0s autopkgtest [07:08:23]: starting date and time: 2025-10-21 07:08:23+0000 0s autopkgtest [07:08:23]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [07:08:23]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i4_98cel/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:node-jquery --apt-upgrade bamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=node-jquery/3.7.1+dfsg+~3.5.33-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-4.secgroup --name adt-resolute-amd64-bamtools-20251021-070823-juju-7f2275-prod-proposed-migration-environment-2-cf5e7636-4a0d-4a95-a281-a620f7a6d66e --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-amd64-bamtools-20251021-070823-juju-7f2275-prod-proposed-migration-environment-2-cf5e7636-4a0d-4a95-a281-a620f7a6d66e from image adt/ubuntu-resolute-amd64-server-20251020.img (UUID 058eb65a-2f1f-4603-be3f-91b3fbc0088c)... 34s autopkgtest [07:08:57]: testbed dpkg architecture: amd64 34s autopkgtest [07:08:57]: testbed apt version: 3.1.8ubuntu1 34s autopkgtest [07:08:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 34s autopkgtest [07:08:57]: testbed release detected to be: None 35s autopkgtest [07:08:58]: updating testbed package index (apt update) 35s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 35s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 35s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 35s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 35s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 35s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.0 kB] 35s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [67.3 kB] 35s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [585 kB] 36s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [135 kB] 36s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [82.5 kB] 36s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [28.0 kB] 36s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3208 B] 36s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [142 kB] 36s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [404 kB] 36s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [6744 B] 36s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3156 B] 36s Fetched 1560 kB in 1s (1575 kB/s) 37s Reading package lists... 37s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 37s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 37s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 37s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 38s Reading package lists... 38s Reading package lists... 38s Building dependency tree... 38s Reading state information... 38s Calculating upgrade... 38s The following packages will be upgraded: 38s libbrotli1 libjson-c5 python3-dbus python3-inflect python3-markupsafe 38s python3-oauthlib python3-zipp 38s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 38s Need to get 642 kB of archives. 38s After this operation, 236 kB of additional disk space will be used. 38s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libjson-c5 amd64 0.18+ds-1.1 [37.7 kB] 38s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dbus amd64 1.4.0-1build1 [118 kB] 38s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libbrotli1 amd64 1.1.0-2build6 [334 kB] 38s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-inflect all 7.5.0-1 [33.9 kB] 38s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markupsafe amd64 2.1.5-1build5 [13.8 kB] 38s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-oauthlib all 3.3.1-1 [93.5 kB] 38s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-zipp all 3.23.0-1 [10.4 kB] 38s dpkg-preconfigure: unable to re-open stdin: No such file or directory 38s Fetched 642 kB in 0s (60.5 MB/s) 39s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78444 files and directories currently installed.) 39s Preparing to unpack .../0-libjson-c5_0.18+ds-1.1_amd64.deb ... 39s Unpacking libjson-c5:amd64 (0.18+ds-1.1) over (0.18+ds-1) ... 39s Preparing to unpack .../1-python3-dbus_1.4.0-1build1_amd64.deb ... 39s Unpacking python3-dbus (1.4.0-1build1) over (1.4.0-1) ... 39s Preparing to unpack .../2-libbrotli1_1.1.0-2build6_amd64.deb ... 39s Unpacking libbrotli1:amd64 (1.1.0-2build6) over (1.1.0-2build5) ... 39s Preparing to unpack .../3-python3-inflect_7.5.0-1_all.deb ... 39s Unpacking python3-inflect (7.5.0-1) over (7.3.1-2) ... 39s Preparing to unpack .../4-python3-markupsafe_2.1.5-1build5_amd64.deb ... 39s Unpacking python3-markupsafe (2.1.5-1build5) over (2.1.5-1build4) ... 39s Preparing to unpack .../5-python3-oauthlib_3.3.1-1_all.deb ... 39s Unpacking python3-oauthlib (3.3.1-1) over (3.2.2-3) ... 39s Preparing to unpack .../6-python3-zipp_3.23.0-1_all.deb ... 39s Unpacking python3-zipp (3.23.0-1) over (3.21.0-1) ... 39s Setting up python3-dbus (1.4.0-1build1) ... 39s Setting up libbrotli1:amd64 (1.1.0-2build6) ... 39s Setting up python3-zipp (3.23.0-1) ... 39s Setting up python3-markupsafe (2.1.5-1build5) ... 39s Setting up python3-inflect (7.5.0-1) ... 39s Setting up python3-oauthlib (3.3.1-1) ... 39s Setting up libjson-c5:amd64 (0.18+ds-1.1) ... 39s Processing triggers for libc-bin (2.42-0ubuntu3) ... 39s autopkgtest [07:09:02]: upgrading testbed (apt dist-upgrade and autopurge) 40s Reading package lists... 40s Building dependency tree... 40s Reading state information... 40s Calculating upgrade... 40s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 40s Reading package lists... 40s Building dependency tree... 40s Reading state information... 40s Solving dependencies... 40s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 43s autopkgtest [07:09:06]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 43s autopkgtest [07:09:06]: @@@@@@@@@@@@@@@@@@@@ apt-source bamtools 45s Get:1 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (dsc) [2386 B] 45s Get:2 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (tar) [156 kB] 45s Get:3 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (diff) [11.4 kB] 45s gpgv: Signature made Sat Nov 9 12:15:34 2024 UTC 45s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 45s gpgv: Can't check signature: No public key 45s dpkg-source: warning: cannot verify inline signature for ./bamtools_2.5.2+dfsg-6build1.dsc: no acceptable signature found 45s autopkgtest [07:09:08]: testing package bamtools version 2.5.2+dfsg-6build1 46s autopkgtest [07:09:09]: build not needed 47s autopkgtest [07:09:10]: test run-unit-test: preparing testbed 47s Reading package lists... 47s Building dependency tree... 47s Reading state information... 47s Solving dependencies... 47s The following NEW packages will be installed: 47s bamtools libbamtools-dev libbamtools-doc libbamtools2.5.2 libjs-jquery 47s libjsoncpp26 zlib1g-dev 47s 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. 47s Need to get 2062 kB of archives. 47s After this operation, 7755 kB of additional disk space will be used. 47s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-6build1 [144 kB] 47s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 47s Get:3 http://ftpmaster.internal/ubuntu resolute/universe amd64 bamtools amd64 2.5.2+dfsg-6build1 [178 kB] 47s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 48s Get:5 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbamtools-dev amd64 2.5.2+dfsg-6build1 [271 kB] 48s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 48s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbamtools-doc all 2.5.2+dfsg-6build1 [159 kB] 48s Fetched 2062 kB in 1s (3753 kB/s) 48s Selecting previously unselected package libbamtools2.5.2:amd64. 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78457 files and directories currently installed.) 48s Preparing to unpack .../0-libbamtools2.5.2_2.5.2+dfsg-6build1_amd64.deb ... 48s Unpacking libbamtools2.5.2:amd64 (2.5.2+dfsg-6build1) ... 48s Selecting previously unselected package libjsoncpp26:amd64. 48s Preparing to unpack .../1-libjsoncpp26_1.9.6-3_amd64.deb ... 48s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 48s Selecting previously unselected package bamtools. 48s Preparing to unpack .../2-bamtools_2.5.2+dfsg-6build1_amd64.deb ... 48s Unpacking bamtools (2.5.2+dfsg-6build1) ... 48s Selecting previously unselected package zlib1g-dev:amd64. 48s Preparing to unpack .../3-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 48s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 48s Selecting previously unselected package libbamtools-dev:amd64. 48s Preparing to unpack .../4-libbamtools-dev_2.5.2+dfsg-6build1_amd64.deb ... 48s Unpacking libbamtools-dev:amd64 (2.5.2+dfsg-6build1) ... 48s Selecting previously unselected package libjs-jquery. 48s Preparing to unpack .../5-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 48s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 48s Selecting previously unselected package libbamtools-doc. 48s Preparing to unpack .../6-libbamtools-doc_2.5.2+dfsg-6build1_all.deb ... 48s Unpacking libbamtools-doc (2.5.2+dfsg-6build1) ... 48s Setting up libjsoncpp26:amd64 (1.9.6-3) ... 48s Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-6build1) ... 48s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 48s Setting up bamtools (2.5.2+dfsg-6build1) ... 48s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 48s Setting up libbamtools-dev:amd64 (2.5.2+dfsg-6build1) ... 48s Setting up libbamtools-doc (2.5.2+dfsg-6build1) ... 48s Processing triggers for man-db (2.13.1-1) ... 48s Processing triggers for libc-bin (2.42-0ubuntu3) ... 50s autopkgtest [07:09:13]: test run-unit-test: [----------------------- 50s 6 50s @HD VN:1.5 SO:coordinate 50s @SQ SN:ref LN:45 50s 50s 50s ********************************************** 50s Stats for BAM file(s): 50s ********************************************** 50s 50s Total reads: 6 50s Mapped reads: 6 (100%) 50s Forward strand: 4 (66.6667%) 50s Reverse strand: 2 (33.3333%) 50s Failed QC: 0 (0%) 50s Duplicates: 0 (0%) 50s Paired-end reads: 2 (33.3333%) 50s 'Proper-pairs': 2 (100%) 50s Both pairs mapped: 2 (100%) 50s Read 1: 1 50s Read 2: 1 50s Singletons: 0 (0%) 50s 50s autopkgtest [07:09:13]: test run-unit-test: -----------------------] 50s run-unit-test PASS 50s autopkgtest [07:09:13]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 51s autopkgtest [07:09:14]: @@@@@@@@@@@@@@@@@@@@ summary 51s run-unit-test PASS