0s autopkgtest [02:49:39]: starting date and time: 2026-02-06 02:49:39+0000 0s autopkgtest [02:49:39]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [02:49:39]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xdc60x4b/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ca-certificates --apt-upgrade cctbx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=ca-certificates/20250419build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-16.secgroup --name adt-resolute-amd64-cctbx-20260206-001420-juju-7f2275-prod-proposed-migration-environment-20-9f4fb490-3248-45a7-b168-9d196ac31d4f --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 10s Creating nova instance adt-resolute-amd64-cctbx-20260206-001420-juju-7f2275-prod-proposed-migration-environment-20-9f4fb490-3248-45a7-b168-9d196ac31d4f from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 92s autopkgtest [02:51:11]: testbed dpkg architecture: amd64 92s autopkgtest [02:51:11]: testbed apt version: 3.1.14 92s autopkgtest [02:51:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 95s autopkgtest [02:51:14]: testbed release detected to be: None 96s autopkgtest [02:51:15]: updating testbed package index (apt update) 96s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 96s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 96s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 96s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 96s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [221 kB] 96s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 96s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1631 kB] 96s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [31.4 kB] 96s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [277 kB] 96s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [212 kB] 96s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [7304 B] 96s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 97s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [32.9 kB] 97s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 97s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1475 kB] 97s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [569 kB] 97s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [43.2 kB] 97s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [27.5 kB] 97s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4896 B] 97s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1092 B] 97s Fetched 4667 kB in 1s (4273 kB/s) 98s Reading package lists... 98s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 99s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 99s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 99s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 99s Reading package lists... 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 100s The following packages will be upgraded: 100s amd64-microcode ca-certificates libdrm-amdgpu1 libdrm-common libdrm2 mawk 100s pollinate python3-linkify-it python3-referencing sed 100s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Need to get 933 kB of archives. 100s After this operation, 0 B of additional disk space will be used. 100s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 100s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 100s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 ca-certificates all 20250419build1 [163 kB] 100s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 100s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 100s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 100s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 100s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 100s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 100s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20250708.1ubuntu2 [310 kB] 100s dpkg-preconfigure: unable to re-open stdin: No such file or directory 100s Fetched 933 kB in 0s (70.6 MB/s) 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 100s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 100s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 100s Setting up sed (4.9-2build3) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 100s Preparing to unpack .../0-mawk_1.3.4.20260129-1_amd64.deb ... 100s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 100s Preparing to unpack .../1-ca-certificates_20250419build1_all.deb ... 100s Unpacking ca-certificates (20250419build1) over (20250419) ... 100s Preparing to unpack .../2-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 100s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 100s Preparing to unpack .../3-libdrm-common_2.4.131-1_all.deb ... 100s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 100s Preparing to unpack .../4-libdrm2_2.4.131-1_amd64.deb ... 100s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 100s Preparing to unpack .../5-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 100s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 100s Preparing to unpack .../6-pollinate_4.33-4ubuntu5_all.deb ... 100s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 100s Preparing to unpack .../7-python3-referencing_0.36.2-1ubuntu2_all.deb ... 100s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 100s Preparing to unpack .../8-amd64-microcode_3.20250708.1ubuntu2_amd64.deb ... 100s Unpacking amd64-microcode (3.20250708.1ubuntu2) over (3.20250708.1ubuntu1) ... 100s Setting up amd64-microcode (3.20250708.1ubuntu2) ... 100s amd64-microcode: microcode will be updated at next boot 100s Setting up ca-certificates (20250419build1) ... 102s Updating certificates in /etc/ssl/certs... 102s 0 added, 0 removed; done. 102s Setting up pollinate (4.33-4ubuntu5) ... 113s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 114s Setting up mawk (1.3.4.20260129-1) ... 114s Setting up libdrm-common (2.4.131-1) ... 114s Setting up python3-referencing (0.36.2-1ubuntu2) ... 114s Setting up libdrm2:amd64 (2.4.131-1) ... 114s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 114s Processing triggers for man-db (2.13.1-1) ... 114s Processing triggers for install-info (7.2-5) ... 114s Processing triggers for libc-bin (2.42-2ubuntu4) ... 114s Processing triggers for initramfs-tools (0.150ubuntu7) ... 114s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 118s Processing triggers for ca-certificates (20250419build1) ... 118s Updating certificates in /etc/ssl/certs... 119s 0 added, 0 removed; done. 119s Running hooks in /etc/ca-certificates/update.d... 119s done. 119s autopkgtest [02:51:38]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Solving dependencies... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s autopkgtest [02:51:39]: rebooting testbed after setup commands that affected boot 148s autopkgtest [02:52:07]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 150s autopkgtest [02:52:09]: @@@@@@@@@@@@@@@@@@@@ apt-source cctbx 154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe cctbx 2025.12+ds2+~3.26.0+ds1-3 (dsc) [3880 B] 154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe cctbx 2025.12+ds2+~3.26.0+ds1-3 (tar) [27.0 MB] 154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe cctbx 2025.12+ds2+~3.26.0+ds1-3 (diff) [420 kB] 154s gpgv: Signature made Wed Jan 21 19:47:36 2026 UTC 154s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 154s gpgv: issuer "tchet@debian.org" 154s gpgv: Can't check signature: No public key 154s dpkg-source: warning: cannot verify inline signature for ./cctbx_2025.12+ds2+~3.26.0+ds1-3.dsc: no acceptable signature found 154s autopkgtest [02:52:13]: testing package cctbx version 2025.12+ds2+~3.26.0+ds1-3 156s autopkgtest [02:52:15]: build not needed 165s autopkgtest [02:52:24]: test cctbx: preparing testbed 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Solving dependencies... 165s The following NEW packages will be installed: 165s adwaita-icon-theme at-spi2-common cpp cpp-15 cpp-15-x86-64-linux-gnu 165s cpp-x86-64-linux-gnu dconf-gsettings-backend dconf-service fontconfig 165s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 165s fonts-lato fonts-lyx g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu 165s gcc gcc-15 gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu 165s gtk-update-icon-cache hicolor-icon-theme icu-devtools libann-cctbx-dev 165s libann-cctbx0 libantlr3c-3.4-0 libasan8 libasound2-data libasound2t64 165s libasyncns0 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 165s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 165s libboost-container1.88-dev libboost-container1.88.0 libboost-graph1.88-dev 165s libboost-graph1.88.0 libboost-numpy1.88.0 libboost-python-dev 165s libboost-python1.88-dev libboost-python1.88.0 libboost-regex1.88-dev 165s libboost-regex1.88.0 libboost-serialization1.88-dev 165s libboost-serialization1.88.0 libboost-test1.88-dev libboost-test1.88.0 165s libboost-thread1.88.0 libboost-timer1.88.0 libboost1.88-dev libc-dev-bin 165s libc6-dev libcairo-gobject2 libcairo2 libcbf1t64 libcc1-0 libccp4-data 165s libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 libcolord2 165s libcrypt-dev libcups2t64 libdatrie1 libdconf1 libdecor-0-0 libdeflate0 165s libdouble-conversion3 libdrm-intel1 libegl-mesa0 libegl1 libepoxy0 165s libexpat1-dev libflac14 libfontconfig1 libgbm1 libgcc-15-dev 165s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 165s libgl1-mesa-dri libgles2 libglew2.2 libglu1-mesa libglut3.12 libglvnd0 165s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0t64 libgtk-3-common 165s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhwasan0 libice6 libicu-dev 165s libimagequant0 libinput-bin libinput10 libisl23 libitm1 libjbig0 165s libjpeg-turbo8 libjpeg8 libjs-jquery liblapack3 liblcms2-2 liblerc4 liblsan0 165s liblzf1 libmd4c0 libmmdb2-0 libmp3lame0 libmpc3 libmpg123-0t64 libmtdev1t64 165s libnetcdf22 libnotify4 libogg0 libopengl0 libopenjp2-7 libopus0 165s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 165s libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpulse0 libpython3-dev 165s libpython3.13-dev libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 165s libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 165s libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 165s libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libquadmath0 libraqm0 165s libsamplerate0 libsdl2-2.0-0 libsdl2-classic libsharpyuv0 libsm6 libsndfile1 165s libssm2 libstdc++-15-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 165s libtk8.6 libtsan2 libubsan1 libvorbis0a libvorbisenc2 libvulkan1 165s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 165s libwayland-egl1 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 165s libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 165s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 165s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 165s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 165s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 165s libxinerama1 libxkbcommon-x11-0 libxrandr2 libxrender1 libxshmfence1 165s libxslt1.1 libxss1 libxtst6 libxxf86vm1 libzopfli1 linux-libc-dev 165s mesa-libgallium pymol-data python-matplotlib-data python3-all python3-brotli 165s python3-cctbx python3-contourpy python3-cycler python3-decorator python3-dev 165s python3-flexcache python3-flexparser python3-fonttools python3-h5py 165s python3-h5py-serial python3-hdf5plugin python3-iniconfig python3-kiwisolver 165s python3-legacy-cgi python3-lxml python3-lz4 python3-matplotlib 165s python3-mpmath python3-mrcfile python3-natsort python3-numpy 165s python3-numpy-dev python3-nxmx python3-opengl python3-ordered-set 165s python3-pil python3-pil.imagetk python3-pint python3-platformdirs 165s python3-pluggy python3-procrunner python3-pycbf python3-pymol python3-pyqt5 165s python3-pyqt5.qtopengl python3-pyqt5.sip python3-pytest python3-scipy 165s python3-sympy python3-tk python3-tqdm python3-ufolib2 python3-wxgtk4.0 165s python3-zopfli python3.13-dev python3.13-tk python3.14 python3.14-minimal 165s python3.14-tk rpcsvc-proto sphinx-rtd-theme-common unicode-data x11-common 165s zlib1g-dev 165s 0 upgraded, 285 newly installed, 0 to remove and 0 not upgraded. 165s Need to get 314 MB of archives. 165s After this operation, 1540 MB of additional disk space will be used. 165s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-lato all 2.015-1build1 [2779 kB] 166s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 166s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 166s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 166s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 166s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 167s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 167s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 167s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [8584 B] 167s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 167s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 167s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 167s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 167s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 167s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 167s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 167s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 167s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdk-pixbuf-2.0-0 amd64 2.44.4+dfsg-1 [153 kB] 167s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 gtk-update-icon-cache amd64 4.20.3+ds-3 [54.9 kB] 167s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 hicolor-icon-theme all 0.18-2build1 [13.2 kB] 167s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 adwaita-icon-theme all 49.0-1 [581 kB] 167s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 at-spi2-common all 2.59.0-1 [9774 B] 167s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 167s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 167s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 167s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 167s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 167s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 167s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libdconf1 amd64 0.49.0-4 [40.5 kB] 167s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-service amd64 0.49.0-4 [27.7 kB] 167s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 dconf-gsettings-backend amd64 0.49.0-4 [22.2 kB] 167s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 167s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 167s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 167s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 167s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 167s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 167s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 167s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB] 167s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 167s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB] 167s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB] 168s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB] 168s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB] 168s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB] 168s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB] 168s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB] 168s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 168s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 168s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 168s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 168s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 168s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 168s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.18.0-9.9 [1860 kB] 168s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 168s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 168s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 168s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 168s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 169s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 169s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 169s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 169s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 169s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libann-cctbx0 amd64 1.1.2+doc-9build2 [33.1 kB] 169s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 libann-cctbx-dev amd64 1.1.2+doc-9build2 [46.0 kB] 169s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4build3 [46.3 kB] 169s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libasound2-data all 1.2.15.3-1ubuntu1 [21.4 kB] 169s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libasound2t64 amd64 1.2.15.3-1ubuntu1 [418 kB] 169s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libasyncns0 amd64 0.8-7 [12.4 kB] 169s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk1.0-0t64 amd64 2.59.0-1 [57.1 kB] 169s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB] 169s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libatspi2.0-0t64 amd64 2.59.0-1 [85.7 kB] 169s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libatk-bridge2.0-0t64 amd64 2.59.0-1 [67.6 kB] 169s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common-data amd64 0.8-17ubuntu2 [31.5 kB] 169s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-common3 amd64 0.8-17ubuntu2 [23.7 kB] 169s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libavahi-client3 amd64 0.8-17ubuntu2 [27.3 kB] 169s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.88-dev amd64 1.88.0-1.4ubuntu3 [11.3 MB] 169s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-container1.88.0 amd64 1.88.0-1.4ubuntu3 [265 kB] 169s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-container1.88-dev amd64 1.88.0-1.4ubuntu3 [269 kB] 169s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-graph1.88.0 amd64 1.88.0-1.4ubuntu3 [369 kB] 169s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-regex1.88.0 amd64 1.88.0-1.4ubuntu3 [347 kB] 169s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 169s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-regex1.88-dev amd64 1.88.0-1.4ubuntu3 [360 kB] 169s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-serialization1.88.0 amd64 1.88.0-1.4ubuntu3 [347 kB] 169s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-serialization1.88-dev amd64 1.88.0-1.4ubuntu3 [388 kB] 169s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-test1.88.0 amd64 1.88.0-1.4ubuntu3 [462 kB] 169s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-test1.88-dev amd64 1.88.0-1.4ubuntu3 [570 kB] 169s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-graph1.88-dev amd64 1.88.0-1.4ubuntu3 [400 kB] 169s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-python1.88.0 amd64 1.88.0-1.4ubuntu3 [360 kB] 169s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-numpy1.88.0 amd64 1.88.0-1.4ubuntu3 [248 kB] 169s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libexpat1-dev amd64 2.7.4-1 [145 kB] 169s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 169s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.13-dev amd64 3.13.11-1 [5798 kB] 169s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3-dev amd64 3.13.9-3 [11.2 kB] 169s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-dev amd64 3.13.11-1 [508 kB] 169s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dev amd64 3.13.9-3 [26.6 kB] 169s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-python1.88-dev amd64 1.88.0-1.4ubuntu3 [382 kB] 169s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-python-dev amd64 1.88.0.0ubuntu3 [4672 B] 169s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-thread1.88.0 amd64 1.88.0-1.4ubuntu3 [273 kB] 169s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libboost-timer1.88.0 amd64 1.88.0-1.4ubuntu3 [243 kB] 169s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 169s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 169s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 169s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 169s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 169s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo-gobject2 amd64 1.18.4-3 [127 kB] 169s Get:107 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 169s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 170s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcbf1t64 amd64 0.9.7+dfsg1-5.1 [362 kB] 170s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4-data all 8.0.0-5build1 [65.4 kB] 170s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4c0t64 amd64 8.0.0-5build1 [95.9 kB] 170s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmmdb2-0 amd64 2.0.22-1build1 [369 kB] 170s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4f0t64 amd64 8.0.0-5build1 [221 kB] 170s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 libccp4-dev amd64 8.0.0-5build1 [42.4 kB] 170s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcctbx0 amd64 2025.12+ds2+~3.26.0+ds1-3 [2009 kB] 170s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcctbx-dev amd64 2025.12+ds2+~3.26.0+ds1-3 [1197 kB] 170s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 170s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolord2 amd64 1.4.8-2build1 [149 kB] 170s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libcups2t64 amd64 2.4.16-1ubuntu1 [273 kB] 170s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 170s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-client0 amd64 1.24.0-2 [28.5 kB] 170s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libdecor-0-0 amd64 0.2.5-1 [16.5 kB] 170s Get:123 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdouble-conversion3 amd64 3.4.0-1 [41.4 kB] 170s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libpciaccess0 amd64 0.18.1-1ubuntu2 [19.0 kB] 170s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-intel1 amd64 2.4.131-1 [66.7 kB] 170s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libx11-xcb1 amd64 2:1.8.12-1build1 [8044 B] 170s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-dri3-0 amd64 1.17.0-2ubuntu1 [7540 B] 170s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-present0 amd64 1.17.0-2ubuntu1 [6112 B] 170s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-randr0 amd64 1.17.0-2ubuntu1 [17.9 kB] 170s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-sync1 amd64 1.17.0-2ubuntu1 [9348 B] 170s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xfixes0 amd64 1.17.0-2ubuntu1 [10.2 kB] 170s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libxshmfence1 amd64 1.3.3-1build1 [5284 B] 170s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 mesa-libgallium amd64 25.3.3-1ubuntu1 [11.1 MB] 170s Get:134 http://ftpmaster.internal/ubuntu resolute/main amd64 libgbm1 amd64 25.3.3-1ubuntu1 [34.0 kB] 170s Get:135 http://ftpmaster.internal/ubuntu resolute/main amd64 libegl-mesa0 amd64 25.3.3-1ubuntu1 [117 kB] 170s Get:136 http://ftpmaster.internal/ubuntu resolute/main amd64 libepoxy0 amd64 1.5.10-2build1 [226 kB] 170s Get:137 http://ftpmaster.internal/ubuntu resolute/main amd64 libogg0 amd64 1.3.6-2 [23.4 kB] 170s Get:138 http://ftpmaster.internal/ubuntu resolute/main amd64 libflac14 amd64 1.5.0+ds-5 [168 kB] 170s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 libvulkan1 amd64 1.4.335.0-1 [158 kB] 170s Get:140 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1-mesa-dri amd64 25.3.3-1ubuntu1 [37.5 kB] 170s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 libglvnd0 amd64 1.7.0-3 [64.1 kB] 170s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-glx0 amd64 1.17.0-2ubuntu1 [24.7 kB] 170s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libxxf86vm1 amd64 1:1.1.4-2 [10.6 kB] 170s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx-mesa0 amd64 25.3.3-1ubuntu1 [110 kB] 170s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 libglx0 amd64 1.7.0-3 [38.9 kB] 170s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libgl1 amd64 1.7.0-3 [98.3 kB] 170s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglew2.2 amd64 2.2.0-4build2 [181 kB] 170s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglut3.12 amd64 3.4.0-6 [101 kB] 170s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 170s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 170s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 170s Get:152 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 170s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 170s Get:154 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 170s Get:155 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 170s Get:156 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-cursor0 amd64 1.24.0-2 [10.8 kB] 170s Get:157 http://ftpmaster.internal/ubuntu resolute/main amd64 libwayland-egl1 amd64 1.24.0-2 [6248 B] 170s Get:158 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcomposite1 amd64 1:0.4.6-1build1 [6664 B] 170s Get:159 http://ftpmaster.internal/ubuntu resolute/main amd64 libxfixes3 amd64 1:6.0.0-2build2 [11.1 kB] 170s Get:160 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcursor1 amd64 1:1.2.3-1build1 [22.1 kB] 170s Get:161 http://ftpmaster.internal/ubuntu resolute/main amd64 libxdamage1 amd64 1:1.1.7-1 [6582 B] 170s Get:162 http://ftpmaster.internal/ubuntu resolute/main amd64 libxinerama1 amd64 2:1.1.4-3build2 [6472 B] 170s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrandr2 amd64 2:1.5.4-1build1 [19.6 kB] 170s Get:164 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB] 170s Get:165 http://ftpmaster.internal/ubuntu resolute/main amd64 libgtk-3-0t64 amd64 3.24.50-1ubuntu2 [3263 kB] 170s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 170s Get:167 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 170s Get:168 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 170s Get:169 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 170s Get:170 http://ftpmaster.internal/ubuntu resolute/main amd64 libwacom-common all 2.16.1-1 [113 kB] 170s Get:171 http://ftpmaster.internal/ubuntu resolute/main amd64 libwacom9 amd64 2.16.1-1 [28.3 kB] 170s Get:172 http://ftpmaster.internal/ubuntu resolute/main amd64 libinput-bin amd64 1.30.1-1 [24.7 kB] 170s Get:173 http://ftpmaster.internal/ubuntu resolute/main amd64 libmtdev1t64 amd64 1.1.7-1build1 [15.2 kB] 170s Get:174 http://ftpmaster.internal/ubuntu resolute/main amd64 libinput10 amd64 1.30.1-1 [160 kB] 170s Get:175 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 170s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblzf1 amd64 3.6-4build1 [7490 B] 170s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmd4c0 amd64 0.5.2-2build1 [43.7 kB] 170s Get:178 http://ftpmaster.internal/ubuntu resolute/main amd64 libmp3lame0 amd64 3.100-6build2 [146 kB] 170s Get:179 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpg123-0t64 amd64 1.33.3-2 [176 kB] 170s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 170s Get:181 http://ftpmaster.internal/ubuntu resolute/main amd64 libnotify4 amd64 0.8.8-1 [28.6 kB] 170s Get:182 http://ftpmaster.internal/ubuntu resolute/main amd64 libopus0 amd64 1.6.1-1 [3564 kB] 170s Get:183 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 170s Get:184 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 170s Get:185 http://ftpmaster.internal/ubuntu resolute/main amd64 libvorbis0a amd64 1.3.7-3build1 [103 kB] 170s Get:186 http://ftpmaster.internal/ubuntu resolute/main amd64 libvorbisenc2 amd64 1.3.7-3build1 [79.8 kB] 170s Get:187 http://ftpmaster.internal/ubuntu resolute/main amd64 libsndfile1 amd64 1.2.2-4 [219 kB] 170s Get:188 http://ftpmaster.internal/ubuntu resolute/main amd64 libpulse0 amd64 1:17.0+dfsg1-2ubuntu4 [293 kB] 171s Get:189 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 171s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 171s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5core5t64 amd64 5.15.18+dfsg-1ubuntu1 [2066 kB] 171s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5dbus5t64 amd64 5.15.18+dfsg-1ubuntu1 [222 kB] 171s Get:193 http://ftpmaster.internal/ubuntu resolute/main amd64 libegl1 amd64 1.7.0-3 [29.7 kB] 171s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5network5t64 amd64 5.15.18+dfsg-1ubuntu1 [731 kB] 171s Get:195 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 171s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-icccm4 amd64 0.4.2-1build1 [11.0 kB] 171s Get:197 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-util1 amd64 0.4.1-1build1 [11.1 kB] 171s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-image0 amd64 0.4.0-2build2 [11.0 kB] 171s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-keysyms1 amd64 0.4.1-1build1 [8704 B] 171s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxcb-render-util0 amd64 0.3.10-1build1 [10.4 kB] 171s Get:201 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shape0 amd64 1.17.0-2ubuntu1 [6172 B] 171s Get:202 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xinerama0 amd64 1.17.0-2ubuntu1 [5542 B] 171s Get:203 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xinput0 amd64 1.17.0-2ubuntu1 [32.5 kB] 171s Get:204 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-xkb1 amd64 1.17.0-2ubuntu1 [32.7 kB] 171s Get:205 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon-x11-0 amd64 1.12.3-1 [15.0 kB] 171s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5gui5t64 amd64 5.15.18+dfsg-1ubuntu1 [3819 kB] 171s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5widgets5t64 amd64 5.15.18+dfsg-1ubuntu1 [2584 kB] 171s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5xml5t64 amd64 5.15.18+dfsg-1ubuntu1 [124 kB] 171s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5designer5 amd64 5.15.18-1 [2837 kB] 171s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5sql5t64 amd64 5.15.18+dfsg-1ubuntu1 [123 kB] 171s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5help5 amd64 5.15.18-1 [163 kB] 171s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5opengl5t64 amd64 5.15.18+dfsg-1ubuntu1 [150 kB] 171s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5printsupport5t64 amd64 5.15.18+dfsg-1ubuntu1 [209 kB] 171s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqt5test5t64 amd64 5.15.18+dfsg-1ubuntu1 [149 kB] 171s Get:215 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 171s Get:216 http://ftpmaster.internal/ubuntu resolute/main amd64 libsamplerate0 amd64 0.2.2-4build2 [1343 kB] 171s Get:217 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 171s Get:218 http://ftpmaster.internal/ubuntu resolute/main amd64 libsdl2-classic amd64 2.32.10+dfsg-6 [710 kB] 171s Get:219 http://ftpmaster.internal/ubuntu resolute/main amd64 libsdl2-2.0-0 amd64 2.32.10+dfsg-6 [14.0 kB] 171s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 libssm2 amd64 1.4.0-2build2 [88.7 kB] 171s Get:221 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 171s Get:222 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 171s Get:223 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 171s Get:224 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1build1 [12.8 kB] 171s Get:225 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1build1 [26.4 kB] 171s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxbase3.2-1t64 amd64 3.2.9+dfsg-1 [931 kB] 171s Get:227 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtst6 amd64 2:1.2.5-1build1 [13.1 kB] 171s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxgtk3.2-1t64 amd64 3.2.9+dfsg-1 [4703 kB] 172s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 libwxgtk-gl3.2-1t64 amd64 3.2.9+dfsg-1 [53.1 kB] 172s Get:230 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 172s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3build1 [114 kB] 172s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 pymol-data all 3.1.0+dfsg-1build2 [1392 kB] 172s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 172s Get:234 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 172s Get:235 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-all amd64 3.13.9-3 [890 B] 172s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 172s Get:237 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-legacy-cgi all 2.6.4-2 [17.2 kB] 172s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pycbf amd64 0.9.7+dfsg1-5.1 [181 kB] 172s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py-serial amd64 3.15.1-4 [1586 kB] 172s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-h5py all 3.15.1-4 [11.3 kB] 172s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-hdf5plugin all 5.1.0-1 [23.3 kB] 172s Get:242 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 172s Get:243 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 172s Get:244 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.11-1 [108 kB] 172s Get:245 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.2-1 [109 kB] 172s Get:246 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-3 [11.2 kB] 172s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B] 172s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.3-1 [255 kB] 172s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 172s Get:250 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 172s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.5+dfsg-1 [27.7 kB] 172s Get:252 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 172s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.16.3-4 [19.0 MB] 173s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 173s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 173s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 173s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 173s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1build1 [9543 kB] 173s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.61.1-3 [1742 kB] 173s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 173s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 173s Get:262 http://ftpmaster.internal/ubuntu resolute/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1013 kB] 173s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mrcfile all 1.5.4-2 [116 kB] 173s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-natsort all 8.4.0-2 [34.2 kB] 173s Get:265 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-flexcache all 0.3-3 [13.6 kB] 173s Get:266 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-flexparser all 0.4-2 [44.0 kB] 173s Get:267 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.5.1-1 [17.1 kB] 173s Get:268 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pint all 0.25.2-2 [208 kB] 173s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nxmx all 0.0.4-1build1 [16.6 kB] 173s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ordered-set all 4.1.0-1build1 [9668 B] 173s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-procrunner all 2.3.3-2 [12.0 kB] 174s Get:272 http://ftpmaster.internal/ubuntu resolute/main amd64 libgles2 amd64 1.7.0-3 [17.5 kB] 174s Get:273 http://ftpmaster.internal/ubuntu resolute/main amd64 libopengl0 amd64 1.7.0-3 [32.8 kB] 174s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglu1-mesa amd64 9.0.2-1.1build2 [159 kB] 174s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-opengl all 3.1.10+dfsg-1 [633 kB] 174s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5.sip amd64 12.17.2-1 [81.1 kB] 174s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-3build2 [2737 kB] 174s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-3build2 [127 kB] 174s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pymol amd64 3.1.0+dfsg-1build2 [7762 kB] 174s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-tqdm all 4.67.1-7 [93.3 kB] 174s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-wxgtk4.0 amd64 4.2.4+dfsg-1 [11.1 MB] 174s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cctbx amd64 2025.12+ds2+~3.26.0+ds1-3 [33.5 MB] 176s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-2 [6962 B] 176s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-2 [21.1 kB] 176s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 9.0.2-2 [277 kB] 176s Fetched 314 MB in 10s (31.1 MB/s) 176s Selecting previously unselected package fonts-lato. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 176s Preparing to unpack .../000-fonts-lato_2.015-1build1_all.deb ... 176s Unpacking fonts-lato (2.015-1build1) ... 176s Selecting previously unselected package python3-numpy-dev:amd64. 176s Preparing to unpack .../001-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 176s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 176s Selecting previously unselected package libblas3:amd64. 176s Preparing to unpack .../002-libblas3_3.12.1-7ubuntu1_amd64.deb ... 176s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 176s Selecting previously unselected package libgfortran5:amd64. 176s Preparing to unpack .../003-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 176s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 176s Selecting previously unselected package liblapack3:amd64. 176s Preparing to unpack .../004-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 176s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 176s Selecting previously unselected package python3-numpy. 176s Preparing to unpack .../005-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 176s Unpacking python3-numpy (1:2.3.5+ds-3) ... 176s Selecting previously unselected package libpython3.14-minimal:amd64. 176s Preparing to unpack .../006-libpython3.14-minimal_3.14.2-1_amd64.deb ... 176s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 176s Selecting previously unselected package python3.14-minimal. 176s Preparing to unpack .../007-python3.14-minimal_3.14.2-1_amd64.deb ... 176s Unpacking python3.14-minimal (3.14.2-1) ... 176s Selecting previously unselected package libgdk-pixbuf2.0-common. 176s Preparing to unpack .../008-libgdk-pixbuf2.0-common_2.44.4+dfsg-1_all.deb ... 176s Unpacking libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ... 176s Selecting previously unselected package libjpeg-turbo8:amd64. 176s Preparing to unpack .../009-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 176s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 176s Selecting previously unselected package libjpeg8:amd64. 176s Preparing to unpack .../010-libjpeg8_8c-2ubuntu11_amd64.deb ... 176s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 176s Selecting previously unselected package libdeflate0:amd64. 176s Preparing to unpack .../011-libdeflate0_1.23-2_amd64.deb ... 176s Unpacking libdeflate0:amd64 (1.23-2) ... 176s Selecting previously unselected package libjbig0:amd64. 176s Preparing to unpack .../012-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 176s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 176s Selecting previously unselected package liblerc4:amd64. 176s Preparing to unpack .../013-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 176s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 177s Selecting previously unselected package libsharpyuv0:amd64. 177s Preparing to unpack .../014-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 177s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 177s Selecting previously unselected package libwebp7:amd64. 177s Preparing to unpack .../015-libwebp7_1.5.0-0.1build1_amd64.deb ... 177s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 177s Selecting previously unselected package libtiff6:amd64. 177s Preparing to unpack .../016-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 177s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 177s Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. 177s Preparing to unpack .../017-libgdk-pixbuf-2.0-0_2.44.4+dfsg-1_amd64.deb ... 177s Unpacking libgdk-pixbuf-2.0-0:amd64 (2.44.4+dfsg-1) ... 177s Selecting previously unselected package gtk-update-icon-cache. 177s Preparing to unpack .../018-gtk-update-icon-cache_4.20.3+ds-3_amd64.deb ... 177s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 177s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 177s Unpacking gtk-update-icon-cache (4.20.3+ds-3) ... 177s Selecting previously unselected package hicolor-icon-theme. 177s Preparing to unpack .../019-hicolor-icon-theme_0.18-2build1_all.deb ... 177s Unpacking hicolor-icon-theme (0.18-2build1) ... 177s Selecting previously unselected package adwaita-icon-theme. 177s Preparing to unpack .../020-adwaita-icon-theme_49.0-1_all.deb ... 177s Unpacking adwaita-icon-theme (49.0-1) ... 177s Selecting previously unselected package at-spi2-common. 177s Preparing to unpack .../021-at-spi2-common_2.59.0-1_all.deb ... 177s Unpacking at-spi2-common (2.59.0-1) ... 177s Selecting previously unselected package libisl23:amd64. 177s Preparing to unpack .../022-libisl23_0.27-1build1_amd64.deb ... 177s Unpacking libisl23:amd64 (0.27-1build1) ... 177s Selecting previously unselected package libmpc3:amd64. 177s Preparing to unpack .../023-libmpc3_1.3.1-2_amd64.deb ... 177s Unpacking libmpc3:amd64 (1.3.1-2) ... 177s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 177s Preparing to unpack .../024-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 177s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 177s Selecting previously unselected package cpp-15. 177s Preparing to unpack .../025-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 177s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 177s Selecting previously unselected package cpp-x86-64-linux-gnu. 177s Preparing to unpack .../026-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 177s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 177s Selecting previously unselected package cpp. 177s Preparing to unpack .../027-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 177s Unpacking cpp (4:15.2.0-4ubuntu1) ... 177s Selecting previously unselected package libdconf1:amd64. 177s Preparing to unpack .../028-libdconf1_0.49.0-4_amd64.deb ... 177s Unpacking libdconf1:amd64 (0.49.0-4) ... 177s Selecting previously unselected package dconf-service. 177s Preparing to unpack .../029-dconf-service_0.49.0-4_amd64.deb ... 177s Unpacking dconf-service (0.49.0-4) ... 177s Selecting previously unselected package dconf-gsettings-backend:amd64. 177s Preparing to unpack .../030-dconf-gsettings-backend_0.49.0-4_amd64.deb ... 177s Unpacking dconf-gsettings-backend:amd64 (0.49.0-4) ... 177s Selecting previously unselected package fonts-dejavu-mono. 177s Preparing to unpack .../031-fonts-dejavu-mono_2.37-8build1_all.deb ... 177s Unpacking fonts-dejavu-mono (2.37-8build1) ... 177s Selecting previously unselected package fonts-dejavu-core. 177s Preparing to unpack .../032-fonts-dejavu-core_2.37-8build1_all.deb ... 177s Unpacking fonts-dejavu-core (2.37-8build1) ... 177s Selecting previously unselected package fontconfig-config. 177s Preparing to unpack .../033-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 177s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 177s Selecting previously unselected package libfontconfig1:amd64. 177s Preparing to unpack .../034-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 177s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 177s Selecting previously unselected package fontconfig. 177s Preparing to unpack .../035-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 177s Unpacking fontconfig (2.17.1-3ubuntu1) ... 177s Selecting previously unselected package fonts-font-awesome. 177s Preparing to unpack .../036-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 177s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 177s Selecting previously unselected package fonts-lyx. 177s Preparing to unpack .../037-fonts-lyx_2.5.0~RC2-3_all.deb ... 177s Unpacking fonts-lyx (2.5.0~RC2-3) ... 177s Selecting previously unselected package libcc1-0:amd64. 177s Preparing to unpack .../038-libcc1-0_15.2.0-12ubuntu1_amd64.deb ... 177s Unpacking libcc1-0:amd64 (15.2.0-12ubuntu1) ... 177s Selecting previously unselected package libgomp1:amd64. 177s Preparing to unpack .../039-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 177s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 177s Selecting previously unselected package libitm1:amd64. 177s Preparing to unpack .../040-libitm1_15.2.0-12ubuntu1_amd64.deb ... 177s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ... 177s Selecting previously unselected package libasan8:amd64. 177s Preparing to unpack .../041-libasan8_15.2.0-12ubuntu1_amd64.deb ... 177s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ... 177s Selecting previously unselected package liblsan0:amd64. 177s Preparing to unpack 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package libavahi-common-data:amd64. 178s Preparing to unpack .../073-libavahi-common-data_0.8-17ubuntu2_amd64.deb ... 178s Unpacking libavahi-common-data:amd64 (0.8-17ubuntu2) ... 178s Selecting previously unselected package libavahi-common3:amd64. 178s Preparing to unpack .../074-libavahi-common3_0.8-17ubuntu2_amd64.deb ... 178s Unpacking libavahi-common3:amd64 (0.8-17ubuntu2) ... 178s Selecting previously unselected package libavahi-client3:amd64. 178s Preparing to unpack .../075-libavahi-client3_0.8-17ubuntu2_amd64.deb ... 178s Unpacking libavahi-client3:amd64 (0.8-17ubuntu2) ... 178s Selecting previously unselected package libboost1.88-dev:amd64. 178s Preparing to unpack .../076-libboost1.88-dev_1.88.0-1.4ubuntu3_amd64.deb ... 178s Unpacking libboost1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 179s Selecting previously unselected package libboost-container1.88.0:amd64. 179s Preparing to unpack .../077-libboost-container1.88.0_1.88.0-1.4ubuntu3_amd64.deb ... 179s Unpacking 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previously unselected package zlib1g-dev:amd64. 179s Preparing to unpack .../091-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 179s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 179s Selecting previously unselected package libpython3.13-dev:amd64. 179s Preparing to unpack .../092-libpython3.13-dev_3.13.11-1_amd64.deb ... 179s Unpacking libpython3.13-dev:amd64 (3.13.11-1) ... 180s Selecting previously unselected package libpython3-dev:amd64. 180s Preparing to unpack .../093-libpython3-dev_3.13.9-3_amd64.deb ... 180s Unpacking libpython3-dev:amd64 (3.13.9-3) ... 180s Selecting previously unselected package python3.13-dev. 180s Preparing to unpack .../094-python3.13-dev_3.13.11-1_amd64.deb ... 180s Unpacking python3.13-dev (3.13.11-1) ... 180s Selecting previously unselected package python3-dev. 180s Preparing to unpack .../095-python3-dev_3.13.9-3_amd64.deb ... 180s Unpacking python3-dev (3.13.9-3) ... 180s Selecting previously unselected package 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Selecting previously unselected package libsz2:amd64. 180s Preparing to unpack .../106-libsz2_1.1.5-1_amd64.deb ... 180s Unpacking libsz2:amd64 (1.1.5-1) ... 180s Selecting previously unselected package libhdf5-310:amd64. 180s Preparing to unpack .../107-libhdf5-310_1.14.6+repack-2_amd64.deb ... 180s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 180s Selecting previously unselected package libcbf1t64:amd64. 180s Preparing to unpack .../108-libcbf1t64_0.9.7+dfsg1-5.1_amd64.deb ... 180s Unpacking libcbf1t64:amd64 (0.9.7+dfsg1-5.1) ... 180s Selecting previously unselected package libccp4-data. 180s Preparing to unpack .../109-libccp4-data_8.0.0-5build1_all.deb ... 180s Unpacking libccp4-data (8.0.0-5build1) ... 180s Selecting previously unselected package libccp4c0t64:amd64. 180s Preparing to unpack .../110-libccp4c0t64_8.0.0-5build1_amd64.deb ... 180s Unpacking libccp4c0t64:amd64 (8.0.0-5build1) ... 180s Selecting previously unselected package libmmdb2-0:amd64. 180s Preparing to unpack .../111-libmmdb2-0_2.0.22-1build1_amd64.deb ... 180s Unpacking libmmdb2-0:amd64 (2.0.22-1build1) ... 180s Selecting previously unselected package libccp4f0t64:amd64. 180s Preparing to unpack .../112-libccp4f0t64_8.0.0-5build1_amd64.deb ... 180s Unpacking libccp4f0t64:amd64 (8.0.0-5build1) ... 180s Selecting previously unselected package libccp4-dev:amd64. 180s Preparing to unpack .../113-libccp4-dev_8.0.0-5build1_amd64.deb ... 180s Unpacking libccp4-dev:amd64 (8.0.0-5build1) ... 180s Selecting previously unselected package libcctbx0. 180s Preparing to unpack .../114-libcctbx0_2025.12+ds2+~3.26.0+ds1-3_amd64.deb ... 180s Unpacking libcctbx0 (2025.12+ds2+~3.26.0+ds1-3) ... 180s Selecting previously unselected package libcctbx-dev. 180s Preparing to unpack .../115-libcctbx-dev_2025.12+ds2+~3.26.0+ds1-3_amd64.deb ... 180s Unpacking libcctbx-dev (2025.12+ds2+~3.26.0+ds1-3) ... 180s Selecting previously unselected package liblcms2-2:amd64. 180s Preparing to unpack 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libdecor-0-0:amd64 (0.2.5-1) ... 180s Selecting previously unselected package libdouble-conversion3:amd64. 180s Preparing to unpack .../122-libdouble-conversion3_3.4.0-1_amd64.deb ... 180s Unpacking libdouble-conversion3:amd64 (3.4.0-1) ... 180s Selecting previously unselected package libpciaccess0:amd64. 180s Preparing to unpack .../123-libpciaccess0_0.18.1-1ubuntu2_amd64.deb ... 180s Unpacking libpciaccess0:amd64 (0.18.1-1ubuntu2) ... 180s Selecting previously unselected package libdrm-intel1:amd64. 180s Preparing to unpack .../124-libdrm-intel1_2.4.131-1_amd64.deb ... 180s Unpacking libdrm-intel1:amd64 (2.4.131-1) ... 180s Selecting previously unselected package libx11-xcb1:amd64. 180s Preparing to unpack .../125-libx11-xcb1_2%3a1.8.12-1build1_amd64.deb ... 180s Unpacking libx11-xcb1:amd64 (2:1.8.12-1build1) ... 180s Selecting previously unselected package libxcb-dri3-0:amd64. 180s Preparing to unpack .../126-libxcb-dri3-0_1.17.0-2ubuntu1_amd64.deb ... 180s Unpacking libxcb-dri3-0:amd64 (1.17.0-2ubuntu1) ... 180s Selecting previously unselected package libxcb-present0:amd64. 180s Preparing to unpack .../127-libxcb-present0_1.17.0-2ubuntu1_amd64.deb ... 180s Unpacking libxcb-present0:amd64 (1.17.0-2ubuntu1) ... 180s Selecting previously unselected package libxcb-randr0:amd64. 180s Preparing to unpack .../128-libxcb-randr0_1.17.0-2ubuntu1_amd64.deb ... 180s Unpacking libxcb-randr0:amd64 (1.17.0-2ubuntu1) ... 180s Selecting previously unselected package libxcb-sync1:amd64. 180s Preparing to unpack .../129-libxcb-sync1_1.17.0-2ubuntu1_amd64.deb ... 180s Unpacking libxcb-sync1:amd64 (1.17.0-2ubuntu1) ... 180s Selecting previously unselected package libxcb-xfixes0:amd64. 180s Preparing to unpack .../130-libxcb-xfixes0_1.17.0-2ubuntu1_amd64.deb ... 180s Unpacking libxcb-xfixes0:amd64 (1.17.0-2ubuntu1) ... 180s Selecting previously unselected package libxshmfence1:amd64. 180s Preparing to unpack .../131-libxshmfence1_1.3.3-1build1_amd64.deb ... 180s Unpacking libxshmfence1:amd64 (1.3.3-1build1) ... 180s Selecting previously unselected package mesa-libgallium:amd64. 180s Preparing to unpack .../132-mesa-libgallium_25.3.3-1ubuntu1_amd64.deb ... 180s Unpacking mesa-libgallium:amd64 (25.3.3-1ubuntu1) ... 180s Selecting previously unselected package libgbm1:amd64. 180s Preparing to unpack .../133-libgbm1_25.3.3-1ubuntu1_amd64.deb ... 180s Unpacking libgbm1:amd64 (25.3.3-1ubuntu1) ... 180s Selecting previously unselected package libegl-mesa0:amd64. 180s Preparing to unpack .../134-libegl-mesa0_25.3.3-1ubuntu1_amd64.deb ... 180s Unpacking libegl-mesa0:amd64 (25.3.3-1ubuntu1) ... 180s Selecting previously unselected package libepoxy0:amd64. 180s Preparing to unpack .../135-libepoxy0_1.5.10-2build1_amd64.deb ... 180s Unpacking libepoxy0:amd64 (1.5.10-2build1) ... 180s Selecting previously unselected package libogg0:amd64. 180s Preparing to unpack .../136-libogg0_1.3.6-2_amd64.deb ... 180s Unpacking libogg0:amd64 (1.3.6-2) ... 180s Selecting previously unselected package libflac14:amd64. 180s Preparing to unpack .../137-libflac14_1.5.0+ds-5_amd64.deb ... 180s Unpacking libflac14:amd64 (1.5.0+ds-5) ... 180s Selecting previously unselected package libvulkan1:amd64. 180s Preparing to unpack .../138-libvulkan1_1.4.335.0-1_amd64.deb ... 180s Unpacking libvulkan1:amd64 (1.4.335.0-1) ... 180s Selecting previously unselected package libgl1-mesa-dri:amd64. 180s Preparing to unpack .../139-libgl1-mesa-dri_25.3.3-1ubuntu1_amd64.deb ... 180s Unpacking libgl1-mesa-dri:amd64 (25.3.3-1ubuntu1) ... 180s Selecting previously unselected package libglvnd0:amd64. 180s Preparing to unpack .../140-libglvnd0_1.7.0-3_amd64.deb ... 180s Unpacking libglvnd0:amd64 (1.7.0-3) ... 180s Selecting previously unselected package libxcb-glx0:amd64. 180s Preparing to unpack .../141-libxcb-glx0_1.17.0-2ubuntu1_amd64.deb ... 180s Unpacking libxcb-glx0:amd64 (1.17.0-2ubuntu1) ... 180s Selecting previously unselected package libxxf86vm1:amd64. 180s 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libpangoft2-1.0-0:amd64. 181s Preparing to unpack .../153-libpangoft2-1.0-0_1.57.0-1_amd64.deb ... 181s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ... 181s Selecting previously unselected package libpangocairo-1.0-0:amd64. 181s Preparing to unpack .../154-libpangocairo-1.0-0_1.57.0-1_amd64.deb ... 181s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ... 181s Selecting previously unselected package libwayland-cursor0:amd64. 181s Preparing to unpack .../155-libwayland-cursor0_1.24.0-2_amd64.deb ... 181s Unpacking libwayland-cursor0:amd64 (1.24.0-2) ... 181s Selecting previously unselected package libwayland-egl1:amd64. 181s Preparing to unpack .../156-libwayland-egl1_1.24.0-2_amd64.deb ... 181s Unpacking libwayland-egl1:amd64 (1.24.0-2) ... 181s Selecting previously unselected package libxcomposite1:amd64. 181s Preparing to unpack .../157-libxcomposite1_1%3a0.4.6-1build1_amd64.deb ... 181s Unpacking libxcomposite1:amd64 (1:0.4.6-1build1) ... 181s Selecting previously unselected package libxfixes3:amd64. 181s Preparing to unpack .../158-libxfixes3_1%3a6.0.0-2build2_amd64.deb ... 181s Unpacking libxfixes3:amd64 (1:6.0.0-2build2) ... 181s Selecting previously unselected package libxcursor1:amd64. 181s Preparing to unpack .../159-libxcursor1_1%3a1.2.3-1build1_amd64.deb ... 181s Unpacking libxcursor1:amd64 (1:1.2.3-1build1) ... 181s Selecting previously unselected package libxdamage1:amd64. 181s Preparing to unpack .../160-libxdamage1_1%3a1.1.7-1_amd64.deb ... 181s Unpacking libxdamage1:amd64 (1:1.1.7-1) ... 181s Selecting previously unselected package libxinerama1:amd64. 181s Preparing to unpack .../161-libxinerama1_2%3a1.1.4-3build2_amd64.deb ... 181s Unpacking libxinerama1:amd64 (2:1.1.4-3build2) ... 181s Selecting previously unselected package libxrandr2:amd64. 181s Preparing to unpack .../162-libxrandr2_2%3a1.5.4-1build1_amd64.deb ... 181s Unpacking libxrandr2:amd64 (2:1.5.4-1build1) ... 181s Selecting previously unselected package libgtk-3-common. 181s Preparing to unpack .../163-libgtk-3-common_3.24.50-1ubuntu2_all.deb ... 181s Unpacking libgtk-3-common (3.24.50-1ubuntu2) ... 181s Selecting previously unselected package libgtk-3-0t64:amd64. 181s Preparing to unpack .../164-libgtk-3-0t64_3.24.50-1ubuntu2_amd64.deb ... 181s Unpacking libgtk-3-0t64:amd64 (3.24.50-1ubuntu2) ... 181s Selecting previously unselected package libhdf5-hl-310:amd64. 181s Preparing to unpack .../165-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ... 181s Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 181s Selecting previously unselected package x11-common. 181s Preparing to unpack .../166-x11-common_1%3a7.7+24ubuntu1_all.deb ... 181s Unpacking x11-common (1:7.7+24ubuntu1) ... 181s Selecting previously unselected package libice6:amd64. 181s Preparing to unpack .../167-libice6_2%3a1.1.1-1build1_amd64.deb ... 181s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 181s Selecting previously unselected package libimagequant0:amd64. 181s Preparing to unpack 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libnetcdf22:amd64. 181s Preparing to unpack .../179-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 181s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 181s Selecting previously unselected package libnotify4:amd64. 181s Preparing to unpack .../180-libnotify4_0.8.8-1_amd64.deb ... 181s Unpacking libnotify4:amd64 (0.8.8-1) ... 181s Selecting previously unselected package libopus0:amd64. 181s Preparing to unpack .../181-libopus0_1.6.1-1_amd64.deb ... 181s Unpacking libopus0:amd64 (1.6.1-1) ... 181s Selecting previously unselected package libpcre2-16-0:amd64. 181s Preparing to unpack .../182-libpcre2-16-0_10.46-1_amd64.deb ... 181s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 181s Selecting previously unselected package libpcre2-32-0:amd64. 181s Preparing to unpack .../183-libpcre2-32-0_10.46-1_amd64.deb ... 181s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 181s Selecting previously unselected package libvorbis0a:amd64. 181s Preparing to unpack .../184-libvorbis0a_1.3.7-3build1_amd64.deb ... 181s Unpacking libvorbis0a:amd64 (1.3.7-3build1) ... 181s Selecting previously unselected package libvorbisenc2:amd64. 181s Preparing to unpack .../185-libvorbisenc2_1.3.7-3build1_amd64.deb ... 181s Unpacking libvorbisenc2:amd64 (1.3.7-3build1) ... 181s Selecting previously unselected package libsndfile1:amd64. 181s Preparing to unpack .../186-libsndfile1_1.2.2-4_amd64.deb ... 181s Unpacking libsndfile1:amd64 (1.2.2-4) ... 181s Selecting previously unselected package libpulse0:amd64. 181s Preparing to unpack .../187-libpulse0_1%3a17.0+dfsg1-2ubuntu4_amd64.deb ... 181s Unpacking libpulse0:amd64 (1:17.0+dfsg1-2ubuntu4) ... 181s Selecting previously unselected package libpython3.14-stdlib:amd64. 181s Preparing to unpack .../188-libpython3.14-stdlib_3.14.2-1_amd64.deb ... 181s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 181s Selecting previously unselected package libqhull-r8.0:amd64. 181s Preparing to unpack .../189-libqhull-r8.0_2020.2-8_amd64.deb ... 181s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 181s Selecting previously unselected package libqt5core5t64:amd64. 181s Preparing to unpack .../190-libqt5core5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 181s Unpacking libqt5core5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 181s Selecting previously unselected package libqt5dbus5t64:amd64. 181s Preparing to unpack .../191-libqt5dbus5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 181s Unpacking libqt5dbus5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 181s Selecting previously unselected package libegl1:amd64. 181s Preparing to unpack .../192-libegl1_1.7.0-3_amd64.deb ... 181s Unpacking libegl1:amd64 (1.7.0-3) ... 181s Selecting previously unselected package libqt5network5t64:amd64. 181s Preparing to unpack .../193-libqt5network5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 181s Unpacking libqt5network5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 181s Selecting previously unselected package libsm6:amd64. 181s Preparing to unpack .../194-libsm6_2%3a1.2.6-1_amd64.deb ... 181s Unpacking libsm6:amd64 (2:1.2.6-1) ... 181s Selecting previously unselected package libxcb-icccm4:amd64. 181s Preparing to unpack .../195-libxcb-icccm4_0.4.2-1build1_amd64.deb ... 181s Unpacking libxcb-icccm4:amd64 (0.4.2-1build1) ... 181s Selecting previously unselected package libxcb-util1:amd64. 181s Preparing to unpack .../196-libxcb-util1_0.4.1-1build1_amd64.deb ... 181s Unpacking libxcb-util1:amd64 (0.4.1-1build1) ... 181s Selecting previously unselected package libxcb-image0:amd64. 181s Preparing to unpack .../197-libxcb-image0_0.4.0-2build2_amd64.deb ... 181s Unpacking libxcb-image0:amd64 (0.4.0-2build2) ... 181s Selecting previously unselected package libxcb-keysyms1:amd64. 181s Preparing to unpack .../198-libxcb-keysyms1_0.4.1-1build1_amd64.deb ... 181s Unpacking libxcb-keysyms1:amd64 (0.4.1-1build1) ... 181s Selecting previously unselected package libxcb-render-util0:amd64. 181s Preparing to unpack .../199-libxcb-render-util0_0.3.10-1build1_amd64.deb ... 181s Unpacking libxcb-render-util0:amd64 (0.3.10-1build1) ... 181s Selecting previously unselected package libxcb-shape0:amd64. 181s Preparing to unpack .../200-libxcb-shape0_1.17.0-2ubuntu1_amd64.deb ... 181s Unpacking libxcb-shape0:amd64 (1.17.0-2ubuntu1) ... 181s Selecting previously unselected package libxcb-xinerama0:amd64. 181s Preparing to unpack .../201-libxcb-xinerama0_1.17.0-2ubuntu1_amd64.deb ... 181s Unpacking libxcb-xinerama0:amd64 (1.17.0-2ubuntu1) ... 181s Selecting previously unselected package libxcb-xinput0:amd64. 181s Preparing to unpack .../202-libxcb-xinput0_1.17.0-2ubuntu1_amd64.deb ... 181s Unpacking libxcb-xinput0:amd64 (1.17.0-2ubuntu1) ... 181s Selecting previously unselected package libxcb-xkb1:amd64. 181s Preparing to unpack .../203-libxcb-xkb1_1.17.0-2ubuntu1_amd64.deb ... 181s Unpacking libxcb-xkb1:amd64 (1.17.0-2ubuntu1) ... 181s Selecting previously unselected package libxkbcommon-x11-0:amd64. 181s Preparing to unpack .../204-libxkbcommon-x11-0_1.12.3-1_amd64.deb ... 181s Unpacking libxkbcommon-x11-0:amd64 (1.12.3-1) ... 181s Selecting previously unselected package libqt5gui5t64:amd64. 181s Preparing to unpack .../205-libqt5gui5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 181s Unpacking libqt5gui5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 182s Selecting previously unselected package libqt5widgets5t64:amd64. 182s Preparing to unpack .../206-libqt5widgets5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 182s Unpacking libqt5widgets5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 182s Selecting previously unselected package libqt5xml5t64:amd64. 182s Preparing to unpack .../207-libqt5xml5t64_5.15.18+dfsg-1ubuntu1_amd64.deb ... 182s Unpacking libqt5xml5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 182s Selecting previously unselected package libqt5designer5:amd64. 182s Preparing to unpack .../208-libqt5designer5_5.15.18-1_amd64.deb ... 182s Unpacking libqt5designer5:amd64 (5.15.18-1) ... 182s Selecting previously unselected package libqt5sql5t64:amd64. 182s Preparing to unpack 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previously unselected package libraqm0:amd64. 182s Preparing to unpack .../214-libraqm0_0.10.3-1_amd64.deb ... 182s Unpacking libraqm0:amd64 (0.10.3-1) ... 182s Selecting previously unselected package libsamplerate0:amd64. 182s Preparing to unpack .../215-libsamplerate0_0.2.2-4build2_amd64.deb ... 182s Unpacking libsamplerate0:amd64 (0.2.2-4build2) ... 182s Selecting previously unselected package libxss1:amd64. 182s Preparing to unpack .../216-libxss1_1%3a1.2.3-1build4_amd64.deb ... 182s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 182s Selecting previously unselected package libsdl2-classic:amd64. 182s Preparing to unpack .../217-libsdl2-classic_2.32.10+dfsg-6_amd64.deb ... 182s Unpacking libsdl2-classic:amd64 (2.32.10+dfsg-6) ... 182s Selecting previously unselected package libsdl2-2.0-0:amd64. 182s Preparing to unpack .../218-libsdl2-2.0-0_2.32.10+dfsg-6_amd64.deb ... 182s Unpacking libsdl2-2.0-0:amd64 (2.32.10+dfsg-6) ... 182s Selecting previously unselected package libssm2:amd64. 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182s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 182s Selecting previously unselected package libzopfli1. 182s Preparing to unpack .../230-libzopfli1_1.0.3-3build1_amd64.deb ... 182s Unpacking libzopfli1 (1.0.3-3build1) ... 182s Selecting previously unselected package pymol-data. 182s Preparing to unpack .../231-pymol-data_3.1.0+dfsg-1build2_all.deb ... 182s Unpacking pymol-data (3.1.0+dfsg-1build2) ... 182s Selecting previously unselected package python-matplotlib-data. 182s Preparing to unpack .../232-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 182s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 182s Selecting previously unselected package python3.14. 182s Preparing to unpack .../233-python3.14_3.14.2-1_amd64.deb ... 182s Unpacking python3.14 (3.14.2-1) ... 182s Selecting previously unselected package python3-all. 182s Preparing to unpack .../234-python3-all_3.13.9-3_amd64.deb ... 182s Unpacking python3-all (3.13.9-3) ... 182s Selecting previously unselected package python3-brotli. 182s Preparing to unpack .../235-python3-brotli_1.1.0-2build6_amd64.deb ... 182s Unpacking python3-brotli (1.1.0-2build6) ... 182s Selecting previously unselected package python3-legacy-cgi. 182s Preparing to unpack .../236-python3-legacy-cgi_2.6.4-2_all.deb ... 182s Unpacking python3-legacy-cgi (2.6.4-2) ... 182s Selecting previously unselected package python3-pycbf. 182s Preparing to unpack .../237-python3-pycbf_0.9.7+dfsg1-5.1_amd64.deb ... 182s Unpacking python3-pycbf (0.9.7+dfsg1-5.1) ... 182s Selecting previously unselected package python3-h5py-serial. 182s Preparing to unpack .../238-python3-h5py-serial_3.15.1-4_amd64.deb ... 182s Unpacking python3-h5py-serial (3.15.1-4) ... 182s Selecting previously unselected package python3-h5py. 182s Preparing to unpack .../239-python3-h5py_3.15.1-4_all.deb ... 182s Unpacking python3-h5py (3.15.1-4) ... 182s Selecting previously unselected package python3-hdf5plugin. 182s Preparing to unpack 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previously unselected package python3-pil.imagetk:amd64. 182s Preparing to unpack .../246-python3-pil.imagetk_12.0.0-1ubuntu1_amd64.deb ... 182s Unpacking python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 182s Selecting previously unselected package python3-contourpy. 182s Preparing to unpack .../247-python3-contourpy_1.3.3-1_amd64.deb ... 182s Unpacking python3-contourpy (1.3.3-1) ... 182s Selecting previously unselected package python3-cycler. 182s Preparing to unpack .../248-python3-cycler_0.12.1-2_all.deb ... 182s Unpacking python3-cycler (0.12.1-2) ... 182s Selecting previously unselected package python3-lxml:amd64. 182s Preparing to unpack .../249-python3-lxml_6.0.2-1_amd64.deb ... 182s Unpacking python3-lxml:amd64 (6.0.2-1) ... 182s Selecting previously unselected package python3-lz4. 182s Preparing to unpack .../250-python3-lz4_4.4.5+dfsg-1_amd64.deb ... 182s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 182s Selecting previously unselected package python3-decorator. 182s Preparing to 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187s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... 187s Setting up python3.14-minimal (3.14.2-1) ... 188s Setting up libcc1-0:amd64 (15.2.0-12ubuntu1) ... 188s Setting up python3-procrunner (2.3.3-2) ... 188s Setting up liblsan0:amd64 (15.2.0-12ubuntu1) ... 188s Setting up libmp3lame0:amd64 (3.100-6build2) ... 188s Setting up libsz2:amd64 (1.1.5-1) ... 188s Setting up libitm1:amd64 (15.2.0-12ubuntu1) ... 188s Setting up libvorbisenc2:amd64 (1.3.7-3build1) ... 188s Setting up libann-cctbx-dev (1.1.2+doc-9build2) ... 188s Setting up libwacom-common (2.16.1-1) ... 188s Setting up libwayland-client0:amd64 (1.24.0-2) ... 188s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 188s Setting up python3-sympy (1.14.0-2) ... 195s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 195s return p.returncode 195s Setting up libice6:amd64 (2:1.1.1-1build1) ... 195s Setting up mesa-libgallium:amd64 (25.3.3-1ubuntu1) ... 195s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ... 195s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 195s Setting up libqt5dbus5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 195s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 195s Setting up libssm2:amd64 (1.4.0-2build2) ... 195s Setting up libatk1.0-0t64:amd64 (2.59.0-1) ... 195s Setting up libgbm1:amd64 (25.3.3-1ubuntu1) ... 195s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 195s Setting up libwacom9:amd64 (2.16.1-1) ... 195s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 195s Setting up python3-pytest (9.0.2-2) ... 196s Setting up libxtst6:amd64 (2:1.2.5-1build1) ... 196s Setting up libwebpdemux2:amd64 (1.5.0-0.1build1) ... 196s Setting up libxcursor1:amd64 (1:1.2.3-1build1) ... 196s Setting up libgl1-mesa-dri:amd64 (25.3.3-1ubuntu1) ... 196s Setting up libqt5network5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 196s Setting up libavahi-common3:amd64 (0.8-17ubuntu2) ... 196s Setting up libqt5xml5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 196s Setting up dconf-service (0.49.0-4) ... 196s Setting up libqt5test5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 196s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 196s Setting up libccp4f0t64:amd64 (8.0.0-5build1) ... 196s Setting up python3-zopfli (0.4.0-1) ... 196s Setting up libinput-bin (1.30.1-1) ... 196s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 196s Setting up python3-pint (0.25.2-2) ... 196s Setting up libthai0:amd64 (0.1.30-1) ... 196s Setting up libegl-mesa0:amd64 (25.3.3-1ubuntu1) ... 196s Setting up libraqm0:amd64 (0.10.3-1) ... 196s Setting up python3-numpy (1:2.3.5+ds-3) ... 198s Setting up libhdf5-310:amd64 (1.14.6+repack-2) ... 199s Setting up cpp-15 (15.2.0-12ubuntu1) ... 199s Setting up python3-lxml:amd64 (6.0.2-1) ... 199s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 199s Setting up libwayland-cursor0:amd64 (1.24.0-2) ... 199s Setting up libegl1:amd64 (1.7.0-3) ... 199s Setting up libdecor-0-0:amd64 (0.2.5-1) ... 199s Setting up libc6-dev:amd64 (2.42-2ubuntu4) ... 199s Setting up libgdk-pixbuf-2.0-0:amd64 (2.44.4+dfsg-1) ... 199s Setting up python3-contourpy (1.3.3-1) ... 199s Setting up libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 199s Setting up libsndfile1:amd64 (1.2.2-4) ... 199s Setting up python3.14 (3.14.2-1) ... 199s Setting up libsm6:amd64 (2:1.2.6-1) ... 199s Setting up libicu-dev:amd64 (78.2-1ubuntu1) ... 199s Setting up libavahi-client3:amd64 (0.8-17ubuntu2) ... 199s Setting up python3-mrcfile (1.5.4-2) ... 199s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 199s Setting up libatk-bridge2.0-0t64:amd64 (2.59.0-1) ... 199s Setting up libinput10:amd64 (1.30.1-1) ... 199s Setting up gtk-update-icon-cache (4.20.3+ds-3) ... 199s Setting up libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 199s Setting up fontconfig (2.17.1-3ubuntu1) ... 201s Regenerating fonts cache... done. 201s Setting up libxft2:amd64 (2.3.6-1build2) ... 201s Setting up libglx-mesa0:amd64 (25.3.3-1ubuntu1) ... 201s Setting up python3-scipy (1.16.3-4) ... 206s Setting up libcbf1t64:amd64 (0.9.7+dfsg1-5.1) ... 206s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 206s Setting up libglx0:amd64 (1.7.0-3) ... 206s Setting up dconf-gsettings-backend:amd64 (0.49.0-4) ... 206s Setting up libccp4-dev:amd64 (8.0.0-5build1) ... 206s Setting up libpulse0:amd64 (1:17.0+dfsg1-2ubuntu4) ... 206s Setting up libtk8.6:amd64 (8.6.17-1) ... 206s Setting up libpango-1.0-0:amd64 (1.57.0-1) ... 206s Setting up libnetcdf22:amd64 (1:4.9.3-1build1) ... 206s Setting up python3-h5py-serial (3.15.1-4) ... 206s Setting up python3-all (3.13.9-3) ... 206s Setting up libcairo2:amd64 (1.18.4-3) ... 206s Setting up python3.13-tk (3.13.11-1) ... 206s Setting up python3-pil:amd64 (12.0.0-1ubuntu1) ... 207s Setting up gcc-15 (15.2.0-12ubuntu1) ... 207s Setting up libgl1:amd64 (1.7.0-3) ... 207s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 207s Setting up libexpat1-dev:amd64 (2.7.4-1) ... 207s Setting up adwaita-icon-theme (49.0-1) ... 207s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 207s Setting up libglut3.12:amd64 (3.4.0-6) ... 207s Setting up libnotify4:amd64 (0.8.8-1) ... 207s Setting up python3-pycbf (0.9.7+dfsg1-5.1) ... 207s Setting up python3-h5py (3.15.1-4) ... 207s Setting up libglew2.2:amd64 (2.2.0-4build2) ... 207s Setting up python3-hdf5plugin (5.1.0-1) ... 207s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 207s Setting up cpp (4:15.2.0-4ubuntu1) ... 207s Setting up libcairo-gobject2:amd64 (1.18.4-3) ... 207s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ... 207s Setting up python3-nxmx (0.0.4-1build1) ... 207s Setting up libcups2t64:amd64 (2.4.16-1ubuntu1) ... 207s Setting up libgtk-3-common (3.24.50-1ubuntu2) ... 207s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ... 207s Setting up libcctbx0 (2025.12+ds2+~3.26.0+ds1-3) ... 207s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 207s Setting up python3.14-tk (3.14.2-1) ... 207s Setting up libsdl2-classic:amd64 (2.32.10+dfsg-6) ... 207s Setting up libboost1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 207s Setting up python3-tk (3.13.9-3) ... 207s Setting up python3-opengl (3.1.10+dfsg-1) ... 212s Setting up gcc (4:15.2.0-4ubuntu1) ... 212s Setting up libqt5gui5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 212s Setting up python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 212s Setting up libboost-container1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 212s Setting up libpython3.13-dev:amd64 (3.13.11-1) ... 212s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 212s Setting up libsdl2-2.0-0:amd64 (2.32.10+dfsg-6) ... 212s Setting up g++-15 (15.2.0-12ubuntu1) ... 212s Setting up libboost-serialization1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 212s Setting up libboost-regex1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 212s Setting up libpython3-dev:amd64 (3.13.9-3) ... 212s Setting up libqt5widgets5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 212s Setting up libboost-test1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 212s Setting up python3.13-dev (3.13.11-1) ... 212s Setting up libqt5help5:amd64 (5.15.18-1) ... 212s Setting up python3-dev (3.13.9-3) ... 212s Setting up g++ (4:15.2.0-4ubuntu1) ... 212s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 212s Setting up libqt5opengl5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 212s Setting up libqt5printsupport5t64:amd64 (5.15.18+dfsg-1ubuntu1) ... 212s Setting up libboost-graph1.88-dev:amd64 (1.88.0-1.4ubuntu3) ... 212s Setting up libqt5designer5:amd64 (5.15.18-1) ... 212s Setting up libboost-python1.88-dev (1.88.0-1.4ubuntu3) ... 212s Setting up python3-pyqt5 (5.15.11+dfsg-3build2) ... 212s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-3build2) ... 212s Setting up libboost-python-dev (1.88.0.0ubuntu3) ... 212s Setting up python3-pymol (3.1.0+dfsg-1build2) ... 212s Setting up libcctbx-dev (2025.12+ds2+~3.26.0+ds1-3) ... 212s Setting up python3-fonttools (4.61.1-3) ... 212s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 212s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 213s Processing triggers for libc-bin (2.42-2ubuntu4) ... 213s Processing triggers for systemd (259-1ubuntu3) ... 213s Processing triggers for man-db (2.13.1-1) ... 214s Processing triggers for libglib2.0-0t64:amd64 (2.86.3-4) ... 214s Setting up libgtk-3-0t64:amd64 (3.24.50-1ubuntu2) ... 214s Processing triggers for udev (259-1ubuntu3) ... 214s Setting up libwxgtk3.2-1t64:amd64 (3.2.9+dfsg-1) ... 214s Setting up libwxgtk-gl3.2-1t64:amd64 (3.2.9+dfsg-1) ... 214s Setting up python3-wxgtk4.0 (4.2.4+dfsg-1) ... 216s Setting up python3-cctbx (2025.12+ds2+~3.26.0+ds1-3) ... 224s /usr/lib/python3/dist-packages/cootbx/interactive_edit.py:48: SyntaxWarning: 'return' in a 'finally' block 224s return new_text 225s /usr/lib/python3/dist-packages/libtbx/utils.py:2433: SyntaxWarning: 'return' in a 'finally' block 225s return new_text 225s /usr/lib/python3/dist-packages/libtbx/utils.py:2472: SyntaxWarning: 'return' in a 'finally' block 225s return new_text 293s Processing triggers for libc-bin (2.42-2ubuntu4) ... 293s autopkgtest [02:54:32]: test cctbx: [----------------------- 294s Testing cctbx with python3.14: 294s Running 553 tests on 2 processors: 294s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py" 294s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py" 294s "/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy" 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py" 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py" 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py" 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py" 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py" 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py" 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py" 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py" 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/math/boost_python/tst_math.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_targets_fd.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_N_fold_rot.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_chemical_elements.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_henke.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_icsd_radii.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_covalent_radii.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_neutron.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_sasaki.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_tiny_pse.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_wavelengths.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_motif.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_math_module.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_coordination_sequences.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem_2.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_pickling.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_epsilon.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_hl.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/run_shelx76.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/observations/tst_observations.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_box.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_create_models_or_maps.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/merging/brehm_diederichs.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/multipolar/regression/tst_multipolar.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications_rm.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wavelength_units.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py" 294s libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py" 294s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_ext.py" 294s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_equivalence.py" 294s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_read.py" 294s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout.py" 294s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_show_calls.py" 294s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_command_line.py" 294s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py" 294s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout_compile.py" stop 294s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_io.py" 294s libtbx.python "/usr/lib/python3/dist-packages/gltbx/tst_ellipsoids.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_wildcard.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_parser.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_cells.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_2.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_2.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_3.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_4.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_cif.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_patterson.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_restraints_merge.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ranges.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_poscar.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/kriber/tst_strudat.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_geometry.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_crystal_symmetry_builder.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_lex_parse_build.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_restraints.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_parser.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_citations.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model_builder.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_lex_parse_build.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_hklf.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_writer.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_fvar_encoding.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_pdb.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_tls.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/hybrid_36.py" exercise 294s "/usr/lib/cctbx/python3.14/iotbx/pdb/hybrid_36_fem" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_ext.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_aa_names.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_rna_dna_names.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_sheet.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation_long.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/secondary_structure.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection_string.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_utils.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure_2.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/remediation/tst_remediator.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_to_map_simple.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_examples.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/space_group_symbols.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/tst_cns.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_merge.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/no_merge_original_index.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ccp4_map/tst.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_ext.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_dano.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_miller_dict.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_unmerged.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/tst_mtz_free_flipper.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_utils.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_adsc.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_detectors.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xplor/tst_xplormap.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phases.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_plots.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_csv_utils.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_bioinformatics.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_input.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_multimodel.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_add_conformations.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_symmetry.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reindex.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_editor.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_fasta.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_link_records.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_merging_statistics.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_map_coefficients.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xparm.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xds_inp.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_spots_xds.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_cif.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py" 294s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py" 294s libtbx.python 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"/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike_mom.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/sieve_of_eratosthenes.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/besselk.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/scale_curves.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_peak.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_clustering.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_g_function.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_angle_derivative.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_periodogram.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_tetrahedron.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_undirected_graph.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_so3_lie_algebra.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/minpack/tst.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_ext.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_curvatures.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py" 294s "/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgsb/boost_python/tst_lbfgsb.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/fftpack/boost_python/tst_fftpack.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_grid.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_array_loops.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/principal_axes_of_inertia.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_recipe.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/chebyshev_lsq_example.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/immoptibox_ports.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/rigid_body_refinement_core.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/minimizer_comparisons.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_utils.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_rigidity.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/test_cases_tardy_pdb.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_basic.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_tardy.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/tst.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_singular.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_molecules.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_sparse.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/iso_surface/tst_iso_surface.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/simplex.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/differential_evolution.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/golden_section_search.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_minimizer_lbfgs_general.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/direct_search_simulated_annealing.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/random/tests/tst_random.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/test_problems.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/glmtbx/tests/tst.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py" 294s libtbx.python "/usr/lib/python3/dist-packages/scitbx/suffixtree/test/tst_single.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py" --fix_random_seeds 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py" --fix_seed --on=E "hall: P 1" "hall: P 3" "hall: -P 2ybc" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py" --fix_random_seeds 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py" 294s "/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py" 294s "/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py" 294s "/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=naive 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=levenberg-marquardt 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py" --verbose --scatterers=5 --resolution=0.2 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py" 294s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_least_squares.py" 294s libtbx.python "/usr/lib/python3/dist-packages/rstbx/dps_core/tst_iotbx_converter.py" 294s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_predict.py" 294s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_ewald_sphere.py" 294s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_partial_derivatives.py" 294s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py" 294s libtbx.python "/usr/lib/python3/dist-packages/rstbx/sublattice_support/tst_sublattice.py" 294s libtbx.python -c "from rstbx.run_tests import run; run()" 294s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/core_toolbox/boost_python/tst_small_image.py" 294s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/diffraction/geometry.py" 294s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/math_support/sphere_formulae.py" 294s 294s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py" [OK] 0.1s 294s Time: 0.13 294s Return code: 0 294s OKs: 1 294s Standard out: 294s OK 294s "/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy" [OK] 0.0s 294s Time: 0.00 294s Return code: 0 294s OKs: 1 294s Standard out: 294s OK 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py" [OK] 0.0s 294s Time: 0.04 294s Return code: 0 294s OKs: 1 294s Standard out: 294s OK 294s Standard error: 294s show_stack(1): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(9) run 294s show_stack(2): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(15) 294s libc backtrace (20 frames, most recent call last): 294s /usr/bin/python3.13(_start+0x25) [0x6a01f5] 294s /usr/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x88) [0x7d4a5482a628] 294s /usr/lib/x86_64-linux-gnu/libc.so.6(+0x2a575) [0x7d4a5482a575] 294s /usr/bin/python3.13(Py_BytesMain+0x34) [0x6a0e74] 294s /usr/bin/python3.13(Py_RunMain+0x342) [0x6d3ac2] 294s /usr/bin/python3.13() [0x6d4945] 294s /usr/bin/python3.13() [0x6d4b08] 294s /usr/bin/python3.13() [0x6d5105] 294s /usr/bin/python3.13() [0x6c38b1] 294s /usr/bin/python3.13() [0x6c6a45] 294s /usr/bin/python3.13(PyEval_EvalCode+0xc3) [0x56f733] 294s /usr/bin/python3.13(_PyEval_EvalFrameDefault+0x26c9) [0x575d49] 294s /usr/bin/python3.13(_PyObject_MakeTpCall+0x28d) [0x55928d] 294s /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(+0x2439e) [0x7d4a5407b39e] 294s /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(boost::python::handle_exception_impl(boost::function_n)+0x6b) [0x7d4a5407b2ab] 294s /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(+0x270e4) [0x7d4a5407e0e4] 294s /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.88.0(boost::python::objects::function::call(_object*, _object*) const+0xe6) [0x7d4a5407dcb6] 294s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-x86_64-linux-gnu.so(+0x21480) [0x7d4a540b6480] 294s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-x86_64-linux-gnu.so(+0x20fa8) [0x7d4a540b5fa8] 294s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-x86_64-linux-gnu.so(+0x16477) [0x7d4a540ab477] 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py" [OK] 0.1s 294s Time: 0.07 294s Return code: 0 294s OKs: 1 294s Standard out: 294s OK 294s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py" [OK] 0.3s 294s Time: 0.29 294s Return code: 0 294s OKs: 1 294s Standard out: 294s OK 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py" [OK] 0.1s 294s Time: 0.06 294s Return code: 0 294s OKs: 1 294s Standard out: 294s exercise_wstring: 294s OK 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py" [OK] 0.0s 294s Time: 0.04 294s Return code: 0 294s OKs: 1 294s Standard out: 294s OK 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py" [OK] 0.1s 294s Time: 0.06 294s Return code: 0 294s OKs: 1 294s Standard out: 294s OK 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py" [OK] 0.0s 294s Time: 0.04 294s Return code: 0 294s OKs: 1 294s Standard out: 294s OK 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py" [OK] 0.1s 294s Time: 0.08 294s Return code: 0 294s OKs: 1 294s Standard out: 294s OK 294s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py" [OK] 0.0s 294s Time: 0.04 294s Return code: 0 294s OKs: 1 294s Standard out: 294s OK 296s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 296s 1 296s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 296s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py" [EXPECTED FAIL] 1.4s 296s Time: 1.36 296s Return code: 1 296s OKs: 0 296s Standard error: 296s Traceback (most recent call last): 296s File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 230, in 296s run(sys.argv[1:]) 296s ~~~^^^^^^^^^^^^^^ 296s File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 218, in run 296s stringio_test_case().run() 296s ~~~~~~~~~~~~~~~~~~~~~~~~^^ 296s File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 40, in run 296s self.exercise_read() 296s ~~~~~~~~~~~~~~~~~~^^ 296s File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 49, in exercise_read 296s words = ext.test_read(streambuf(self.file_object), "read") 296s ValueError: The method 'read' of the Python file object did not return a string. 296s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" [OK] 0.6s 296s Time: 0.56 296s Return code: 0 296s OKs: 0 296s Standard out: 296s 296s remove_fraction: 0.2 296s 296s data incompleteness: random ------------------------------ 296s number of all data: 1054 296s number of incomplete data: 829 296s start CC(exact_map, poor_map): 0.9027390804761674 296s start CC(exact_map, filled_map)1: 0.9941635682335426 296s start CC(exact_map, filled_map)2: 0.9942153723077464 296s 296s data incompleteness: smallest ------------------------------ 296s number of all data: 1054 296s number of incomplete data: 844 296s start CC(exact_map, poor_map): 0.9980218160516707 296s start CC(exact_map, filled_map)1: 0.9999748740662823 296s start CC(exact_map, filled_map)2: 0.9999968130612383 296s 296s data incompleteness: highest ------------------------------ 296s number of all data: 1054 296s number of incomplete data: 844 296s start CC(exact_map, poor_map): 0.3818786913107765 296s start CC(exact_map, filled_map)1: 0.9971830786189367 296s start CC(exact_map, filled_map)2: 0.9959849263224512 296s 296s remove_fraction: 0.5 296s 296s data incompleteness: random ------------------------------ 296s number of all data: 1054 296s number of incomplete data: 533 296s start CC(exact_map, poor_map): 0.7391417144354797 296s start CC(exact_map, filled_map)1: 0.9060118869919956 296s start CC(exact_map, filled_map)2: 0.9911718008371205 296s 296s data incompleteness: smallest ------------------------------ 296s number of all data: 1054 296s number of incomplete data: 527 296s start CC(exact_map, poor_map): 0.9880878743856928 296s start CC(exact_map, filled_map)1: 0.9055971624641237 296s start CC(exact_map, filled_map)2: 0.9997105797127656 296s 296s data incompleteness: highest ------------------------------ 296s number of all data: 1054 296s number of incomplete data: 527 296s start CC(exact_map, poor_map): 0.1538907160682784 296s start CC(exact_map, filled_map)1: 0.7754322280259367 296s start CC(exact_map, filled_map)2: 0.9987051173664472 311s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" [OK] 16.2s 311s Time: 16.20 311s Return code: 0 311s OKs: 0 311s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" [OK] 0.3s 311s Time: 0.32 311s Return code: 0 311s OKs: 1 311s Standard out: 311s OK 311s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py" [OK] 0.4s 311s Time: 0.37 311s Return code: 0 311s OKs: 1 311s Standard out: 311s OK 320s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" [OK] 8.3s 320s Time: 8.35 320s Return code: 0 320s OKs: 0 320s Standard out: 320s (14.5791, 18.9529, 24.7845, 83, 109, 129) 320s cc_map_data_from_shifted_xrs_shifted_map_data 0.9999563039408415 320s ************************* 320s P 1 320s (14.5791, 18.9529, 24.7845, 83, 109, 129) 320s datat in: 3097 320s data left: 1627 320s ************************* 320s P -1 320s (18.3685, 23.8791, 31.2265, 83, 109, 129) 320s datat in: 6205 320s data left: 3707 320s ************************* 320s P 1 2 1 320s (16.8518, 21.9073, 28.648, 90, 109, 90) 320s datat in: 3267 320s data left: 1651 320s ************************* 320s C 1 2/c 1 320s (26.7505, 34.7757, 45.4759, 90, 109, 90) 320s datat in: 6209 320s data left: 1734 320s ************************* 320s P 2 2 2 320s (20.8391, 27.0908, 35.4265, 90, 90, 90) 320s datat in: 3510 320s data left: 1980 320s ************************* 320s I m m a 320s (33.08, 43.004, 56.2361, 90, 90, 90) 320s datat in: 6585 320s data left: 6341 320s ************************* 320s P 4 320s (22.7437, 22.7437, 38.6642, 90, 90, 90) 320s datat in: 3214 320s data left: 821 320s ************************* 320s P 41 320s (22.7437, 22.7437, 38.6642, 90, 90, 90) 320s datat in: 3195 320s data left: 2815 320s ************************* 320s I 41/a c d :2 320s (45.4873, 45.4873, 77.3284, 90, 90, 90) 320s datat in: 6220 320s data left: 4633 320s ************************* 320s P 3 320s (21.6789, 21.6789, 36.8541, 90, 90, 120) 320s datat in: 3123 320s data left: 231 320s ************************* 320s P 31 320s (21.6789, 21.6789, 36.8541, 90, 90, 120) 320s datat in: 3107 320s data left: 2647 320s ************************* 320s P 3 1 m 320s (27.3137, 27.3137, 46.4333, 90, 90, 120) 320s datat in: 3341 320s data left: 1041 320s ************************* 320s R -3 c :H 320s (49.6323, 49.6323, 84.3749, 90, 90, 120) 320s datat in: 6214 320s data left: 504 320s ************************* 320s P 6 320s (27.3137, 27.3137, 46.4333, 90, 90, 120) 320s datat in: 3204 320s data left: 2272 320s ************************* 320s P 63/m m c 320s (43.3578, 43.3578, 73.7083, 90, 90, 120) 320s datat in: 6794 320s data left: 405 320s ************************* 320s P 2 3 320s (39.1487, 39.1487, 39.1487, 90, 90, 90) 320s datat in: 3389 320s data left: 694 320s ************************* 320s I a -3 d 320s (78.2974, 78.2974, 78.2974, 90, 90, 90) 320s datat in: 6220 320s data left: 3933 320s ************************* 320s I 4/m c m (a+b-1/6,-a+b,c+1/4) 320s (64.3288, 64.3288, 77.3284, 90, 90, 90) 320s datat in: 6535 320s data left: 5391 320s ************************* 320s u+s,u,s: 8.28 8.15 0.13 320s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" [OK] 0.1s 320s Time: 0.11 320s Return code: 0 320s OKs: 1 320s Standard out: 320s OK 320s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 [OK] 0.5s 320s Time: 0.45 320s Return code: 0 320s OKs: 0 320s Standard out: 320s general_positions_only = True 320s shake_sites_rmsd = 0.5 320s shake_adp_spread = 20 320s show_distances_threshold = 0 320s bulk_solvent_correction = False 320s target { 320s type = *ls cc r1 320s obs_type = *F I 320s weighting_scheme = *unit shelxl_wght shelxl_wght_once 320s } 320s iteration_limit = 50 320s grads_mean_sq_threshold = 1e-06 320s use_classic_lbfgs = False 320s use_lbfgs_emulation = False 320s use_curvs = True 320s approx_quad_limit_factor = 1.0 320s bfgs_estimate_limit_factor = 1.0 320s use_line_search = False 320s use_gradient_flips = True 320s try_approx_curvs = False 320s show_dests = False 320s show_distances_to_reference_structure = False 320s f_calc_options { 320s algorithm = *direct fft 320s cos_sin_table = False 320s } 320s plot_samples { 320s stages = initial final 320s ix = None 320s ix_auto = all random 320s ix_random { 320s samples_each_scattering_type = 3 320s random_seed = 0 320s } 320s target { 320s type = *Auto ls cc r1 ml 320s obs_type = *Auto F I 320s weighting_scheme = *Auto unit shelxl_wght shelxl_wght_once 320s } 320s x_radius = 5 320s x_steps = 100 320s u_min = -0.05 320s u_max = 0.45 320s u_steps = 100 320s file_prefix = None 320s pyplot = *gui pdf 320s } 320s 320s P 31 320s Ideal structure: 320s Number of scatterers: 3 320s At special positions: 0 320s Unit cell: (10.693, 10.693, 18.178, 90, 90, 120) 320s Space group: P 31 (No. 144) 320s Label, Scattering, Multiplicity, Coordinates, Occupancy, Uiso, Ustar as Uiso 320s N1 N 3 ( 0.8444 0.7580 0.4206) 1.00 0.1750 [ - ] 320s C2 C 3 ( 0.2589 0.5113 0.4049) 1.00 0.2724 [ - ] 320s O3 O 3 ( 0.7838 0.3033 0.4766) 1.00 0.1514 [ - ] 320s 320s Modified structure: 320s Number of scatterers: 3 320s At special positions: 0 320s Unit cell: (10.693, 10.693, 18.178, 90, 90, 120) 320s Space group: P 31 (No. 144) 320s Label, Scattering, Multiplicity, Coordinates, Occupancy, Uiso, Ustar as Uiso 320s N1 N 3 ( 0.8485 0.7815 0.3934) 1.00 0.2297 [ - ] 320s C2 C 3 ( 0.2218 0.4736 0.3828) 1.00 0.0838 [ - ] 320s O3 O 3 ( 0.7466 0.2868 0.4710) 1.00 0.2151 [ - ] 320s 320s rms difference: 0.49999999999999994 320s 320s cRMSD aRMSD uRMSD 320s 0.500 0.373 0.119 r1=0.4555 320s Number of variables: 12 320s 1: 0.422 0.287 0.101 f=9.30e-02 |g|=5.62e-01 r1=0.3613 aq(6, -2) 320s 2: 0.366 0.239 0.065 f=5.94e-02 |g|=6.84e-01 r1=0.3170 aq(5, 5) 320s 3: 0.308 0.167 0.042 f=2.93e-02 |g|=2.25e-01 r1=0.2170 aq(3, 2) 320s 4: 0.283 0.098 0.008 f=8.12e-03 |g|=9.46e-02 r1=0.1157 aq(5, 3) 320s 5: 0.288 0.050 0.005 f=1.96e-03 |g|=2.81e-02 r1=0.0548 aq(5, 5) 320s 6: 0.278 0.010 0.004 f=1.31e-04 |g|=1.64e-03 r1=0.0154 aq(5, 5) 320s 7: 0.279 0.009 0.001 f=9.99e-05 |g|=3.01e-03 r1=0.0127 aq(2, 2) 320s 8: 0.278 0.005 0.000 f=1.33e-05 |g|=1.33e-04 r1=0.0042 aq(1, -2) 320s 9: 0.278 0.003 0.000 f=4.37e-06 |g|=4.63e-05 r1=0.0024 aq(4, 4) 320s 10: 0.278 0.002 0.000 f=1.28e-06 |g|=1.27e-05 r1=0.0013 aq(4, 4) 320s 11: 0.278 0.001 0.000 f=6.66e-07 |g|=3.87e-06 r1=0.0008 aq(3, -1) 320s 12: 0.278 0.001 0.000 f=3.37e-07 |g|=2.92e-06 r1=0.0007 aq(2, 2) 320s 13: 0.278 0.001 0.000 f=1.16e-07 |g|=9.81e-07 r1=0.0004 aq(1, -2) 320s Number of iterations, evaluations: 13 14 320s R1: 0.0004 320s 320s u+s,u,s: 0.40 0.37 0.03 320s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" [OK] 0.3s 320s Time: 0.32 320s Return code: 0 320s OKs: 1 320s Standard out: 320s OK 321s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" [OK] 0.3s 321s Time: 0.31 321s Return code: 0 321s OKs: 1 321s Standard out: 321s OK 392s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" [OK] 96.0s 392s Time: 95.99 392s Return code: 0 392s OKs: 1 392s Standard out: 392s For periodic.. True: 226 None: 4 False: 0 392s For aperiodic.. True: 0 None: 11 False: 219 392s OK 5966s autopkgtest-virt-ssh [04:29:05]: ------- nova console-log baa86511-5166-43ab-93b2-b16660fe6e27 (adt-resolute-amd64-cctbx-20260206-001420-juju-7f2275-prod-proposed-migration-environment-20-9f4fb490-3248-45a7-b168-9d196ac31d4f) ------ 5966s ERROR (CommandError): No server with a name or ID of 'baa86511-5166-43ab-93b2-b16660fe6e27' exists. 5966s --------------------------------------------------- 5966s ------- nova show baa86511-5166-43ab-93b2-b16660fe6e27 (adt-resolute-amd64-cctbx-20260206-001420-juju-7f2275-prod-proposed-migration-environment-20-9f4fb490-3248-45a7-b168-9d196ac31d4f) ------ 5966s ERROR (CommandError): No server with a name or ID of 'baa86511-5166-43ab-93b2-b16660fe6e27' exists. 5966s --------------------------------------------------- 5966s 5966s sudo-rs: '/tmp/autopkgtest-run-wrapper': command not found 5971s autopkgtest [04:29:10]: ERROR: testbed failure: testbed auxverb failed with exit code 255