacking libmmdb2-0:amd64 (2.0.22-1build1) ... 175s Selecting previously unselected package libccp4f0t64:amd64. 175s Preparing to unpack .../112-libccp4f0t64_8.0.0-5build1_amd64.deb ... 175s Unpacking libccp4f0t64:amd64 (8.0.0-5build1) ... 175s Selecting previously unselected package libccp4-dev:amd64. 175s Preparing to unpack .../113-libccp4-dev_8.0.0-5build1_amd64.deb ... 175s Unpacking libccp4-dev:amd64 (8.0.0-5build1) ... 175s Selecting previously unselected package libcctbx0. 175s Preparing to unpack .../114-libcctbx0_2025.12+ds2+~3.26.0+ds1-3_amd64.deb ... 175s Unpacking libcctbx0 (2025.12+ds2+~3.26.0+ds1-3) ... 175s Selecting previously unselected package libcctbx-dev. 175s Preparing to unpack .../115-libcctbx-dev_2025.12+ds2+~3.26.0+ds1-3_amd64.deb ... 175s Unpacking libcctbx-dev (2025.12+ds2+~3.26.0+ds1-3) ... 175s Selecting previously unselected package liblcms2-2:amd64. 175s Preparing to unpack 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libdecor-0-0:amd64 (0.2.5-1) ... 175s Selecting previously unselected package libdouble-conversion3:amd64. 175s Preparing to unpack .../122-libdouble-conversion3_3.4.0-1_amd64.deb ... 175s Unpacking libdouble-conversion3:amd64 (3.4.0-1) ... 175s Selecting previously unselected package libpciaccess0:amd64. 175s Preparing to unpack .../123-libpciaccess0_0.18.1-1ubuntu3_amd64.deb ... 175s Unpacking libpciaccess0:amd64 (0.18.1-1ubuntu3) ... 175s Selecting previously unselected package libdrm-intel1:amd64. 175s Preparing to unpack .../124-libdrm-intel1_2.4.131-1_amd64.deb ... 175s Unpacking libdrm-intel1:amd64 (2.4.131-1) ... 175s Selecting previously unselected package libx11-xcb1:amd64. 175s Preparing to unpack .../125-libx11-xcb1_2%3a1.8.12-1build1_amd64.deb ... 175s Unpacking libx11-xcb1:amd64 (2:1.8.12-1build1) ... 175s Selecting previously unselected package libxcb-dri3-0:amd64. 175s Preparing to unpack .../126-libxcb-dri3-0_1.17.0-2ubuntu1_amd64.deb ... 175s Unpacking libxcb-dri3-0:amd64 (1.17.0-2ubuntu1) ... 175s Selecting previously unselected package libxcb-present0:amd64. 175s Preparing to unpack .../127-libxcb-present0_1.17.0-2ubuntu1_amd64.deb ... 175s Unpacking libxcb-present0:amd64 (1.17.0-2ubuntu1) ... 175s Selecting previously unselected package libxcb-randr0:amd64. 175s Preparing to unpack .../128-libxcb-randr0_1.17.0-2ubuntu1_amd64.deb ... 175s Unpacking libxcb-randr0:amd64 (1.17.0-2ubuntu1) ... 175s Selecting previously unselected package libxcb-sync1:amd64. 175s Preparing to unpack .../129-libxcb-sync1_1.17.0-2ubuntu1_amd64.deb ... 175s Unpacking libxcb-sync1:amd64 (1.17.0-2ubuntu1) ... 175s Selecting previously unselected package libxcb-xfixes0:amd64. 175s Preparing to unpack .../130-libxcb-xfixes0_1.17.0-2ubuntu1_amd64.deb ... 175s Unpacking libxcb-xfixes0:amd64 (1.17.0-2ubuntu1) ... 175s Selecting previously unselected package libxshmfence1:amd64. 175s Preparing to unpack .../131-libxshmfence1_1.3.3-1build1_amd64.deb ... 175s Unpacking libxshmfence1:amd64 (1.3.3-1build1) ... 175s Selecting previously unselected package mesa-libgallium:amd64. 175s Preparing to unpack .../132-mesa-libgallium_25.3.3-1ubuntu1_amd64.deb ... 175s Unpacking mesa-libgallium:amd64 (25.3.3-1ubuntu1) ... 175s Selecting previously unselected package libgbm1:amd64. 175s Preparing to unpack .../133-libgbm1_25.3.3-1ubuntu1_amd64.deb ... 175s Unpacking libgbm1:amd64 (25.3.3-1ubuntu1) ... 175s Selecting previously unselected package libegl-mesa0:amd64. 175s Preparing to unpack .../134-libegl-mesa0_25.3.3-1ubuntu1_amd64.deb ... 175s Unpacking libegl-mesa0:amd64 (25.3.3-1ubuntu1) ... 175s Selecting previously unselected package libepoxy0:amd64. 175s Preparing to unpack .../135-libepoxy0_1.5.10-2build1_amd64.deb ... 175s Unpacking libepoxy0:amd64 (1.5.10-2build1) ... 175s Selecting previously unselected package libogg0:amd64. 175s Preparing to unpack .../136-libogg0_1.3.6-2_amd64.deb ... 175s Unpacking libogg0:amd64 (1.3.6-2) ... 175s Selecting previously unselected package libflac14:amd64. 175s Preparing to unpack .../137-libflac14_1.5.0+ds-5_amd64.deb ... 175s Unpacking libflac14:amd64 (1.5.0+ds-5) ... 175s Selecting previously unselected package libvulkan1:amd64. 175s Preparing to unpack .../138-libvulkan1_1.4.335.0-1_amd64.deb ... 175s Unpacking libvulkan1:amd64 (1.4.335.0-1) ... 175s Selecting previously unselected package libgl1-mesa-dri:amd64. 175s Preparing to unpack .../139-libgl1-mesa-dri_25.3.3-1ubuntu1_amd64.deb ... 175s Unpacking libgl1-mesa-dri:amd64 (25.3.3-1ubuntu1) ... 175s Selecting previously unselected package libglvnd0:amd64. 175s Preparing to unpack .../140-libglvnd0_1.7.0-3_amd64.deb ... 175s Unpacking libglvnd0:amd64 (1.7.0-3) ... 175s Selecting previously unselected package libxcb-glx0:amd64. 175s Preparing to unpack .../141-libxcb-glx0_1.17.0-2ubuntu1_amd64.deb ... 175s Unpacking libxcb-glx0:amd64 (1.17.0-2ubuntu1) ... 175s Selecting previously unselected package libxxf86vm1:amd64. 175s Preparing to unpack .../142-libxxf86vm1_1%3a1.1.4-2_amd64.deb ... 175s Unpacking libxxf86vm1:amd64 (1:1.1.4-2) ... 175s Selecting previously unselected package libglx-mesa0:amd64. 175s Preparing to unpack .../143-libglx-mesa0_25.3.3-1ubuntu1_amd64.deb ... 175s Unpacking libglx-mesa0:amd64 (25.3.3-1ubuntu1) ... 175s Selecting previously unselected package libglx0:amd64. 175s Preparing to unpack .../144-libglx0_1.7.0-3_amd64.deb ... 175s Unpacking libglx0:amd64 (1.7.0-3) ... 175s Selecting previously unselected package libgl1:amd64. 175s Preparing to unpack .../145-libgl1_1.7.0-3_amd64.deb ... 175s Unpacking libgl1:amd64 (1.7.0-3) ... 175s Selecting previously unselected package libglew2.2:amd64. 175s Preparing to unpack .../146-libglew2.2_2.2.0-4build2_amd64.deb ... 175s Unpacking libglew2.2:amd64 (2.2.0-4build2) ... 175s Selecting previously unselected package libglut3.12:amd64. 175s Preparing to unpack .../147-libglut3.12_3.4.0-6_amd64.deb ... 175s Unpacking libglut3.12:amd64 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libpangoft2-1.0-0:amd64. 176s Preparing to unpack .../153-libpangoft2-1.0-0_1.57.0-1_amd64.deb ... 176s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ... 176s Selecting previously unselected package libpangocairo-1.0-0:amd64. 176s Preparing to unpack .../154-libpangocairo-1.0-0_1.57.0-1_amd64.deb ... 176s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ... 176s Selecting previously unselected package libwayland-cursor0:amd64. 176s Preparing to unpack .../155-libwayland-cursor0_1.24.0-2_amd64.deb ... 176s Unpacking libwayland-cursor0:amd64 (1.24.0-2) ... 176s Selecting previously unselected package libwayland-egl1:amd64. 176s Preparing to unpack .../156-libwayland-egl1_1.24.0-2_amd64.deb ... 176s Unpacking libwayland-egl1:amd64 (1.24.0-2) ... 176s Selecting previously unselected package libxcomposite1:amd64. 176s Preparing to unpack .../157-libxcomposite1_1%3a0.4.6-1build1_amd64.deb ... 176s Unpacking libxcomposite1:amd64 (1:0.4.6-1build1) ... 176s Selecting previously unselected package libxfixes3:amd64. 176s Preparing to unpack .../158-libxfixes3_1%3a6.0.0-2build2_amd64.deb ... 176s Unpacking libxfixes3:amd64 (1:6.0.0-2build2) ... 176s Selecting previously unselected package libxcursor1:amd64. 176s Preparing to unpack .../159-libxcursor1_1%3a1.2.3-1build1_amd64.deb ... 176s Unpacking libxcursor1:amd64 (1:1.2.3-1build1) ... 176s Selecting previously unselected package libxdamage1:amd64. 176s Preparing to unpack .../160-libxdamage1_1%3a1.1.7-1_amd64.deb ... 176s Unpacking libxdamage1:amd64 (1:1.1.7-1) ... 176s Selecting previously unselected package libxinerama1:amd64. 176s Preparing to unpack .../161-libxinerama1_2%3a1.1.4-3build2_amd64.deb ... 176s Unpacking libxinerama1:amd64 (2:1.1.4-3build2) ... 176s Selecting previously unselected package libxrandr2:amd64. 176s Preparing to unpack .../162-libxrandr2_2%3a1.5.4-1build1_amd64.deb ... 176s Unpacking libxrandr2:amd64 (2:1.5.4-1build1) ... 176s Selecting previously unselected package libgtk-3-common. 176s Preparing to unpack .../163-libgtk-3-common_3.24.50-1ubuntu2_all.deb ... 176s Unpacking libgtk-3-common (3.24.50-1ubuntu2) ... 176s Selecting previously unselected package libgtk-3-0t64:amd64. 176s Preparing to unpack .../164-libgtk-3-0t64_3.24.50-1ubuntu2_amd64.deb ... 176s Unpacking libgtk-3-0t64:amd64 (3.24.50-1ubuntu2) ... 176s Selecting previously unselected package libhdf5-hl-310:amd64. 176s Preparing to unpack .../165-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ... 176s Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 176s Selecting previously unselected package x11-common. 176s Preparing to unpack .../166-x11-common_1%3a7.7+24ubuntu1_all.deb ... 176s Unpacking x11-common (1:7.7+24ubuntu1) ... 176s Selecting previously unselected package libice6:amd64. 176s Preparing to unpack .../167-libice6_2%3a1.1.1-1build1_amd64.deb ... 176s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 176s Selecting previously unselected package libimagequant0:amd64. 176s Preparing to unpack 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libnetcdf22:amd64. 176s Preparing to unpack .../179-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 176s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 176s Selecting previously unselected package libnotify4:amd64. 176s Preparing to unpack .../180-libnotify4_0.8.8-1_amd64.deb ... 176s Unpacking libnotify4:amd64 (0.8.8-1) ... 176s Selecting previously unselected package libopus0:amd64. 176s Preparing to unpack .../181-libopus0_1.6.1-1_amd64.deb ... 176s Unpacking libopus0:amd64 (1.6.1-1) ... 176s Selecting previously unselected package libpcre2-16-0:amd64. 176s Preparing to unpack .../182-libpcre2-16-0_10.46-1_amd64.deb ... 176s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 176s Selecting previously unselected package libpcre2-32-0:amd64. 176s Preparing to unpack .../183-libpcre2-32-0_10.46-1_amd64.deb ... 176s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 176s Selecting previously unselected package libvorbis0a:amd64. 176s Preparing to unpack .../184-libvorbis0a_1.3.7-3build1_amd64.deb ... 176s Unpacking libvorbis0a:amd64 (1.3.7-3build1) ... 176s Selecting previously unselected package libvorbisenc2:amd64. 176s Preparing to unpack .../185-libvorbisenc2_1.3.7-3build1_amd64.deb ... 176s Unpacking libvorbisenc2:amd64 (1.3.7-3build1) ... 176s Selecting previously unselected package libsndfile1:amd64. 176s Preparing to unpack .../186-libsndfile1_1.2.2-4_amd64.deb ... 176s Unpacking libsndfile1:amd64 (1.2.2-4) ... 176s Selecting previously unselected package libpulse0:amd64. 176s Preparing to unpack .../187-libpulse0_1%3a17.0+dfsg1-2ubuntu4_amd64.deb ... 176s Unpacking libpulse0:amd64 (1:17.0+dfsg1-2ubuntu4) ... 176s Selecting previously unselected package libpython3.14-stdlib:amd64. 176s Preparing to unpack .../188-libpython3.14-stdlib_3.14.2-1_amd64.deb ... 176s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 176s Selecting previously unselected package libqhull-r8.0:amd64. 176s Preparing to unpack .../189-libqhull-r8.0_2020.2-8_amd64.deb ... 176s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 176s Selecting previously unselected package libqt5core5t64:amd64. 176s Preparing to unpack .../190-libqt5core5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 176s Unpacking libqt5core5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 176s Selecting previously unselected package libqt5dbus5t64:amd64. 176s Preparing to unpack .../191-libqt5dbus5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 176s Unpacking libqt5dbus5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 176s Selecting previously unselected package libegl1:amd64. 176s Preparing to unpack .../192-libegl1_1.7.0-3_amd64.deb ... 176s Unpacking libegl1:amd64 (1.7.0-3) ... 176s Selecting previously unselected package libqt5network5t64:amd64. 176s Preparing to unpack .../193-libqt5network5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 176s Unpacking libqt5network5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 176s Selecting previously unselected package libsm6:amd64. 176s Preparing to unpack .../194-libsm6_2%3a1.2.6-1build1_amd64.deb ... 176s Unpacking libsm6:amd64 (2:1.2.6-1build1) ... 176s Selecting previously unselected package libxcb-icccm4:amd64. 176s Preparing to unpack .../195-libxcb-icccm4_0.4.2-1build1_amd64.deb ... 176s Unpacking libxcb-icccm4:amd64 (0.4.2-1build1) ... 176s Selecting previously unselected package libxcb-util1:amd64. 176s Preparing to unpack .../196-libxcb-util1_0.4.1-1build1_amd64.deb ... 176s Unpacking libxcb-util1:amd64 (0.4.1-1build1) ... 176s Selecting previously unselected package libxcb-image0:amd64. 176s Preparing to unpack .../197-libxcb-image0_0.4.0-2build2_amd64.deb ... 176s Unpacking libxcb-image0:amd64 (0.4.0-2build2) ... 176s Selecting previously unselected package libxcb-keysyms1:amd64. 176s Preparing to unpack .../198-libxcb-keysyms1_0.4.1-1build1_amd64.deb ... 176s Unpacking libxcb-keysyms1:amd64 (0.4.1-1build1) ... 176s Selecting previously unselected package libxcb-render-util0:amd64. 176s Preparing to unpack .../199-libxcb-render-util0_0.3.10-1build1_amd64.deb ... 176s Unpacking libxcb-render-util0:amd64 (0.3.10-1build1) ... 176s Selecting previously unselected package libxcb-shape0:amd64. 176s Preparing to unpack .../200-libxcb-shape0_1.17.0-2ubuntu1_amd64.deb ... 176s Unpacking libxcb-shape0:amd64 (1.17.0-2ubuntu1) ... 176s Selecting previously unselected package libxcb-xinerama0:amd64. 176s Preparing to unpack .../201-libxcb-xinerama0_1.17.0-2ubuntu1_amd64.deb ... 176s Unpacking libxcb-xinerama0:amd64 (1.17.0-2ubuntu1) ... 176s Selecting previously unselected package libxcb-xinput0:amd64. 176s Preparing to unpack .../202-libxcb-xinput0_1.17.0-2ubuntu1_amd64.deb ... 176s Unpacking libxcb-xinput0:amd64 (1.17.0-2ubuntu1) ... 176s Selecting previously unselected package libxcb-xkb1:amd64. 176s Preparing to unpack .../203-libxcb-xkb1_1.17.0-2ubuntu1_amd64.deb ... 176s Unpacking libxcb-xkb1:amd64 (1.17.0-2ubuntu1) ... 176s Selecting previously unselected package libxkbcommon-x11-0:amd64. 177s Preparing to unpack .../204-libxkbcommon-x11-0_1.12.3-1_amd64.deb ... 177s Unpacking libxkbcommon-x11-0:amd64 (1.12.3-1) ... 177s Selecting previously unselected package libqt5gui5t64:amd64. 177s Preparing to unpack .../205-libqt5gui5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 177s Unpacking libqt5gui5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 177s Selecting previously unselected package libqt5widgets5t64:amd64. 177s Preparing to unpack .../206-libqt5widgets5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 177s Unpacking libqt5widgets5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 177s Selecting previously unselected package libqt5xml5t64:amd64. 177s Preparing to unpack .../207-libqt5xml5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 177s Unpacking libqt5xml5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 177s Selecting previously unselected package libqt5designer5:amd64. 177s Preparing to unpack .../208-libqt5designer5_5.15.18-1_amd64.deb ... 177s Unpacking libqt5designer5:amd64 (5.15.18-1) ... 177s Selecting previously unselected package libqt5sql5t64:amd64. 177s Preparing to unpack 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previously unselected package libraqm0:amd64. 177s Preparing to unpack .../214-libraqm0_0.10.3-1build1_amd64.deb ... 177s Unpacking libraqm0:amd64 (0.10.3-1build1) ... 177s Selecting previously unselected package libsamplerate0:amd64. 177s Preparing to unpack .../215-libsamplerate0_0.2.2-4build2_amd64.deb ... 177s Unpacking libsamplerate0:amd64 (0.2.2-4build2) ... 177s Selecting previously unselected package libxss1:amd64. 177s Preparing to unpack .../216-libxss1_1%3a1.2.3-1build4_amd64.deb ... 177s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 177s Selecting previously unselected package libsdl2-classic:amd64. 177s Preparing to unpack .../217-libsdl2-classic_2.32.10+dfsg-6_amd64.deb ... 177s Unpacking libsdl2-classic:amd64 (2.32.10+dfsg-6) ... 177s Selecting previously unselected package libsdl2-2.0-0:amd64. 177s Preparing to unpack .../218-libsdl2-2.0-0_2.32.10+dfsg-6_amd64.deb ... 177s Unpacking libsdl2-2.0-0:amd64 (2.32.10+dfsg-6) ... 177s Selecting previously unselected package libssm2:amd64. 177s Preparing to unpack .../219-libssm2_1.4.0-2build2_amd64.deb ... 177s Unpacking libssm2:amd64 (1.4.0-2build2) ... 177s Selecting previously unselected package libtcl8.6:amd64. 177s Preparing to unpack .../220-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 177s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 177s Selecting previously unselected package libxft2:amd64. 177s Preparing to unpack .../221-libxft2_2.3.6-1build2_amd64.deb ... 177s Unpacking libxft2:amd64 (2.3.6-1build2) ... 177s Selecting previously unselected package libtk8.6:amd64. 177s Preparing to unpack .../222-libtk8.6_8.6.17-1_amd64.deb ... 177s Unpacking libtk8.6:amd64 (8.6.17-1) ... 177s Selecting previously unselected package libwebpdemux2:amd64. 177s Preparing to unpack .../223-libwebpdemux2_1.5.0-0.1build1_amd64.deb ... 177s Unpacking libwebpdemux2:amd64 (1.5.0-0.1build1) ... 177s Selecting previously unselected package libwebpmux3:amd64. 177s Preparing to unpack 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Selecting previously unselected package python3-brotli. 177s Preparing to unpack .../235-python3-brotli_1.1.0-2build6_amd64.deb ... 177s Unpacking python3-brotli (1.1.0-2build6) ... 177s Selecting previously unselected package python3-legacy-cgi. 177s Preparing to unpack .../236-python3-legacy-cgi_2.6.4-2_all.deb ... 177s Unpacking python3-legacy-cgi (2.6.4-2) ... 177s Selecting previously unselected package python3-pycbf. 177s Preparing to unpack .../237-python3-pycbf_0.9.7+dfsg1-5.1_amd64.deb ... 177s Unpacking python3-pycbf (0.9.7+dfsg1-5.1) ... 177s Selecting previously unselected package python3-h5py-serial. 177s Preparing to unpack .../238-python3-h5py-serial_3.15.1-4_amd64.deb ... 177s Unpacking python3-h5py-serial (3.15.1-4) ... 177s Selecting previously unselected package python3-h5py. 177s Preparing to unpack .../239-python3-h5py_3.15.1-4_all.deb ... 177s Unpacking python3-h5py (3.15.1-4) ... 177s Selecting previously unselected package python3-hdf5plugin. 177s Preparing to unpack .../240-python3-hdf5plugin_5.1.0-1_all.deb ... 177s Unpacking python3-hdf5plugin (5.1.0-1) ... 177s Selecting previously unselected package libopenjp2-7:amd64. 177s Preparing to unpack .../241-libopenjp2-7_2.5.4-1_amd64.deb ... 177s Unpacking libopenjp2-7:amd64 (2.5.4-1) ... 177s Selecting previously unselected package python3-pil:amd64. 177s Preparing to unpack .../242-python3-pil_12.0.0-1ubuntu1_amd64.deb ... 177s Unpacking python3-pil:amd64 (12.0.0-1ubuntu1) ... 177s Selecting previously unselected package python3.13-tk. 178s Preparing to unpack .../243-python3.13-tk_3.13.11-1_amd64.deb ... 178s Unpacking python3.13-tk (3.13.11-1) ... 178s Selecting previously unselected package python3.14-tk. 178s Preparing to unpack .../244-python3.14-tk_3.14.2-1_amd64.deb ... 178s Unpacking python3.14-tk (3.14.2-1) ... 178s Selecting previously unselected package python3-tk. 178s Preparing to unpack .../245-python3-tk_3.13.9-3_amd64.deb ... 178s Unpacking python3-tk (3.13.9-3) ... 178s Selecting previously unselected package python3-pil.imagetk:amd64. 178s Preparing to unpack .../246-python3-pil.imagetk_12.0.0-1ubuntu1_amd64.deb ... 178s Unpacking python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 178s Selecting previously unselected package python3-contourpy. 178s Preparing to unpack .../247-python3-contourpy_1.3.3-1_amd64.deb ... 178s Unpacking python3-contourpy (1.3.3-1) ... 178s Selecting previously unselected package python3-cycler. 178s Preparing to unpack .../248-python3-cycler_0.12.1-2_all.deb ... 178s Unpacking python3-cycler (0.12.1-2) ... 178s Selecting previously unselected package python3-lxml:amd64. 178s Preparing to unpack .../249-python3-lxml_6.0.2-1_amd64.deb ... 178s Unpacking python3-lxml:amd64 (6.0.2-1) ... 178s Selecting previously unselected package python3-lz4. 178s Preparing to unpack .../250-python3-lz4_4.4.5+dfsg-1_amd64.deb ... 178s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 178s Selecting previously unselected package python3-decorator. 178s 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178s Selecting previously unselected package unicode-data. 178s Preparing to unpack .../257-unicode-data_16.0.0-1build1_all.deb ... 178s Unpacking unicode-data (16.0.0-1build1) ... 178s Selecting previously unselected package python3-fonttools. 178s Preparing to unpack .../258-python3-fonttools_4.61.1-3_amd64.deb ... 178s Unpacking python3-fonttools (4.61.1-3) ... 178s Selecting previously unselected package python3-kiwisolver. 178s Preparing to unpack .../259-python3-kiwisolver_1.4.10~rc0-1_amd64.deb ... 178s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 178s Selecting previously unselected package python3-matplotlib. 178s Preparing to unpack .../260-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 178s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 179s Selecting previously unselected package sphinx-rtd-theme-common. 179s Preparing to unpack .../261-sphinx-rtd-theme-common_3.0.2+dfsg-3_all.deb ... 179s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-3) ... 179s Selecting previously unselected package python3-mrcfile. 179s Preparing to unpack .../262-python3-mrcfile_1.5.4-2_all.deb ... 179s Unpacking python3-mrcfile (1.5.4-2) ... 179s Selecting previously unselected package python3-natsort. 179s Preparing to unpack .../263-python3-natsort_8.4.0-2_all.deb ... 179s Unpacking python3-natsort (8.4.0-2) ... 179s Selecting previously unselected package python3-flexcache. 179s Preparing to unpack .../264-python3-flexcache_0.3-3_all.deb ... 179s Unpacking python3-flexcache (0.3-3) ... 179s Selecting previously unselected package python3-flexparser. 179s Preparing to unpack .../265-python3-flexparser_0.4-2_all.deb ... 179s Unpacking python3-flexparser (0.4-2) ... 179s Selecting previously unselected package python3-platformdirs. 179s Preparing to unpack .../266-python3-platformdirs_4.5.1-1_all.deb ... 179s Unpacking python3-platformdirs (4.5.1-1) ... 179s Selecting previously unselected package python3-pint. 179s Preparing to unpack .../267-python3-pint_0.25.2-2_all.deb 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libboost-regex1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 205s Setting up libpython3-dev:amd64 (3.13.9-3) ... 205s Setting up libqt5widgets5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 205s Setting up libboost-test1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 205s Setting up python3.13-dev (3.13.11-1) ... 205s Setting up libqt5help5:amd64 (5.15.18-1) ... 205s Setting up python3-dev (3.13.9-3) ... 205s Setting up g++ (4:15.2.0-4ubuntu1) ... 205s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 205s Setting up libqt5opengl5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 205s Setting up libqt5printsupport5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 205s Setting up libboost-graph1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 205s Setting up libqt5designer5:amd64 (5.15.18-1) ... 205s Setting up libboost-python1.88-dev (1.88.0-1.4ubuntu3) ... 205s Setting up python3-pyqt5 (5.15.11+dfsg-3build2) ... 205s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-3build2) ... 205s Setting up libboost-python-dev (1.88.0.0ubuntu3) ... 205s Setting up python3-pymol (3.1.0+dfsg-1build2) ... 206s Setting up libcctbx-dev (2025.12+ds2+~3.26.0+ds1-3) ... 206s Setting up python3-fonttools (4.61.1-3) ... 207s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 207s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 209s Processing triggers for libc-bin (2.42-2ubuntu4) ... 209s Processing triggers for systemd (259-1ubuntu3) ... 209s Processing triggers for man-db (2.13.1-1) ... 210s Processing triggers for libglib2.0-0t64:amd64 (2.86.3-4) ... 210s Setting up libgtk-3-0t64:amd64 (3.24.50-1ubuntu2) ... 210s Processing triggers for udev (259-1ubuntu3) ... 211s Setting up libwxgtk3.2-1t64:amd64 (3.2.9+dfsg-1) ... 211s Setting up libwxgtk-gl3.2-1t64:amd64 (3.2.9+dfsg-1) ... 211s Setting up python3-wxgtk4.0 (4.2.4+dfsg-1) ... 212s Setting up python3-cctbx (2025.12+ds2+~3.26.0+ds1-3) ... 220s /usr/lib/python3/dist-packages/cootbx/interactive_edit.py:48: SyntaxWarning: 'return' in a 'finally' block 220s return new_text 222s /usr/lib/python3/dist-packages/libtbx/utils.py:2433: SyntaxWarning: 'return' in a 'finally' block 222s return new_text 222s /usr/lib/python3/dist-packages/libtbx/utils.py:2472: SyntaxWarning: 'return' in a 'finally' block 222s return new_text 293s Processing triggers for libc-bin (2.42-2ubuntu4) ... 294s autopkgtest [00:16:33]: test cctbx: [----------------------- 294s Testing cctbx with python3.14: 295s Running 553 tests on 2 processors: 295s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py" 295s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py" 295s "/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy" 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py" 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py" 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py" 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py" 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py" 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py" 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py" 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py" 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/math/boost_python/tst_math.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_targets_fd.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_N_fold_rot.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_chemical_elements.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_henke.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_icsd_radii.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_covalent_radii.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_neutron.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_sasaki.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_tiny_pse.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_wavelengths.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_motif.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_math_module.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_coordination_sequences.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem_2.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_pickling.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_epsilon.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_hl.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/run_shelx76.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/observations/tst_observations.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_box.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_create_models_or_maps.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/merging/brehm_diederichs.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/multipolar/regression/tst_multipolar.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications_rm.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wavelength_units.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py" 295s libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py" 295s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_ext.py" 295s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_equivalence.py" 295s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_read.py" 295s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout.py" 295s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_show_calls.py" 295s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_command_line.py" 295s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py" 295s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout_compile.py" stop 295s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_io.py" 295s libtbx.python "/usr/lib/python3/dist-packages/gltbx/tst_ellipsoids.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_wildcard.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_parser.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_cells.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_2.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_2.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_3.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_4.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_cif.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_patterson.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_restraints_merge.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ranges.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py" 295s libtbx.python 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"/usr/lib/python3/dist-packages/iotbx/mtz/tst.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/tst_mtz_free_flipper.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_adsc.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_detectors.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xplor/tst_xplormap.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phases.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_plots.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_csv_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_bioinformatics.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_input.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_multimodel.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_add_conformations.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_symmetry.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reindex.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_editor.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_fasta.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_link_records.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_merging_statistics.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_map_coefficients.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xparm.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xds_inp.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_spots_xds.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_cif.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_input.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_reader.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_xray_scale.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_alignment_as_hsearch.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ncbi_blast_xml.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/pdb_info.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_1.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_all_chain_ids.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_extract_xtal_data.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cli_parser.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mtz_as_cif.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_group_rounding.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py" 295s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_id_str.py" 295s libtbx.python 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"/usr/lib/python3/dist-packages/libtbx/introspection.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_thread_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_state.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_pickle.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_fully_buffered_timeout.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_add_docstrings_with_ai.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_scheduling.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/easy_run.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_containers.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_path.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_math_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/assert_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_str_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/table_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_dlite.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_tokenizer.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_experimental.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_interface.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_object_oriented_patterns.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/find_reference_cycles.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_binary_search.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_topological_sort.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/clusterTests.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_citations.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_python_code_parsing.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_representation.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_find_unused_imports.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_program_template.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_version.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_multicore.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_runtime_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_smoothing.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_basic.py" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_3" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_5" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_sym_mat3" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_optional_copy" 295s "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_rectangular_full_packed" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py" 295s "/usr/lib/cctbx/python3.14/scitbx/serialization/tst_base_256" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_cubic_equation.py" 295s "/usr/lib/cctbx/python3.14/scitbx/math/tests/tst" 295s "/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens" 295s "/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_householder" 295s "/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd" 295s "/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_cholesky" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_row_echelon.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_householder.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_matrix.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_cholesky.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_svd.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_eigensystem.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/error/tst_error.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_map.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_set.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_vector.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/regression_test.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_shared.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_cubicle_neighbors.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_r3_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/__init__.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_random_transform.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_graph.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_robust.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/superpose.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/spe.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/incremental_SO3_sampling.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_curve_fitting.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_weighted_correlation.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_similarity_indices.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_exp_functions.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gcd.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_math.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_r3_rotation.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_resample.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_line_search.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_quadrature.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_bessel.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_halton.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_euler_angles.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_superpose.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike_mom.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/sieve_of_eratosthenes.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/besselk.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/scale_curves.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_peak.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_clustering.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_g_function.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_angle_derivative.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_periodogram.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_tetrahedron.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_undirected_graph.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_so3_lie_algebra.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/minpack/tst.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_ext.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_curvatures.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py" 295s "/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgsb/boost_python/tst_lbfgsb.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/fftpack/boost_python/tst_fftpack.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_grid.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_array_loops.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/principal_axes_of_inertia.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_recipe.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/chebyshev_lsq_example.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/immoptibox_ports.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/rigid_body_refinement_core.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/minimizer_comparisons.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_rigidity.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/test_cases_tardy_pdb.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_basic.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_tardy.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/tst.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_singular.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_molecules.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_sparse.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/iso_surface/tst_iso_surface.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/simplex.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/differential_evolution.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/golden_section_search.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_minimizer_lbfgs_general.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/direct_search_simulated_annealing.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/random/tests/tst_random.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/test_problems.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/glmtbx/tests/tst.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py" 295s libtbx.python "/usr/lib/python3/dist-packages/scitbx/suffixtree/test/tst_single.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py" --fix_random_seeds 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py" --fix_seed --on=E "hall: P 1" "hall: P 3" "hall: -P 2ybc" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py" --fix_random_seeds 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py" 295s "/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py" 295s "/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py" 295s "/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=naive 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=levenberg-marquardt 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py" --verbose --scatterers=5 --resolution=0.2 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py" 295s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_least_squares.py" 295s libtbx.python "/usr/lib/python3/dist-packages/rstbx/dps_core/tst_iotbx_converter.py" 295s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_predict.py" 295s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_ewald_sphere.py" 295s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_partial_derivatives.py" 295s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py" 295s libtbx.python "/usr/lib/python3/dist-packages/rstbx/sublattice_support/tst_sublattice.py" 295s libtbx.python -c "from rstbx.run_tests import run; run()" 295s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/core_toolbox/boost_python/tst_small_image.py" 295s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/diffraction/geometry.py" 295s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/math_support/sphere_formulae.py" 295s 295s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py" [OK] 0.2s 295s Time: 0.17 295s Return code: 0 295s OKs: 1 295s Standard out: 295s OK 295s "/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy" [OK] 0.0s 295s Time: 0.00 295s Return code: 0 295s OKs: 1 295s Standard out: 295s OK 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py" [OK] 0.0s 295s Time: 0.04 295s Return code: 0 295s OKs: 1 295s Standard out: 295s OK 295s Standard error: 295s show_stack(1): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(9) run 295s show_stack(2): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(15) 295s libc backtrace (20 frames, most recent call last): 295s /usr/bin/python3.13(_start+0x25) [0x6a01f5] 295s /usr/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x88) [0x7d0183e2a628] 295s /usr/lib/x86_64-linux-gnu/libc.so.6(+0x2a575) [0x7d0183e2a575] 295s /usr/bin/python3.13(Py_BytesMain+0x34) [0x6a0e74] 295s /usr/bin/python3.13(Py_RunMain+0x342) [0x6d3ac2] 295s /usr/bin/python3.13() [0x6d4945] 295s /usr/bin/python3.13() [0x6d4b08] 295s /usr/bin/python3.13() [0x6d5105] 295s /usr/bin/python3.13() [0x6c38b1] 295s /usr/bin/python3.13() [0x6c6a45] 295s /usr/bin/python3.13(PyEval_EvalCode+0xc3) [0x56f733] 295s /usr/bin/python3.13(_PyEval_EvalFrameDefault+0x26c9) [0x575d49] 295s /usr/bin/python3.13(_PyObject_MakeTpCall+0x28d) [0x55928d] 295s /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(+0x2439e) [0x7d01836ae39e] 295s /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(boost::python::handle_exception_impl(boost::function_n)+0x6b) [0x7d01836ae2ab] 295s /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(+0x270e4) [0x7d01836b10e4] 295s /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(boost::python::objects::function::call(_object*, _object*) const+0xe6) [0x7d01836b0cb6] 295s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-x86_64-linux-gnu.so(+0x21480) [0x7d01836e9480] 295s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-x86_64-linux-gnu.so(+0x20fa8) [0x7d01836e8fa8] 295s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-x86_64-linux-gnu.so(+0x16477) [0x7d01836de477] 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py" [OK] 0.1s 295s Time: 0.08 295s Return code: 0 295s OKs: 1 295s Standard out: 295s OK 295s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py" [OK] 0.3s 295s Time: 0.32 295s Return code: 0 295s OKs: 1 295s Standard out: 295s OK 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py" [OK] 0.1s 295s Time: 0.06 295s Return code: 0 295s OKs: 1 295s Standard out: 295s exercise_wstring: 295s OK 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py" [OK] 0.1s 295s Time: 0.07 295s Return code: 0 295s OKs: 1 295s Standard out: 295s OK 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py" [OK] 0.0s 295s Time: 0.04 295s Return code: 0 295s OKs: 1 295s Standard out: 295s OK 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py" [OK] 0.0s 295s Time: 0.04 295s Return code: 0 295s OKs: 1 295s Standard out: 295s OK 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py" [OK] 0.1s 295s Time: 0.09 295s Return code: 0 295s OKs: 1 295s Standard out: 295s OK 295s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py" [OK] 0.0s 295s Time: 0.05 295s Return code: 0 295s OKs: 1 295s Standard out: 295s OK 297s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 297s 1 297s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 297s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py" [EXPECTED FAIL] 1.6s 297s Time: 1.59 297s Return code: 1 297s OKs: 0 297s Standard error: 297s Traceback (most recent call last): 297s File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 230, in 297s run(sys.argv[1:]) 297s ~~~^^^^^^^^^^^^^^ 297s File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 218, in run 297s stringio_test_case().run() 297s ~~~~~~~~~~~~~~~~~~~~~~~~^^ 297s File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 40, in run 297s self.exercise_read() 297s ~~~~~~~~~~~~~~~~~~^^ 297s File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 49, in exercise_read 297s words = ext.test_read(streambuf(self.file_object), "read") 297s ValueError: The method 'read' of the Python file object did not return a string. 297s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" [OK] 0.6s 297s Time: 0.60 297s Return code: 0 297s OKs: 0 297s Standard out: 297s 297s remove_fraction: 0.2 297s 297s data incompleteness: random ------------------------------ 297s number of all data: 1054 297s number of incomplete data: 838 297s start CC(exact_map, poor_map): 0.8753159347112118 297s start CC(exact_map, filled_map)1: 0.9941840680053347 297s start CC(exact_map, filled_map)2: 0.9935047895000535 297s 297s data incompleteness: smallest ------------------------------ 297s number of all data: 1054 297s number of incomplete data: 844 297s start CC(exact_map, poor_map): 0.9980218160516707 297s start CC(exact_map, filled_map)1: 0.9999748740662823 297s start CC(exact_map, filled_map)2: 0.9999968130612383 297s 297s data incompleteness: highest ------------------------------ 297s number of all data: 1054 297s number of incomplete data: 844 297s start CC(exact_map, poor_map): 0.3818786913107765 297s start CC(exact_map, filled_map)1: 0.9971830786189367 297s start CC(exact_map, filled_map)2: 0.9959849263224512 297s 297s remove_fraction: 0.5 297s 297s data incompleteness: random ------------------------------ 297s number of all data: 1054 297s number of incomplete data: 523 297s start CC(exact_map, poor_map): 0.7024936193718077 297s start CC(exact_map, filled_map)1: 0.8916805442925303 297s start CC(exact_map, filled_map)2: 0.9915957518073099 297s 297s data incompleteness: smallest ------------------------------ 297s number of all data: 1054 297s number of incomplete data: 527 297s start CC(exact_map, poor_map): 0.9880878743856928 297s start CC(exact_map, filled_map)1: 0.9055971624641237 297s start CC(exact_map, filled_map)2: 0.9997105797127656 297s 297s data incompleteness: highest ------------------------------ 297s number of all data: 1054 297s number of incomplete data: 527 297s start CC(exact_map, poor_map): 0.1538907160682784 297s start CC(exact_map, filled_map)1: 0.7754322280259367 297s start CC(exact_map, filled_map)2: 0.9987051173664472 312s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" [OK] 16.8s 312s Time: 16.82 312s Return code: 0 312s OKs: 0 312s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" [OK] 0.3s 312s Time: 0.35 312s Return code: 0 312s OKs: 1 312s Standard out: 312s OK 313s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py" [OK] 0.4s 313s Time: 0.44 313s Return code: 0 313s OKs: 1 313s Standard out: 313s OK 322s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" [OK] 8.7s 322s Time: 8.72 322s Return code: 0 322s OKs: 0 322s Standard out: 322s (14.5791, 18.9529, 24.7845, 83, 109, 129) 322s cc_map_data_from_shifted_xrs_shifted_map_data 0.9999563039408415 322s ************************* 322s P 1 322s (14.5791, 18.9529, 24.7845, 83, 109, 129) 322s datat in: 3097 322s data left: 1627 322s ************************* 322s P -1 322s (18.3685, 23.8791, 31.2265, 83, 109, 129) 322s datat in: 6205 322s data left: 3707 322s ************************* 322s P 1 2 1 322s (16.8518, 21.9073, 28.648, 90, 109, 90) 322s datat in: 3267 322s data left: 1651 322s ************************* 322s C 1 2/c 1 322s (26.7505, 34.7757, 45.4759, 90, 109, 90) 322s datat in: 6209 322s data left: 1734 322s ************************* 322s P 2 2 2 322s (20.8391, 27.0908, 35.4265, 90, 90, 90) 322s datat in: 3510 322s data left: 1980 322s ************************* 322s I m m a 322s (33.08, 43.004, 56.2361, 90, 90, 90) 322s datat in: 6585 322s data left: 6341 322s ************************* 322s P 4 322s (22.7437, 22.7437, 38.6642, 90, 90, 90) 322s datat in: 3214 322s data left: 821 322s ************************* 322s P 41 322s (22.7437, 22.7437, 38.6642, 90, 90, 90) 322s datat in: 3195 322s data left: 2815 322s ************************* 322s I 41/a c d :2 322s (45.4873, 45.4873, 77.3284, 90, 90, 90) 322s datat in: 6220 322s data left: 4633 322s ************************* 322s P 3 322s (21.6789, 21.6789, 36.8541, 90, 90, 120) 322s datat in: 3123 322s data left: 231 322s ************************* 322s P 31 322s (21.6789, 21.6789, 36.8541, 90, 90, 120) 322s datat in: 3107 322s data left: 2647 322s ************************* 322s P 3 1 m 322s (27.3137, 27.3137, 46.4333, 90, 90, 120) 322s datat in: 3341 322s data left: 1041 322s ************************* 322s R -3 c :H 322s (49.6323, 49.6323, 84.3749, 90, 90, 120) 322s datat in: 6214 322s data left: 504 322s ************************* 322s P 6 322s (27.3137, 27.3137, 46.4333, 90, 90, 120) 322s datat in: 3204 322s data left: 2272 322s ************************* 322s P 63/m m c 322s (43.3578, 43.3578, 73.7083, 90, 90, 120) 322s datat in: 6794 322s data left: 405 322s ************************* 322s P 2 3 322s (39.1487, 39.1487, 39.1487, 90, 90, 90) 322s datat in: 3389 322s data left: 694 322s ************************* 322s I a -3 d 322s (78.2974, 78.2974, 78.2974, 90, 90, 90) 322s datat in: 6220 322s data left: 3933 322s ************************* 322s I 4/m c m (a+b-1/6,-a+b,c+1/4) 322s (64.3288, 64.3288, 77.3284, 90, 90, 90) 322s datat in: 6535 322s data left: 5391 322s ************************* 322s u+s,u,s: 8.64 8.50 0.14 322s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" [OK] 0.1s 322s Time: 0.11 322s Return code: 0 322s OKs: 1 322s Standard out: 322s OK 322s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 [OK] 0.5s 322s Time: 0.49 322s Return code: 0 322s OKs: 0 322s Standard out: 322s general_positions_only = True 322s shake_sites_rmsd = 0.5 322s shake_adp_spread = 20 322s show_distances_threshold = 0 322s bulk_solvent_correction = False 322s target { 322s type = *ls cc r1 322s obs_type = *F I 322s weighting_scheme = *unit shelxl_wght shelxl_wght_once 322s } 322s iteration_limit = 50 322s grads_mean_sq_threshold = 1e-06 322s use_classic_lbfgs = False 322s use_lbfgs_emulation = False 322s use_curvs = True 322s approx_quad_limit_factor = 1.0 322s bfgs_estimate_limit_factor = 1.0 322s use_line_search = False 322s use_gradient_flips = True 322s try_approx_curvs = False 322s show_dests = False 322s show_distances_to_reference_structure = False 322s f_calc_options { 322s algorithm = *direct fft 322s cos_sin_table = False 322s } 322s plot_samples { 322s stages = initial final 322s ix = None 322s ix_auto = all random 322s ix_random { 322s samples_each_scattering_type = 3 322s random_seed = 0 322s } 322s target { 322s type = *Auto ls cc r1 ml 322s obs_type = *Auto F I 322s weighting_scheme = *Auto unit shelxl_wght shelxl_wght_once 322s } 322s x_radius = 5 322s x_steps = 100 322s u_min = -0.05 322s u_max = 0.45 322s u_steps = 100 322s file_prefix = None 322s pyplot = *gui pdf 322s } 322s 322s P 31 322s Ideal structure: 322s Number of scatterers: 3 322s At special positions: 0 322s Unit cell: (10.693, 10.693, 18.178, 90, 90, 120) 322s Space group: P 31 (No. 144) 322s Label, Scattering, Multiplicity, Coordinates, Occupancy, Uiso, Ustar as Uiso 322s N1 N 3 ( 0.8444 0.7580 0.4206) 1.00 0.1750 [ - ] 322s C2 C 3 ( 0.2589 0.5113 0.4049) 1.00 0.2724 [ - ] 322s O3 O 3 ( 0.7838 0.3033 0.4766) 1.00 0.1514 [ - ] 322s 322s Modified structure: 322s Number of scatterers: 3 322s At special positions: 0 322s Unit cell: (10.693, 10.693, 18.178, 90, 90, 120) 322s Space group: P 31 (No. 144) 322s Label, Scattering, Multiplicity, Coordinates, Occupancy, Uiso, Ustar as Uiso 322s N1 N 3 ( 0.8485 0.7815 0.3934) 1.00 0.2297 [ - ] 322s C2 C 3 ( 0.2218 0.4736 0.3828) 1.00 0.0838 [ - ] 322s O3 O 3 ( 0.7466 0.2868 0.4710) 1.00 0.2151 [ - ] 322s 322s rms difference: 0.49999999999999994 322s 322s cRMSD aRMSD uRMSD 322s 0.500 0.373 0.119 r1=0.4555 322s Number of variables: 12 322s 1: 0.422 0.287 0.101 f=9.30e-02 |g|=5.62e-01 r1=0.3613 aq(6, -2) 322s 2: 0.366 0.239 0.065 f=5.94e-02 |g|=6.84e-01 r1=0.3170 aq(5, 5) 322s 3: 0.308 0.167 0.042 f=2.93e-02 |g|=2.25e-01 r1=0.2170 aq(3, 2) 322s 4: 0.283 0.098 0.008 f=8.12e-03 |g|=9.46e-02 r1=0.1157 aq(5, 3) 322s 5: 0.288 0.050 0.005 f=1.96e-03 |g|=2.81e-02 r1=0.0548 aq(5, 5) 322s 6: 0.278 0.010 0.004 f=1.31e-04 |g|=1.64e-03 r1=0.0154 aq(5, 5) 322s 7: 0.279 0.009 0.001 f=9.99e-05 |g|=3.01e-03 r1=0.0127 aq(2, 2) 322s 8: 0.278 0.005 0.000 f=1.33e-05 |g|=1.33e-04 r1=0.0042 aq(1, -2) 322s 9: 0.278 0.003 0.000 f=4.37e-06 |g|=4.63e-05 r1=0.0024 aq(4, 4) 322s 10: 0.278 0.002 0.000 f=1.28e-06 |g|=1.27e-05 r1=0.0013 aq(4, 4) 322s 11: 0.278 0.001 0.000 f=6.66e-07 |g|=3.87e-06 r1=0.0008 aq(3, -1) 322s 12: 0.278 0.001 0.000 f=3.37e-07 |g|=2.92e-06 r1=0.0007 aq(2, 2) 322s 13: 0.278 0.001 0.000 f=1.16e-07 |g|=9.81e-07 r1=0.0004 aq(1, -2) 322s Number of iterations, evaluations: 13 14 322s R1: 0.0004 322s 322s u+s,u,s: 0.41 0.37 0.04 323s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" [OK] 0.4s 323s Time: 0.37 323s Return code: 0 323s OKs: 1 323s Standard out: 323s OK 323s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" [OK] 0.4s 323s Time: 0.35 323s Return code: 0 323s OKs: 1 323s Standard out: 323s OK 395s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" [OK] 97.8s 395s Time: 97.78 395s Return code: 0 395s OKs: 1 395s Standard out: 395s For periodic.. True: 226 None: 4 False: 0 395s For aperiodic.. True: 0 None: 11 False: 219 395s OK 10302s autopkgtest [03:03:21]: ERROR: timed out on command "su -s /bin/bash ubuntu -c set -e; exec /tmp/autopkgtest.fP5nLD/wrapper.sh --artifacts=/tmp/autopkgtest.fP5nLD/cctbx-artifacts --chdir=/tmp/autopkgtest.fP5nLD/build.UmG/src --env=AUTOPKGTEST_TESTBED_ARCH=amd64 --env=AUTOPKGTEST_TEST_ARCH=amd64 --env=DEB_BUILD_OPTIONS=parallel=2 --env=DEBIAN_FRONTEND=noninteractive --env=LANG=C.UTF-8 --unset-env=LANGUAGE --unset-env=LC_ADDRESS --unset-env=LC_ALL --unset-env=LC_COLLATE --unset-env=LC_CTYPE --unset-env=LC_IDENTIFICATION --unset-env=LC_MEASUREMENT --unset-env=LC_MESSAGES --unset-env=LC_MONETARY --unset-env=LC_NAME --unset-env=LC_NUMERIC --unset-env=LC_PAPER --unset-env=LC_TELEPHONE --unset-env=LC_TIME --script-pid-file=/tmp/autopkgtest_script_pid --source-profile --stderr=/tmp/autopkgtest.fP5nLD/cctbx-stderr --stdout=/tmp/autopkgtest.fP5nLD/cctbx-stdout --tmp=/tmp/autopkgtest.fP5nLD/autopkgtest_tmp --env=ADT_TEST_TRIGGERS=tqdm/4.67.3-1 --make-executable=/tmp/autopkgtest.fP5nLD/build.UmG/src/debian/tests/cctbx -- /tmp/autopkgtest.fP5nLD/build.UmG/src/debian/tests/cctbx" (kind: test) 10302s autopkgtest [03:03:21]: test cctbx: -----------------------] 10306s autopkgtest [03:03:25]: test cctbx: - - - - - - - - - - results - - - - - - - - - - 10306s cctbx FAIL timed out 10306s autopkgtest [03:03:25]: test dxtbx: preparing testbed 10420s Creating nova instance adt-resolute-amd64-cctbx-20260207-001138-juju-7f2275-prod-proposed-migration-environment-2-224d840f-5834-4bc8-9e31-f89955f547cd from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 10497s autopkgtest [03:06:36]: testbed dpkg architecture: amd64 10497s autopkgtest [03:06:36]: testbed apt version: 3.1.14 10498s autopkgtest [03:06:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 10498s autopkgtest [03:06:37]: testbed release detected to be: resolute 10499s autopkgtest [03:06:38]: updating testbed package index (apt update) 10499s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 10499s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 10499s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 10499s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 10499s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB] 10499s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [206 kB] 10499s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [36.7 kB] 10499s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1703 kB] 10500s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [276 kB] 10500s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [195 kB] 10500s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6624 B] 10500s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB] 10500s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 10500s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 10500s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [585 kB] 10500s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1608 kB] 10500s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [37.1 kB] 10500s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [31.0 kB] 10500s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5456 B] 10500s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B] 10501s Fetched 4910 kB in 1s (3454 kB/s) 10502s Reading package lists... 10502s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 10502s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 10502s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 10502s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 10503s Reading package lists... 10503s Reading package lists... 10503s Building dependency tree... 10503s Reading state information... 10504s Calculating upgrade... 10504s The following packages will be upgraded: 10504s amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less 10504s libapt-pkg7.0 libattr1 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common 10504s libdrm2 libgpm2 libkeyutils1 libmaxminddb0 libnpth0t64 libsensors-config 10504s libsensors5 mawk patch pollinate python3-linkify-it python3-markdown-it 10504s python3-referencing sed tar 10504s 27 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 10504s Need to get 5981 kB of archives. 10504s After this operation, 270 kB disk space will be freed. 10504s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 10504s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 10504s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 10504s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 10504s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 10504s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 10504s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 10504s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 10504s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 10504s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 10504s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 10504s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 10504s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 10504s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 10504s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 10504s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 10504s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 10504s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 10504s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 10504s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 10504s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 10504s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 10504s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 10504s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 10504s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 10504s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 10504s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 10504s dpkg-preconfigure: unable to re-open stdin: No such file or directory 10504s Fetched 5981 kB in 1s (11.2 MB/s) 10505s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 10505s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 10505s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 10505s Setting up findutils (4.10.0-3build2) ... 10505s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 10505s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 10505s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 10505s Setting up tar (1.35+dfsg-3.1build2) ... 10505s (Reading database ... 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.../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ... 10505s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 10505s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ... 10505s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 10505s Preparing to unpack .../05-less_668-1build1_amd64.deb ... 10505s Unpacking less (668-1build1) over (668-1) ... 10505s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ... 10505s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ... 10506s Preparing to unpack .../07-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 10506s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 10506s Preparing to unpack .../08-python3-markdown-it_3.0.0-3build1_all.deb ... 10506s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ... 10506s Preparing to unpack .../09-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ... 10506s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 10506s Preparing to unpack .../10-libdrm-common_2.4.131-1_all.deb ... 10506s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 10506s Preparing to unpack .../11-libdrm2_2.4.131-1_amd64.deb ... 10506s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 10506s Preparing to unpack .../12-libgpm2_1.20.7-12build1_amd64.deb ... 10506s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ... 10506s Preparing to unpack .../13-libmaxminddb0_1.12.2-1build2_amd64.deb ... 10506s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ... 10506s Preparing to unpack .../14-libsensors-config_1%3a3.6.2-2build1_all.deb ... 10506s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ... 10506s Preparing to unpack .../15-libsensors5_1%3a3.6.2-2build1_amd64.deb ... 10506s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ... 10506s Preparing to unpack .../16-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ... 10506s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 10506s Preparing to unpack .../17-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 10506s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 10506s Preparing to unpack .../18-libnpth0t64_1.8-3build1_amd64.deb ... 10506s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ... 10506s Preparing to unpack .../19-patch_2.8-2build1_amd64.deb ... 10506s Unpacking patch (2.8-2build1) over (2.8-2) ... 10506s Preparing to unpack .../20-pollinate_4.33-4ubuntu5_all.deb ... 10506s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 10506s Preparing to unpack .../21-python3-referencing_0.36.2-1ubuntu2_all.deb ... 10506s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 10506s Preparing to unpack .../22-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ... 10506s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ... 10506s Setting up libnpth0t64:amd64 (1.8-3build1) ... 10506s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 10506s Setting up libgpm2:amd64 (1.20.7-12build1) ... 10506s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 10506s Setting up libsensors-config (1:3.6.2-2build1) ... 10506s Setting up less (668-1build1) ... 10506s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 10506s amd64-microcode: microcode will be updated at next boot 10506s Setting up pollinate (4.33-4ubuntu5) ... 10517s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 10517s Setting up patch (2.8-2build1) ... 10517s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 10517s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 10517s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 10517s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 10517s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 10517s Setting up mawk (1.3.4.20260129-1) ... 10517s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 10517s Setting up libdrm-common (2.4.131-1) ... 10517s Setting up python3-referencing (0.36.2-1ubuntu2) ... 10517s Setting up apt (3.1.15) ... 10518s Setting up python3-markdown-it (3.0.0-3build1) ... 10518s Setting up libdrm2:amd64 (2.4.131-1) ... 10518s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 10518s Processing triggers for libc-bin (2.42-2ubuntu4) ... 10518s Processing triggers for man-db (2.13.1-1) ... 10519s Processing triggers for install-info (7.2-5) ... 10519s Processing triggers for initramfs-tools (0.150ubuntu7) ... 10519s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 10525s autopkgtest [03:07:04]: upgrading testbed (apt dist-upgrade and autopurge) 10526s Reading package lists... 10526s Building dependency tree... 10526s Reading state information... 10527s Calculating upgrade... 10527s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 10527s Reading package lists... 10527s Building dependency tree... 10527s Reading state information... 10527s Solving dependencies... 10527s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 10527s autopkgtest [03:07:06]: rebooting testbed after setup commands that affected boot 10558s Reading package lists... 10558s Building dependency tree... 10558s Reading state information... 10558s Solving dependencies... 10559s The following NEW packages will be installed: 10559s adwaita-icon-theme at-spi2-common bitshuffle dconf-gsettings-backend 10559s dconf-service fontconfig fontconfig-config fonts-dejavu-core 10559s fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx 10559s gtk-update-icon-cache hicolor-icon-theme icu-devtools libamd-comgr3 10559s libamdhip64-6 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libasan8 10559s libasound2-data libasound2t64 libasyncns0 libatk-bridge2.0-0t64 10559s libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data 10559s libavahi-common3 libblas3 libboost-container1.88-dev 10559s libboost-container1.88.0 libboost-graph1.88-dev libboost-graph1.88.0 10559s libboost-numpy1.88.0 libboost-python-dev libboost-python1.88-dev 10559s libboost-python1.88.0 libboost-regex1.88-dev libboost-regex1.88.0 10559s libboost-serialization1.88-dev libboost-serialization1.88.0 10559s libboost-test1.88-dev libboost-test1.88.0 libboost-thread1.88.0 10559s libboost-timer1.88.0 libboost1.88-dev libc-dev-bin libc6-dev 10559s libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 10559s libccp4f0t64 libcctbx-dev libcctbx0 libcolord2 libcrypt-dev libcups2t64 10559s libdatrie1 libdconf1 libdecor-0-0 libdeflate0 libdouble-conversion3 10559s libdrm-intel1 libegl-mesa0 libegl1 libepoxy0 libevent-pthreads-2.1-7t64 10559s libexpat1-dev libfabric1 libflac14 libfontconfig1 libgbm1 libgcc-15-dev 10559s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 10559s libgl1-mesa-dri libgles2 libglew2.2 libglu1-mesa libglut3.12 libglvnd0 10559s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0t64 libgtk-3-common 10559s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhdf5-openmpi-310 10559s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins libhwloc15 10559s libibmad5 libibumad3 libice6 libicu-dev libimagequant0 libinput-bin 10559s libinput10 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery liblapack3 10559s liblcms2-2 liblerc4 liblsan0 liblzf1 libmd4c0 libmmdb2-0 libmp3lame0 10559s libmpg123-0t64 libmtdev1t64 libnetcdf22 libnotify4 libogg0 libopengl0 10559s libopenjp2-7 libopenmpi40 libopus0 libpango-1.0-0 libpangocairo-1.0-0 10559s libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 10559s libpsm2-2 libpulse0 libpython3-dev libpython3.13-dev libpython3.14-minimal 10559s libpython3.14-stdlib libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 10559s libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 10559s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 10559s libqt5xml5t64 libquadmath0 libraqm0 librdmacm1t64 libsamplerate0 10559s libsdl2-2.0-0 libsdl2-classic libsharpyuv0 libsm6 libsndfile1 libssm2 10559s libstdc++-15-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 10559s libtsan2 libubsan1 libucx0 libvorbis0a libvorbisenc2 libvulkan1 10559s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 10559s libwayland-egl1 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 10559s libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 10559s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 10559s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 10559s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 10559s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 10559s libxinerama1 libxkbcommon-x11-0 libxnvctrl0 libxrandr2 libxrender1 10559s libxshmfence1 libxslt1.1 libxss1 libxtst6 libxxf86vm1 libze1 libzopfli1 10559s linux-libc-dev mesa-libgallium ocl-icd-libopencl1 pymol-data 10559s python-matplotlib-data python3-all python3-brotli python3-cctbx 10559s python3-contourpy python3-cycler python3-decorator python3-dev 10559s python3-dials-data python3-flexcache python3-flexparser python3-fonttools 10559s python3-h5py python3-h5py-serial python3-hdf5plugin python3-iniconfig 10559s python3-kiwisolver python3-legacy-cgi python3-lxml python3-lz4 10559s python3-matplotlib python3-mpmath python3-mrcfile python3-natsort 10559s python3-numpy python3-numpy-dev python3-nxmx python3-opengl 10559s python3-ordered-set python3-pil python3-pil.imagetk python3-pint 10559s python3-platformdirs python3-pluggy python3-procrunner python3-pycbf 10559s python3-pymol python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip 10559s python3-pytest python3-pytest-datadir python3-pytest-mock 10559s python3-pytest-regressions python3-scipy python3-sympy python3-tk 10559s python3-tqdm python3-ufolib2 python3-wxgtk4.0 python3-zopfli python3.13-dev 10559s python3.13-tk python3.14 python3.14-minimal python3.14-tk rpcsvc-proto 10559s sphinx-rtd-theme-common unicode-data x11-common zlib1g-dev 10559s 0 upgraded, 293 newly installed, 0 to remove and 0 not upgraded. 10559s Need to get 295 MB of archives. 10559s After this operation, 1499 MB of additional disk space will be used. 10559s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-lato all 2.015-1build1 [2779 kB] 10559s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 10559s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 10559s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 10559s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 10559s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 10559s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 10559s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 10559s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [8584 B] 10559s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 10559s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 10559s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 10559s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 10559s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 10559s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 10559s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 10559s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 10559s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.4+dfsg-1 [153 kB] 10559s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 gtk-update-icon-cache amd64 4.20.3+ds-3 [54.9 kB] 10559s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 hicolor-icon-theme all 0.18-2build1 [13.2 kB] 10559s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 adwaita-icon-theme all 49.0-1 [581 kB] 10559s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 at-spi2-common all 2.59.0-1 [9774 B] 10559s Get:23 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 10559s Get:24 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 10560s Get:25 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 10560s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4build1 [7490 B] 10560s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.15.1-4 [1586 kB] 10560s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.15.1-4 [11.3 kB] 10560s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 10560s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10build1 [8360 B] 10560s Get:31 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 10560s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 librdmacm1t64 amd64 61.0-2ubuntu1 [73.7 kB] 10560s Get:33 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfabric1 amd64 2.1.0-1.1build1 [705 kB] 10560s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc15 amd64 2.12.2-1build1 [175 kB] 10560s Get:35 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd-comgr3 amd64 7.1.0+dfsg-0ubuntu4 [15.2 MB] 10560s Get:36 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhsakmt1 amd64 6.4.3+dfsg-3 [67.5 kB] 10560s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhsa-runtime64-1 amd64 6.4.3+dfsg-3 [630 kB] 10560s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamdhip64-6 amd64 6.4.3-4 [10.3 MB] 10560s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libibumad3 amd64 61.0-2ubuntu1 [31.5 kB] 10560s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libibmad5 amd64 61.0-2ubuntu1 [44.2 kB] 10560s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 libucx0 amd64 1.20.0+ds-4ubuntu1 [951 kB] 10560s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libpciaccess0 amd64 0.18.1-1ubuntu3 [19.0 kB] 10560s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu7 [13.2 kB] 10560s Get:44 http://ftpmaster.internal/ubuntu resolute/universe amd64 libze1 amd64 1.27.0-1 [630 kB] 10560s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 ocl-icd-libopencl1 amd64 2.3.4-1 [40.9 kB] 10560s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhwloc-plugins amd64 2.12.2-1build1 [21.4 kB] 10560s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 libopenmpi40 amd64 5.0.8-8ubuntu1 [3384 kB] 10560s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-openmpi-310 amd64 1.14.6+repack-2 [1492 kB] 10560s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 bitshuffle amd64 0.5.2-1build3 [219 kB] 10560s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libdconf1 amd64 0.49.0-4 [40.5 kB] 10560s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-service amd64 0.49.0-4 [27.7 kB] 10560s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-gsettings-backend amd64 0.49.0-4 [22.2 kB] 10560s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 10560s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 10560s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 10560s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 10560s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 10560s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 10560s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 10560s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 10560s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 libann-cctbx0 amd64 1.1.2+doc-9build2 [33.1 kB] 10560s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libann-cctbx-dev amd64 1.1.2+doc-9build2 [46.0 kB] 10560s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4build3 [46.3 kB] 10560s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB] 10560s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libasound2-data all 1.2.15.3-1ubuntu1 [21.4 kB] 10560s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libasound2t64 amd64 1.2.15.3-1ubuntu1 [418 kB] 10560s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libasyncns0 amd64 0.8-7 [12.4 kB] 10560s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk1.0-0t64 amd64 2.59.0-1 [57.1 kB] 10560s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB] 10560s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libatspi2.0-0t64 amd64 2.59.0-1 [85.7 kB] 10560s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk-bridge2.0-0t64 amd64 2.59.0-1 [67.6 kB] 10560s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common-data amd64 0.8-17ubuntu2 [31.5 kB] 10560s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common3 amd64 0.8-17ubuntu2 [23.7 kB] 10560s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-client3 amd64 0.8-17ubuntu2 [27.3 kB] 10560s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB] 10560s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB] 10560s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB] 10561s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB] 10561s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB] 10561s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB] 10561s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 10561s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 10561s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.18.0-9.9 [1860 kB] 10561s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 10561s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 10561s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 10561s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 10561s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.88-dev amd64 1.88.0-1.4ubuntu3 [11.3 MB] 10561s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-container1.88.0 amd64 1.88.0-1.4ubuntu3 [265 kB] 10561s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-container1.88-dev amd64 1.88.0-1.4ubuntu3 [269 kB] 10561s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-graph1.88.0 amd64 1.88.0-1.4ubuntu3 [369 kB] 10561s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-regex1.88.0 amd64 1.88.0-1.4ubuntu3 [347 kB] 10561s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 10561s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-regex1.88-dev amd64 1.88.0-1.4ubuntu3 [360 kB] 10561s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-serialization1.88.0 amd64 1.88.0-1.4ubuntu3 [347 kB] 10561s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-serialization1.88-dev amd64 1.88.0-1.4ubuntu3 [388 kB] 10561s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-test1.88.0 amd64 1.88.0-1.4ubuntu3 [462 kB] 10561s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-test1.88-dev amd64 1.88.0-1.4ubuntu3 [570 kB] 10561s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-graph1.88-dev amd64 1.88.0-1.4ubuntu3 [400 kB] 10561s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-python1.88.0 amd64 1.88.0-1.4ubuntu3 [360 kB] 10561s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-numpy1.88.0 amd64 1.88.0-1.4ubuntu3 [248 kB] 10561s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libexpat1-dev amd64 2.7.4-1 [145 kB] 10561s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 10561s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13-dev amd64 3.13.11-1 [5798 kB] 10561s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3-dev amd64 3.13.9-3 [11.2 kB] 10561s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-dev amd64 3.13.11-1 [508 kB] 10561s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dev amd64 3.13.9-3 [26.6 kB] 10561s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-python1.88-dev amd64 1.88.0-1.4ubuntu3 [382 kB] 10561s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-python-dev amd64 1.88.0.0ubuntu3 [4672 B] 10561s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-thread1.88.0 amd64 1.88.0-1.4ubuntu3 [273 kB] 10561s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-timer1.88.0 amd64 1.88.0-1.4ubuntu3 [243 kB] 10561s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 10561s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 10561s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 10561s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 10561s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 10561s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo-gobject2 amd64 1.18.4-3 [127 kB] 10561s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcbf1t64 amd64 0.9.7+dfsg1-5.1 [362 kB] 10561s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4-data all 8.0.0-5build1 [65.4 kB] 10561s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4c0t64 amd64 8.0.0-5build1 [95.9 kB] 10561s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmmdb2-0 amd64 2.0.22-1build1 [369 kB] 10561s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4f0t64 amd64 8.0.0-5build1 [221 kB] 10561s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4-dev amd64 8.0.0-5build1 [42.4 kB] 10561s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcctbx0 amd64 2025.12+ds2+~3.26.0+ds1-3 [2009 kB] 10562s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcctbx-dev amd64 2025.12+ds2+~3.26.0+ds1-3 [1197 kB] 10562s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 10562s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolord2 amd64 1.4.8-2build1 [149 kB] 10562s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libcups2t64 amd64 2.4.16-1ubuntu1 [273 kB] 10562s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 10562s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-client0 amd64 1.24.0-2 [28.5 kB] 10562s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libdecor-0-0 amd64 0.2.5-1 [16.5 kB] 10562s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdouble-conversion3 amd64 3.4.0-1 [41.4 kB] 10562s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-intel1 amd64 2.4.131-1 [66.7 kB] 10562s Get:134 http://ftpmaster.internal/ubuntu resolute/main amd64 libx11-xcb1 amd64 2:1.8.12-1build1 [8044 B] 10562s Get:135 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-dri3-0 amd64 1.17.0-2ubuntu1 [7540 B] 10562s Get:136 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-present0 amd64 1.17.0-2ubuntu1 [6112 B] 10562s Get:137 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-randr0 amd64 1.17.0-2ubuntu1 [17.9 kB] 10562s Get:138 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-sync1 amd64 1.17.0-2ubuntu1 [9348 B] 10562s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xfixes0 amd64 1.17.0-2ubuntu1 [10.2 kB] 10562s Get:140 http://ftpmaster.internal/ubuntu resolute/main amd64 libxshmfence1 amd64 1.3.3-1build1 [5284 B] 10562s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 mesa-libgallium amd64 25.3.3-1ubuntu1 [11.1 MB] 10562s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 libgbm1 amd64 25.3.3-1ubuntu1 [34.0 kB] 10562s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libegl-mesa0 amd64 25.3.3-1ubuntu1 [117 kB] 10562s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 libepoxy0 amd64 1.5.10-2build1 [226 kB] 10562s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 libogg0 amd64 1.3.6-2 [23.4 kB] 10562s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libflac14 amd64 1.5.0+ds-5 [168 kB] 10562s Get:147 http://ftpmaster.internal/ubuntu resolute/main amd64 libvulkan1 amd64 1.4.335.0-1 [158 kB] 10562s Get:148 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1-mesa-dri amd64 25.3.3-1ubuntu1 [37.5 kB] 10562s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 libglvnd0 amd64 1.7.0-3 [64.1 kB] 10562s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-glx0 amd64 1.17.0-2ubuntu1 [24.7 kB] 10562s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 libxxf86vm1 amd64 1:1.1.4-2 [10.6 kB] 10562s Get:152 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx-mesa0 amd64 25.3.3-1ubuntu1 [110 kB] 10562s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx0 amd64 1.7.0-3 [38.9 kB] 10562s Get:154 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1 amd64 1.7.0-3 [98.3 kB] 10562s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglew2.2 amd64 2.2.0-4build2 [181 kB] 10562s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglut3.12 amd64 3.4.0-6 [101 kB] 10562s Get:157 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 10562s Get:158 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 10562s Get:159 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 10562s Get:160 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 10562s Get:161 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 10562s Get:162 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 10562s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 10562s Get:164 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-cursor0 amd64 1.24.0-2 [10.8 kB] 10562s Get:165 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-egl1 amd64 1.24.0-2 [6248 B] 10562s Get:166 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcomposite1 amd64 1:0.4.6-1build1 [6664 B] 10562s Get:167 http://ftpmaster.internal/ubuntu resolute/main amd64 libxfixes3 amd64 1:6.0.0-2build2 [11.1 kB] 10562s Get:168 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcursor1 amd64 1:1.2.3-1build1 [22.1 kB] 10562s Get:169 http://ftpmaster.internal/ubuntu resolute/main amd64 libxdamage1 amd64 1:1.1.7-1 [6582 B] 10562s Get:170 http://ftpmaster.internal/ubuntu resolute/main amd64 libxinerama1 amd64 2:1.1.4-3build2 [6472 B] 10562s Get:171 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrandr2 amd64 2:1.5.4-1build1 [19.6 kB] 10562s Get:172 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB] 10562s Get:173 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-0t64 amd64 3.24.50-1ubuntu2 [3263 kB] 10562s Get:174 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 10562s Get:175 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 10562s Get:176 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 10562s Get:177 http://ftpmaster.internal/ubuntu resolute/main amd64 libwacom-common all 2.16.1-1 [113 kB] 10562s Get:178 http://ftpmaster.internal/ubuntu resolute/main amd64 libwacom9 amd64 2.16.1-1 [28.3 kB] 10562s Get:179 http://ftpmaster.internal/ubuntu resolute/main amd64 libinput-bin amd64 1.30.1-1 [24.7 kB] 10562s Get:180 http://ftpmaster.internal/ubuntu resolute/main amd64 libmtdev1t64 amd64 1.1.7-1build1 [15.2 kB] 10562s Get:181 http://ftpmaster.internal/ubuntu resolute/main amd64 libinput10 amd64 1.30.1-1 [160 kB] 10562s Get:182 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 10562s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmd4c0 amd64 0.5.2-2build1 [43.7 kB] 10562s Get:184 http://ftpmaster.internal/ubuntu resolute/main amd64 libmp3lame0 amd64 3.100-6build2 [146 kB] 10562s Get:185 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpg123-0t64 amd64 1.33.3-2 [176 kB] 10562s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 10562s Get:187 http://ftpmaster.internal/ubuntu resolute/main amd64 libnotify4 amd64 0.8.8-1 [28.6 kB] 10562s Get:188 http://ftpmaster.internal/ubuntu resolute/main amd64 libopus0 amd64 1.6.1-1 [3564 kB] 10562s Get:189 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 10562s Get:190 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 10562s Get:191 http://ftpmaster.internal/ubuntu resolute/main amd64 libvorbis0a amd64 1.3.7-3build1 [103 kB] 10562s Get:192 http://ftpmaster.internal/ubuntu resolute/main amd64 libvorbisenc2 amd64 1.3.7-3build1 [79.8 kB] 10562s Get:193 http://ftpmaster.internal/ubuntu resolute/main amd64 libsndfile1 amd64 1.2.2-4 [219 kB] 10562s Get:194 http://ftpmaster.internal/ubuntu resolute/main amd64 libpulse0 amd64 1:17.0+dfsg1-2ubuntu4 [293 kB] 10562s Get:195 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 10562s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 10562s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5core5t64 amd64 5.15.18+dfsg-1ubuntu1 [2066 kB] 10562s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5dbus5t64 amd64 5.15.18+dfsg-1ubuntu1 [222 kB] 10562s Get:199 http://ftpmaster.internal/ubuntu resolute/main amd64 libegl1 amd64 1.7.0-3 [29.7 kB] 10562s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5network5t64 amd64 5.15.18+dfsg-1ubuntu1 [731 kB] 10562s Get:201 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 10562s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-icccm4 amd64 0.4.2-1build1 [11.0 kB] 10562s Get:203 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-util1 amd64 0.4.1-1build1 [11.1 kB] 10562s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-image0 amd64 0.4.0-2build2 [11.0 kB] 10562s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-keysyms1 amd64 0.4.1-1build1 [8704 B] 10562s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-render-util0 amd64 0.3.10-1build1 [10.4 kB] 10562s Get:207 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shape0 amd64 1.17.0-2ubuntu1 [6172 B] 10562s Get:208 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xinerama0 amd64 1.17.0-2ubuntu1 [5542 B] 10562s Get:209 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xinput0 amd64 1.17.0-2ubuntu1 [32.5 kB] 10562s Get:210 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xkb1 amd64 1.17.0-2ubuntu1 [32.7 kB] 10562s Get:211 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon-x11-0 amd64 1.12.3-1 [15.0 kB] 10562s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5gui5t64 amd64 5.15.18+dfsg-1ubuntu1 [3819 kB] 10562s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5widgets5t64 amd64 5.15.18+dfsg-1ubuntu1 [2584 kB] 10562s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5xml5t64 amd64 5.15.18+dfsg-1ubuntu1 [124 kB] 10562s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5designer5 amd64 5.15.18-1 [2837 kB] 10563s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5sql5t64 amd64 5.15.18+dfsg-1ubuntu1 [123 kB] 10563s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5help5 amd64 5.15.18-1 [163 kB] 10563s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5opengl5t64 amd64 5.15.18+dfsg-1ubuntu1 [150 kB] 10563s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5printsupport5t64 amd64 5.15.18+dfsg-1ubuntu1 [209 kB] 10563s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5test5t64 amd64 5.15.18+dfsg-1ubuntu1 [149 kB] 10563s Get:221 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1build1 [15.5 kB] 10563s Get:222 http://ftpmaster.internal/ubuntu resolute/main amd64 libsamplerate0 amd64 0.2.2-4build2 [1343 kB] 10563s Get:223 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 10563s Get:224 http://ftpmaster.internal/ubuntu resolute/main amd64 libsdl2-classic amd64 2.32.10+dfsg-6 [710 kB] 10563s Get:225 http://ftpmaster.internal/ubuntu resolute/main amd64 libsdl2-2.0-0 amd64 2.32.10+dfsg-6 [14.0 kB] 10563s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 libssm2 amd64 1.4.0-2build2 [88.7 kB] 10563s Get:227 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 10563s Get:228 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 10563s Get:229 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 10563s Get:230 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1build1 [12.8 kB] 10563s Get:231 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1build1 [26.4 kB] 10563s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxbase3.2-1t64 amd64 3.2.9+dfsg-1 [931 kB] 10563s Get:233 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtst6 amd64 2:1.2.5-1build1 [13.1 kB] 10563s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxgtk3.2-1t64 amd64 3.2.9+dfsg-1 [4703 kB] 10563s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxgtk-gl3.2-1t64 amd64 3.2.9+dfsg-1 [53.1 kB] 10563s Get:236 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 10563s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3build1 [114 kB] 10563s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 pymol-data all 3.1.0+dfsg-1build2 [1392 kB] 10563s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 10563s Get:240 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 10563s Get:241 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.9-3 [890 B] 10563s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 10563s Get:243 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-legacy-cgi all 2.6.4-2 [17.2 kB] 10563s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pycbf amd64 0.9.7+dfsg1-5.1 [181 kB] 10563s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-hdf5plugin all 5.1.0-1 [23.3 kB] 10563s Get:246 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 10563s Get:247 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 10563s Get:248 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.11-1 [108 kB] 10563s Get:249 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.2-1 [109 kB] 10563s Get:250 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-3 [11.2 kB] 10563s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B] 10563s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.3-1 [255 kB] 10563s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 10563s Get:254 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 10563s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.5+dfsg-1 [27.7 kB] 10563s Get:256 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 10563s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.16.3-4 [19.0 MB] 10563s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 10564s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 10564s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 10564s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 10564s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1build1 [9543 kB] 10564s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.61.1-3 [1742 kB] 10564s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 10564s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 10564s Get:266 http://ftpmaster.internal/ubuntu resolute/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1013 kB] 10564s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mrcfile all 1.5.4-2 [116 kB] 10564s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-natsort all 8.4.0-2 [34.2 kB] 10564s Get:269 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-flexcache all 0.3-3 [13.6 kB] 10564s Get:270 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-flexparser all 0.4-2 [44.0 kB] 10564s Get:271 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.5.1-1 [17.1 kB] 10564s Get:272 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pint all 0.25.2-2 [208 kB] 10564s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nxmx all 0.0.4-1build1 [16.6 kB] 10564s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ordered-set all 4.1.0-1build1 [9668 B] 10564s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-procrunner all 2.3.3-2 [12.0 kB] 10564s Get:276 http://ftpmaster.internal/ubuntu resolute/main amd64 libgles2 amd64 1.7.0-3 [17.5 kB] 10564s Get:277 http://ftpmaster.internal/ubuntu resolute/main amd64 libopengl0 amd64 1.7.0-3 [32.8 kB] 10564s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglu1-mesa amd64 9.0.2-1.1build2 [159 kB] 10564s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-opengl all 3.1.10+dfsg-1 [633 kB] 10564s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5.sip amd64 12.17.2-1 [81.1 kB] 10565s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-3build2 [2737 kB] 10565s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-3build2 [127 kB] 10565s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pymol amd64 3.1.0+dfsg-1build2 [7762 kB] 10565s Get:284 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-tqdm all 4.67.3-1 [93.3 kB] 10565s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-wxgtk4.0 amd64 4.2.4+dfsg-1 [11.1 MB] 10565s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cctbx amd64 2025.12+ds2+~3.26.0+ds1-3 [33.5 MB] 10566s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-2 [6962 B] 10566s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-2 [21.1 kB] 10566s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 9.0.2-2 [277 kB] 10566s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-dials-data all 2.4.0-3 [109 kB] 10566s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-datadir all 1.4.1+ds-2 [5806 B] 10566s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-mock all 3.15.1-1 [11.9 kB] 10566s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-regressions all 2.5.0+ds-3 [35.4 kB] 10566s Fetched 295 MB in 7s (41.4 MB/s) 10566s Selecting previously unselected package fonts-lato. 10566s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 10566s Preparing to unpack .../000-fonts-lato_2.015-1build1_all.deb ... 10566s Unpacking fonts-lato (2.015-1build1) ... 10567s Selecting previously unselected package python3-numpy-dev:amd64. 10567s Preparing to unpack .../001-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 10567s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 10567s Selecting previously unselected package libblas3:amd64. 10567s Preparing to unpack .../002-libblas3_3.12.1-7ubuntu1_amd64.deb ... 10567s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 10567s Selecting previously unselected package libgfortran5:amd64. 10567s Preparing to unpack .../003-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 10567s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 10567s Selecting previously unselected package liblapack3:amd64. 10567s Preparing to unpack .../004-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 10567s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 10567s Selecting previously unselected package python3-numpy. 10567s Preparing to unpack .../005-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 10567s Unpacking python3-numpy (1:2.3.5+ds-3) ... 10567s Selecting previously unselected package libpython3.14-minimal:amd64. 10567s Preparing to unpack .../006-libpython3.14-minimal_3.14.2-1_amd64.deb ... 10567s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 10567s Selecting previously unselected package python3.14-minimal. 10567s Preparing to unpack .../007-python3.14-minimal_3.14.2-1_amd64.deb ... 10567s Unpacking python3.14-minimal (3.14.2-1) ... 10567s Selecting previously unselected package libgdk-pixbuf2.0-common. 10567s Preparing to unpack .../008-libgdk-pixbuf2.0-common_2.44.4+dfsg-1_all.deb ... 10567s Unpacking libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ... 10567s Selecting previously unselected package libjpeg-turbo8:amd64. 10567s Preparing to unpack .../009-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 10567s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 10567s Selecting previously unselected package libjpeg8:amd64. 10567s Preparing to unpack .../010-libjpeg8_8c-2ubuntu11_amd64.deb ... 10567s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 10567s Selecting previously unselected package libdeflate0:amd64. 10567s Preparing to unpack .../011-libdeflate0_1.23-2_amd64.deb ... 10567s Unpacking libdeflate0:amd64 (1.23-2) ... 10567s Selecting previously unselected package libjbig0:amd64. 10567s Preparing to unpack .../012-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 10567s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 10567s Selecting previously unselected package liblerc4:amd64. 10567s Preparing to unpack .../013-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 10567s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 10567s Selecting previously unselected package libsharpyuv0:amd64. 10567s Preparing to unpack .../014-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 10567s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 10567s Selecting previously unselected package libwebp7:amd64. 10567s Preparing to unpack .../015-libwebp7_1.5.0-0.1build1_amd64.deb ... 10567s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 10567s Selecting previously unselected package libtiff6:amd64. 10567s Preparing to unpack .../016-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 10567s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 10567s Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. 10567s Preparing to unpack .../017-libgdk-pixbuf-2.0-0_2.44.4+dfsg-1_amd64.deb ... 10567s Unpacking libgdk-pixbuf-2.0-0:amd64 (2.44.4+dfsg-1) ... 10567s Selecting previously unselected package gtk-update-icon-cache. 10567s Preparing to unpack .../018-gtk-update-icon-cache_4.20.3+ds-3_amd64.deb ... 10567s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 10567s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 10567s Unpacking gtk-update-icon-cache (4.20.3+ds-3) ... 10567s Selecting previously unselected package hicolor-icon-theme. 10567s Preparing to unpack .../019-hicolor-icon-theme_0.18-2build1_all.deb ... 10567s Unpacking hicolor-icon-theme (0.18-2build1) ... 10567s Selecting previously unselected package adwaita-icon-theme. 10567s Preparing to unpack .../020-adwaita-icon-theme_49.0-1_all.deb ... 10567s Unpacking adwaita-icon-theme (49.0-1) ... 10567s Selecting previously unselected package at-spi2-common. 10567s Preparing to unpack .../021-at-spi2-common_2.59.0-1_all.deb ... 10567s Unpacking at-spi2-common (2.59.0-1) ... 10567s Selecting previously unselected package libsz2:amd64. 10567s Preparing to unpack .../022-libsz2_1.1.5-1_amd64.deb ... 10567s Unpacking libsz2:amd64 (1.1.5-1) ... 10567s Selecting previously unselected package libhdf5-310:amd64. 10567s Preparing to unpack .../023-libhdf5-310_1.14.6+repack-2_amd64.deb ... 10567s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 10567s Selecting previously unselected package libhdf5-hl-310:amd64. 10567s Preparing to unpack .../024-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ... 10567s Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 10567s Selecting previously unselected package liblzf1:amd64. 10567s Preparing to unpack .../025-liblzf1_3.6-4build1_amd64.deb ... 10567s Unpacking liblzf1:amd64 (3.6-4build1) ... 10567s Selecting previously unselected package python3-h5py-serial. 10567s Preparing to unpack .../026-python3-h5py-serial_3.15.1-4_amd64.deb ... 10567s Unpacking python3-h5py-serial (3.15.1-4) ... 10567s Selecting previously unselected package python3-h5py. 10567s Preparing to unpack .../027-python3-h5py_3.15.1-4_all.deb ... 10567s Unpacking python3-h5py (3.15.1-4) ... 10567s Selecting previously unselected package libgomp1:amd64. 10567s Preparing to unpack .../028-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 10567s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 10567s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 10567s Preparing to unpack .../029-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_amd64.deb ... 10567s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10build1) ... 10567s Selecting previously unselected package libpsm2-2. 10567s Preparing to unpack .../030-libpsm2-2_11.2.185-2.1_amd64.deb ... 10567s Unpacking libpsm2-2 (11.2.185-2.1) ... 10567s Selecting previously unselected package librdmacm1t64:amd64. 10567s Preparing to unpack .../031-librdmacm1t64_61.0-2ubuntu1_amd64.deb ... 10567s Unpacking librdmacm1t64:amd64 (61.0-2ubuntu1) ... 10567s Selecting previously unselected package libfabric1:amd64. 10567s Preparing to unpack .../032-libfabric1_2.1.0-1.1build1_amd64.deb ... 10567s Unpacking libfabric1:amd64 (2.1.0-1.1build1) ... 10567s Selecting previously unselected package libhwloc15:amd64. 10567s Preparing to unpack .../033-libhwloc15_2.12.2-1build1_amd64.deb ... 10567s Unpacking libhwloc15:amd64 (2.12.2-1build1) ... 10567s Selecting previously unselected package libamd-comgr3:amd64. 10567s Preparing to unpack .../034-libamd-comgr3_7.1.0+dfsg-0ubuntu4_amd64.deb ... 10567s Unpacking libamd-comgr3:amd64 (7.1.0+dfsg-0ubuntu4) ... 10567s Selecting previously unselected package libhsakmt1:amd64. 10567s Preparing to unpack .../035-libhsakmt1_6.4.3+dfsg-3_amd64.deb ... 10567s Unpacking libhsakmt1:amd64 (6.4.3+dfsg-3) ... 10567s Selecting previously unselected package libhsa-runtime64-1:amd64. 10567s Preparing to unpack .../036-libhsa-runtime64-1_6.4.3+dfsg-3_amd64.deb ... 10567s Unpacking libhsa-runtime64-1:amd64 (6.4.3+dfsg-3) ... 10567s Selecting previously unselected package libamdhip64-6:amd64. 10567s Preparing to unpack .../037-libamdhip64-6_6.4.3-4_amd64.deb ... 10567s Unpacking libamdhip64-6:amd64 (6.4.3-4) ... 10568s Selecting previously unselected package libibumad3:amd64. 10568s Preparing to unpack .../038-libibumad3_61.0-2ubuntu1_amd64.deb ... 10568s Unpacking libibumad3:amd64 (61.0-2ubuntu1) ... 10568s Selecting previously unselected package libibmad5:amd64. 10568s Preparing to unpack .../039-libibmad5_61.0-2ubuntu1_amd64.deb ... 10568s Unpacking libibmad5:amd64 (61.0-2ubuntu1) ... 10568s Selecting previously unselected package libucx0:amd64. 10568s Preparing to unpack .../040-libucx0_1.20.0+ds-4ubuntu1_amd64.deb ... 10568s Unpacking libucx0:amd64 (1.20.0+ds-4ubuntu1) ... 10568s Selecting previously unselected package libpciaccess0:amd64. 10568s Preparing to unpack .../041-libpciaccess0_0.18.1-1ubuntu3_amd64.deb ... 10568s Unpacking libpciaccess0:amd64 (0.18.1-1ubuntu3) ... 10568s Selecting previously unselected package libxnvctrl0:amd64. 10568s Preparing to unpack .../042-libxnvctrl0_510.47.03-0ubuntu7_amd64.deb ... 10568s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu7) ... 10568s Selecting previously unselected package libze1:amd64. 10568s Preparing to unpack .../043-libze1_1.27.0-1_amd64.deb ... 10568s Unpacking libze1:amd64 (1.27.0-1) ... 10568s Selecting previously unselected package ocl-icd-libopencl1:amd64. 10568s Preparing to unpack .../044-ocl-icd-libopencl1_2.3.4-1_amd64.deb ... 10568s Unpacking ocl-icd-libopencl1:amd64 (2.3.4-1) ... 10568s Selecting previously unselected package libhwloc-plugins:amd64. 10568s Preparing to unpack .../045-libhwloc-plugins_2.12.2-1build1_amd64.deb ... 10568s Unpacking libhwloc-plugins:amd64 (2.12.2-1build1) ... 10568s Selecting previously unselected package libopenmpi40:amd64. 10568s Preparing to unpack .../046-libopenmpi40_5.0.8-8ubuntu1_amd64.deb ... 10568s Unpacking libopenmpi40:amd64 (5.0.8-8ubuntu1) ... 10568s Selecting previously unselected package libhdf5-openmpi-310:amd64. 10568s Preparing to unpack .../047-libhdf5-openmpi-310_1.14.6+repack-2_amd64.deb ... 10568s Unpacking libhdf5-openmpi-310:amd64 (1.14.6+repack-2) ... 10568s Selecting previously unselected package bitshuffle. 10568s Preparing to unpack .../048-bitshuffle_0.5.2-1build3_amd64.deb ... 10568s Unpacking bitshuffle (0.5.2-1build3) ... 10568s Selecting previously unselected package libdconf1:amd64. 10568s Preparing to unpack .../049-libdconf1_0.49.0-4_amd64.deb ... 10568s Unpacking libdconf1:amd64 (0.49.0-4) ... 10568s Selecting previously unselected package dconf-service. 10568s Preparing to unpack .../050-dconf-service_0.49.0-4_amd64.deb ... 10568s Unpacking dconf-service (0.49.0-4) ... 10568s Selecting previously unselected package dconf-gsettings-backend:amd64. 10568s Preparing to unpack .../051-dconf-gsettings-backend_0.49.0-4_amd64.deb ... 10568s Unpacking dconf-gsettings-backend:amd64 (0.49.0-4) ... 10568s Selecting previously unselected package fonts-dejavu-mono. 10568s Preparing to unpack .../052-fonts-dejavu-mono_2.37-8build1_all.deb ... 10568s Unpacking fonts-dejavu-mono (2.37-8build1) ... 10568s Selecting previously unselected package fonts-dejavu-core. 10568s Preparing to unpack .../053-fonts-dejavu-core_2.37-8build1_all.deb ... 10568s Unpacking fonts-dejavu-core (2.37-8build1) ... 10568s Selecting previously unselected package fontconfig-config. 10568s Preparing to unpack .../054-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 10568s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 10568s Selecting previously unselected package libfontconfig1:amd64. 10568s Preparing to unpack .../055-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 10568s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 10568s Selecting previously unselected package fontconfig. 10568s Preparing to unpack .../056-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 10568s Unpacking fontconfig (2.17.1-3ubuntu1) ... 10568s Selecting previously unselected package fonts-font-awesome. 10568s Preparing to unpack .../057-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 10568s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 10568s Selecting previously unselected package fonts-lyx. 10568s Preparing to unpack .../058-fonts-lyx_2.5.0~RC2-3_all.deb ... 10568s Unpacking fonts-lyx (2.5.0~RC2-3) ... 10568s Selecting previously unselected package icu-devtools. 10568s Preparing to unpack .../059-icu-devtools_78.2-1ubuntu1_amd64.deb ... 10568s Unpacking icu-devtools (78.2-1ubuntu1) ... 10568s Selecting previously unselected package libann-cctbx0. 10568s Preparing to unpack .../060-libann-cctbx0_1.1.2+doc-9build2_amd64.deb ... 10568s Unpacking libann-cctbx0 (1.1.2+doc-9build2) ... 10568s Selecting previously unselected package libann-cctbx-dev. 10568s Preparing to unpack .../061-libann-cctbx-dev_1.1.2+doc-9build2_amd64.deb ... 10568s Unpacking libann-cctbx-dev (1.1.2+doc-9build2) ... 10568s Selecting previously unselected package libantlr3c-3.4-0:amd64. 10568s Preparing to unpack .../062-libantlr3c-3.4-0_3.4+dfsg-4build3_amd64.deb ... 10568s Unpacking libantlr3c-3.4-0:amd64 (3.4+dfsg-4build3) ... 10568s Selecting previously unselected package libasan8:amd64. 10568s Preparing to unpack .../063-libasan8_15.2.0-12ubuntu1_amd64.deb ... 10568s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ... 10568s Selecting previously unselected package libasound2-data. 10568s Preparing to unpack .../064-libasound2-data_1.2.15.3-1ubuntu1_all.deb ... 10568s Unpacking libasound2-data (1.2.15.3-1ubuntu1) ... 10568s Selecting previously unselected package libasound2t64:amd64. 10568s Preparing to unpack .../065-libasound2t64_1.2.15.3-1ubuntu1_amd64.deb ... 10568s Unpacking libasound2t64:amd64 (1.2.15.3-1ubuntu1) ... 10568s Selecting previously unselected package libasyncns0:amd64. 10568s Preparing to unpack .../066-libasyncns0_0.8-7_amd64.deb ... 10568s Unpacking libasyncns0:amd64 (0.8-7) ... 10568s Selecting previously unselected package libatk1.0-0t64:amd64. 10568s Preparing to unpack .../067-libatk1.0-0t64_2.59.0-1_amd64.deb ... 10568s Unpacking libatk1.0-0t64:amd64 (2.59.0-1) ... 10568s Selecting previously unselected package libxi6:amd64. 10568s Preparing to unpack .../068-libxi6_2%3a1.8.2-2_amd64.deb ... 10568s Unpacking libxi6:amd64 (2:1.8.2-2) ... 10568s Selecting previously unselected package libatspi2.0-0t64:amd64. 10568s Preparing to unpack .../069-libatspi2.0-0t64_2.59.0-1_amd64.deb ... 10568s Unpacking libatspi2.0-0t64:amd64 (2.59.0-1) ... 10568s Selecting previously unselected package libatk-bridge2.0-0t64:amd64. 10568s Preparing to unpack .../070-libatk-bridge2.0-0t64_2.59.0-1_amd64.deb ... 10568s Unpacking libatk-bridge2.0-0t64:amd64 (2.59.0-1) ... 10568s Selecting previously unselected package libavahi-common-data:amd64. 10568s Preparing to unpack .../071-libavahi-common-data_0.8-17ubuntu2_amd64.deb ... 10568s Unpacking libavahi-common-data:amd64 (0.8-17ubuntu2) ... 10568s Selecting previously unselected package libavahi-common3:amd64. 10568s Preparing to unpack .../072-libavahi-common3_0.8-17ubuntu2_amd64.deb ... 10568s Unpacking libavahi-common3:amd64 (0.8-17ubuntu2) ... 10568s Selecting previously unselected package libavahi-client3:amd64. 10568s Preparing to unpack .../073-libavahi-client3_0.8-17ubuntu2_amd64.deb ... 10568s Unpacking libavahi-client3:amd64 (0.8-17ubuntu2) ... 10568s Selecting previously unselected package libitm1:amd64. 10568s Preparing to unpack .../074-libitm1_15.2.0-12ubuntu1_amd64.deb ... 10568s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ... 10568s Selecting previously unselected package liblsan0:amd64. 10568s Preparing to unpack .../075-liblsan0_15.2.0-12ubuntu1_amd64.deb ... 10568s Unpacking liblsan0:amd64 (15.2.0-12ubuntu1) ... 10568s Selecting previously unselected package libtsan2:amd64. 10568s Preparing to unpack .../076-libtsan2_15.2.0-12ubuntu1_amd64.deb ... 10568s Unpacking libtsan2:amd64 (15.2.0-12ubuntu1) ... 10568s Selecting previously unselected package libubsan1:amd64. 10568s Preparing to unpack .../077-libubsan1_15.2.0-12ubuntu1_amd64.deb ... 10568s Unpacking libubsan1:amd64 (15.2.0-12ubuntu1) ... 10568s Selecting previously unselected package libhwasan0:amd64. 10568s Preparing to unpack .../078-libhwasan0_15.2.0-12ubuntu1_amd64.deb ... 10568s Unpacking libhwasan0:amd64 (15.2.0-12ubuntu1) ... 10568s Selecting previously unselected package libquadmath0:amd64. 10568s Preparing to unpack .../079-libquadmath0_15.2.0-12ubuntu1_amd64.deb ... 10568s Unpacking libquadmath0:amd64 (15.2.0-12ubuntu1) ... 10568s Selecting previously unselected package libgcc-15-dev:amd64. 10568s Preparing to unpack .../080-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 10568s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 10568s Selecting previously unselected package libc-dev-bin. 10568s Preparing to unpack .../081-libc-dev-bin_2.42-2ubuntu4_amd64.deb ... 10568s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 10568s Selecting previously unselected package linux-libc-dev:amd64. 10568s Preparing to unpack .../082-linux-libc-dev_6.18.0-9.9_amd64.deb ... 10568s Unpacking linux-libc-dev:amd64 (6.18.0-9.9) ... 10569s Selecting previously unselected package libcrypt-dev:amd64. 10569s Preparing to unpack .../083-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 10569s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 10569s Selecting previously unselected package rpcsvc-proto. 10569s Preparing to unpack .../084-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 10569s Unpacking rpcsvc-proto (1.4.3-1build1) ... 10569s Selecting previously unselected package libc6-dev:amd64. 10569s Preparing to unpack .../085-libc6-dev_2.42-2ubuntu4_amd64.deb ... 10569s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ... 10569s Selecting previously unselected package libstdc++-15-dev:amd64. 10569s Preparing to unpack .../086-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 10569s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 10569s Selecting previously unselected package libboost1.88-dev:amd64. 10569s Preparing to unpack .../087-libboost1.88-dev_1.88.0-1.4ubuntu3_amd64.deb ... 10569s Unpacking libboost1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 10570s Selecting previously unselected package libboost-container1.88.0:amd64. 10570s Preparing to unpack .../088-libboost-container1.88.0_1.88.0-1.4ubuntu3_amd64.deb ... 10570s Unpacking libboost-container1.88.0:amd64 (1.88.0-1.4ubuntu3) ... 10570s Selecting previously unselected package libboost-container1.88-dev:amd64. 10570s Preparing to unpack .../089-libboost-container1.88-dev_1.88.0-1.4ubuntu3_amd64.deb ... 10570s Unpacking libboost-container1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 10570s Selecting previously unselected package libboost-graph1.88.0:amd64. 10570s Preparing to unpack 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(1.88.0-1.4ubuntu3) ... 10570s Selecting previously unselected package libboost-python1.88.0. 10570s Preparing to unpack .../099-libboost-python1.88.0_1.88.0-1.4ubuntu3_amd64.deb ... 10570s Unpacking libboost-python1.88.0 (1.88.0-1.4ubuntu3) ... 10570s Selecting previously unselected package libboost-numpy1.88.0. 10570s Preparing to unpack .../100-libboost-numpy1.88.0_1.88.0-1.4ubuntu3_amd64.deb ... 10570s Unpacking libboost-numpy1.88.0 (1.88.0-1.4ubuntu3) ... 10570s Selecting previously unselected package libexpat1-dev:amd64. 10570s Preparing to unpack .../101-libexpat1-dev_2.7.4-1_amd64.deb ... 10570s Unpacking libexpat1-dev:amd64 (2.7.4-1) ... 10570s Selecting previously unselected package zlib1g-dev:amd64. 10570s Preparing to unpack .../102-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 10570s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 10570s Selecting previously unselected package libpython3.13-dev:amd64. 10570s Preparing to unpack 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previously unselected package libxcb-shm0:amd64. 10570s Preparing to unpack .../113-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 10570s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 10570s Selecting previously unselected package libxrender1:amd64. 10570s Preparing to unpack .../114-libxrender1_1%3a0.9.12-1_amd64.deb ... 10570s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 10570s Selecting previously unselected package libcairo2:amd64. 10570s Preparing to unpack .../115-libcairo2_1.18.4-3_amd64.deb ... 10570s Unpacking libcairo2:amd64 (1.18.4-3) ... 10570s Selecting previously unselected package libcairo-gobject2:amd64. 10570s Preparing to unpack .../116-libcairo-gobject2_1.18.4-3_amd64.deb ... 10570s Unpacking libcairo-gobject2:amd64 (1.18.4-3) ... 10570s Selecting previously unselected package libcbf1t64:amd64. 10570s Preparing to unpack .../117-libcbf1t64_0.9.7+dfsg1-5.1_amd64.deb ... 10570s Unpacking libcbf1t64:amd64 (0.9.7+dfsg1-5.1) ... 10570s Selecting previously unselected package libccp4-data. 10570s Preparing to unpack .../118-libccp4-data_8.0.0-5build1_all.deb ... 10570s Unpacking libccp4-data (8.0.0-5build1) ... 10570s Selecting previously unselected package libccp4c0t64:amd64. 10570s Preparing to unpack .../119-libccp4c0t64_8.0.0-5build1_amd64.deb ... 10570s Unpacking libccp4c0t64:amd64 (8.0.0-5build1) ... 10570s Selecting previously unselected package libmmdb2-0:amd64. 10570s Preparing to unpack .../120-libmmdb2-0_2.0.22-1build1_amd64.deb ... 10570s Unpacking libmmdb2-0:amd64 (2.0.22-1build1) ... 10570s Selecting previously unselected package libccp4f0t64:amd64. 10570s Preparing to unpack .../121-libccp4f0t64_8.0.0-5build1_amd64.deb ... 10570s Unpacking libccp4f0t64:amd64 (8.0.0-5build1) ... 10570s Selecting previously unselected package libccp4-dev:amd64. 10570s Preparing to unpack .../122-libccp4-dev_8.0.0-5build1_amd64.deb ... 10570s Unpacking libccp4-dev:amd64 (8.0.0-5build1) ... 10570s Selecting previously unselected package libcctbx0. 10570s 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unpack .../133-libx11-xcb1_2%3a1.8.12-1build1_amd64.deb ... 10571s Unpacking libx11-xcb1:amd64 (2:1.8.12-1build1) ... 10571s Selecting previously unselected package libxcb-dri3-0:amd64. 10571s Preparing to unpack .../134-libxcb-dri3-0_1.17.0-2ubuntu1_amd64.deb ... 10571s Unpacking libxcb-dri3-0:amd64 (1.17.0-2ubuntu1) ... 10571s Selecting previously unselected package libxcb-present0:amd64. 10571s Preparing to unpack .../135-libxcb-present0_1.17.0-2ubuntu1_amd64.deb ... 10571s Unpacking libxcb-present0:amd64 (1.17.0-2ubuntu1) ... 10571s Selecting previously unselected package libxcb-randr0:amd64. 10571s Preparing to unpack .../136-libxcb-randr0_1.17.0-2ubuntu1_amd64.deb ... 10571s Unpacking libxcb-randr0:amd64 (1.17.0-2ubuntu1) ... 10571s Selecting previously unselected package libxcb-sync1:amd64. 10571s Preparing to unpack .../137-libxcb-sync1_1.17.0-2ubuntu1_amd64.deb ... 10571s Unpacking libxcb-sync1:amd64 (1.17.0-2ubuntu1) ... 10571s Selecting previously unselected package 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unselected package libepoxy0:amd64. 10571s Preparing to unpack .../143-libepoxy0_1.5.10-2build1_amd64.deb ... 10571s Unpacking libepoxy0:amd64 (1.5.10-2build1) ... 10571s Selecting previously unselected package libogg0:amd64. 10571s Preparing to unpack .../144-libogg0_1.3.6-2_amd64.deb ... 10571s Unpacking libogg0:amd64 (1.3.6-2) ... 10571s Selecting previously unselected package libflac14:amd64. 10571s Preparing to unpack .../145-libflac14_1.5.0+ds-5_amd64.deb ... 10571s Unpacking libflac14:amd64 (1.5.0+ds-5) ... 10571s Selecting previously unselected package libvulkan1:amd64. 10571s Preparing to unpack .../146-libvulkan1_1.4.335.0-1_amd64.deb ... 10571s Unpacking libvulkan1:amd64 (1.4.335.0-1) ... 10571s Selecting previously unselected package libgl1-mesa-dri:amd64. 10571s Preparing to unpack .../147-libgl1-mesa-dri_25.3.3-1ubuntu1_amd64.deb ... 10571s Unpacking libgl1-mesa-dri:amd64 (25.3.3-1ubuntu1) ... 10571s Selecting previously unselected package libglvnd0:amd64. 10571s 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unpack .../184-libmpg123-0t64_1.33.3-2_amd64.deb ... 10572s Unpacking libmpg123-0t64:amd64 (1.33.3-2) ... 10572s Selecting previously unselected package libnetcdf22:amd64. 10572s Preparing to unpack .../185-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 10572s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 10572s Selecting previously unselected package libnotify4:amd64. 10572s Preparing to unpack .../186-libnotify4_0.8.8-1_amd64.deb ... 10572s Unpacking libnotify4:amd64 (0.8.8-1) ... 10572s Selecting previously unselected package libopus0:amd64. 10572s Preparing to unpack .../187-libopus0_1.6.1-1_amd64.deb ... 10572s Unpacking libopus0:amd64 (1.6.1-1) ... 10572s Selecting previously unselected package libpcre2-16-0:amd64. 10572s Preparing to unpack .../188-libpcre2-16-0_10.46-1_amd64.deb ... 10572s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 10572s Selecting previously unselected package libpcre2-32-0:amd64. 10572s Preparing to unpack .../189-libpcre2-32-0_10.46-1_amd64.deb ... 10572s 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previously unselected package libxcb-xkb1:amd64. 10572s Preparing to unpack .../209-libxcb-xkb1_1.17.0-2ubuntu1_amd64.deb ... 10572s Unpacking libxcb-xkb1:amd64 (1.17.0-2ubuntu1) ... 10572s Selecting previously unselected package libxkbcommon-x11-0:amd64. 10572s Preparing to unpack .../210-libxkbcommon-x11-0_1.12.3-1_amd64.deb ... 10572s Unpacking libxkbcommon-x11-0:amd64 (1.12.3-1) ... 10572s Selecting previously unselected package libqt5gui5t64:amd64. 10572s Preparing to unpack .../211-libqt5gui5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 10572s Unpacking libqt5gui5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 10572s Selecting previously unselected package libqt5widgets5t64:amd64. 10572s Preparing to unpack .../212-libqt5widgets5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 10572s Unpacking libqt5widgets5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 10572s Selecting previously unselected package libqt5xml5t64:amd64. 10572s Preparing to unpack .../213-libqt5xml5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 10572s Unpacking libqt5xml5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 10572s Selecting previously unselected package libqt5designer5:amd64. 10572s Preparing to unpack .../214-libqt5designer5_5.15.18-1_amd64.deb ... 10572s Unpacking libqt5designer5:amd64 (5.15.18-1) ... 10572s Selecting previously unselected package libqt5sql5t64:amd64. 10572s Preparing to unpack .../215-libqt5sql5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 10572s Unpacking libqt5sql5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 10572s Selecting previously unselected package libqt5help5:amd64. 10572s Preparing to unpack .../216-libqt5help5_5.15.18-1_amd64.deb ... 10572s Unpacking libqt5help5:amd64 (5.15.18-1) ... 10572s Selecting previously unselected package libqt5opengl5t64:amd64. 10572s Preparing to unpack .../217-libqt5opengl5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 10572s Unpacking libqt5opengl5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 10572s Selecting previously unselected package libqt5printsupport5t64:amd64. 10572s Preparing to unpack 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libsdl2-classic:amd64. 10572s Preparing to unpack .../223-libsdl2-classic_2.32.10+dfsg-6_amd64.deb ... 10572s Unpacking libsdl2-classic:amd64 (2.32.10+dfsg-6) ... 10572s Selecting previously unselected package libsdl2-2.0-0:amd64. 10572s Preparing to unpack .../224-libsdl2-2.0-0_2.32.10+dfsg-6_amd64.deb ... 10572s Unpacking libsdl2-2.0-0:amd64 (2.32.10+dfsg-6) ... 10572s Selecting previously unselected package libssm2:amd64. 10572s Preparing to unpack .../225-libssm2_1.4.0-2build2_amd64.deb ... 10572s Unpacking libssm2:amd64 (1.4.0-2build2) ... 10572s Selecting previously unselected package libtcl8.6:amd64. 10572s Preparing to unpack .../226-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 10572s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 10572s Selecting previously unselected package libxft2:amd64. 10572s Preparing to unpack .../227-libxft2_2.3.6-1build2_amd64.deb ... 10572s Unpacking libxft2:amd64 (2.3.6-1build2) ... 10572s Selecting previously unselected package libtk8.6:amd64. 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to unpack .../238-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 10573s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 10573s Selecting previously unselected package python3.14. 10573s Preparing to unpack .../239-python3.14_3.14.2-1_amd64.deb ... 10573s Unpacking python3.14 (3.14.2-1) ... 10573s Selecting previously unselected package python3-all. 10573s Preparing to unpack .../240-python3-all_3.13.9-3_amd64.deb ... 10573s Unpacking python3-all (3.13.9-3) ... 10573s Selecting previously unselected package python3-brotli. 10573s Preparing to unpack .../241-python3-brotli_1.1.0-2build6_amd64.deb ... 10573s Unpacking python3-brotli (1.1.0-2build6) ... 10573s Selecting previously unselected package python3-legacy-cgi. 10573s Preparing to unpack .../242-python3-legacy-cgi_2.6.4-2_all.deb ... 10573s Unpacking python3-legacy-cgi (2.6.4-2) ... 10573s Selecting previously unselected package python3-pycbf. 10573s Preparing to unpack .../243-python3-pycbf_0.9.7+dfsg1-5.1_amd64.deb ... 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python3-lz4. 10573s Preparing to unpack .../254-python3-lz4_4.4.5+dfsg-1_amd64.deb ... 10573s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 10573s Selecting previously unselected package python3-decorator. 10573s Preparing to unpack .../255-python3-decorator_5.2.1-2_all.deb ... 10573s Unpacking python3-decorator (5.2.1-2) ... 10573s Selecting previously unselected package python3-scipy. 10573s Preparing to unpack .../256-python3-scipy_1.16.3-4_amd64.deb ... 10573s Unpacking python3-scipy (1.16.3-4) ... 10573s Selecting previously unselected package python3-mpmath. 10573s Preparing to unpack .../257-python3-mpmath_1.3.0-2_all.deb ... 10573s Unpacking python3-mpmath (1.3.0-2) ... 10573s Selecting previously unselected package python3-sympy. 10573s Preparing to unpack .../258-python3-sympy_1.14.0-2_all.deb ... 10573s Unpacking python3-sympy (1.14.0-2) ... 10573s Selecting previously unselected package python3-ufolib2. 10573s Preparing to unpack .../259-python3-ufolib2_0.18.1+dfsg1-1_all.deb 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python3-matplotlib (3.10.7+dfsg1-1) ... 10574s Selecting previously unselected package sphinx-rtd-theme-common. 10574s Preparing to unpack .../265-sphinx-rtd-theme-common_3.0.2+dfsg-3_all.deb ... 10574s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-3) ... 10574s Selecting previously unselected package python3-mrcfile. 10574s Preparing to unpack .../266-python3-mrcfile_1.5.4-2_all.deb ... 10574s Unpacking python3-mrcfile (1.5.4-2) ... 10574s Selecting previously unselected package python3-natsort. 10574s Preparing to unpack .../267-python3-natsort_8.4.0-2_all.deb ... 10574s Unpacking python3-natsort (8.4.0-2) ... 10574s Selecting previously unselected package python3-flexcache. 10574s Preparing to unpack .../268-python3-flexcache_0.3-3_all.deb ... 10574s Unpacking python3-flexcache (0.3-3) ... 10574s Selecting previously unselected package python3-flexparser. 10574s Preparing to unpack .../269-python3-flexparser_0.4-2_all.deb ... 10574s Unpacking python3-flexparser (0.4-2) ... 10574s 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(1:1.3.dfsg+really1.3.1-1ubuntu2) ... 10600s Setting up libcairo-gobject2:amd64 (1.18.4-3) ... 10600s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ... 10600s Setting up python3-nxmx (0.0.4-1build1) ... 10601s Setting up libcups2t64:amd64 (2.4.16-1ubuntu1) ... 10601s Setting up libgtk-3-common (3.24.50-1ubuntu2) ... 10601s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ... 10601s Setting up libcctbx0 (2025.12+ds2+~3.26.0+ds1-3) ... 10601s Setting up libucx0:amd64 (1.20.0+ds-4ubuntu1) ... 10601s Setting up python3.14-tk (3.14.2-1) ... 10601s Setting up libsdl2-classic:amd64 (2.32.10+dfsg-6) ... 10601s Setting up libboost1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 10601s Setting up python3-tk (3.13.9-3) ... 10601s Setting up python3-opengl (3.1.10+dfsg-1) ... 10602s Setting up libqt5gui5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 10602s Setting up python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 10603s Setting up libboost-container1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 10603s Setting up libpython3.13-dev:amd64 (3.13.11-1) ... 10603s Setting up libsdl2-2.0-0:amd64 (2.32.10+dfsg-6) ... 10603s Setting up libboost-serialization1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 10603s Setting up libopenmpi40:amd64 (5.0.8-8ubuntu1) ... 10603s Setting up libboost-regex1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 10603s Setting up libpython3-dev:amd64 (3.13.9-3) ... 10603s Setting up libqt5widgets5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 10603s Setting up libboost-test1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 10603s Setting up python3.13-dev (3.13.11-1) ... 10603s Setting up libhdf5-openmpi-310:amd64 (1.14.6+repack-2) ... 10603s Setting up libqt5help5:amd64 (5.15.18-1) ... 10603s Setting up python3-dev (3.13.9-3) ... 10603s Setting up libqt5opengl5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 10603s Setting up libqt5printsupport5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 10603s Setting up bitshuffle (0.5.2-1build3) ... 10603s Setting up libboost-graph1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 10603s Setting up libqt5designer5:amd64 (5.15.18-1) ... 10603s Setting up libboost-python1.88-dev (1.88.0-1.4ubuntu3) ... 10603s Setting up python3-pyqt5 (5.15.11+dfsg-3build2) ... 10603s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-3build2) ... 10603s Setting up libboost-python-dev (1.88.0.0ubuntu3) ... 10603s Setting up python3-pymol (3.1.0+dfsg-1build2) ... 10604s Setting up libcctbx-dev (2025.12+ds2+~3.26.0+ds1-3) ... 10604s Setting up python3-fonttools (4.61.1-3) ... 10605s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 10605s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 10607s Processing triggers for libc-bin (2.42-2ubuntu4) ... 10607s Processing triggers for systemd (259-1ubuntu3) ... 10607s Processing triggers for man-db (2.13.1-1) ... 10608s Processing triggers for libglib2.0-0t64:amd64 (2.86.3-4) ... 10608s Setting up libgtk-3-0t64:amd64 (3.24.50-1ubuntu2) ... 10608s Processing triggers for udev (259-1ubuntu3) ... 10608s Setting up libwxgtk3.2-1t64:amd64 (3.2.9+dfsg-1) ... 10608s Setting up libwxgtk-gl3.2-1t64:amd64 (3.2.9+dfsg-1) ... 10608s Setting up python3-wxgtk4.0 (4.2.4+dfsg-1) ... 10610s Setting up python3-cctbx (2025.12+ds2+~3.26.0+ds1-3) ... 10618s /usr/lib/python3/dist-packages/cootbx/interactive_edit.py:48: SyntaxWarning: 'return' in a 'finally' block 10618s return new_text 10619s /usr/lib/python3/dist-packages/libtbx/utils.py:2433: SyntaxWarning: 'return' in a 'finally' block 10619s return new_text 10619s /usr/lib/python3/dist-packages/libtbx/utils.py:2472: SyntaxWarning: 'return' in a 'finally' block 10619s return new_text 10687s Processing triggers for libc-bin (2.42-2ubuntu4) ... 10706s autopkgtest [03:10:05]: test dxtbx: [----------------------- 10706s Testing dxtbx with python3.14: 10709s ============================= test session starts ============================== 10709s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 10709s rootdir: /tmp/autopkgtest.fP5nLD/autopkgtest_tmp 10709s plugins: regressions-2.5.0+ds, dials_data-2.4.0, datadir-1.4.1+ds, mock-3.15.1, typeguard-4.4.4 10709s collected 400 items / 3 skipped 10709s 10709s tests/command_line/test_average.py ss [ 0%] 10709s tests/command_line/test_dlsnxs2cbf.py sss. [ 1%] 10709s tests/command_line/test_plot_detector_models.py s [ 1%] 10709s tests/command_line/test_print_header.py s [ 2%] 10709s tests/command_line/test_show_mask_info.py s [ 2%] 10709s tests/format/test_FormatCBFFullPilatusDLS6MSN126.py s [ 2%] 10709s tests/format/test_FormatCBFMiniEigerDLS16MSN160.py s [ 2%] 10709s tests/format/test_FormatCBFMiniPilatus.py ss [ 3%] 10709s tests/format/test_FormatCBFMiniPilatusDLS12M.py ssssssssssssss [ 6%] 10709s tests/format/test_FormatHDF5EigerNearlyNexus.py sss [ 7%] 10709s tests/format/test_FormatHDF5EigerNearlyNexusSPring8.py s [ 7%] 10709s tests/format/test_FormatHDF5SaclaMPCCD.py ssssss [ 9%] 10709s tests/format/test_FormatISISSXD.py s [ 9%] 10709s tests/format/test_FormatNXmx.py .. [ 10%] 10709s tests/format/test_FormatNXmxDLS.py s [ 10%] 10709s tests/format/test_FormatPYunspecified.py s [ 10%] 10709s tests/format/test_FormatSMVADSC.py s [ 10%] 10709s tests/format/test_abstract.py . [ 11%] 10709s tests/format/test_cbf_mini_as_file.py ss [ 11%] 10709s tests/format/test_format.py s [ 11%] 10709s tests/format/test_nexus.py s...... [ 13%] 10709s tests/format/test_uri.py ..... [ 14%] 10717s tests/masking/test_masking.py .............s. [ 18%] 10717s tests/model/test_beam.py ............. [ 21%] 10717s tests/model/test_crystal_model.py .............. [ 25%] 10717s tests/model/test_detector.py .................s.... [ 30%] 10717s tests/model/test_detector2.py ........... [ 33%] 10717s tests/model/test_experiment_list.py ...s......sss..ss.ss.s..ss.s.......s [ 42%] 10717s ss.s.. [ 44%] 10717s tests/model/test_parallax_correction.py s [ 44%] 10717s tests/model/test_pickle.py ...... [ 45%] 10717s tests/model/test_pixel_to_millimeter.py ss... [ 47%] 10717s tests/model/test_profile.py s [ 47%] 10717s tests/model/test_ray_intersection.py ... [ 48%] 10717s tests/model/test_scan.py ........... [ 50%] 10717s tests/model/test_scan_data.py ........... [ 53%] 10717s tests/model/test_scan_helpers.py .... [ 54%] 10717s tests/model/test_spectrum.py ... [ 55%] 10717s tests/model/test_to_from_dict.py .... [ 56%] 10717s tests/model/test_tof_helpers.py .... [ 57%] 10717s tests/nexus/test_jf16M.py s [ 57%] 10717s tests/nexus/test_mpccd_nexus.py s [ 57%] 10717s tests/serialize/test_crystal_model_serialize.py ...... [ 59%] 10717s tests/serialize/test_filename.py . [ 59%] 10717s tests/serialize/test_serialize.py ...... [ 61%] 10717s tests/serialize/test_xds.py ssss [ 62%] 10717s tests/test_FormatCBFFull.py ss [ 62%] 10717s tests/test_beam.py . [ 62%] 10717s tests/test_beamline_definitions.py .. [ 63%] 10717s tests/test_compression.py . [ 63%] 10717s tests/test_crystal_model_equivalence.py . [ 63%] 10717s tests/test_dataset_as_flex.py ......... [ 66%] 10717s tests/test_detector.py . [ 66%] 10717s tests/test_exceptions.py . [ 66%] 10718s tests/test_filecache.py .s. [ 67%] 10718s tests/test_filecache_controller.py . [ 67%] 10718s tests/test_flumpy.py ................................................... [ 80%] 10718s ...............................................x...s. [ 93%] 10718s tests/test_goniometer.py ......... [ 95%] 10718s tests/test_image_readers.py s [ 96%] 10718s tests/test_scan.py .. [ 96%] 10718s tests/test_sequence_filenames.py ........ss [ 99%] 10718s tests/test_split_singleimage_imageset.py s [ 99%] 10718s tests/test_util.py ... [100%] 10718s 10718s ================= 319 passed, 83 skipped, 1 xfailed in 10.41s ================== 10718s Testing dxtbx with python3.13: 10720s ============================= test session starts ============================== 10720s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 10720s rootdir: /tmp/autopkgtest.fP5nLD/autopkgtest_tmp 10720s plugins: regressions-2.5.0+ds, dials_data-2.4.0, datadir-1.4.1+ds, mock-3.15.1, typeguard-4.4.4 10720s collected 400 items / 3 skipped 10720s 10720s tests/command_line/test_average.py ss [ 0%] 10720s tests/command_line/test_dlsnxs2cbf.py sss. [ 1%] 10720s tests/command_line/test_plot_detector_models.py s [ 1%] 10720s tests/command_line/test_print_header.py s [ 2%] 10720s tests/command_line/test_show_mask_info.py s [ 2%] 10720s tests/format/test_FormatCBFFullPilatusDLS6MSN126.py s [ 2%] 10720s tests/format/test_FormatCBFMiniEigerDLS16MSN160.py s [ 2%] 10720s tests/format/test_FormatCBFMiniPilatus.py ss [ 3%] 10720s tests/format/test_FormatCBFMiniPilatusDLS12M.py ssssssssssssss [ 6%] 10720s tests/format/test_FormatHDF5EigerNearlyNexus.py sss [ 7%] 10720s tests/format/test_FormatHDF5EigerNearlyNexusSPring8.py s [ 7%] 10720s tests/format/test_FormatHDF5SaclaMPCCD.py ssssss [ 9%] 10720s tests/format/test_FormatISISSXD.py s [ 9%] 10720s tests/format/test_FormatNXmx.py .. [ 10%] 10720s tests/format/test_FormatNXmxDLS.py s [ 10%] 10720s tests/format/test_FormatPYunspecified.py s [ 10%] 10720s tests/format/test_FormatSMVADSC.py s [ 10%] 10720s tests/format/test_abstract.py . [ 11%] 10720s tests/format/test_cbf_mini_as_file.py ss [ 11%] 10720s tests/format/test_format.py s [ 11%] 10720s tests/format/test_nexus.py s...... [ 13%] 10720s tests/format/test_uri.py ..... [ 14%] 10729s tests/masking/test_masking.py .............s. [ 18%] 10729s tests/model/test_beam.py ............. [ 21%] 10729s tests/model/test_crystal_model.py .............. [ 25%] 10729s tests/model/test_detector.py .................s.... [ 30%] 10729s tests/model/test_detector2.py ........... [ 33%] 10729s tests/model/test_experiment_list.py ...s......sss..ss.ss.s..ss.s.......s [ 42%] 10729s ss.s.. [ 44%] 10729s tests/model/test_parallax_correction.py s [ 44%] 10729s tests/model/test_pickle.py ...... [ 45%] 10729s tests/model/test_pixel_to_millimeter.py ss... [ 47%] 10729s tests/model/test_profile.py s [ 47%] 10729s tests/model/test_ray_intersection.py ... [ 48%] 10729s tests/model/test_scan.py ........... [ 50%] 10729s tests/model/test_scan_data.py ........... [ 53%] 10729s tests/model/test_scan_helpers.py .... [ 54%] 10729s tests/model/test_spectrum.py ... [ 55%] 10729s tests/model/test_to_from_dict.py .... [ 56%] 10729s tests/model/test_tof_helpers.py .... [ 57%] 10729s tests/nexus/test_jf16M.py s [ 57%] 10729s tests/nexus/test_mpccd_nexus.py s [ 57%] 10729s tests/serialize/test_crystal_model_serialize.py ...... [ 59%] 10729s tests/serialize/test_filename.py . [ 59%] 10729s tests/serialize/test_serialize.py ...... [ 61%] 10729s tests/serialize/test_xds.py ssss [ 62%] 10729s tests/test_FormatCBFFull.py ss [ 62%] 10729s tests/test_beam.py . [ 62%] 10729s tests/test_beamline_definitions.py .. [ 63%] 10729s tests/test_compression.py . [ 63%] 10729s tests/test_crystal_model_equivalence.py . [ 63%] 10729s tests/test_dataset_as_flex.py ......... [ 66%] 10729s tests/test_detector.py . [ 66%] 10729s tests/test_exceptions.py . [ 66%] 10729s tests/test_filecache.py .s. [ 67%] 10729s tests/test_filecache_controller.py . [ 67%] 10729s tests/test_flumpy.py ................................................... [ 80%] 10729s ...............................................x...s. [ 93%] 10729s tests/test_goniometer.py ......... [ 95%] 10729s tests/test_image_readers.py s [ 96%] 10729s tests/test_scan.py .. [ 96%] 10729s tests/test_sequence_filenames.py ........ss [ 99%] 10729s tests/test_split_singleimage_imageset.py s [ 99%] 10730s tests/test_util.py ... [100%] 10730s 10730s ================= 319 passed, 83 skipped, 1 xfailed in 10.51s ================== 10730s autopkgtest [03:10:29]: test dxtbx: -----------------------] 10730s autopkgtest [03:10:29]: test dxtbx: - - - - - - - - - - results - - - - - - - - - - 10730s dxtbx PASS 10731s autopkgtest [03:10:30]: @@@@@@@@@@@@@@@@@@@@ summary 10731s cctbx FAIL timed out 10731s dxtbx PASS