0s autopkgtest [20:29:32]: starting date and time: 2026-02-06 20:29:32+0000
  0s autopkgtest [20:29:32]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [20:29:32]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hvgtcivn/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade cctbx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-13.secgroup --name adt-resolute-amd64-cctbx-20260206-173423-juju-7f2275-prod-proposed-migration-environment-20-d7df366b-40dc-4bc4-b905-bd6c6cca8336 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  4s Creating nova instance adt-resolute-amd64-cctbx-20260206-173423-juju-7f2275-prod-proposed-migration-environment-20-d7df366b-40dc-4bc4-b905-bd6c6cca8336 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
 81s autopkgtest [20:30:53]: testbed dpkg architecture: amd64
 81s autopkgtest [20:30:53]: testbed apt version: 3.1.14
 81s autopkgtest [20:30:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 82s autopkgtest [20:30:54]: testbed release detected to be: None
 82s autopkgtest [20:30:54]: updating testbed package index (apt update)
 82s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
 83s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 83s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 83s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 83s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [199 kB]
 83s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1528 kB]
 83s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB]
 83s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.1 kB]
 83s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [188 kB]
 83s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [265 kB]
 83s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6500 B]
 83s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B]
 83s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB]
 83s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B]
 83s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [550 kB]
 83s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1432 kB]
 83s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [36.8 kB]
 83s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4892 B]
 83s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [28.2 kB]
 83s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1104 B]
 84s Fetched 4492 kB in 1s (4837 kB/s)
 85s Reading package lists...
 85s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
 85s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
 85s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
 85s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
 86s Reading package lists...
 86s Reading package lists...
 86s Building dependency tree...
 86s Reading state information...
 86s Calculating upgrade...
 86s The following packages will be upgraded:
 86s   amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less
 86s   libapt-pkg7.0 libattr1 libc-bin libc-gconv-modules-extra libc6
 86s   libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2 libgpm2 libkeyutils1
 86s   libmaxminddb0 libnpth0t64 libsensors-config libsensors5 locales mawk patch
 86s   pollinate python3-linkify-it python3-markdown-it python3-referencing sed tar
 86s 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 86s Need to get 14.4 MB of archives.
 86s After this operation, 270 kB disk space will be freed.
 86s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
 86s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
 86s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
 86s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-gconv-modules-extra amd64 2.42-2ubuntu5 [1394 kB]
 87s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6 amd64 2.42-2ubuntu5 [2041 kB]
 87s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-bin amd64 2.42-2ubuntu5 [702 kB]
 87s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
 87s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
 87s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
 87s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
 87s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
 87s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
 87s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
 87s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
 87s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 locales all 2.42-2ubuntu5 [4255 kB]
 87s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
 87s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
 87s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
 87s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
 87s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
 87s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
 87s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
 87s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
 87s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
 87s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
 87s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
 87s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
 87s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
 87s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
 87s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
 87s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
 87s dpkg-preconfigure: unable to re-open stdin: No such file or directory
 87s Fetched 14.4 MB in 1s (24.1 MB/s)
 87s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 87s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
 87s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
 87s Setting up findutils (4.10.0-3build2) ...
 87s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 87s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
 87s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
 87s Setting up sed (4.9-2build3) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
 88s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
 88s Setting up tar (1.35+dfsg-3.1build2) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_amd64.deb ...
 88s Unpacking libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ...
 88s Setting up libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) ...
 88s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../libc6_2.42-2ubuntu5_amd64.deb ...
 88s Unpacking libc6:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ...
 88s Setting up libc6:amd64 (2.42-2ubuntu5) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../libc-bin_2.42-2ubuntu5_amd64.deb ...
 88s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ...
 88s Setting up libc-bin (2.42-2ubuntu5) ...
 88s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ...
 88s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ...
 88s Setting up libattr1:amd64 (1:2.5.2-3build2) ...
 88s (Reading database ... 
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(Reading database ... 83957 files and directories currently installed.)
 88s Preparing to unpack .../00-mawk_1.3.4.20260129-1_amd64.deb ...
 88s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ...
 88s Preparing to unpack .../01-libapt-pkg7.0_3.1.15_amd64.deb ...
 88s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ...
 88s Preparing to unpack .../02-apt_3.1.15_amd64.deb ...
 88s Unpacking apt (3.1.15) over (3.1.14) ...
 89s Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ...
 89s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ...
 89s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ...
 89s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ...
 89s Preparing to unpack .../05-less_668-1build1_amd64.deb ...
 89s Unpacking less (668-1build1) over (668-1) ...
 89s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ...
 89s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ...
 89s Preparing to unpack .../07-locales_2.42-2ubuntu5_all.deb ...
 89s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ...
 89s Preparing to unpack .../08-python3-linkify-it_2.0.3-1ubuntu3_all.deb ...
 89s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ...
 89s Preparing to unpack .../09-python3-markdown-it_3.0.0-3build1_all.deb ...
 89s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ...
 89s Preparing to unpack .../10-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ...
 89s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ...
 89s Preparing to unpack .../11-libdrm-common_2.4.131-1_all.deb ...
 89s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ...
 89s Preparing to unpack .../12-libdrm2_2.4.131-1_amd64.deb ...
 89s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ...
 89s Preparing to unpack .../13-libgpm2_1.20.7-12build1_amd64.deb ...
 89s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ...
 89s Preparing to unpack .../14-libmaxminddb0_1.12.2-1build2_amd64.deb ...
 89s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ...
 89s Preparing to unpack .../15-libsensors-config_1%3a3.6.2-2build1_all.deb ...
 89s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ...
 89s Preparing to unpack .../16-libsensors5_1%3a3.6.2-2build1_amd64.deb ...
 89s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ...
 89s Preparing to unpack .../17-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ...
 89s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ...
 89s Preparing to unpack .../18-libdrm-amdgpu1_2.4.131-1_amd64.deb ...
 89s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ...
 89s Preparing to unpack .../19-libnpth0t64_1.8-3build1_amd64.deb ...
 89s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ...
 89s Preparing to unpack .../20-patch_2.8-2build1_amd64.deb ...
 89s Unpacking patch (2.8-2build1) over (2.8-2) ...
 89s Preparing to unpack .../21-pollinate_4.33-4ubuntu5_all.deb ...
 89s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ...
 89s Preparing to unpack .../22-python3-referencing_0.36.2-1ubuntu2_all.deb ...
 89s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ...
 89s Preparing to unpack .../23-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ...
 89s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ...
 90s Setting up libnpth0t64:amd64 (1.8-3build1) ...
 90s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ...
 90s Setting up libgpm2:amd64 (1.20.7-12build1) ...
 90s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ...
 90s Setting up libsensors-config (1:3.6.2-2build1) ...
 90s Setting up less (668-1build1) ...
 90s Setting up amd64-microcode (3.20251202.1ubuntu1) ...
 90s amd64-microcode: microcode will be updated at next boot
 90s Setting up locales (2.42-2ubuntu5) ...
 90s Generating locales (this might take a while)...
 91s   en_US.UTF-8... done
 91s Generation complete.
 91s Setting up pollinate (4.33-4ubuntu5) ...
101s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
101s Setting up patch (2.8-2build1) ...
101s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
101s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
101s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
101s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
101s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
101s Setting up mawk (1.3.4.20260129-1) ...
101s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
101s Setting up libdrm-common (2.4.131-1) ...
101s Setting up python3-referencing (0.36.2-1ubuntu2) ...
102s Setting up apt (3.1.15) ...
102s Setting up python3-markdown-it (3.0.0-3build1) ...
102s Setting up libdrm2:amd64 (2.4.131-1) ...
102s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
102s Processing triggers for libc-bin (2.42-2ubuntu5) ...
102s Processing triggers for systemd (259-1ubuntu3) ...
103s Processing triggers for man-db (2.13.1-1) ...
104s Processing triggers for install-info (7.2-5) ...
104s Processing triggers for initramfs-tools (0.150ubuntu7) ...
104s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
109s autopkgtest [20:31:21]: upgrading testbed (apt dist-upgrade and autopurge)
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
110s Calculating upgrade...
110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
110s Solving dependencies...
111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
111s autopkgtest [20:31:23]: rebooting testbed after setup commands that affected boot
139s autopkgtest [20:31:51]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026
141s autopkgtest [20:31:53]: @@@@@@@@@@@@@@@@@@@@ apt-source cctbx
143s Get:1 http://ftpmaster.internal/ubuntu resolute/universe cctbx 2025.12+ds2+~3.26.0+ds1-3 (dsc) [3880 B]
143s Get:2 http://ftpmaster.internal/ubuntu resolute/universe cctbx 2025.12+ds2+~3.26.0+ds1-3 (tar) [27.0 MB]
143s Get:3 http://ftpmaster.internal/ubuntu resolute/universe cctbx 2025.12+ds2+~3.26.0+ds1-3 (diff) [420 kB]
144s gpgv: Signature made Wed Jan 21 19:47:36 2026 UTC
144s gpgv:                using RSA key 8F6DE104377F3B11E741748731F3144544A1741A
144s gpgv:                issuer "tchet@debian.org"
144s gpgv: Can't check signature: No public key
144s dpkg-source: warning: cannot verify inline signature for ./cctbx_2025.12+ds2+~3.26.0+ds1-3.dsc: no acceptable signature found
144s autopkgtest [20:31:56]: testing package cctbx version 2025.12+ds2+~3.26.0+ds1-3
146s autopkgtest [20:31:58]: build not needed
156s autopkgtest [20:32:08]: test cctbx: preparing testbed
156s Reading package lists...
157s Building dependency tree...
157s Reading state information...
157s Solving dependencies...
157s The following NEW packages will be installed:
157s   adwaita-icon-theme at-spi2-common cpp cpp-15 cpp-15-x86-64-linux-gnu
157s   cpp-x86-64-linux-gnu dconf-gsettings-backend dconf-service fontconfig
157s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
157s   fonts-lato fonts-lyx g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu
157s   gcc gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu
157s   gtk-update-icon-cache hicolor-icon-theme icu-devtools libann-cctbx-dev
157s   libann-cctbx0 libantlr3c-3.4-0 libasan8 libasound2-data libasound2t64
157s   libasyncns0 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64
157s   libavahi-client3 libavahi-common-data libavahi-common3 libblas3
157s   libboost-container1.88-dev libboost-container1.88.0 libboost-graph1.88-dev
157s   libboost-graph1.88.0 libboost-numpy1.88.0 libboost-python-dev
157s   libboost-python1.88-dev libboost-python1.88.0 libboost-regex1.88-dev
157s   libboost-regex1.88.0 libboost-serialization1.88-dev
157s   libboost-serialization1.88.0 libboost-test1.88-dev libboost-test1.88.0
157s   libboost-thread1.88.0 libboost-timer1.88.0 libboost1.88-dev libc-dev-bin
157s   libc6-dev libcairo-gobject2 libcairo2 libcbf1t64 libcc1-0 libccp4-data
157s   libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 libcolord2
157s   libcrypt-dev libcups2t64 libdatrie1 libdconf1 libdecor-0-0 libdeflate0
157s   libdouble-conversion3 libdrm-intel1 libegl-mesa0 libegl1 libepoxy0
157s   libexpat1-dev libflac14 libfontconfig1 libgbm1 libgcc-15-dev
157s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1
157s   libgl1-mesa-dri libgles2 libglew2.2 libglu1-mesa libglut3.12 libglvnd0
157s   libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0t64 libgtk-3-common
157s   libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 libice6 libicu-dev
157s   libimagequant0 libinput-bin libinput10 libisl23 libitm1 libjbig0
157s   libjpeg-turbo8 libjpeg8 libjs-jquery liblapack3 liblcms2-2 liblerc4 liblsan0
157s   liblzf1 libmd4c0 libmmdb2-0 libmp3lame0 libmpc3 libmpg123-0t64 libmtdev1t64
157s   libnetcdf22 libnotify4 libogg0 libopengl0 libopenjp2-7 libopus0
157s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0
157s   libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpulse0 libpython3-dev
157s   libpython3.13-dev libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0
157s   libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5
157s   libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64
157s   libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libquadmath0 libraqm0
157s   libsamplerate0 libsdl2-2.0-0 libsdl2-classic libsharpyuv0 libsm6 libsndfile1
157s   libssm2 libstdc++-15-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6
157s   libtk8.6 libtsan2 libubsan1 libvorbis0a libvorbisenc2 libvulkan1
157s   libwacom-common libwacom9 libwayland-client0 libwayland-cursor0
157s   libwayland-egl1 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64
157s   libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 libxcb-dri3-0 libxcb-glx0
157s   libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
157s   libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
157s   libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
157s   libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6
157s   libxinerama1 libxkbcommon-x11-0 libxrandr2 libxrender1 libxshmfence1
157s   libxslt1.1 libxss1 libxtst6 libxxf86vm1 libzopfli1 linux-libc-dev
157s   mesa-libgallium pymol-data python-matplotlib-data python3-all python3-brotli
157s   python3-cctbx python3-contourpy python3-cycler python3-decorator python3-dev
157s   python3-flexcache python3-flexparser python3-fonttools python3-h5py
157s   python3-h5py-serial python3-hdf5plugin python3-iniconfig python3-kiwisolver
157s   python3-legacy-cgi python3-lxml python3-lz4 python3-matplotlib
157s   python3-mpmath python3-mrcfile python3-natsort python3-numpy
157s   python3-numpy-dev python3-nxmx python3-opengl python3-ordered-set
157s   python3-pil python3-pil.imagetk python3-pint python3-platformdirs
157s   python3-pluggy python3-procrunner python3-pycbf python3-pymol python3-pyqt5
157s   python3-pyqt5.qtopengl python3-pyqt5.sip python3-pytest python3-scipy
157s   python3-sympy python3-tk python3-tqdm python3-ufolib2 python3-wxgtk4.0
157s   python3-zopfli python3.13-dev python3.13-tk python3.14 python3.14-minimal
157s   python3.14-tk rpcsvc-proto sphinx-rtd-theme-common unicode-data x11-common
157s   zlib1g-dev
157s 0 upgraded, 285 newly installed, 0 to remove and 0 not upgraded.
157s Need to get 314 MB of archives.
157s After this operation, 1540 MB of additional disk space will be used.
157s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-lato all 2.015-1build1 [2779 kB]
157s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB]
157s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
157s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB]
157s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
157s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB]
157s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
157s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB]
157s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [8584 B]
157s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB]
157s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
157s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB]
157s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
157s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
157s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
157s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
157s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
157s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.4+dfsg-1 [153 kB]
157s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 gtk-update-icon-cache amd64 4.20.3+ds-3 [54.9 kB]
157s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 hicolor-icon-theme all 0.18-2build1 [13.2 kB]
157s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 adwaita-icon-theme all 49.0-1 [581 kB]
158s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 at-spi2-common all 2.59.0-1 [9774 B]
158s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
158s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
158s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
158s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
158s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
158s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
158s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libdconf1 amd64 0.49.0-4 [40.5 kB]
158s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-service amd64 0.49.0-4 [27.7 kB]
158s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-gsettings-backend amd64 0.49.0-4 [22.2 kB]
158s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
158s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
158s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
158s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
158s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
158s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
158s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.5.0~RC2-3 [171 kB]
158s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB]
158s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB]
158s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB]
158s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB]
158s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB]
158s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB]
158s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB]
158s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB]
158s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB]
158s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
158s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
159s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
159s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
159s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
159s Get:53 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-dev-bin amd64 2.42-2ubuntu5 [23.3 kB]
159s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.18.0-9.9 [1860 kB]
159s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
159s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
159s Get:57 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6-dev amd64 2.42-2ubuntu5 [2206 kB]
159s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
159s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
160s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
160s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
160s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
160s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
160s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libann-cctbx0 amd64 1.1.2+doc-9build2 [33.1 kB]
160s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 libann-cctbx-dev amd64 1.1.2+doc-9build2 [46.0 kB]
160s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4build3 [46.3 kB]
160s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libasound2-data all 1.2.15.3-1ubuntu1 [21.4 kB]
160s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libasound2t64 amd64 1.2.15.3-1ubuntu1 [418 kB]
160s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libasyncns0 amd64 0.8-7 [12.4 kB]
160s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk1.0-0t64 amd64 2.59.0-1 [57.1 kB]
160s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB]
160s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libatspi2.0-0t64 amd64 2.59.0-1 [85.7 kB]
160s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk-bridge2.0-0t64 amd64 2.59.0-1 [67.6 kB]
160s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common-data amd64 0.8-17ubuntu2 [31.5 kB]
160s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common3 amd64 0.8-17ubuntu2 [23.7 kB]
160s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-client3 amd64 0.8-17ubuntu2 [27.3 kB]
160s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.88-dev amd64 1.88.0-1.4ubuntu3 [11.3 MB]
160s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-container1.88.0 amd64 1.88.0-1.4ubuntu3 [265 kB]
160s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-container1.88-dev amd64 1.88.0-1.4ubuntu3 [269 kB]
160s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-graph1.88.0 amd64 1.88.0-1.4ubuntu3 [369 kB]
160s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-regex1.88.0 amd64 1.88.0-1.4ubuntu3 [347 kB]
160s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
160s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-regex1.88-dev amd64 1.88.0-1.4ubuntu3 [360 kB]
160s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-serialization1.88.0 amd64 1.88.0-1.4ubuntu3 [347 kB]
160s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-serialization1.88-dev amd64 1.88.0-1.4ubuntu3 [388 kB]
160s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-test1.88.0 amd64 1.88.0-1.4ubuntu3 [462 kB]
160s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-test1.88-dev amd64 1.88.0-1.4ubuntu3 [570 kB]
160s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-graph1.88-dev amd64 1.88.0-1.4ubuntu3 [400 kB]
160s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-python1.88.0 amd64 1.88.0-1.4ubuntu3 [360 kB]
160s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-numpy1.88.0 amd64 1.88.0-1.4ubuntu3 [248 kB]
160s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libexpat1-dev amd64 2.7.4-1 [145 kB]
160s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
160s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13-dev amd64 3.13.11-1 [5798 kB]
161s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3-dev amd64 3.13.9-3 [11.2 kB]
161s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-dev amd64 3.13.11-1 [508 kB]
161s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dev amd64 3.13.9-3 [26.6 kB]
161s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-python1.88-dev amd64 1.88.0-1.4ubuntu3 [382 kB]
161s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-python-dev amd64 1.88.0.0ubuntu3 [4672 B]
161s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-thread1.88.0 amd64 1.88.0-1.4ubuntu3 [273 kB]
161s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-timer1.88.0 amd64 1.88.0-1.4ubuntu3 [243 kB]
161s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
161s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
161s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
161s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
161s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
161s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo-gobject2 amd64 1.18.4-3 [127 kB]
161s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB]
161s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB]
161s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcbf1t64 amd64 0.9.7+dfsg1-5.1 [362 kB]
161s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4-data all 8.0.0-5build1 [65.4 kB]
161s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4c0t64 amd64 8.0.0-5build1 [95.9 kB]
161s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmmdb2-0 amd64 2.0.22-1build1 [369 kB]
161s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4f0t64 amd64 8.0.0-5build1 [221 kB]
161s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4-dev amd64 8.0.0-5build1 [42.4 kB]
161s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcctbx0 amd64 2025.12+ds2+~3.26.0+ds1-3 [2009 kB]
161s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcctbx-dev amd64 2025.12+ds2+~3.26.0+ds1-3 [1197 kB]
161s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB]
161s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolord2 amd64 1.4.8-2build1 [149 kB]
161s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libcups2t64 amd64 2.4.16-1ubuntu1 [273 kB]
161s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
161s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-client0 amd64 1.24.0-2 [28.5 kB]
161s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libdecor-0-0 amd64 0.2.5-1 [16.5 kB]
161s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdouble-conversion3 amd64 3.4.0-1 [41.4 kB]
161s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libpciaccess0 amd64 0.18.1-1ubuntu3 [19.0 kB]
161s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-intel1 amd64 2.4.131-1 [66.7 kB]
161s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libx11-xcb1 amd64 2:1.8.12-1build1 [8044 B]
161s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-dri3-0 amd64 1.17.0-2ubuntu1 [7540 B]
161s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-present0 amd64 1.17.0-2ubuntu1 [6112 B]
161s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-randr0 amd64 1.17.0-2ubuntu1 [17.9 kB]
161s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-sync1 amd64 1.17.0-2ubuntu1 [9348 B]
161s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xfixes0 amd64 1.17.0-2ubuntu1 [10.2 kB]
161s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libxshmfence1 amd64 1.3.3-1build1 [5284 B]
161s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 mesa-libgallium amd64 25.3.3-1ubuntu1 [11.1 MB]
161s Get:134 http://ftpmaster.internal/ubuntu resolute/main amd64 libgbm1 amd64 25.3.3-1ubuntu1 [34.0 kB]
161s Get:135 http://ftpmaster.internal/ubuntu resolute/main amd64 libegl-mesa0 amd64 25.3.3-1ubuntu1 [117 kB]
161s Get:136 http://ftpmaster.internal/ubuntu resolute/main amd64 libepoxy0 amd64 1.5.10-2build1 [226 kB]
161s Get:137 http://ftpmaster.internal/ubuntu resolute/main amd64 libogg0 amd64 1.3.6-2 [23.4 kB]
161s Get:138 http://ftpmaster.internal/ubuntu resolute/main amd64 libflac14 amd64 1.5.0+ds-5 [168 kB]
161s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 libvulkan1 amd64 1.4.335.0-1 [158 kB]
161s Get:140 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1-mesa-dri amd64 25.3.3-1ubuntu1 [37.5 kB]
161s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 libglvnd0 amd64 1.7.0-3 [64.1 kB]
161s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-glx0 amd64 1.17.0-2ubuntu1 [24.7 kB]
161s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libxxf86vm1 amd64 1:1.1.4-2 [10.6 kB]
161s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx-mesa0 amd64 25.3.3-1ubuntu1 [110 kB]
161s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx0 amd64 1.7.0-3 [38.9 kB]
161s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1 amd64 1.7.0-3 [98.3 kB]
161s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglew2.2 amd64 2.2.0-4build2 [181 kB]
161s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglut3.12 amd64 3.4.0-6 [101 kB]
161s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
161s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
161s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
161s Get:152 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
161s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
161s Get:154 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
161s Get:155 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
161s Get:156 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-cursor0 amd64 1.24.0-2 [10.8 kB]
161s Get:157 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-egl1 amd64 1.24.0-2 [6248 B]
161s Get:158 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcomposite1 amd64 1:0.4.6-1build1 [6664 B]
161s Get:159 http://ftpmaster.internal/ubuntu resolute/main amd64 libxfixes3 amd64 1:6.0.0-2build2 [11.1 kB]
161s Get:160 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcursor1 amd64 1:1.2.3-1build1 [22.1 kB]
161s Get:161 http://ftpmaster.internal/ubuntu resolute/main amd64 libxdamage1 amd64 1:1.1.7-1 [6582 B]
161s Get:162 http://ftpmaster.internal/ubuntu resolute/main amd64 libxinerama1 amd64 2:1.1.4-3build2 [6472 B]
161s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrandr2 amd64 2:1.5.4-1build1 [19.6 kB]
161s Get:164 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB]
161s Get:165 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-0t64 amd64 3.24.50-1ubuntu2 [3263 kB]
161s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB]
161s Get:167 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
161s Get:168 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
161s Get:169 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
161s Get:170 http://ftpmaster.internal/ubuntu resolute/main amd64 libwacom-common all 2.16.1-1 [113 kB]
161s Get:171 http://ftpmaster.internal/ubuntu resolute/main amd64 libwacom9 amd64 2.16.1-1 [28.3 kB]
161s Get:172 http://ftpmaster.internal/ubuntu resolute/main amd64 libinput-bin amd64 1.30.1-1 [24.7 kB]
161s Get:173 http://ftpmaster.internal/ubuntu resolute/main amd64 libmtdev1t64 amd64 1.1.7-1build1 [15.2 kB]
161s Get:174 http://ftpmaster.internal/ubuntu resolute/main amd64 libinput10 amd64 1.30.1-1 [160 kB]
161s Get:175 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
161s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4build1 [7490 B]
161s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmd4c0 amd64 0.5.2-2build1 [43.7 kB]
161s Get:178 http://ftpmaster.internal/ubuntu resolute/main amd64 libmp3lame0 amd64 3.100-6build2 [146 kB]
161s Get:179 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpg123-0t64 amd64 1.33.3-2 [176 kB]
161s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB]
161s Get:181 http://ftpmaster.internal/ubuntu resolute/main amd64 libnotify4 amd64 0.8.8-1 [28.6 kB]
161s Get:182 http://ftpmaster.internal/ubuntu resolute/main amd64 libopus0 amd64 1.6.1-1 [3564 kB]
161s Get:183 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
161s Get:184 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
161s Get:185 http://ftpmaster.internal/ubuntu resolute/main amd64 libvorbis0a amd64 1.3.7-3build1 [103 kB]
161s Get:186 http://ftpmaster.internal/ubuntu resolute/main amd64 libvorbisenc2 amd64 1.3.7-3build1 [79.8 kB]
161s Get:187 http://ftpmaster.internal/ubuntu resolute/main amd64 libsndfile1 amd64 1.2.2-4 [219 kB]
161s Get:188 http://ftpmaster.internal/ubuntu resolute/main amd64 libpulse0 amd64 1:17.0+dfsg1-2ubuntu4 [293 kB]
161s Get:189 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
161s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB]
161s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5core5t64 amd64 5.15.18+dfsg-1ubuntu1 [2066 kB]
162s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5dbus5t64 amd64 5.15.18+dfsg-1ubuntu1 [222 kB]
162s Get:193 http://ftpmaster.internal/ubuntu resolute/main amd64 libegl1 amd64 1.7.0-3 [29.7 kB]
162s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5network5t64 amd64 5.15.18+dfsg-1ubuntu1 [731 kB]
162s Get:195 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
162s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-icccm4 amd64 0.4.2-1build1 [11.0 kB]
162s Get:197 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-util1 amd64 0.4.1-1build1 [11.1 kB]
162s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-image0 amd64 0.4.0-2build2 [11.0 kB]
162s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-keysyms1 amd64 0.4.1-1build1 [8704 B]
162s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-render-util0 amd64 0.3.10-1build1 [10.4 kB]
162s Get:201 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shape0 amd64 1.17.0-2ubuntu1 [6172 B]
162s Get:202 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xinerama0 amd64 1.17.0-2ubuntu1 [5542 B]
162s Get:203 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xinput0 amd64 1.17.0-2ubuntu1 [32.5 kB]
162s Get:204 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xkb1 amd64 1.17.0-2ubuntu1 [32.7 kB]
162s Get:205 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon-x11-0 amd64 1.12.3-1 [15.0 kB]
162s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5gui5t64 amd64 5.15.18+dfsg-1ubuntu1 [3819 kB]
162s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5widgets5t64 amd64 5.15.18+dfsg-1ubuntu1 [2584 kB]
162s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5xml5t64 amd64 5.15.18+dfsg-1ubuntu1 [124 kB]
162s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5designer5 amd64 5.15.18-1 [2837 kB]
162s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5sql5t64 amd64 5.15.18+dfsg-1ubuntu1 [123 kB]
162s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5help5 amd64 5.15.18-1 [163 kB]
162s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5opengl5t64 amd64 5.15.18+dfsg-1ubuntu1 [150 kB]
162s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5printsupport5t64 amd64 5.15.18+dfsg-1ubuntu1 [209 kB]
162s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5test5t64 amd64 5.15.18+dfsg-1ubuntu1 [149 kB]
162s Get:215 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1build1 [15.5 kB]
162s Get:216 http://ftpmaster.internal/ubuntu resolute/main amd64 libsamplerate0 amd64 0.2.2-4build2 [1343 kB]
162s Get:217 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
162s Get:218 http://ftpmaster.internal/ubuntu resolute/main amd64 libsdl2-classic amd64 2.32.10+dfsg-6 [710 kB]
162s Get:219 http://ftpmaster.internal/ubuntu resolute/main amd64 libsdl2-2.0-0 amd64 2.32.10+dfsg-6 [14.0 kB]
162s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 libssm2 amd64 1.4.0-2build2 [88.7 kB]
162s Get:221 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
162s Get:222 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
162s Get:223 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
162s Get:224 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1build1 [12.8 kB]
162s Get:225 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1build1 [26.4 kB]
162s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxbase3.2-1t64 amd64 3.2.9+dfsg-1 [931 kB]
162s Get:227 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtst6 amd64 2:1.2.5-1build1 [13.1 kB]
162s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxgtk3.2-1t64 amd64 3.2.9+dfsg-1 [4703 kB]
162s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxgtk-gl3.2-1t64 amd64 3.2.9+dfsg-1 [53.1 kB]
162s Get:230 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB]
162s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3build1 [114 kB]
162s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 pymol-data all 3.1.0+dfsg-1build2 [1392 kB]
162s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB]
162s Get:234 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB]
162s Get:235 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.9-3 [890 B]
162s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB]
162s Get:237 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-legacy-cgi all 2.6.4-2 [17.2 kB]
162s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pycbf amd64 0.9.7+dfsg1-5.1 [181 kB]
162s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.15.1-4 [1586 kB]
162s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.15.1-4 [11.3 kB]
162s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-hdf5plugin all 5.1.0-1 [23.3 kB]
162s Get:242 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB]
162s Get:243 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB]
162s Get:244 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.11-1 [108 kB]
162s Get:245 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.2-1 [109 kB]
162s Get:246 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-3 [11.2 kB]
162s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B]
162s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.3-1 [255 kB]
162s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B]
163s Get:250 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB]
163s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.5+dfsg-1 [27.7 kB]
163s Get:252 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB]
163s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.16.3-4 [19.0 MB]
163s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB]
163s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB]
163s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB]
163s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB]
163s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1build1 [9543 kB]
163s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.61.1-3 [1742 kB]
163s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB]
163s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB]
163s Get:262 http://ftpmaster.internal/ubuntu resolute/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1013 kB]
163s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mrcfile all 1.5.4-2 [116 kB]
163s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-natsort all 8.4.0-2 [34.2 kB]
163s Get:265 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-flexcache all 0.3-3 [13.6 kB]
163s Get:266 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-flexparser all 0.4-2 [44.0 kB]
163s Get:267 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.5.1-1 [17.1 kB]
163s Get:268 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pint all 0.25.2-2 [208 kB]
163s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nxmx all 0.0.4-1build1 [16.6 kB]
163s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ordered-set all 4.1.0-1build1 [9668 B]
163s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-procrunner all 2.3.3-2 [12.0 kB]
163s Get:272 http://ftpmaster.internal/ubuntu resolute/main amd64 libgles2 amd64 1.7.0-3 [17.5 kB]
163s Get:273 http://ftpmaster.internal/ubuntu resolute/main amd64 libopengl0 amd64 1.7.0-3 [32.8 kB]
163s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglu1-mesa amd64 9.0.2-1.1build2 [159 kB]
163s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-opengl all 3.1.10+dfsg-1 [633 kB]
163s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5.sip amd64 12.17.2-1 [81.1 kB]
164s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-3build2 [2737 kB]
164s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-3build2 [127 kB]
164s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pymol amd64 3.1.0+dfsg-1build2 [7762 kB]
164s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-tqdm all 4.67.1-7 [93.3 kB]
164s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-wxgtk4.0 amd64 4.2.4+dfsg-1 [11.1 MB]
164s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cctbx amd64 2025.12+ds2+~3.26.0+ds1-3 [33.5 MB]
164s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-2 [6962 B]
164s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-2 [21.1 kB]
164s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 9.0.2-2 [277 kB]
165s Fetched 314 MB in 7s (42.5 MB/s)
165s Selecting previously unselected package fonts-lato.
165s (Reading database ... 
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(Reading database ... 83962 files and directories currently installed.)
165s Preparing to unpack .../000-fonts-lato_2.015-1build1_all.deb ...
165s Unpacking fonts-lato (2.015-1build1) ...
165s Selecting previously unselected package python3-numpy-dev:amd64.
165s Preparing to unpack .../001-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ...
165s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ...
165s Selecting previously unselected package libblas3:amd64.
165s Preparing to unpack .../002-libblas3_3.12.1-7ubuntu1_amd64.deb ...
165s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
165s Selecting previously unselected package libgfortran5:amd64.
165s Preparing to unpack .../003-libgfortran5_15.2.0-12ubuntu1_amd64.deb ...
165s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ...
165s Selecting previously unselected package liblapack3:amd64.
165s Preparing to unpack .../004-liblapack3_3.12.1-7ubuntu1_amd64.deb ...
165s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ...
165s Selecting previously unselected package python3-numpy.
165s Preparing to unpack .../005-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ...
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169s Selecting previously unselected package libcairo2:amd64.
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169s Selecting previously unselected package libcairo-gobject2:amd64.
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169s Selecting previously unselected package libsz2:amd64.
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169s Selecting previously unselected package libhdf5-310:amd64.
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169s Selecting previously unselected package libcbf1t64:amd64.
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169s Selecting previously unselected package libccp4-data.
169s Preparing to unpack .../109-libccp4-data_8.0.0-5build1_all.deb ...
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169s Selecting previously unselected package libccp4c0t64:amd64.
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169s Selecting previously unselected package libmmdb2-0:amd64.
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169s Selecting previously unselected package libccp4f0t64:amd64.
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169s Selecting previously unselected package libcctbx0.
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169s Selecting previously unselected package liblcms2-2:amd64.
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169s Selecting previously unselected package libcolord2:amd64.
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169s Selecting previously unselected package libcups2t64:amd64.
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169s Selecting previously unselected package libdatrie1:amd64.
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169s Selecting previously unselected package libwayland-client0:amd64.
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169s Selecting previously unselected package libdecor-0-0:amd64.
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169s Selecting previously unselected package libdouble-conversion3:amd64.
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169s Selecting previously unselected package libpciaccess0:amd64.
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169s Selecting previously unselected package libdrm-intel1:amd64.
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169s Unpacking libdrm-intel1:amd64 (2.4.131-1) ...
169s Selecting previously unselected package libx11-xcb1:amd64.
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169s Selecting previously unselected package libxcb-dri3-0:amd64.
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169s Selecting previously unselected package libxcb-randr0:amd64.
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169s Selecting previously unselected package libxcb-sync1:amd64.
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169s Selecting previously unselected package libxcb-xfixes0:amd64.
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169s Selecting previously unselected package libxshmfence1:amd64.
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169s Selecting previously unselected package mesa-libgallium:amd64.
169s Preparing to unpack .../132-mesa-libgallium_25.3.3-1ubuntu1_amd64.deb ...
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170s Selecting previously unselected package libgbm1:amd64.
170s Preparing to unpack .../133-libgbm1_25.3.3-1ubuntu1_amd64.deb ...
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170s Selecting previously unselected package libegl-mesa0:amd64.
170s Preparing to unpack .../134-libegl-mesa0_25.3.3-1ubuntu1_amd64.deb ...
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170s Selecting previously unselected package libepoxy0:amd64.
170s Preparing to unpack .../135-libepoxy0_1.5.10-2build1_amd64.deb ...
170s Unpacking libepoxy0:amd64 (1.5.10-2build1) ...
170s Selecting previously unselected package libogg0:amd64.
170s Preparing to unpack .../136-libogg0_1.3.6-2_amd64.deb ...
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170s Selecting previously unselected package libflac14:amd64.
170s Preparing to unpack .../137-libflac14_1.5.0+ds-5_amd64.deb ...
170s Unpacking libflac14:amd64 (1.5.0+ds-5) ...
170s Selecting previously unselected package libvulkan1:amd64.
170s Preparing to unpack .../138-libvulkan1_1.4.335.0-1_amd64.deb ...
170s Unpacking libvulkan1:amd64 (1.4.335.0-1) ...
170s Selecting previously unselected package libgl1-mesa-dri:amd64.
170s Preparing to unpack .../139-libgl1-mesa-dri_25.3.3-1ubuntu1_amd64.deb ...
170s Unpacking libgl1-mesa-dri:amd64 (25.3.3-1ubuntu1) ...
170s Selecting previously unselected package libglvnd0:amd64.
170s Preparing to unpack .../140-libglvnd0_1.7.0-3_amd64.deb ...
170s Unpacking libglvnd0:amd64 (1.7.0-3) ...
170s Selecting previously unselected package libxcb-glx0:amd64.
170s Preparing to unpack .../141-libxcb-glx0_1.17.0-2ubuntu1_amd64.deb ...
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170s Selecting previously unselected package libxxf86vm1:amd64.
170s Preparing to unpack .../142-libxxf86vm1_1%3a1.1.4-2_amd64.deb ...
170s Unpacking libxxf86vm1:amd64 (1:1.1.4-2) ...
170s Selecting previously unselected package libglx-mesa0:amd64.
170s Preparing to unpack .../143-libglx-mesa0_25.3.3-1ubuntu1_amd64.deb ...
170s Unpacking libglx-mesa0:amd64 (25.3.3-1ubuntu1) ...
170s Selecting previously unselected package libglx0:amd64.
170s Preparing to unpack .../144-libglx0_1.7.0-3_amd64.deb ...
170s Unpacking libglx0:amd64 (1.7.0-3) ...
170s Selecting previously unselected package libgl1:amd64.
170s Preparing to unpack .../145-libgl1_1.7.0-3_amd64.deb ...
170s Unpacking libgl1:amd64 (1.7.0-3) ...
170s Selecting previously unselected package libglew2.2:amd64.
170s Preparing to unpack .../146-libglew2.2_2.2.0-4build2_amd64.deb ...
170s Unpacking libglew2.2:amd64 (2.2.0-4build2) ...
170s Selecting previously unselected package libglut3.12:amd64.
170s Preparing to unpack .../147-libglut3.12_3.4.0-6_amd64.deb ...
170s Unpacking libglut3.12:amd64 (3.4.0-6) ...
170s Selecting previously unselected package libgraphite2-3:amd64.
170s Preparing to unpack .../148-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ...
170s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
170s Selecting previously unselected package libharfbuzz0b:amd64.
170s Preparing to unpack .../149-libharfbuzz0b_12.3.2-1_amd64.deb ...
170s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ...
170s Selecting previously unselected package libthai-data.
170s Preparing to unpack .../150-libthai-data_0.1.30-1_all.deb ...
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170s Selecting previously unselected package libthai0:amd64.
170s Preparing to unpack .../151-libthai0_0.1.30-1_amd64.deb ...
170s Unpacking libthai0:amd64 (0.1.30-1) ...
170s Selecting previously unselected package libpango-1.0-0:amd64.
170s Preparing to unpack .../152-libpango-1.0-0_1.57.0-1_amd64.deb ...
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170s Selecting previously unselected package libpangoft2-1.0-0:amd64.
170s Preparing to unpack .../153-libpangoft2-1.0-0_1.57.0-1_amd64.deb ...
170s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ...
170s Selecting previously unselected package libpangocairo-1.0-0:amd64.
170s Preparing to unpack .../154-libpangocairo-1.0-0_1.57.0-1_amd64.deb ...
170s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ...
170s Selecting previously unselected package libwayland-cursor0:amd64.
170s Preparing to unpack .../155-libwayland-cursor0_1.24.0-2_amd64.deb ...
170s Unpacking libwayland-cursor0:amd64 (1.24.0-2) ...
170s Selecting previously unselected package libwayland-egl1:amd64.
170s Preparing to unpack .../156-libwayland-egl1_1.24.0-2_amd64.deb ...
170s Unpacking libwayland-egl1:amd64 (1.24.0-2) ...
170s Selecting previously unselected package libxcomposite1:amd64.
170s Preparing to unpack .../157-libxcomposite1_1%3a0.4.6-1build1_amd64.deb ...
170s Unpacking libxcomposite1:amd64 (1:0.4.6-1build1) ...
170s Selecting previously unselected package libxfixes3:amd64.
170s Preparing to unpack .../158-libxfixes3_1%3a6.0.0-2build2_amd64.deb ...
170s Unpacking libxfixes3:amd64 (1:6.0.0-2build2) ...
170s Selecting previously unselected package libxcursor1:amd64.
170s Preparing to unpack .../159-libxcursor1_1%3a1.2.3-1build1_amd64.deb ...
170s Unpacking libxcursor1:amd64 (1:1.2.3-1build1) ...
170s Selecting previously unselected package libxdamage1:amd64.
170s Preparing to unpack .../160-libxdamage1_1%3a1.1.7-1_amd64.deb ...
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170s Selecting previously unselected package libxinerama1:amd64.
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170s Unpacking libxinerama1:amd64 (2:1.1.4-3build2) ...
170s Selecting previously unselected package libxrandr2:amd64.
170s Preparing to unpack .../162-libxrandr2_2%3a1.5.4-1build1_amd64.deb ...
170s Unpacking libxrandr2:amd64 (2:1.5.4-1build1) ...
170s Selecting previously unselected package libgtk-3-common.
170s Preparing to unpack .../163-libgtk-3-common_3.24.50-1ubuntu2_all.deb ...
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170s Selecting previously unselected package libgtk-3-0t64:amd64.
170s Preparing to unpack .../164-libgtk-3-0t64_3.24.50-1ubuntu2_amd64.deb ...
170s Unpacking libgtk-3-0t64:amd64 (3.24.50-1ubuntu2) ...
170s Selecting previously unselected package libhdf5-hl-310:amd64.
170s Preparing to unpack .../165-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ...
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170s Selecting previously unselected package x11-common.
170s Preparing to unpack .../166-x11-common_1%3a7.7+24ubuntu1_all.deb ...
170s Unpacking x11-common (1:7.7+24ubuntu1) ...
170s Selecting previously unselected package libice6:amd64.
170s Preparing to unpack .../167-libice6_2%3a1.1.1-1build1_amd64.deb ...
170s Unpacking libice6:amd64 (2:1.1.1-1build1) ...
170s Selecting previously unselected package libimagequant0:amd64.
170s Preparing to unpack .../168-libimagequant0_2.18.0-1build1_amd64.deb ...
170s Unpacking libimagequant0:amd64 (2.18.0-1build1) ...
170s Selecting previously unselected package libwacom-common.
170s Preparing to unpack .../169-libwacom-common_2.16.1-1_all.deb ...
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170s Selecting previously unselected package libwacom9:amd64.
170s Preparing to unpack .../170-libwacom9_2.16.1-1_amd64.deb ...
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170s Selecting previously unselected package libinput-bin.
170s Preparing to unpack .../171-libinput-bin_1.30.1-1_amd64.deb ...
170s Unpacking libinput-bin (1.30.1-1) ...
170s Selecting previously unselected package libmtdev1t64:amd64.
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170s Selecting previously unselected package libinput10:amd64.
170s Preparing to unpack .../173-libinput10_1.30.1-1_amd64.deb ...
170s Unpacking libinput10:amd64 (1.30.1-1) ...
170s Selecting previously unselected package libjs-jquery.
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170s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ...
170s Selecting previously unselected package liblzf1:amd64.
170s Preparing to unpack .../175-liblzf1_3.6-4build1_amd64.deb ...
170s Unpacking liblzf1:amd64 (3.6-4build1) ...
170s Selecting previously unselected package libmd4c0:amd64.
170s Preparing to unpack .../176-libmd4c0_0.5.2-2build1_amd64.deb ...
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170s Selecting previously unselected package libmp3lame0:amd64.
170s Preparing to unpack .../177-libmp3lame0_3.100-6build2_amd64.deb ...
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170s Selecting previously unselected package libmpg123-0t64:amd64.
170s Preparing to unpack .../178-libmpg123-0t64_1.33.3-2_amd64.deb ...
170s Unpacking libmpg123-0t64:amd64 (1.33.3-2) ...
170s Selecting previously unselected package libnetcdf22:amd64.
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170s Selecting previously unselected package libnotify4:amd64.
170s Preparing to unpack .../180-libnotify4_0.8.8-1_amd64.deb ...
170s Unpacking libnotify4:amd64 (0.8.8-1) ...
170s Selecting previously unselected package libopus0:amd64.
170s Preparing to unpack .../181-libopus0_1.6.1-1_amd64.deb ...
170s Unpacking libopus0:amd64 (1.6.1-1) ...
170s Selecting previously unselected package libpcre2-16-0:amd64.
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170s Selecting previously unselected package libpcre2-32-0:amd64.
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170s Unpacking libpcre2-32-0:amd64 (10.46-1) ...
170s Selecting previously unselected package libvorbis0a:amd64.
170s Preparing to unpack .../184-libvorbis0a_1.3.7-3build1_amd64.deb ...
170s Unpacking libvorbis0a:amd64 (1.3.7-3build1) ...
170s Selecting previously unselected package libvorbisenc2:amd64.
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170s Unpacking libvorbisenc2:amd64 (1.3.7-3build1) ...
170s Selecting previously unselected package libsndfile1:amd64.
170s Preparing to unpack .../186-libsndfile1_1.2.2-4_amd64.deb ...
170s Unpacking libsndfile1:amd64 (1.2.2-4) ...
170s Selecting previously unselected package libpulse0:amd64.
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170s Selecting previously unselected package libpython3.14-stdlib:amd64.
170s Preparing to unpack .../188-libpython3.14-stdlib_3.14.2-1_amd64.deb ...
170s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ...
170s Selecting previously unselected package libqhull-r8.0:amd64.
170s Preparing to unpack .../189-libqhull-r8.0_2020.2-8_amd64.deb ...
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170s Selecting previously unselected package libqt5core5t64:amd64.
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171s Unpacking libqt5core5t64:amd64 (5.15.18+dfsg-1ubuntu1) ...
171s Selecting previously unselected package libqt5dbus5t64:amd64.
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171s Unpacking libqt5dbus5t64:amd64 (5.15.18+dfsg-1ubuntu1) ...
171s Selecting previously unselected package libegl1:amd64.
171s Preparing to unpack .../192-libegl1_1.7.0-3_amd64.deb ...
171s Unpacking libegl1:amd64 (1.7.0-3) ...
171s Selecting previously unselected package libqt5network5t64:amd64.
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171s Unpacking libqt5network5t64:amd64 (5.15.18+dfsg-1ubuntu1) ...
171s Selecting previously unselected package libsm6:amd64.
171s Preparing to unpack .../194-libsm6_2%3a1.2.6-1build1_amd64.deb ...
171s Unpacking libsm6:amd64 (2:1.2.6-1build1) ...
171s Selecting previously unselected package libxcb-icccm4:amd64.
171s Preparing to unpack .../195-libxcb-icccm4_0.4.2-1build1_amd64.deb ...
171s Unpacking libxcb-icccm4:amd64 (0.4.2-1build1) ...
171s Selecting previously unselected package libxcb-util1:amd64.
171s Preparing to unpack .../196-libxcb-util1_0.4.1-1build1_amd64.deb ...
171s Unpacking libxcb-util1:amd64 (0.4.1-1build1) ...
171s Selecting previously unselected package libxcb-image0:amd64.
171s Preparing to unpack .../197-libxcb-image0_0.4.0-2build2_amd64.deb ...
171s Unpacking libxcb-image0:amd64 (0.4.0-2build2) ...
171s Selecting previously unselected package libxcb-keysyms1:amd64.
171s Preparing to unpack .../198-libxcb-keysyms1_0.4.1-1build1_amd64.deb ...
171s Unpacking libxcb-keysyms1:amd64 (0.4.1-1build1) ...
171s Selecting previously unselected package libxcb-render-util0:amd64.
171s Preparing to unpack .../199-libxcb-render-util0_0.3.10-1build1_amd64.deb ...
171s Unpacking libxcb-render-util0:amd64 (0.3.10-1build1) ...
171s Selecting previously unselected package libxcb-shape0:amd64.
171s Preparing to unpack .../200-libxcb-shape0_1.17.0-2ubuntu1_amd64.deb ...
171s Unpacking libxcb-shape0:amd64 (1.17.0-2ubuntu1) ...
171s Selecting previously unselected package libxcb-xinerama0:amd64.
171s Preparing to unpack .../201-libxcb-xinerama0_1.17.0-2ubuntu1_amd64.deb ...
171s Unpacking libxcb-xinerama0:amd64 (1.17.0-2ubuntu1) ...
171s Selecting previously unselected package libxcb-xinput0:amd64.
171s Preparing to unpack .../202-libxcb-xinput0_1.17.0-2ubuntu1_amd64.deb ...
171s Unpacking libxcb-xinput0:amd64 (1.17.0-2ubuntu1) ...
171s Selecting previously unselected package libxcb-xkb1:amd64.
171s Preparing to unpack .../203-libxcb-xkb1_1.17.0-2ubuntu1_amd64.deb ...
171s Unpacking libxcb-xkb1:amd64 (1.17.0-2ubuntu1) ...
171s Selecting previously unselected package libxkbcommon-x11-0:amd64.
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171s Selecting previously unselected package libqt5gui5t64:amd64.
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171s Selecting previously unselected package libqt5xml5t64:amd64.
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171s Selecting previously unselected package libqt5designer5:amd64.
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171s Selecting previously unselected package libqt5sql5t64:amd64.
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171s Selecting previously unselected package libqt5help5:amd64.
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171s Selecting previously unselected package libqt5opengl5t64:amd64.
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171s Selecting previously unselected package libqt5printsupport5t64:amd64.
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171s Selecting previously unselected package libraqm0:amd64.
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171s Selecting previously unselected package libsamplerate0:amd64.
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171s Selecting previously unselected package libxss1:amd64.
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171s Selecting previously unselected package libsdl2-classic:amd64.
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171s Selecting previously unselected package libsdl2-2.0-0:amd64.
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171s Selecting previously unselected package libssm2:amd64.
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171s Selecting previously unselected package libtcl8.6:amd64.
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171s Selecting previously unselected package libxft2:amd64.
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171s Selecting previously unselected package libtk8.6:amd64.
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171s Selecting previously unselected package libwebpdemux2:amd64.
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171s Selecting previously unselected package libwebpmux3:amd64.
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171s Selecting previously unselected package libwxbase3.2-1t64:amd64.
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171s Selecting previously unselected package libxtst6:amd64.
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171s Selecting previously unselected package libwxgtk3.2-1t64:amd64.
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171s Selecting previously unselected package libwxgtk-gl3.2-1t64:amd64.
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171s Unpacking libwxgtk-gl3.2-1t64:amd64 (3.2.9+dfsg-1) ...
171s Selecting previously unselected package libxslt1.1:amd64.
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171s Selecting previously unselected package libzopfli1.
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171s Selecting previously unselected package pymol-data.
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171s Selecting previously unselected package python-matplotlib-data.
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171s Selecting previously unselected package python3.14.
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171s Selecting previously unselected package python3-all.
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171s Selecting previously unselected package python3-brotli.
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171s Selecting previously unselected package python3-legacy-cgi.
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171s Selecting previously unselected package python3-pycbf.
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171s Selecting previously unselected package python3-h5py-serial.
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172s Selecting previously unselected package python3-h5py.
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172s Selecting previously unselected package python3-hdf5plugin.
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172s Selecting previously unselected package libopenjp2-7:amd64.
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172s Selecting previously unselected package python3-pil:amd64.
172s Preparing to unpack .../242-python3-pil_12.0.0-1ubuntu1_amd64.deb ...
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172s Selecting previously unselected package python3.13-tk.
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172s Selecting previously unselected package python3-tk.
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172s Selecting previously unselected package python3-pil.imagetk:amd64.
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172s Selecting previously unselected package python3-contourpy.
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172s Selecting previously unselected package python3-cycler.
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172s Selecting previously unselected package python3-lxml:amd64.
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172s Selecting previously unselected package python3-lz4.
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172s Selecting previously unselected package python3-decorator.
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172s Selecting previously unselected package python3-scipy.
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172s Selecting previously unselected package python3-mpmath.
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172s Selecting previously unselected package python3-sympy.
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172s Selecting previously unselected package python3-ufolib2.
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172s Selecting previously unselected package python3-zopfli.
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172s Selecting previously unselected package unicode-data.
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172s Selecting previously unselected package python3-fonttools.
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172s Selecting previously unselected package python3-kiwisolver.
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172s Selecting previously unselected package python3-matplotlib.
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174s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
174s Setting up libxcb-dri3-0:amd64 (1.17.0-2ubuntu1) ...
174s Setting up liblcms2-2:amd64 (2.17-1) ...
174s Setting up python3-iniconfig (2.1.0-2) ...
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175s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ...
175s Setting up libx11-xcb1:amd64 (2:1.8.12-1build1) ...
175s Setting up libpciaccess0:amd64 (0.18.1-1ubuntu3) ...
175s Setting up libdouble-conversion3:amd64 (3.4.0-1) ...
175s Setting up libboost-python1.88.0 (1.88.0-1.4ubuntu3) ...
175s Setting up fonts-lato (2.015-1build1) ...
175s Setting up libxdamage1:amd64 (1:1.1.7-1) ...
175s Setting up libxcb-xfixes0:amd64 (1.17.0-2ubuntu1) ...
175s Setting up libogg0:amd64 (1.3.6-2) ...
175s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ...
175s Setting up libantlr3c-3.4-0:amd64 (3.4+dfsg-4build3) ...
175s Setting up hicolor-icon-theme (0.18-2build1) ...
175s Setting up libxi6:amd64 (2:1.8.2-2) ...
175s Setting up libxcb-xinput0:amd64 (1.17.0-2ubuntu1) ...
175s Setting up libxrender1:amd64 (1:0.9.12-1) ...
175s Setting up libdatrie1:amd64 (0.2.14-1) ...
175s Setting up libmmdb2-0:amd64 (2.0.22-1build1) ...
175s Setting up libboost-regex1.88.0:amd64 (1.88.0-1.4ubuntu3) ...
175s Setting up python3-lz4 (4.4.5+dfsg-1) ...
175s Setting up libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
175s Setting up libglvnd0:amd64 (1.7.0-3) ...
175s Setting up fonts-lyx (2.5.0~RC2-3) ...
175s Setting up libxcb-glx0:amd64 (1.17.0-2ubuntu1) ...
175s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ...
175s Setting up python3-tqdm (4.67.1-7) ...
175s Setting up libdrm-intel1:amd64 (2.4.131-1) ...
175s Setting up libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ...
175s Setting up libxcb-keysyms1:amd64 (0.4.1-1build1) ...
175s Setting up libxcb-shape0:amd64 (1.17.0-2ubuntu1) ...
175s Setting up x11-common (1:7.7+24ubuntu1) ...
175s Setting up libdeflate0:amd64 (1.23-2) ...
175s Setting up linux-libc-dev:amd64 (6.18.0-9.9) ...
175s Setting up libqhull-r8.0:amd64 (2020.2-8) ...
175s Setting up libxcb-render-util0:amd64 (0.3.10-1build1) ...
175s Setting up python3-ordered-set (4.1.0-1build1) ...
175s Setting up libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
175s Setting up libxcb-icccm4:amd64 (0.4.2-1build1) ...
175s Setting up libccp4-data (8.0.0-5build1) ...
175s Setting up libmpg123-0t64:amd64 (1.33.3-2) ...
175s Setting up libgomp1:amd64 (15.2.0-12ubuntu1) ...
175s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ...
175s Setting up libboost-serialization1.88.0:amd64 (1.88.0-1.4ubuntu3) ...
175s Setting up libpcre2-16-0:amd64 (10.46-1) ...
175s Setting up libcolord2:amd64 (1.4.8-2build1) ...
175s Setting up python3-platformdirs (4.5.1-1) ...
175s Setting up libopengl0:amd64 (1.7.0-3) ...
175s Setting up python3-natsort (8.4.0-2) ...
176s Setting up libxcb-util1:amd64 (0.4.1-1build1) ...
176s Setting up libxxf86vm1:amd64 (1:1.1.4-2) ...
176s Setting up libxcb-xkb1:amd64 (1.17.0-2ubuntu1) ...
176s Setting up libxcb-image0:amd64 (0.4.0-2build2) ...
176s Setting up libxcb-present0:amd64 (1.17.0-2ubuntu1) ...
176s Setting up libdconf1:amd64 (0.49.0-4) ...
176s Setting up unicode-data (16.0.0-1build1) ...
176s Setting up libasound2-data (1.2.15.3-1ubuntu1) ...
176s Setting up libqt5core5t64:amd64 (5.15.18+dfsg-1ubuntu1) ...
176s Setting up python3-decorator (5.2.1-2) ...
176s Setting up libpcre2-32-0:amd64 (10.46-1) ...
176s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ...
176s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
176s Setting up libboost-thread1.88.0:amd64 (1.88.0-1.4ubuntu3) ...
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178s Setting up python3-procrunner (2.3.3-2) ...
178s Setting up liblsan0:amd64 (15.2.0-12ubuntu1) ...
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178s Setting up libann-cctbx-dev (1.1.2+doc-9build2) ...
178s Setting up libwacom-common (2.16.1-1) ...
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185s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block
185s   return p.returncode
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185s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
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188s Setting up python3.14 (3.14.2-1) ...
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189s Setting up python3-mrcfile (1.5.4-2) ...
189s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
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189s Setting up libhdf5-hl-310:amd64 (1.14.6+repack-2) ...
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191s Regenerating fonts cache... done.
191s Setting up libxft2:amd64 (2.3.6-1build2) ...
191s Setting up libglx-mesa0:amd64 (25.3.3-1ubuntu1) ...
191s Setting up python3-scipy (1.16.3-4) ...
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196s Setting up libpango-1.0-0:amd64 (1.57.0-1) ...
196s Setting up libnetcdf22:amd64 (1:4.9.3-1build1) ...
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196s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
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197s Setting up libgtk-3-common (3.24.50-1ubuntu2) ...
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197s Setting up libcctbx0 (2025.12+ds2+~3.26.0+ds1-3) ...
197s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
197s Setting up python3.14-tk (3.14.2-1) ...
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197s Setting up libboost1.88-dev:amd64 (1.88.0-1.4ubuntu3) ...
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197s Setting up python3-opengl (3.1.10+dfsg-1) ...
199s Setting up gcc (4:15.2.0-4ubuntu1) ...
199s Setting up libqt5gui5t64:amd64 (5.15.18+dfsg-1ubuntu1) ...
199s Setting up python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ...
199s Setting up libboost-container1.88-dev:amd64 (1.88.0-1.4ubuntu3) ...
199s Setting up libpython3.13-dev:amd64 (3.13.11-1) ...
199s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
199s Setting up libsdl2-2.0-0:amd64 (2.32.10+dfsg-6) ...
199s Setting up g++-15 (15.2.0-12ubuntu1) ...
199s Setting up libboost-serialization1.88-dev:amd64 (1.88.0-1.4ubuntu3) ...
199s Setting up libboost-regex1.88-dev:amd64 (1.88.0-1.4ubuntu3) ...
199s Setting up libpython3-dev:amd64 (3.13.9-3) ...
199s Setting up libqt5widgets5t64:amd64 (5.15.18+dfsg-1ubuntu1) ...
199s Setting up libboost-test1.88-dev:amd64 (1.88.0-1.4ubuntu3) ...
199s Setting up python3.13-dev (3.13.11-1) ...
199s Setting up libqt5help5:amd64 (5.15.18-1) ...
199s Setting up python3-dev (3.13.9-3) ...
199s Setting up g++ (4:15.2.0-4ubuntu1) ...
199s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
199s Setting up libqt5opengl5t64:amd64 (5.15.18+dfsg-1ubuntu1) ...
199s Setting up libqt5printsupport5t64:amd64 (5.15.18+dfsg-1ubuntu1) ...
199s Setting up libboost-graph1.88-dev:amd64 (1.88.0-1.4ubuntu3) ...
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199s Setting up libboost-python1.88-dev (1.88.0-1.4ubuntu3) ...
199s Setting up python3-pyqt5 (5.15.11+dfsg-3build2) ...
199s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-3build2) ...
199s Setting up libboost-python-dev (1.88.0.0ubuntu3) ...
199s Setting up python3-pymol (3.1.0+dfsg-1build2) ...
200s Setting up libcctbx-dev (2025.12+ds2+~3.26.0+ds1-3) ...
200s Setting up python3-fonttools (4.61.1-3) ...
201s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ...
201s Setting up python3-matplotlib (3.10.7+dfsg1-1) ...
203s Processing triggers for libc-bin (2.42-2ubuntu5) ...
203s Processing triggers for systemd (259-1ubuntu3) ...
203s Processing triggers for man-db (2.13.1-1) ...
204s Processing triggers for libglib2.0-0t64:amd64 (2.86.3-4) ...
204s Setting up libgtk-3-0t64:amd64 (3.24.50-1ubuntu2) ...
204s Processing triggers for udev (259-1ubuntu3) ...
204s Setting up libwxgtk3.2-1t64:amd64 (3.2.9+dfsg-1) ...
204s Setting up libwxgtk-gl3.2-1t64:amd64 (3.2.9+dfsg-1) ...
204s Setting up python3-wxgtk4.0 (4.2.4+dfsg-1) ...
207s Setting up python3-cctbx (2025.12+ds2+~3.26.0+ds1-3) ...
215s /usr/lib/python3/dist-packages/cootbx/interactive_edit.py:48: SyntaxWarning: 'return' in a 'finally' block
215s   return new_text
216s /usr/lib/python3/dist-packages/libtbx/utils.py:2433: SyntaxWarning: 'return' in a 'finally' block
216s   return new_text
216s /usr/lib/python3/dist-packages/libtbx/utils.py:2472: SyntaxWarning: 'return' in a 'finally' block
216s   return new_text
287s Processing triggers for libc-bin (2.42-2ubuntu5) ...
287s autopkgtest [20:34:19]: test cctbx: [-----------------------
287s Testing cctbx with python3.14:
288s Running 553 tests on 2 processors:
288s   libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py"
288s   "/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy"
288s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/math/boost_python/tst_math.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_targets_fd.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_N_fold_rot.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_chemical_elements.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_henke.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_icsd_radii.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_covalent_radii.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_neutron.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_sasaki.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_tiny_pse.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_wavelengths.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_motif.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_math_module.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_coordination_sequences.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem_2.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_pickling.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_epsilon.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_hl.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/run_shelx76.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/observations/tst_observations.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_box.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_create_models_or_maps.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/merging/brehm_diederichs.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/multipolar/regression/tst_multipolar.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications_rm.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wavelength_units.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/fable/tst_ext.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/fable/tst_equivalence.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/fable/tst_read.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_show_calls.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_command_line.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout_compile.py" stop
288s   libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_io.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/gltbx/tst_ellipsoids.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_wildcard.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_parser.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_cells.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_2.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_2.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_3.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_4.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_cif.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_patterson.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_restraints_merge.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/ranges.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_poscar.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/kriber/tst_strudat.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_geometry.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_crystal_symmetry_builder.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_lex_parse_build.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_restraints.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_parser.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_citations.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model_builder.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_lex_parse_build.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_hklf.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_writer.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_fvar_encoding.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_pdb.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_tls.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/hybrid_36.py" exercise
288s   "/usr/lib/cctbx/python3.14/iotbx/pdb/hybrid_36_fem"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_ext.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_aa_names.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_rna_dna_names.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_sheet.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation_long.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/secondary_structure.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection_string.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure_2.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/remediation/tst_remediator.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_to_map_simple.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_examples.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/space_group_symbols.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/tst_cns.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_merge.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/no_merge_original_index.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/ccp4_map/tst.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_ext.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_dano.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_miller_dict.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_unmerged.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/tst_mtz_free_flipper.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_adsc.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_detectors.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/xplor/tst_xplormap.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phases.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_plots.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_csv_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_bioinformatics.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_input.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_multimodel.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_add_conformations.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_symmetry.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reindex.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_editor.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_fasta.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_link_records.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_merging_statistics.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_map_coefficients.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xparm.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xds_inp.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_spots_xds.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_cif.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_input.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_reader.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_xray_scale.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_alignment_as_hsearch.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ncbi_blast_xml.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/pdb_info.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_1.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_all_chain_ids.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_extract_xtal_data.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cli_parser.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mtz_as_cif.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_group_rounding.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_id_str.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_fetch.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_debug_write.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/metric_prefixes.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_word_index_generator.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/test_utils/__init__.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/pbs_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/sge_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/introspection.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_thread_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_state.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_pickle.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_fully_buffered_timeout.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_add_docstrings_with_ai.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_scheduling.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/easy_run.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_containers.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_path.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_math_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/assert_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_str_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/table_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_dlite.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_tokenizer.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_experimental.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_interface.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_object_oriented_patterns.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/find_reference_cycles.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_binary_search.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_topological_sort.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/clusterTests.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_citations.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_python_code_parsing.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_representation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_find_unused_imports.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_program_template.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_version.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_multicore.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_runtime_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_smoothing.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_basic.py"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_3"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_5"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_sym_mat3"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_optional_copy"
288s   "/usr/lib/cctbx/python3.14/scitbx/array_family/tst_rectangular_full_packed"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py"
288s   "/usr/lib/cctbx/python3.14/scitbx/serialization/tst_base_256"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_cubic_equation.py"
288s   "/usr/lib/cctbx/python3.14/scitbx/math/tests/tst"
288s   "/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens"
288s   "/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_householder"
288s   "/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd"
288s   "/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_cholesky"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_row_echelon.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_householder.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_matrix.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_cholesky.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_svd.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_eigensystem.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/error/tst_error.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_map.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_set.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_vector.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/regression_test.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_shared.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_cubicle_neighbors.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_r3_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/__init__.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_random_transform.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_graph.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_robust.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/superpose.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/spe.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/incremental_SO3_sampling.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_curve_fitting.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_weighted_correlation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_similarity_indices.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_exp_functions.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gcd.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_math.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_r3_rotation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_resample.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_line_search.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_quadrature.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_bessel.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_halton.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_euler_angles.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_superpose.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike_mom.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/sieve_of_eratosthenes.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/besselk.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/scale_curves.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_peak.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_clustering.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_g_function.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_angle_derivative.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_periodogram.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_tetrahedron.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_undirected_graph.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_so3_lie_algebra.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/minpack/tst.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_ext.py" 
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_curvatures.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py"
288s   "/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgsb/boost_python/tst_lbfgsb.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/fftpack/boost_python/tst_fftpack.py" 
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_grid.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_array_loops.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/principal_axes_of_inertia.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_recipe.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/chebyshev_lsq_example.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/immoptibox_ports.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/rigid_body_refinement_core.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/minimizer_comparisons.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_rigidity.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/test_cases_tardy_pdb.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_basic.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_tardy.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/tst.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_singular.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_molecules.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_sparse.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/iso_surface/tst_iso_surface.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/simplex.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/differential_evolution.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/golden_section_search.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_minimizer_lbfgs_general.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/direct_search_simulated_annealing.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/random/tests/tst_random.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/test_problems.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/glmtbx/tests/tst.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/suffixtree/test/tst_single.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py" --fix_random_seeds
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py" --fix_seed --on=E "hall: P 1" "hall: P 3" "hall: -P 2ybc"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py" --fix_random_seeds
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py"
288s   "/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py"
288s   "/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py"
288s   "/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=naive
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=levenberg-marquardt
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py" --verbose --scatterers=5 --resolution=0.2
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_least_squares.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/dps_core/tst_iotbx_converter.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_predict.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_ewald_sphere.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_partial_derivatives.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/sublattice_support/tst_sublattice.py"
288s   libtbx.python -c "from rstbx.run_tests import run; run()"
288s   libtbx.python "/usr/lib/python3/dist-packages/spotfinder/core_toolbox/boost_python/tst_small_image.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/spotfinder/diffraction/geometry.py"
288s   libtbx.python "/usr/lib/python3/dist-packages/spotfinder/math_support/sphere_formulae.py"
288s 
288s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py" [OK] 0.2s
288s   Time:  0.16
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     OK
288s "/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy" [OK] 0.0s
288s   Time:  0.00
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     OK
288s   Standard error:
288s     show_stack(1): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(9) run
288s     show_stack(2): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(15) <module>
288s     libc backtrace (20 frames, most recent call last):
288s       /usr/bin/python3.13(_start+0x25) [0x6a01f5]
288s       /usr/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x88) [0x75f2ac42a628]
288s       /usr/lib/x86_64-linux-gnu/libc.so.6(+0x2a575) [0x75f2ac42a575]
288s       /usr/bin/python3.13(Py_BytesMain+0x34) [0x6a0e74]
288s       /usr/bin/python3.13(Py_RunMain+0x342) [0x6d3ac2]
288s       /usr/bin/python3.13() [0x6d4945]
288s       /usr/bin/python3.13() [0x6d4b08]
288s       /usr/bin/python3.13() [0x6d5105]
288s       /usr/bin/python3.13() [0x6c38b1]
288s       /usr/bin/python3.13() [0x6c6a45]
288s       /usr/bin/python3.13(PyEval_EvalCode+0xc3) [0x56f733]
288s       /usr/bin/python3.13(_PyEval_EvalFrameDefault+0x26c9) [0x575d49]
288s       /usr/bin/python3.13(_PyObject_MakeTpCall+0x28d) [0x55928d]
288s       /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(+0x2439e) [0x75f2abbe639e]
288s       /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(boost::python::handle_exception_impl(boost::function_n<void>)+0x6b) [0x75f2abbe62ab]
288s       /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(+0x270e4) [0x75f2abbe90e4]
288s       /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(boost::python::objects::function::call(_object*, _object*) const+0xe6) [0x75f2abbe8cb6]
288s       /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-x86_64-linux-gnu.so(+0x21480) [0x75f2ac646480]
288s       /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-x86_64-linux-gnu.so(+0x20fa8) [0x75f2ac645fa8]
288s       /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-x86_64-linux-gnu.so(+0x16477) [0x75f2ac63b477]
288s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py" [OK] 0.0s
288s   Time:  0.04
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     OK
288s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py" [OK] 0.1s
288s   Time:  0.08
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     OK
288s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py" [OK] 0.3s
288s   Time:  0.31
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     OK
288s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py" [OK] 0.1s
288s   Time:  0.06
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     exercise_wstring: <Boost.Python.function object at 0x3ed6b290>
288s     OK
288s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py" [OK] 0.1s
288s   Time:  0.06
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     OK
288s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py" [OK] 0.0s
288s   Time:  0.04
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     OK
288s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py" [OK] 0.0s
288s   Time:  0.04
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     OK
288s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py" [OK] 0.1s
288s   Time:  0.08
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     OK
288s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py" [OK] 0.0s
288s   Time:  0.04
288s   Return code: 0
288s   OKs: 1
288s   Standard out:
288s     OK
290s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
290s 1
290s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
290s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py" [EXPECTED FAIL] 1.3s
290s   Time:  1.34
290s   Return code: 1
290s   OKs: 0
290s   Standard error:
290s     Traceback (most recent call last):
290s       File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 230, in <module>
290s         run(sys.argv[1:])
290s         ~~~^^^^^^^^^^^^^^
290s       File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 218, in run
290s         stringio_test_case().run()
290s         ~~~~~~~~~~~~~~~~~~~~~~~~^^
290s       File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 40, in run
290s         self.exercise_read()
290s         ~~~~~~~~~~~~~~~~~~^^
290s       File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 49, in exercise_read
290s         words = ext.test_read(streambuf(self.file_object), "read")
290s     ValueError: The method 'read' of the Python file object did not return a string.
290s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" [OK] 0.6s
290s   Time:  0.55
290s   Return code: 0
290s   OKs: 0
290s   Standard out:
290s     
290s     remove_fraction: 0.2
290s     
290s     data incompleteness: random ------------------------------
290s     number of all data: 1054
290s     number of incomplete data: 827
290s     start CC(exact_map, poor_map):  0.877235608406467
290s     start CC(exact_map, filled_map)1:  0.9923748913147759
290s     start CC(exact_map, filled_map)2:  0.9932227950228801
290s     
290s     data incompleteness: smallest ------------------------------
290s     number of all data: 1054
290s     number of incomplete data: 844
290s     start CC(exact_map, poor_map):  0.9980218160516707
290s     start CC(exact_map, filled_map)1:  0.9999748740662823
290s     start CC(exact_map, filled_map)2:  0.9999968130612383
290s     
290s     data incompleteness: highest ------------------------------
290s     number of all data: 1054
290s     number of incomplete data: 844
290s     start CC(exact_map, poor_map):  0.3818786913107765
290s     start CC(exact_map, filled_map)1:  0.9971830786189367
290s     start CC(exact_map, filled_map)2:  0.9959849263224512
290s     
290s     remove_fraction: 0.5
290s     
290s     data incompleteness: random ------------------------------
290s     number of all data: 1054
290s     number of incomplete data: 533
290s     start CC(exact_map, poor_map):  0.7274731381193488
290s     start CC(exact_map, filled_map)1:  0.9015831675245166
290s     start CC(exact_map, filled_map)2:  0.9911660481118573
290s     
290s     data incompleteness: smallest ------------------------------
290s     number of all data: 1054
290s     number of incomplete data: 527
290s     start CC(exact_map, poor_map):  0.9880878743856928
290s     start CC(exact_map, filled_map)1:  0.9055971624641237
290s     start CC(exact_map, filled_map)2:  0.9997105797127656
290s     
290s     data incompleteness: highest ------------------------------
290s     number of all data: 1054
290s     number of incomplete data: 527
290s     start CC(exact_map, poor_map):  0.1538907160682784
290s     start CC(exact_map, filled_map)1:  0.7754322280259367
290s     start CC(exact_map, filled_map)2:  0.9987051173664472
304s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" [OK] 16.3s
304s   Time: 16.27
304s   Return code: 0
304s   OKs: 0
305s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" [OK] 0.3s
305s   Time:  0.33
305s   Return code: 0
305s   OKs: 1
305s   Standard out:
305s     OK
305s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py" [OK] 0.5s
305s   Time:  0.45
305s   Return code: 0
305s   OKs: 1
305s   Standard out:
305s     OK
314s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" [OK] 8.5s
314s   Time:  8.50
314s   Return code: 0
314s   OKs: 0
314s   Standard out:
314s     (14.5791, 18.9529, 24.7845, 83, 109, 129)
314s     cc_map_data_from_shifted_xrs_shifted_map_data 0.9999563039408415
314s     *************************
314s     P 1
314s     (14.5791, 18.9529, 24.7845, 83, 109, 129)
314s     datat in: 3097
314s     data left: 1627
314s     *************************
314s     P -1
314s     (18.3685, 23.8791, 31.2265, 83, 109, 129)
314s     datat in: 6205
314s     data left: 3707
314s     *************************
314s     P 1 2 1
314s     (16.8518, 21.9073, 28.648, 90, 109, 90)
314s     datat in: 3267
314s     data left: 1651
314s     *************************
314s     C 1 2/c 1
314s     (26.7505, 34.7757, 45.4759, 90, 109, 90)
314s     datat in: 6209
314s     data left: 1734
314s     *************************
314s     P 2 2 2
314s     (20.8391, 27.0908, 35.4265, 90, 90, 90)
314s     datat in: 3510
314s     data left: 1980
314s     *************************
314s     I m m a
314s     (33.08, 43.004, 56.2361, 90, 90, 90)
314s     datat in: 6585
314s     data left: 6341
314s     *************************
314s     P 4
314s     (22.7437, 22.7437, 38.6642, 90, 90, 90)
314s     datat in: 3214
314s     data left: 821
314s     *************************
314s     P 41
314s     (22.7437, 22.7437, 38.6642, 90, 90, 90)
314s     datat in: 3195
314s     data left: 2815
314s     *************************
314s     I 41/a c d :2
314s     (45.4873, 45.4873, 77.3284, 90, 90, 90)
314s     datat in: 6220
314s     data left: 4633
314s     *************************
314s     P 3
314s     (21.6789, 21.6789, 36.8541, 90, 90, 120)
314s     datat in: 3123
314s     data left: 231
314s     *************************
314s     P 31
314s     (21.6789, 21.6789, 36.8541, 90, 90, 120)
314s     datat in: 3107
314s     data left: 2647
314s     *************************
314s     P 3 1 m
314s     (27.3137, 27.3137, 46.4333, 90, 90, 120)
314s     datat in: 3341
314s     data left: 1041
314s     *************************
314s     R -3 c :H
314s     (49.6323, 49.6323, 84.3749, 90, 90, 120)
314s     datat in: 6214
314s     data left: 504
314s     *************************
314s     P 6
314s     (27.3137, 27.3137, 46.4333, 90, 90, 120)
314s     datat in: 3204
314s     data left: 2272
314s     *************************
314s     P 63/m m c
314s     (43.3578, 43.3578, 73.7083, 90, 90, 120)
314s     datat in: 6794
314s     data left: 405
314s     *************************
314s     P 2 3
314s     (39.1487, 39.1487, 39.1487, 90, 90, 90)
314s     datat in: 3389
314s     data left: 694
314s     *************************
314s     I a -3 d
314s     (78.2974, 78.2974, 78.2974, 90, 90, 90)
314s     datat in: 6220
314s     data left: 3933
314s     *************************
314s     I 4/m c m (a+b-1/6,-a+b,c+1/4)
314s     (64.3288, 64.3288, 77.3284, 90, 90, 90)
314s     datat in: 6535
314s     data left: 5391
314s     *************************
314s     u+s,u,s: 8.43 8.28 0.15
314s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" [OK] 0.1s
314s   Time:  0.11
314s   Return code: 0
314s   OKs: 1
314s   Standard out:
314s     OK
314s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 [OK] 0.5s
314s   Time:  0.47
314s   Return code: 0
314s   OKs: 0
314s   Standard out:
314s     general_positions_only = True
314s     shake_sites_rmsd = 0.5
314s     shake_adp_spread = 20
314s     show_distances_threshold = 0
314s     bulk_solvent_correction = False
314s     target {
314s       type = *ls cc r1
314s       obs_type = *F I
314s       weighting_scheme = *unit shelxl_wght shelxl_wght_once
314s     }
314s     iteration_limit = 50
314s     grads_mean_sq_threshold = 1e-06
314s     use_classic_lbfgs = False
314s     use_lbfgs_emulation = False
314s     use_curvs = True
314s     approx_quad_limit_factor = 1.0
314s     bfgs_estimate_limit_factor = 1.0
314s     use_line_search = False
314s     use_gradient_flips = True
314s     try_approx_curvs = False
314s     show_dests = False
314s     show_distances_to_reference_structure = False
314s     f_calc_options {
314s       algorithm = *direct fft
314s       cos_sin_table = False
314s     }
314s     plot_samples {
314s       stages = initial final
314s       ix = None
314s       ix_auto = all random
314s       ix_random {
314s         samples_each_scattering_type = 3
314s         random_seed = 0
314s       }
314s       target {
314s         type = *Auto ls cc r1 ml
314s         obs_type = *Auto F I
314s         weighting_scheme = *Auto unit shelxl_wght shelxl_wght_once
314s       }
314s       x_radius = 5
314s       x_steps = 100
314s       u_min = -0.05
314s       u_max = 0.45
314s       u_steps = 100
314s       file_prefix = None
314s       pyplot = *gui pdf
314s     }
314s     
314s     P 31
314s     Ideal structure:
314s     Number of scatterers: 3
314s     At special positions: 0
314s     Unit cell: (10.693, 10.693, 18.178, 90, 90, 120)
314s     Space group: P 31 (No. 144)
314s     Label, Scattering, Multiplicity, Coordinates, Occupancy, Uiso, Ustar as Uiso
314s     N1   N      3 ( 0.8444  0.7580  0.4206) 1.00 0.1750 [ - ]
314s     C2   C      3 ( 0.2589  0.5113  0.4049) 1.00 0.2724 [ - ]
314s     O3   O      3 ( 0.7838  0.3033  0.4766) 1.00 0.1514 [ - ]
314s     
314s     Modified structure:
314s     Number of scatterers: 3
314s     At special positions: 0
314s     Unit cell: (10.693, 10.693, 18.178, 90, 90, 120)
314s     Space group: P 31 (No. 144)
314s     Label, Scattering, Multiplicity, Coordinates, Occupancy, Uiso, Ustar as Uiso
314s     N1   N      3 ( 0.8485  0.7815  0.3934) 1.00 0.2297 [ - ]
314s     C2   C      3 ( 0.2218  0.4736  0.3828) 1.00 0.0838 [ - ]
314s     O3   O      3 ( 0.7466  0.2868  0.4710) 1.00 0.2151 [ - ]
314s     
314s     rms difference: 0.49999999999999994
314s     
314s      cRMSD aRMSD uRMSD
314s      0.500 0.373 0.119 r1=0.4555
314s     Number of variables: 12
314s        1:  0.422 0.287 0.101 f=9.30e-02 |g|=5.62e-01 r1=0.3613 aq(6, -2)
314s        2:  0.366 0.239 0.065 f=5.94e-02 |g|=6.84e-01 r1=0.3170 aq(5, 5)
314s        3:  0.308 0.167 0.042 f=2.93e-02 |g|=2.25e-01 r1=0.2170 aq(3, 2)
314s        4:  0.283 0.098 0.008 f=8.12e-03 |g|=9.46e-02 r1=0.1157 aq(5, 3)
314s        5:  0.288 0.050 0.005 f=1.96e-03 |g|=2.81e-02 r1=0.0548 aq(5, 5)
314s        6:  0.278 0.010 0.004 f=1.31e-04 |g|=1.64e-03 r1=0.0154 aq(5, 5)
314s        7:  0.279 0.009 0.001 f=9.99e-05 |g|=3.01e-03 r1=0.0127 aq(2, 2)
314s        8:  0.278 0.005 0.000 f=1.33e-05 |g|=1.33e-04 r1=0.0042 aq(1, -2)
314s        9:  0.278 0.003 0.000 f=4.37e-06 |g|=4.63e-05 r1=0.0024 aq(4, 4)
314s       10:  0.278 0.002 0.000 f=1.28e-06 |g|=1.27e-05 r1=0.0013 aq(4, 4)
314s       11:  0.278 0.001 0.000 f=6.66e-07 |g|=3.87e-06 r1=0.0008 aq(3, -1)
314s       12:  0.278 0.001 0.000 f=3.37e-07 |g|=2.92e-06 r1=0.0007 aq(2, 2)
314s       13:  0.278 0.001 0.000 f=1.16e-07 |g|=9.81e-07 r1=0.0004 aq(1, -2)
314s     Number of iterations, evaluations: 13 14
314s     R1: 0.0004
314s     
314s     u+s,u,s: 0.40 0.37 0.03
315s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" [OK] 0.3s
315s   Time:  0.34
315s   Return code: 0
315s   OKs: 1
315s   Standard out:
315s     OK
315s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" [OK] 0.4s
315s   Time:  0.35
315s   Return code: 0
315s   OKs: 1
315s   Standard out:
315s     OK
387s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" [OK] 96.7s
387s   Time: 96.68
387s   Return code: 0
387s   OKs: 1
387s   Standard out:
387s     For periodic.. True: 226 None: 4  False: 0
387s     For aperiodic.. True: 0 None: 11  False: 219
387s     OK
4292s autopkgtest-virt-ssh [21:41:04]: ------- nova console-log 5f1220e2-3084-45b1-a1d0-9879e917dcdf (adt-resolute-amd64-cctbx-20260206-173423-juju-7f2275-prod-proposed-migration-environment-20-d7df366b-40dc-4bc4-b905-bd6c6cca8336) ------
4292s ERROR (CommandError): No server with a name or ID of '5f1220e2-3084-45b1-a1d0-9879e917dcdf' exists.
4292s ---------------------------------------------------
4292s ------- nova show 5f1220e2-3084-45b1-a1d0-9879e917dcdf (adt-resolute-amd64-cctbx-20260206-173423-juju-7f2275-prod-proposed-migration-environment-20-d7df366b-40dc-4bc4-b905-bd6c6cca8336) ------
4292s ERROR (CommandError): No server with a name or ID of '5f1220e2-3084-45b1-a1d0-9879e917dcdf' exists.
4292s ---------------------------------------------------
4292s 
4837s autopkgtest [21:50:09]: ERROR: testbed failure: testbed auxverb failed with exit code 255