0s autopkgtest [19:07:33]: starting date and time: 2025-12-03 19:07:33+0000 0s autopkgtest [19:07:33]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [19:07:33]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.itfzxh19/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade bowtie --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.9-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-1.secgroup --name adt-resolute-amd64-bowtie-20251203-190733-juju-7f2275-prod-proposed-migration-environment-15-e2dc534e-5818-4ad3-b9e8-17fd849f5192 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-bowtie-20251203-190733-juju-7f2275-prod-proposed-migration-environment-15-e2dc534e-5818-4ad3-b9e8-17fd849f5192 from image adt/ubuntu-resolute-amd64-server-20251203.img (UUID c6e78f39-c16c-48bb-9815-0096f6be052e)... 47s autopkgtest [19:08:20]: testbed dpkg architecture: amd64 47s autopkgtest [19:08:20]: testbed apt version: 3.1.12 48s autopkgtest [19:08:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s autopkgtest [19:08:21]: testbed release detected to be: None 48s autopkgtest [19:08:21]: updating testbed package index (apt update) 49s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 49s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 49s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 49s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 49s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [954 kB] 49s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [157 kB] 49s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.1 kB] 49s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [161 kB] 49s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [220 kB] 49s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6252 B] 49s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B] 49s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [764 kB] 49s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [349 kB] 49s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [23.0 kB] 49s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [9636 B] 49s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4040 B] 49s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [764 B] 50s Fetched 2796 kB in 1s (2984 kB/s) 51s Reading package lists... 51s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 51s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 52s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade... 52s The following packages will be upgraded: 52s libpython3-stdlib python3 python3-gdbm python3-minimal 52s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s Need to get 72.9 kB of archives. 52s After this operation, 2048 B of additional disk space will be used. 52s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.13.9-2 [28.1 kB] 52s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.13.9-2 [23.0 kB] 52s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.13.9-2 [10.8 kB] 52s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.13.9-2 [11.0 kB] 52s dpkg-preconfigure: unable to re-open stdin: No such file or directory 52s Fetched 72.9 kB in 0s (1782 kB/s) 53s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83538 files and directories currently installed.) 53s Preparing to unpack .../python3-minimal_3.13.9-2_amd64.deb ... 53s Unpacking python3-minimal (3.13.9-2) over (3.13.7-1) ... 53s Setting up python3-minimal (3.13.9-2) ... 53s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83538 files and directories currently installed.) 53s Preparing to unpack .../python3_3.13.9-2_amd64.deb ... 53s running python pre-rtupdate hooks for python3.13... 53s Unpacking python3 (3.13.9-2) over (3.13.7-1) ... 53s Preparing to unpack .../libpython3-stdlib_3.13.9-2_amd64.deb ... 53s Unpacking libpython3-stdlib:amd64 (3.13.9-2) over (3.13.7-1) ... 53s Preparing to unpack .../python3-gdbm_3.13.9-2_amd64.deb ... 53s Unpacking python3-gdbm (3.13.9-2) over (3.13.9-1) ... 53s Setting up python3-gdbm (3.13.9-2) ... 53s Setting up libpython3-stdlib:amd64 (3.13.9-2) ... 53s Setting up python3 (3.13.9-2) ... 53s running python rtupdate hooks for python3.13... 53s running python post-rtupdate hooks for python3.13... 53s Processing triggers for man-db (2.13.1-1) ... 53s autopkgtest [19:08:26]: upgrading testbed (apt dist-upgrade and autopurge) 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Calculating upgrade... 54s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Solving dependencies... 54s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s autopkgtest [19:08:29]: testbed running kernel: Linux 6.17.0-6-generic #6-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 7 13:34:17 UTC 2025 57s autopkgtest [19:08:30]: @@@@@@@@@@@@@@@@@@@@ apt-source bowtie 58s Get:1 http://ftpmaster.internal/ubuntu resolute/universe bowtie 1.3.1-3 (dsc) [2409 B] 58s Get:2 http://ftpmaster.internal/ubuntu resolute/universe bowtie 1.3.1-3 (tar) [7673 kB] 58s Get:3 http://ftpmaster.internal/ubuntu resolute/universe bowtie 1.3.1-3 (diff) [19.1 kB] 58s gpgv: Signature made Thu Jan 25 11:38:00 2024 UTC 58s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 58s gpgv: issuer "tillea@rki.de" 58s gpgv: Can't check signature: No public key 58s dpkg-source: warning: cannot verify inline signature for ./bowtie_1.3.1-3.dsc: no acceptable signature found 59s autopkgtest [19:08:32]: testing package bowtie version 1.3.1-3 59s autopkgtest [19:08:32]: build not needed 61s autopkgtest [19:08:34]: test run-unit-test: preparing testbed 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s Solving dependencies... 62s The following NEW packages will be installed: 62s bowtie bowtie-examples 62s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 62s Need to get 8052 kB of archives. 62s After this operation, 12.8 MB of additional disk space will be used. 62s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 bowtie amd64 1.3.1-3 [1562 kB] 62s Get:2 http://ftpmaster.internal/ubuntu resolute/universe amd64 bowtie-examples all 1.3.1-3 [6490 kB] 62s Fetched 8052 kB in 0s (24.5 MB/s) 62s Selecting previously unselected package bowtie. 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83538 files and directories currently installed.) 62s Preparing to unpack .../bowtie_1.3.1-3_amd64.deb ... 62s Unpacking bowtie (1.3.1-3) ... 62s Selecting previously unselected package bowtie-examples. 62s Preparing to unpack .../bowtie-examples_1.3.1-3_all.deb ... 62s Unpacking bowtie-examples (1.3.1-3) ... 62s Setting up bowtie (1.3.1-3) ... 62s Setting up bowtie-examples (1.3.1-3) ... 62s Processing triggers for man-db (2.13.1-1) ... 64s autopkgtest [19:08:37]: test run-unit-test: [----------------------- 64s Setting the index via positional argument will be deprecated in a future release. Please use -x option instead. 64s # reads processed: 1 64s # reads with at least one alignment: 1 (100.00%) 64s # reads that failed to align: 0 (0.00%) 64s Reported 5 alignments 64s example1 OK 64s Setting the index via positional argument will be deprecated in a future release. Please use -x option instead. 64s # reads processed: 1 64s # reads with at least one alignment: 1 (100.00%) 64s # reads that failed to align: 0 (0.00%) 64s Reported 3 alignments 64s example2 OK 64s Setting the index via positional argument will be deprecated in a future release. Please use -x option instead. 64s # reads processed: 1 64s # reads with at least one alignment: 1 (100.00%) 64s # reads that failed to align: 0 (0.00%) 64s Reported 5 alignments 64s example3 OK 64s Setting the index via positional argument will be deprecated in a future release. Please use -x option instead. 64s # reads processed: 1 64s # reads with at least one alignment: 1 (100.00%) 64s # reads that failed to align: 0 (0.00%) 64s Reported 1 alignments 64s example4 OK 64s Setting the index via positional argument will be deprecated in a future release. Please use -x option instead. 64s # reads processed: 1 64s # reads with at least one alignment: 1 (100.00%) 64s # reads that failed to align: 0 (0.00%) 64s Reported 5 alignments 64s example5 OK 64s example7 OK 64s Setting the index via positional argument will be deprecated in a future release. Please use -x option instead. 64s # reads processed: 1 64s # reads with at least one alignment: 1 (100.00%) 64s # reads that failed to align: 0 (0.00%) 64s Reported 5 alignments 64s example8 OK 64s Setting the index via positional argument will be deprecated in a future release. Please use -x option instead. 64s # reads processed: 1 64s # reads with at least one alignment: 1 (100.00%) 64s # reads that failed to align: 0 (0.00%) 64s Reported 1 alignments 64s autopkgtest [19:08:37]: test run-unit-test: -----------------------] 65s run-unit-test PASS 65s autopkgtest [19:08:38]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 65s autopkgtest [19:08:38]: @@@@@@@@@@@@@@@@@@@@ summary 65s run-unit-test PASS