0s autopkgtest [17:15:32]: starting date and time: 2026-02-06 17:15:32+0000 0s autopkgtest [17:15:32]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [17:15:32]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ppxdvml7/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade augustus --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-29.secgroup --name adt-resolute-amd64-augustus-20260206-171531-juju-7f2275-prod-proposed-migration-environment-15-b079b787-9405-4d18-9e38-2ae11ebdf571 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-amd64-augustus-20260206-171531-juju-7f2275-prod-proposed-migration-environment-15-b079b787-9405-4d18-9e38-2ae11ebdf571 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 81s autopkgtest [17:16:53]: testbed dpkg architecture: amd64 81s autopkgtest [17:16:53]: testbed apt version: 3.1.14 82s autopkgtest [17:16:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 82s autopkgtest [17:16:54]: testbed release detected to be: None 82s autopkgtest [17:16:54]: updating testbed package index (apt update) 83s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 83s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 83s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 83s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 83s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [197 kB] 83s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [10.7 kB] 83s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1492 kB] 83s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [32.1 kB] 83s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [254 kB] 83s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [182 kB] 83s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [6320 B] 83s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [80.4 kB] 83s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 83s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 83s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [524 kB] 83s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1368 kB] 83s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [35.3 kB] 83s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4892 B] 83s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [28.2 kB] 83s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1060 B] 84s Fetched 4343 kB in 1s (5080 kB/s) 85s Reading package lists... 85s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 85s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 85s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 86s Reading package lists... 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Calculating upgrade... 86s The following packages will be upgraded: 86s amd64-microcode apt busybox-initramfs busybox-static dmsetup findutils less 86s libapt-pkg7.0 libattr1 libc-bin libc-gconv-modules-extra libc6 86s libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2 libgpm2 libkeyutils1 86s libmaxminddb0 libnpth0t64 libsensors-config libsensors5 locales mawk patch 86s pollinate python3-linkify-it python3-markdown-it python3-referencing sed tar 86s 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Need to get 14.4 MB of archives. 86s After this operation, 270 kB disk space will be freed. 86s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 86s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 86s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 87s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-gconv-modules-extra amd64 2.42-2ubuntu5 [1394 kB] 87s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6 amd64 2.42-2ubuntu5 [2041 kB] 87s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-bin amd64 2.42-2ubuntu5 [702 kB] 87s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 87s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 87s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 87s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 87s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 87s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 87s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 87s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 87s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 locales all 2.42-2ubuntu5 [4255 kB] 87s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 87s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 87s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 87s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 87s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 87s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 87s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 87s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 87s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 87s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 87s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 87s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 87s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 87s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 87s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 87s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 87s dpkg-preconfigure: unable to re-open stdin: No such file or directory 87s Fetched 14.4 MB in 1s (22.3 MB/s) 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 88s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 88s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 88s Setting up findutils (4.10.0-3build2) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 88s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 88s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 88s Setting up sed (4.9-2build3) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 88s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 88s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 88s Setting up tar (1.35+dfsg-3.1build2) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 88s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_amd64.deb ... 88s Unpacking libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 88s Setting up libc-gconv-modules-extra:amd64 (2.42-2ubuntu5) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 88s Preparing to unpack .../libc6_2.42-2ubuntu5_amd64.deb ... 88s Unpacking libc6:amd64 (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 88s Setting up libc6:amd64 (2.42-2ubuntu5) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 88s Preparing to unpack .../libc-bin_2.42-2ubuntu5_amd64.deb ... 88s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 88s Setting up libc-bin (2.42-2ubuntu5) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 88s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 88s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 88s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 89s Preparing to unpack .../00-mawk_1.3.4.20260129-1_amd64.deb ... 89s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 89s Preparing to unpack .../01-libapt-pkg7.0_3.1.15_amd64.deb ... 89s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ... 89s Preparing to unpack .../02-apt_3.1.15_amd64.deb ... 89s Unpacking apt (3.1.15) over (3.1.14) ... 89s Preparing to unpack .../03-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ... 89s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 89s Preparing to unpack .../04-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ... 89s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ... 89s Preparing to unpack .../05-less_668-1build1_amd64.deb ... 89s Unpacking less (668-1build1) over (668-1) ... 89s Preparing to unpack .../06-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ... 89s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ... 89s Preparing to unpack .../07-locales_2.42-2ubuntu5_all.deb ... 89s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 89s Preparing to unpack .../08-python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 89s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 89s Preparing to unpack .../09-python3-markdown-it_3.0.0-3build1_all.deb ... 89s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ... 89s Preparing to unpack .../10-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ... 89s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 89s Preparing to unpack .../11-libdrm-common_2.4.131-1_all.deb ... 89s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ... 89s Preparing to unpack .../12-libdrm2_2.4.131-1_amd64.deb ... 89s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ... 89s Preparing to unpack .../13-libgpm2_1.20.7-12build1_amd64.deb ... 89s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ... 90s Preparing to unpack .../14-libmaxminddb0_1.12.2-1build2_amd64.deb ... 90s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ... 90s Preparing to unpack .../15-libsensors-config_1%3a3.6.2-2build1_all.deb ... 90s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ... 90s Preparing to unpack .../16-libsensors5_1%3a3.6.2-2build1_amd64.deb ... 90s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ... 90s Preparing to unpack .../17-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ... 90s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ... 90s Preparing to unpack .../18-libdrm-amdgpu1_2.4.131-1_amd64.deb ... 90s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ... 90s Preparing to unpack .../19-libnpth0t64_1.8-3build1_amd64.deb ... 90s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ... 90s Preparing to unpack .../20-patch_2.8-2build1_amd64.deb ... 90s Unpacking patch (2.8-2build1) over (2.8-2) ... 90s Preparing to unpack .../21-pollinate_4.33-4ubuntu5_all.deb ... 90s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 90s Preparing to unpack .../22-python3-referencing_0.36.2-1ubuntu2_all.deb ... 90s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 90s Preparing to unpack .../23-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ... 90s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ... 90s Setting up libnpth0t64:amd64 (1.8-3build1) ... 90s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ... 90s Setting up libgpm2:amd64 (1.20.7-12build1) ... 90s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ... 90s Setting up libsensors-config (1:3.6.2-2build1) ... 90s Setting up less (668-1build1) ... 90s Setting up amd64-microcode (3.20251202.1ubuntu1) ... 90s amd64-microcode: microcode will be updated at next boot 90s Setting up locales (2.42-2ubuntu5) ... 91s Generating locales (this might take a while)... 92s en_US.UTF-8... done 92s Generation complete. 92s Setting up pollinate (4.33-4ubuntu5) ... 102s Setting up busybox-static (1:1.37.0-7ubuntu1) ... 102s Setting up patch (2.8-2build1) ... 102s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 102s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 102s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 102s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 102s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 102s Setting up mawk (1.3.4.20260129-1) ... 102s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 102s Setting up libdrm-common (2.4.131-1) ... 102s Setting up python3-referencing (0.36.2-1ubuntu2) ... 102s Setting up apt (3.1.15) ... 103s Setting up python3-markdown-it (3.0.0-3build1) ... 103s Setting up libdrm2:amd64 (2.4.131-1) ... 103s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 103s Processing triggers for libc-bin (2.42-2ubuntu5) ... 103s Processing triggers for systemd (259-1ubuntu3) ... 103s Processing triggers for man-db (2.13.1-1) ... 104s Processing triggers for install-info (7.2-5) ... 105s Processing triggers for initramfs-tools (0.150ubuntu7) ... 105s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 109s autopkgtest [17:17:21]: upgrading testbed (apt dist-upgrade and autopurge) 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s Solving dependencies... 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s autopkgtest [17:17:23]: rebooting testbed after setup commands that affected boot 139s autopkgtest [17:17:51]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 141s autopkgtest [17:17:53]: @@@@@@@@@@@@@@@@@@@@ apt-source augustus 148s Get:1 http://ftpmaster.internal/ubuntu resolute/universe augustus 3.5.0+dfsg-5build3 (dsc) [2370 B] 148s Get:2 http://ftpmaster.internal/ubuntu resolute/universe augustus 3.5.0+dfsg-5build3 (tar) [152 MB] 148s Get:3 http://ftpmaster.internal/ubuntu resolute/universe augustus 3.5.0+dfsg-5build3 (diff) [20.6 kB] 148s gpgv: Signature made Sat Nov 1 18:44:53 2025 UTC 148s gpgv: using RSA key 4D0BE12F0E4776D8AACE9696E66C775AEBFE6C7D 148s gpgv: Can't check signature: No public key 148s dpkg-source: warning: cannot verify inline signature for ./augustus_3.5.0+dfsg-5build3.dsc: no acceptable signature found 154s autopkgtest [17:18:06]: testing package augustus version 3.5.0+dfsg-5build3 154s autopkgtest [17:18:06]: build not needed 193s autopkgtest [17:18:45]: test test-example: preparing testbed 193s Reading package lists... 194s Building dependency tree... 194s Reading state information... 194s Solving dependencies... 194s The following NEW packages will be installed: 194s augustus augustus-data augustus-doc libbamtools2.5.3 194s libboost-iostreams1.88.0 libcolamd3 libdeflate0 libgomp1 libgsl28 194s libgslcblas0 libhts3t64 libhtscodecs2 libmysql++3t64 libmysqlclient24 194s libsuitesparseconfig7 mysql-common 194s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 194s Need to get 51.3 MB of archives. 194s After this operation, 315 MB of additional disk space will be used. 194s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbamtools2.5.3 amd64 2.5.3+dfsg-1 [144 kB] 194s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-iostreams1.88.0 amd64 1.88.0-1.4ubuntu3 [262 kB] 194s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 194s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libsuitesparseconfig7 amd64 1:7.12.1+dfsg-1 [22.0 kB] 194s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolamd3 amd64 1:7.12.1+dfsg-1 [27.4 kB] 194s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgslcblas0 amd64 2.8+dfsg-6 [130 kB] 194s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgsl28 amd64 2.8+dfsg-6 [1050 kB] 194s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 194s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhtscodecs2 amd64 1.6.1-2build1 [108 kB] 194s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhts3t64 amd64 1.22.1+ds2-1 [461 kB] 194s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 194s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 194s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmysql++3t64 amd64 3.2.5-2.3build2 [103 kB] 194s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 augustus-data all 3.5.0+dfsg-5build3 [22.3 MB] 195s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 augustus amd64 3.5.0+dfsg-5build3 [1805 kB] 195s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 augustus-doc all 3.5.0+dfsg-5build3 [23.4 MB] 196s Fetched 51.3 MB in 2s (27.4 MB/s) 196s Selecting previously unselected package libbamtools2.5.3:amd64. 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83962 files and directories currently installed.) 196s Preparing to unpack .../00-libbamtools2.5.3_2.5.3+dfsg-1_amd64.deb ... 196s Unpacking libbamtools2.5.3:amd64 (2.5.3+dfsg-1) ... 196s Selecting previously unselected package libboost-iostreams1.88.0:amd64. 196s Preparing to unpack .../01-libboost-iostreams1.88.0_1.88.0-1.4ubuntu3_amd64.deb ... 196s Unpacking libboost-iostreams1.88.0:amd64 (1.88.0-1.4ubuntu3) ... 196s Selecting previously unselected package libgomp1:amd64. 196s Preparing to unpack .../02-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 196s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 196s Selecting previously unselected package libsuitesparseconfig7:amd64. 196s Preparing to unpack .../03-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_amd64.deb ... 196s Unpacking libsuitesparseconfig7:amd64 (1:7.12.1+dfsg-1) ... 196s Selecting previously unselected package libcolamd3:amd64. 196s Preparing to unpack .../04-libcolamd3_1%3a7.12.1+dfsg-1_amd64.deb ... 196s Unpacking libcolamd3:amd64 (1:7.12.1+dfsg-1) ... 196s Selecting previously unselected package libgslcblas0:amd64. 196s Preparing to unpack .../05-libgslcblas0_2.8+dfsg-6_amd64.deb ... 196s Unpacking libgslcblas0:amd64 (2.8+dfsg-6) ... 196s Selecting previously unselected package libgsl28:amd64. 196s Preparing to unpack .../06-libgsl28_2.8+dfsg-6_amd64.deb ... 196s Unpacking libgsl28:amd64 (2.8+dfsg-6) ... 196s Selecting previously unselected package libdeflate0:amd64. 196s Preparing to unpack .../07-libdeflate0_1.23-2_amd64.deb ... 196s Unpacking libdeflate0:amd64 (1.23-2) ... 196s Selecting previously unselected package libhtscodecs2:amd64. 196s Preparing to unpack .../08-libhtscodecs2_1.6.1-2build1_amd64.deb ... 196s Unpacking libhtscodecs2:amd64 (1.6.1-2build1) ... 196s Selecting previously unselected package libhts3t64:amd64. 196s Preparing to unpack .../09-libhts3t64_1.22.1+ds2-1_amd64.deb ... 196s Unpacking libhts3t64:amd64 (1.22.1+ds2-1) ... 196s Selecting previously unselected package mysql-common. 196s Preparing to unpack .../10-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 196s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 196s Selecting previously unselected package libmysqlclient24:amd64. 196s Preparing to unpack .../11-libmysqlclient24_8.4.8-0ubuntu1_amd64.deb ... 196s Unpacking libmysqlclient24:amd64 (8.4.8-0ubuntu1) ... 196s Selecting previously unselected package libmysql++3t64:amd64. 196s Preparing to unpack .../12-libmysql++3t64_3.2.5-2.3build2_amd64.deb ... 196s Unpacking libmysql++3t64:amd64 (3.2.5-2.3build2) ... 196s Selecting previously unselected package augustus-data. 196s Preparing to unpack .../13-augustus-data_3.5.0+dfsg-5build3_all.deb ... 196s Unpacking augustus-data (3.5.0+dfsg-5build3) ... 197s Selecting previously unselected package augustus. 197s Preparing to unpack .../14-augustus_3.5.0+dfsg-5build3_amd64.deb ... 197s Unpacking augustus (3.5.0+dfsg-5build3) ... 197s Selecting previously unselected package augustus-doc. 197s Preparing to unpack .../15-augustus-doc_3.5.0+dfsg-5build3_all.deb ... 197s Unpacking augustus-doc (3.5.0+dfsg-5build3) ... 197s Setting up libhtscodecs2:amd64 (1.6.1-2build1) ... 197s Setting up mysql-common (5.8+1.1.1ubuntu2) ... 197s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode 197s Setting up libgslcblas0:amd64 (2.8+dfsg-6) ... 197s Setting up libdeflate0:amd64 (1.23-2) ... 197s Setting up libboost-iostreams1.88.0:amd64 (1.88.0-1.4ubuntu3) ... 197s Setting up libgomp1:amd64 (15.2.0-12ubuntu1) ... 197s Setting up libmysqlclient24:amd64 (8.4.8-0ubuntu1) ... 197s Setting up augustus-data (3.5.0+dfsg-5build3) ... 197s Setting up augustus-doc (3.5.0+dfsg-5build3) ... 197s Setting up libbamtools2.5.3:amd64 (2.5.3+dfsg-1) ... 197s Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... 197s Setting up libsuitesparseconfig7:amd64 (1:7.12.1+dfsg-1) ... 197s Setting up libgsl28:amd64 (2.8+dfsg-6) ... 197s Setting up libmysql++3t64:amd64 (3.2.5-2.3build2) ... 197s Setting up libcolamd3:amd64 (1:7.12.1+dfsg-1) ... 197s Setting up augustus (3.5.0+dfsg-5build3) ... 197s Processing triggers for man-db (2.13.1-1) ... 198s Processing triggers for libc-bin (2.42-2ubuntu5) ... 199s autopkgtest [17:18:51]: test test-example: [----------------------- 199s # This output was generated with AUGUSTUS (version 3.5.0). 199s # AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de), 199s # O. Keller, S. König, L. Gerischer, L. Romoth, Katharina Hoff, Henry Mehlan and Daniel Honsel. 199s # Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), 199s # Using native and syntenically mapped cDNA alignments to improve de novo gene finding 199s # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 199s # No extrinsic information on sequences given. 199s # Sources of extrinsic information: M RM 199s # Initializing the parameters using config directory /usr/share/augustus/config/ ... 199s # human version. Using species specific transition matrix: /usr/share/augustus/config/species/human/human_trans_shadow_partial_utr.pbl 199s # Looks like /tmp/autopkgtest.hVJUDr/build.n6f/src/examples/example.fa is in fasta format. 199s # We have hints for 0 sequences and for 0 of the sequences in the input set. 199s # 199s # ----- prediction on sequence number 1 (length = 9453, name = HS04636) ----- 199s # 199s # Predicted genes for sequence number 1 on both strands 199s # start gene g1 199s HS04636 AUGUSTUS gene 836 8857 1 + . g1 199s HS04636 AUGUSTUS transcript 836 8857 . + . g1.t1 199s HS04636 AUGUSTUS tss 836 836 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS exon 836 1017 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS start_codon 966 968 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 966 1017 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 1818 1934 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS exon 1818 1934 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 2055 2198 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS exon 2055 2198 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 2852 2995 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS exon 2852 2995 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 3426 3607 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS exon 3426 3607 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 4340 4423 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS exon 4340 4423 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 4543 4789 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS exon 4543 4789 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 5072 5358 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS exon 5072 5358 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 5860 6007 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS exon 5860 6007 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 6494 6903 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS exon 6494 8857 . + . transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS stop_codon 6901 6903 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS tts 8857 8857 . + . transcript_id "g1.t1"; gene_id "g1"; 199s # protein sequence = [MLARALLLCAVLALSHTANPCCSHPCQNRGVCMSVGFDQYKCDCTRTGFYGENCSTPEFLTRIKLFLKPTPNTVHYIL 199s # THFKGFWNVVNNIPFLRNAIMSYVLTSRSHLIDSPPTYNADYGYKSWEAFSNLSYYTRALPPVPDDCPTPLGVKGKKQLPDSNEIVEKLLLRRKFIPD 199s # PQGSNMMFAFFAQHFTHQFFKTDHKRGPAFTNGLGHGVDLNHIYGETLARQRKLRLFKDGKMKYQIIDGEMYPPTVKDTQAEMIYPPQVPEHLRFAVG 199s # QEVFGLVPGLMMYATIWLREHNRVCDVLKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNKQFQYQNRIAAEFNTLYH 199s # WHPLLPDTFQIHDQKYNYQQFIYNNSILLEHGITQFVESFTRQIAGRVAGGRNVPPAVQKVSQASIDQSRQMKYQSFNEYRKRFMLKPYESFEELTGE 199s # KEMSAELEALYGDIDAVELYPALLVEKPRPDAIFGETMVEVGAPFSLKGLMGNVICSPAYWKPSTFGGEVGFQIINTASIQSLICNNVKGCPFTSFSV 199s # PDPELIKTVTINASSSRSGLDDINPTVLLKERSTEL] 199s # Evidence for and against this transcript: 199s # % of transcript supported by hints (any source): 0 199s # CDS exons: 0/10 199s # CDS introns: 0/9 199s # 5'UTR exons and introns: 0/1 199s # 3'UTR exons and introns: 0/1 199s # hint groups fully obeyed: 0 199s # incompatible hint groups: 0 199s # end gene g1 199s ### 199s # 199s # ----- prediction on sequence number 2 (length = 2344, name = HS08198) ----- 199s # 199s # Predicted genes for sequence number 2 on both strands 199s # start gene g2 199s HS08198 AUGUSTUS gene 86 2344 1 + . g2 199s HS08198 AUGUSTUS transcript 86 2344 . + . g2.t1 199s HS08198 AUGUSTUS tss 86 86 . + . transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS exon 86 582 . + . transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS start_codon 445 447 . + 0 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS CDS 445 582 . + 0 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS CDS 812 894 . + 0 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS exon 812 894 . + . transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS CDS 1053 1123 . + 1 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS exon 1053 1123 . + . transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS CDS 1208 1315 . + 2 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS exon 1208 1315 . + . transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS CDS 1587 1688 . + 2 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS exon 1587 1688 . + . transcript_id "g2.t1"; gene_id "g2"; 199s # protein sequence = [MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQEQGHRAEATTLHVAPQGTAMAVSTFRKLDGIC 199s # WQVRQLYGDTGVLGRFLLQARGARGAVHVVVAETDYQSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIFYFPKY] 199s # Evidence for and against this transcript: 199s # % of transcript supported by hints (any source): 0 199s # CDS exons: 0/5 199s # CDS introns: 0/5 199s # 5'UTR exons and introns: 0/1 199s # 3'UTR exons and introns: 0/0 199s # hint groups fully obeyed: 0 199s # incompatible hint groups: 0 199s # end gene g2 199s ### 199s # command line: 199s # augustus --species=human --UTR=on /tmp/autopkgtest.hVJUDr/build.n6f/src/examples/example.fa 199s # This output was generated with AUGUSTUS (version 3.5.0). 199s # AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de), 199s # O. Keller, S. König, L. Gerischer, L. Romoth, Katharina Hoff, Henry Mehlan and Daniel Honsel. 199s # Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), 199s # Using native and syntenically mapped cDNA alignments to improve de novo gene finding 199s # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 199s # Sources of extrinsic information: M P E RM 199s # Setting 1group1gene for E. 199s # reading in the file /tmp/autopkgtest.hVJUDr/build.n6f/src/examples/hints.gff ... 199s # Have extrinsic information about 2 sequences (in the specified range). 199s # Initializing the parameters using config directory /usr/share/augustus/config/ ... 199s # human version. Using default transition matrix. 199s # Looks like /tmp/autopkgtest.hVJUDr/build.n6f/src/examples/example.fa is in fasta format. 199s # We have hints for 2 sequences and for 2 of the sequences in the input set. 199s # 199s # ----- prediction on sequence number 1 (length = 9453, name = HS04636) ----- 199s # 199s # Predicted genes for sequence number 1 on both strands 199s # start gene g1 199s HS04636 AUGUSTUS gene 966 7633 1 + . g1 199s HS04636 AUGUSTUS transcript 966 7633 . + . g1.t1 199s HS04636 AUGUSTUS start_codon 966 968 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 966 1017 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 1818 1934 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 2055 2198 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 2852 2995 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 3426 3607 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 4340 4423 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 4543 4789 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 5072 5358 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 5860 6007 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 6494 6554 . + 2 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS CDS 7627 7633 . + 1 transcript_id "g1.t1"; gene_id "g1"; 199s HS04636 AUGUSTUS stop_codon 7631 7633 . + 0 transcript_id "g1.t1"; gene_id "g1"; 199s # protein sequence = [MLARALLLCAVLALSHTANPCCSHPCQNRGVCMSVGFDQYKCDCTRTGFYGENCSTPEFLTRIKLFLKPTPNTVHYIL 199s # THFKGFWNVVNNIPFLRNAIMSYVLTSRSHLIDSPPTYNADYGYKSWEAFSNLSYYTRALPPVPDDCPTPLGVKGKKQLPDSNEIVEKLLLRRKFIPD 199s # PQGSNMMFAFFAQHFTHQFFKTDHKRGPAFTNGLGHGVDLNHIYGETLARQRKLRLFKDGKMKYQIIDGEMYPPTVKDTQAEMIYPPQVPEHLRFAVG 199s # QEVFGLVPGLMMYATIWLREHNRVCDVLKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNKQFQYQNRIAAEFNTLYH 199s # WHPLLPDTFQIHDQKYNYQQFIYNNSILLEHGITQFVESFTRQIAGRVAGGRNVPPAVQKVSQASIDQSRQMKYQSFNEYRKRFMLKPYESFEELTGE 199s # KEMSAELEALYGDIDAVELV] 199s # Evidence for and against this transcript: 199s # % of transcript supported by hints (any source): 4.76 199s # CDS exons: 1/11 199s # P: 1 199s # CDS introns: 0/10 199s # 5'UTR exons and introns: 0/0 199s # 3'UTR exons and introns: 0/0 199s # hint groups fully obeyed: 2 199s # E: 1 199s # P: 1 199s # incompatible hint groups: 2 199s # M: 1 199s # P: 1 199s # end gene g1 199s ### 199s # 199s # ----- prediction on sequence number 2 (length = 2344, name = HS08198) ----- 199s # 199s # Predicted genes for sequence number 2 on both strands 199s # start gene g2 199s HS08198 AUGUSTUS gene 445 2344 1 + . g2 199s HS08198 AUGUSTUS transcript 445 2344 . + . g2.t1 199s HS08198 AUGUSTUS start_codon 445 447 . + 0 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS CDS 445 582 . + 0 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS CDS 758 894 . + 0 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS CDS 1053 1123 . + 1 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS CDS 1208 1315 . + 2 transcript_id "g2.t1"; gene_id "g2"; 199s HS08198 AUGUSTUS CDS 1587 1688 . + 2 transcript_id "g2.t1"; gene_id "g2"; 199s # protein sequence = [MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQFAGTWLLVAVGSACRFLQEQGHRAEATTLHVA 199s # PQGTAMAVSTFRKLDGICWQVRQLYGDTGVLGRFLLQARGARGAVHVVVAETDYQSFAVLYLERAGQLSVKLYARSLPVSDSVLSGFEQRVQEAHLTE 199s # DQIFYFPKY] 199s # Evidence for and against this transcript: 199s # % of transcript supported by hints (any source): 10 199s # CDS exons: 0/5 199s # CDS introns: 1/5 199s # M: 1 199s # 5'UTR exons and introns: 0/0 199s # 3'UTR exons and introns: 0/0 199s # hint groups fully obeyed: 2 199s # E: 1 199s # M: 1 199s # incompatible hint groups: 1 199s # M: 1 199s # end gene g2 199s ### 199s # command line: 199s # augustus --species=human --hintsfile=/tmp/autopkgtest.hVJUDr/build.n6f/src/examples/hints.gff --extrinsicCfgFile=/usr/share/augustus/config/extrinsic/extrinsic.MPE.cfg /tmp/autopkgtest.hVJUDr/build.n6f/src/examples/example.fa 200s autopkgtest [17:18:52]: test test-example: -----------------------] 200s test-example PASS 200s autopkgtest [17:18:52]: test test-example: - - - - - - - - - - results - - - - - - - - - - 200s autopkgtest [17:18:52]: test test-example-with-training: preparing testbed 200s Reading package lists... 201s Building dependency tree... 201s Reading state information... 201s Solving dependencies... 201s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 202s autopkgtest [17:18:54]: test test-example-with-training: [----------------------- 202s '/usr/share/augustus/config' -> './config' 202s '/usr/share/augustus/config/cgp' -> './config/cgp' 202s '/usr/share/augustus/config/cgp/cgp_param_21features_accuracy_largerGrid.convDivCorrect.cfg' -> './config/cgp/cgp_param_21features_accuracy_largerGrid.convDivCorrect.cfg' 202s '/usr/share/augustus/config/cgp/log_reg_parameters_arabidopsis.cfg' -> './config/cgp/log_reg_parameters_arabidopsis.cfg' 202s '/usr/share/augustus/config/cgp/log_reg_parameters_default.cfg' -> './config/cgp/log_reg_parameters_default.cfg' 202s '/usr/share/augustus/config/cgp/log_reg_parameters_fly.cfg' -> './config/cgp/log_reg_parameters_fly.cfg' 202s '/usr/share/augustus/config/cgp/log_reg_parameters_human.cfg' -> './config/cgp/log_reg_parameters_human.cfg' 202s '/usr/share/augustus/config/cgp/log_reg_parameters_primates.cfg' -> './config/cgp/log_reg_parameters_primates.cfg' 202s '/usr/share/augustus/config/cgp/log_reg_parameters_s_aureus.cfg' -> './config/cgp/log_reg_parameters_s_aureus.cfg' 202s '/usr/share/augustus/config/extrinsic' -> './config/extrinsic' 202s '/usr/share/augustus/config/extrinsic/extrinsic-cgp.cfg' -> './config/extrinsic/extrinsic-cgp.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.E.XNT.cfg' -> './config/extrinsic/extrinsic.E.XNT.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.E.cfg' -> './config/extrinsic/extrinsic.E.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.M.RM.E.W.P.cfg' -> './config/extrinsic/extrinsic.M.RM.E.W.P.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.M.RM.E.W.cfg' -> './config/extrinsic/extrinsic.M.RM.E.W.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.M.RM.PB.cfg' -> './config/extrinsic/extrinsic.M.RM.PB.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.ME.cfg' -> './config/extrinsic/extrinsic.ME.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.MEMS.cfg' -> './config/extrinsic/extrinsic.MEMS.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.MP.cfg' -> './config/extrinsic/extrinsic.MP.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.MPE.cfg' -> './config/extrinsic/extrinsic.MPE.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.MT.cfg' -> './config/extrinsic/extrinsic.MT.cfg' 202s '/usr/share/augustus/config/extrinsic/extrinsic.cfg' -> './config/extrinsic/extrinsic.cfg' 202s '/usr/share/augustus/config/model' -> './config/model' 202s '/usr/share/augustus/config/model/constraints_shadow_partial.txt' -> './config/model/constraints_shadow_partial.txt' 202s '/usr/share/augustus/config/model/constraints_shadow_partial_utr.txt' -> './config/model/constraints_shadow_partial_utr.txt' 202s '/usr/share/augustus/config/model/ovlp_len.pbl' -> './config/model/ovlp_len.pbl' 202s '/usr/share/augustus/config/model/ovlp_len_archaea.pbl' -> './config/model/ovlp_len_archaea.pbl' 202s '/usr/share/augustus/config/model/states_shadow.cfg' -> './config/model/states_shadow.cfg' 202s '/usr/share/augustus/config/model/states_shadow_2igenic.cfg' -> './config/model/states_shadow_2igenic.cfg' 202s '/usr/share/augustus/config/model/states_shadow_bacterium.cfg' -> './config/model/states_shadow_bacterium.cfg' 202s '/usr/share/augustus/config/model/states_shadow_intronless.cfg' -> './config/model/states_shadow_intronless.cfg' 202s '/usr/share/augustus/config/model/states_shadow_utr.cfg' -> './config/model/states_shadow_utr.cfg' 202s '/usr/share/augustus/config/model/states_shadow_utr_nc.cfg' -> './config/model/states_shadow_utr_nc.cfg' 202s '/usr/share/augustus/config/model/states_singlestrand.cfg' -> './config/model/states_singlestrand.cfg' 202s '/usr/share/augustus/config/model/states_singlestrand_2igenic.cfg' -> './config/model/states_singlestrand_2igenic.cfg' 202s '/usr/share/augustus/config/model/trans_shadow_atleastone.pbl' -> './config/model/trans_shadow_atleastone.pbl' 202s '/usr/share/augustus/config/model/trans_shadow_bacterium.pbl' -> './config/model/trans_shadow_bacterium.pbl' 202s '/usr/share/augustus/config/model/trans_shadow_complete.pbl' -> './config/model/trans_shadow_complete.pbl' 202s '/usr/share/augustus/config/model/trans_shadow_complete_utr.pbl' -> './config/model/trans_shadow_complete_utr.pbl' 202s '/usr/share/augustus/config/model/trans_shadow_exactlyone.pbl' -> './config/model/trans_shadow_exactlyone.pbl' 202s '/usr/share/augustus/config/model/trans_shadow_intronless.pbl' -> './config/model/trans_shadow_intronless.pbl' 202s '/usr/share/augustus/config/model/trans_shadow_partial.pbl' -> './config/model/trans_shadow_partial.pbl' 202s '/usr/share/augustus/config/model/trans_shadow_partial_utr.pbl' -> './config/model/trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/model/trans_shadow_partial_utr_nc.pbl' -> './config/model/trans_shadow_partial_utr_nc.pbl' 202s '/usr/share/augustus/config/model/trans_singlestrand_atleastone.pbl' -> './config/model/trans_singlestrand_atleastone.pbl' 202s '/usr/share/augustus/config/model/trans_singlestrand_complete.pbl' -> './config/model/trans_singlestrand_complete.pbl' 202s '/usr/share/augustus/config/model/trans_singlestrand_exactlyone.pbl' -> './config/model/trans_singlestrand_exactlyone.pbl' 202s '/usr/share/augustus/config/model/trans_singlestrand_partial.pbl' -> './config/model/trans_singlestrand_partial.pbl' 202s '/usr/share/augustus/config/parameters' -> './config/parameters' 202s '/usr/share/augustus/config/parameters/AUG_CMDLN_PARAMETERS.md' -> './config/parameters/AUG_CMDLN_PARAMETERS.md' 202s '/usr/share/augustus/config/parameters/aug_cmdln_parameters.json' -> './config/parameters/aug_cmdln_parameters.json' 202s '/usr/share/augustus/config/profile' -> './config/profile' 202s '/usr/share/augustus/config/profile/blosum55.qij' -> './config/profile/blosum55.qij' 202s '/usr/share/augustus/config/profile/blosum62.qij' -> './config/profile/blosum62.qij' 202s '/usr/share/augustus/config/profile/default.qij' -> './config/profile/default.qij' 202s '/usr/share/augustus/config/species' -> './config/species' 202s '/usr/share/augustus/config/species/Anopheles_gambiae' -> './config/species/Anopheles_gambiae' 202s '/usr/share/augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_exon_probs.pbl' -> './config/species/Anopheles_gambiae/Anopheles_gambiae_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_igenic_probs.pbl' -> './config/species/Anopheles_gambiae/Anopheles_gambiae_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_intron_probs.pbl' -> './config/species/Anopheles_gambiae/Anopheles_gambiae_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.cfg' -> './config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.cfg' 202s '/usr/share/augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.cgp.cfg' -> './config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.utr.cfg' -> './config/species/Anopheles_gambiae/Anopheles_gambiae_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_parameters.cfg' -> './config/species/Anopheles_gambiae/Anopheles_gambiae_parameters.cfg' 202s '/usr/share/augustus/config/species/Anopheles_gambiae/Anopheles_gambiae_weightmatrix.txt' -> './config/species/Anopheles_gambiae/Anopheles_gambiae_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Anopheles_gambiae/README.txt' -> './config/species/Anopheles_gambiae/README.txt' 202s '/usr/share/augustus/config/species/Argopecten_irradians' -> './config/species/Argopecten_irradians' 202s '/usr/share/augustus/config/species/Argopecten_irradians/Argopecten_irradians_exon_probs.pbl' -> './config/species/Argopecten_irradians/Argopecten_irradians_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Argopecten_irradians/Argopecten_irradians_igenic_probs.pbl' -> './config/species/Argopecten_irradians/Argopecten_irradians_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Argopecten_irradians/Argopecten_irradians_intron_probs.pbl' -> './config/species/Argopecten_irradians/Argopecten_irradians_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Argopecten_irradians/Argopecten_irradians_metapars.cfg' -> './config/species/Argopecten_irradians/Argopecten_irradians_metapars.cfg' 202s '/usr/share/augustus/config/species/Argopecten_irradians/Argopecten_irradians_metapars.cgp.cfg' -> './config/species/Argopecten_irradians/Argopecten_irradians_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Argopecten_irradians/Argopecten_irradians_metapars.utr.cfg' -> './config/species/Argopecten_irradians/Argopecten_irradians_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Argopecten_irradians/Argopecten_irradians_parameters.cfg' -> './config/species/Argopecten_irradians/Argopecten_irradians_parameters.cfg' 202s '/usr/share/augustus/config/species/Argopecten_irradians/Argopecten_irradians_weightmatrix.txt' -> './config/species/Argopecten_irradians/Argopecten_irradians_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Argopecten_irradians/README.txt' -> './config/species/Argopecten_irradians/README.txt' 202s '/usr/share/augustus/config/species/Aurelia_aurita' -> './config/species/Aurelia_aurita' 202s '/usr/share/augustus/config/species/Aurelia_aurita/Aurelia_aurita_exon_probs.pbl' -> './config/species/Aurelia_aurita/Aurelia_aurita_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Aurelia_aurita/Aurelia_aurita_igenic_probs.pbl' -> './config/species/Aurelia_aurita/Aurelia_aurita_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Aurelia_aurita/Aurelia_aurita_intron_probs.pbl' -> './config/species/Aurelia_aurita/Aurelia_aurita_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Aurelia_aurita/Aurelia_aurita_metapars.cfg' -> './config/species/Aurelia_aurita/Aurelia_aurita_metapars.cfg' 202s '/usr/share/augustus/config/species/Aurelia_aurita/Aurelia_aurita_metapars.cgp.cfg' -> './config/species/Aurelia_aurita/Aurelia_aurita_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Aurelia_aurita/Aurelia_aurita_metapars.utr.cfg' -> './config/species/Aurelia_aurita/Aurelia_aurita_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Aurelia_aurita/Aurelia_aurita_parameters.cfg' -> './config/species/Aurelia_aurita/Aurelia_aurita_parameters.cfg' 202s '/usr/share/augustus/config/species/Aurelia_aurita/Aurelia_aurita_weightmatrix.txt' -> './config/species/Aurelia_aurita/Aurelia_aurita_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Aurelia_aurita/README.txt' -> './config/species/Aurelia_aurita/README.txt' 202s '/usr/share/augustus/config/species/Bathycoccus_prasinos' -> './config/species/Bathycoccus_prasinos' 202s '/usr/share/augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_exon_probs.pbl' -> './config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_igenic_probs.pbl' -> './config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_intron_probs.pbl' -> './config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.cfg' -> './config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.cfg' 202s '/usr/share/augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.cgp.cfg' -> './config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.utr.cfg' -> './config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_parameters.cfg' -> './config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_parameters.cfg' 202s '/usr/share/augustus/config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_weightmatrix.txt' -> './config/species/Bathycoccus_prasinos/Bathycoccus_prasinos_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Bathycoccus_prasinos/README.txt' -> './config/species/Bathycoccus_prasinos/README.txt' 202s '/usr/share/augustus/config/species/Berviolum_minutum' -> './config/species/Berviolum_minutum' 202s '/usr/share/augustus/config/species/Berviolum_minutum/Berviolum_minutum_exon_probs.pbl' -> './config/species/Berviolum_minutum/Berviolum_minutum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Berviolum_minutum/Berviolum_minutum_igenic_probs.pbl' -> './config/species/Berviolum_minutum/Berviolum_minutum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Berviolum_minutum/Berviolum_minutum_intron_probs.pbl' -> './config/species/Berviolum_minutum/Berviolum_minutum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Berviolum_minutum/Berviolum_minutum_metapars.cfg' -> './config/species/Berviolum_minutum/Berviolum_minutum_metapars.cfg' 202s '/usr/share/augustus/config/species/Berviolum_minutum/Berviolum_minutum_metapars.cgp.cfg' -> './config/species/Berviolum_minutum/Berviolum_minutum_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Berviolum_minutum/Berviolum_minutum_metapars.utr.cfg' -> './config/species/Berviolum_minutum/Berviolum_minutum_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Berviolum_minutum/Berviolum_minutum_parameters.cfg' -> './config/species/Berviolum_minutum/Berviolum_minutum_parameters.cfg' 202s '/usr/share/augustus/config/species/Berviolum_minutum/Berviolum_minutum_weightmatrix.txt' -> './config/species/Berviolum_minutum/Berviolum_minutum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Berviolum_minutum/README.txt' -> './config/species/Berviolum_minutum/README.txt' 202s '/usr/share/augustus/config/species/Branchiostoma_floridae' -> './config/species/Branchiostoma_floridae' 202s '/usr/share/augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_exon_probs.pbl' -> './config/species/Branchiostoma_floridae/Branchiostoma_floridae_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_igenic_probs.pbl' -> './config/species/Branchiostoma_floridae/Branchiostoma_floridae_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_intron_probs.pbl' -> './config/species/Branchiostoma_floridae/Branchiostoma_floridae_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.cfg' -> './config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.cfg' 202s '/usr/share/augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.cgp.cfg' -> './config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.utr.cfg' -> './config/species/Branchiostoma_floridae/Branchiostoma_floridae_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_parameters.cfg' -> './config/species/Branchiostoma_floridae/Branchiostoma_floridae_parameters.cfg' 202s '/usr/share/augustus/config/species/Branchiostoma_floridae/Branchiostoma_floridae_weightmatrix.txt' -> './config/species/Branchiostoma_floridae/Branchiostoma_floridae_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Branchiostoma_floridae/README.txt' -> './config/species/Branchiostoma_floridae/README.txt' 202s '/usr/share/augustus/config/species/Cassiopea_xamachana' -> './config/species/Cassiopea_xamachana' 202s '/usr/share/augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_exon_probs.pbl' -> './config/species/Cassiopea_xamachana/Cassiopea_xamachana_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_igenic_probs.pbl' -> './config/species/Cassiopea_xamachana/Cassiopea_xamachana_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_intron_probs.pbl' -> './config/species/Cassiopea_xamachana/Cassiopea_xamachana_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.cfg' -> './config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.cfg' 202s '/usr/share/augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.cgp.cfg' -> './config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.utr.cfg' -> './config/species/Cassiopea_xamachana/Cassiopea_xamachana_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_parameters.cfg' -> './config/species/Cassiopea_xamachana/Cassiopea_xamachana_parameters.cfg' 202s '/usr/share/augustus/config/species/Cassiopea_xamachana/Cassiopea_xamachana_weightmatrix.txt' -> './config/species/Cassiopea_xamachana/Cassiopea_xamachana_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Chlamydomonas_eustigma' -> './config/species/Chlamydomonas_eustigma' 202s '/usr/share/augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_exon_probs.pbl' -> './config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_igenic_probs.pbl' -> './config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_intron_probs.pbl' -> './config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.cfg' -> './config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.cfg' 202s '/usr/share/augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.cgp.cfg' -> './config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.utr.cfg' -> './config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_parameters.cfg' -> './config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_parameters.cfg' 202s '/usr/share/augustus/config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_weightmatrix.txt' -> './config/species/Chlamydomonas_eustigma/Chlamydomonas_eustigma_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Chlamydomonas_eustigma/README.txt' -> './config/species/Chlamydomonas_eustigma/README.txt' 202s '/usr/share/augustus/config/species/Chloropicon_primus' -> './config/species/Chloropicon_primus' 202s '/usr/share/augustus/config/species/Chloropicon_primus/Chloropicon_primus_exon_probs.pbl' -> './config/species/Chloropicon_primus/Chloropicon_primus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Chloropicon_primus/Chloropicon_primus_igenic_probs.pbl' -> './config/species/Chloropicon_primus/Chloropicon_primus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Chloropicon_primus/Chloropicon_primus_intron_probs.pbl' -> './config/species/Chloropicon_primus/Chloropicon_primus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Chloropicon_primus/Chloropicon_primus_metapars.cfg' -> './config/species/Chloropicon_primus/Chloropicon_primus_metapars.cfg' 202s '/usr/share/augustus/config/species/Chloropicon_primus/Chloropicon_primus_metapars.cgp.cfg' -> './config/species/Chloropicon_primus/Chloropicon_primus_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Chloropicon_primus/Chloropicon_primus_metapars.utr.cfg' -> './config/species/Chloropicon_primus/Chloropicon_primus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Chloropicon_primus/Chloropicon_primus_parameters.cfg' -> './config/species/Chloropicon_primus/Chloropicon_primus_parameters.cfg' 202s '/usr/share/augustus/config/species/Chloropicon_primus/Chloropicon_primus_weightmatrix.txt' -> './config/species/Chloropicon_primus/Chloropicon_primus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Chloropicon_primus/README.txt' -> './config/species/Chloropicon_primus/README.txt' 202s '/usr/share/augustus/config/species/Chrysaora_chesapeakei' -> './config/species/Chrysaora_chesapeakei' 202s '/usr/share/augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_exon_probs.pbl' -> './config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_igenic_probs.pbl' -> './config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_intron_probs.pbl' -> './config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.cfg' -> './config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.cfg' 202s '/usr/share/augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.cgp.cfg' -> './config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.utr.cfg' -> './config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_parameters.cfg' -> './config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_parameters.cfg' 202s '/usr/share/augustus/config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_weightmatrix.txt' -> './config/species/Chrysaora_chesapeakei/Chrysaora_chesapeakei_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Chrysaora_chesapeakei/README.txt' -> './config/species/Chrysaora_chesapeakei/README.txt' 202s '/usr/share/augustus/config/species/Conidiobolus_coronatus' -> './config/species/Conidiobolus_coronatus' 202s '/usr/share/augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_exon_probs.pbl' -> './config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_igenic_probs.pbl' -> './config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_intron_probs.pbl' -> './config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.cfg' -> './config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.cfg' 202s '/usr/share/augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.utr.cfg' -> './config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_parameters.cfg' -> './config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_parameters.cfg' 202s '/usr/share/augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_utr_probs.pbl' -> './config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_utr_probs.pbl' 202s '/usr/share/augustus/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_weightmatrix.txt' -> './config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Cryptosporidium_hominis' -> './config/species/Cryptosporidium_hominis' 202s '/usr/share/augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_exon_probs.pbl' -> './config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_igenic_probs.pbl' -> './config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_intron_probs.pbl' -> './config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.cfg' -> './config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.cfg' 202s '/usr/share/augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.cgp.cfg' -> './config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.utr.cfg' -> './config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_parameters.cfg' -> './config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_parameters.cfg' 202s '/usr/share/augustus/config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_weightmatrix.txt' -> './config/species/Cryptosporidium_hominis/Cryptosporidium_hominis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Cryptosporidium_hominis/README.txt' -> './config/species/Cryptosporidium_hominis/README.txt' 202s '/usr/share/augustus/config/species/Cyclotella_cryptica' -> './config/species/Cyclotella_cryptica' 202s '/usr/share/augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_exon_probs.pbl' -> './config/species/Cyclotella_cryptica/Cyclotella_cryptica_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_igenic_probs.pbl' -> './config/species/Cyclotella_cryptica/Cyclotella_cryptica_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_intron_probs.pbl' -> './config/species/Cyclotella_cryptica/Cyclotella_cryptica_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.cfg' -> './config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.cfg' 202s '/usr/share/augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.cgp.cfg' -> './config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.utr.cfg' -> './config/species/Cyclotella_cryptica/Cyclotella_cryptica_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_parameters.cfg' -> './config/species/Cyclotella_cryptica/Cyclotella_cryptica_parameters.cfg' 202s '/usr/share/augustus/config/species/Cyclotella_cryptica/Cyclotella_cryptica_weightmatrix.txt' -> './config/species/Cyclotella_cryptica/Cyclotella_cryptica_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Cyclotella_cryptica/README.txt' -> './config/species/Cyclotella_cryptica/README.txt' 202s '/usr/share/augustus/config/species/Dermasterias_imbricata' -> './config/species/Dermasterias_imbricata' 202s '/usr/share/augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_exon_probs.pbl' -> './config/species/Dermasterias_imbricata/Dermasterias_imbricata_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_igenic_probs.pbl' -> './config/species/Dermasterias_imbricata/Dermasterias_imbricata_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_intron_probs.pbl' -> './config/species/Dermasterias_imbricata/Dermasterias_imbricata_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.cfg' -> './config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.cfg' 202s '/usr/share/augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.cgp.cfg' -> './config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.utr.cfg' -> './config/species/Dermasterias_imbricata/Dermasterias_imbricata_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_parameters.cfg' -> './config/species/Dermasterias_imbricata/Dermasterias_imbricata_parameters.cfg' 202s '/usr/share/augustus/config/species/Dermasterias_imbricata/Dermasterias_imbricata_weightmatrix.txt' -> './config/species/Dermasterias_imbricata/Dermasterias_imbricata_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Dermasterias_imbricata/README.txt' -> './config/species/Dermasterias_imbricata/README.txt' 202s '/usr/share/augustus/config/species/Dunaliella_salina' -> './config/species/Dunaliella_salina' 202s '/usr/share/augustus/config/species/Dunaliella_salina/Dunaliella_salina_exon_probs.pbl' -> './config/species/Dunaliella_salina/Dunaliella_salina_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Dunaliella_salina/Dunaliella_salina_igenic_probs.pbl' -> './config/species/Dunaliella_salina/Dunaliella_salina_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Dunaliella_salina/Dunaliella_salina_intron_probs.pbl' -> './config/species/Dunaliella_salina/Dunaliella_salina_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Dunaliella_salina/Dunaliella_salina_metapars.cfg' -> './config/species/Dunaliella_salina/Dunaliella_salina_metapars.cfg' 202s '/usr/share/augustus/config/species/Dunaliella_salina/Dunaliella_salina_metapars.cgp.cfg' -> './config/species/Dunaliella_salina/Dunaliella_salina_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Dunaliella_salina/Dunaliella_salina_metapars.utr.cfg' -> './config/species/Dunaliella_salina/Dunaliella_salina_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Dunaliella_salina/Dunaliella_salina_parameters.cfg' -> './config/species/Dunaliella_salina/Dunaliella_salina_parameters.cfg' 202s '/usr/share/augustus/config/species/Dunaliella_salina/Dunaliella_salina_weightmatrix.txt' -> './config/species/Dunaliella_salina/Dunaliella_salina_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Dunaliella_salina/README.txt' -> './config/species/Dunaliella_salina/README.txt' 202s '/usr/share/augustus/config/species/E_coli_K12' -> './config/species/E_coli_K12' 202s '/usr/share/augustus/config/species/E_coli_K12/E_coli_K12_exon_probs.pbl' -> './config/species/E_coli_K12/E_coli_K12_exon_probs.pbl' 202s '/usr/share/augustus/config/species/E_coli_K12/E_coli_K12_igenic_probs.pbl' -> './config/species/E_coli_K12/E_coli_K12_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/E_coli_K12/E_coli_K12_metapars.cfg' -> './config/species/E_coli_K12/E_coli_K12_metapars.cfg' 202s '/usr/share/augustus/config/species/E_coli_K12/E_coli_K12_metapars.utr.cfg' -> './config/species/E_coli_K12/E_coli_K12_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/E_coli_K12/E_coli_K12_ovlp_len.pbl' -> './config/species/E_coli_K12/E_coli_K12_ovlp_len.pbl' 202s '/usr/share/augustus/config/species/E_coli_K12/E_coli_K12_parameters.cfg' -> './config/species/E_coli_K12/E_coli_K12_parameters.cfg' 202s '/usr/share/augustus/config/species/E_coli_K12/E_coli_K12_trans_shadow_bacterium.pbl' -> './config/species/E_coli_K12/E_coli_K12_trans_shadow_bacterium.pbl' 202s '/usr/share/augustus/config/species/E_coli_K12/E_coli_K12_weightmatrix.txt' -> './config/species/E_coli_K12/E_coli_K12_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Ectocarpus_siliculosus' -> './config/species/Ectocarpus_siliculosus' 202s '/usr/share/augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_exon_probs.pbl' -> './config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_igenic_probs.pbl' -> './config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_intron_probs.pbl' -> './config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.cfg' -> './config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.cfg' 202s '/usr/share/augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.cgp.cfg' -> './config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.utr.cfg' -> './config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_parameters.cfg' -> './config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_parameters.cfg' 202s '/usr/share/augustus/config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_weightmatrix.txt' -> './config/species/Ectocarpus_siliculosus/Ectocarpus_siliculosus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Ectocarpus_siliculosus/README.txt' -> './config/species/Ectocarpus_siliculosus/README.txt' 202s '/usr/share/augustus/config/species/Encephalitozoon_cuniculi' -> './config/species/Encephalitozoon_cuniculi' 202s '/usr/share/augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_exon_probs.pbl' -> './config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_igenic_probs.pbl' -> './config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_intron_probs.pbl' -> './config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.cfg' -> './config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.cfg' 202s '/usr/share/augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.cgp.cfg' -> './config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.utr.cfg' -> './config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_parameters.cfg' -> './config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_parameters.cfg' 202s '/usr/share/augustus/config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_weightmatrix.txt' -> './config/species/Encephalitozoon_cuniculi/Encephalitozoon_cuniculi_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Encephalitozoon_cuniculi/README.txt' -> './config/species/Encephalitozoon_cuniculi/README.txt' 202s '/usr/share/augustus/config/species/Fistulifera_solaris' -> './config/species/Fistulifera_solaris' 202s '/usr/share/augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_exon_probs.pbl' -> './config/species/Fistulifera_solaris/Fistulifera_solaris_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_igenic_probs.pbl' -> './config/species/Fistulifera_solaris/Fistulifera_solaris_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_intron_probs.pbl' -> './config/species/Fistulifera_solaris/Fistulifera_solaris_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.cfg' -> './config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.cfg' 202s '/usr/share/augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.cgp.cfg' -> './config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.utr.cfg' -> './config/species/Fistulifera_solaris/Fistulifera_solaris_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_parameters.cfg' -> './config/species/Fistulifera_solaris/Fistulifera_solaris_parameters.cfg' 202s '/usr/share/augustus/config/species/Fistulifera_solaris/Fistulifera_solaris_weightmatrix.txt' -> './config/species/Fistulifera_solaris/Fistulifera_solaris_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Fistulifera_solaris/README.txt' -> './config/species/Fistulifera_solaris/README.txt' 202s '/usr/share/augustus/config/species/Fragilariopsis_cylindrus_CCMP1102' -> './config/species/Fragilariopsis_cylindrus_CCMP1102' 202s '/usr/share/augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_exon_probs.pbl' -> './config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_igenic_probs.pbl' -> './config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_intron_probs.pbl' -> './config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.cfg' -> './config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.cfg' 202s '/usr/share/augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.cgp.cfg' -> './config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.utr.cfg' -> './config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_parameters.cfg' -> './config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_parameters.cfg' 202s '/usr/share/augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_weightmatrix.txt' -> './config/species/Fragilariopsis_cylindrus_CCMP1102/Fragilariopsis_cylindrus_CCMP1102_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Fragilariopsis_cylindrus_CCMP1102/README.txt' -> './config/species/Fragilariopsis_cylindrus_CCMP1102/README.txt' 202s '/usr/share/augustus/config/species/Gonapodya_prolifera' -> './config/species/Gonapodya_prolifera' 202s '/usr/share/augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_exon_probs.pbl' -> './config/species/Gonapodya_prolifera/Gonapodya_prolifera_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_igenic_probs.pbl' -> './config/species/Gonapodya_prolifera/Gonapodya_prolifera_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_intron_probs.pbl' -> './config/species/Gonapodya_prolifera/Gonapodya_prolifera_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.cfg' -> './config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.cfg' 202s '/usr/share/augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.cgp.cfg' -> './config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.utr.cfg' -> './config/species/Gonapodya_prolifera/Gonapodya_prolifera_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_parameters.cfg' -> './config/species/Gonapodya_prolifera/Gonapodya_prolifera_parameters.cfg' 202s '/usr/share/augustus/config/species/Gonapodya_prolifera/Gonapodya_prolifera_weightmatrix.txt' -> './config/species/Gonapodya_prolifera/Gonapodya_prolifera_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Gonapodya_prolifera/README.txt' -> './config/species/Gonapodya_prolifera/README.txt' 202s '/usr/share/augustus/config/species/Hydra_vulgaris' -> './config/species/Hydra_vulgaris' 202s '/usr/share/augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_exon_probs.pbl' -> './config/species/Hydra_vulgaris/Hydra_vulgaris_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_igenic_probs.pbl' -> './config/species/Hydra_vulgaris/Hydra_vulgaris_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_intron_probs.pbl' -> './config/species/Hydra_vulgaris/Hydra_vulgaris_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.cfg' -> './config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.cfg' 202s '/usr/share/augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.cgp.cfg' -> './config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.utr.cfg' -> './config/species/Hydra_vulgaris/Hydra_vulgaris_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_parameters.cfg' -> './config/species/Hydra_vulgaris/Hydra_vulgaris_parameters.cfg' 202s '/usr/share/augustus/config/species/Hydra_vulgaris/Hydra_vulgaris_weightmatrix.txt' -> './config/species/Hydra_vulgaris/Hydra_vulgaris_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Hydra_vulgaris/README.txt' -> './config/species/Hydra_vulgaris/README.txt' 202s '/usr/share/augustus/config/species/Leptasterias_sp' -> './config/species/Leptasterias_sp' 202s '/usr/share/augustus/config/species/Leptasterias_sp/Leptasterias_sp_exon_probs.pbl' -> './config/species/Leptasterias_sp/Leptasterias_sp_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Leptasterias_sp/Leptasterias_sp_igenic_probs.pbl' -> './config/species/Leptasterias_sp/Leptasterias_sp_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Leptasterias_sp/Leptasterias_sp_intron_probs.pbl' -> './config/species/Leptasterias_sp/Leptasterias_sp_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Leptasterias_sp/Leptasterias_sp_metapars.cfg' -> './config/species/Leptasterias_sp/Leptasterias_sp_metapars.cfg' 202s '/usr/share/augustus/config/species/Leptasterias_sp/Leptasterias_sp_metapars.cgp.cfg' -> './config/species/Leptasterias_sp/Leptasterias_sp_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Leptasterias_sp/Leptasterias_sp_metapars.utr.cfg' -> './config/species/Leptasterias_sp/Leptasterias_sp_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Leptasterias_sp/Leptasterias_sp_parameters.cfg' -> './config/species/Leptasterias_sp/Leptasterias_sp_parameters.cfg' 202s '/usr/share/augustus/config/species/Leptasterias_sp/Leptasterias_sp_weightmatrix.txt' -> './config/species/Leptasterias_sp/Leptasterias_sp_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Leptasterias_sp/README.txt' -> './config/species/Leptasterias_sp/README.txt' 202s '/usr/share/augustus/config/species/Loa_loa' -> './config/species/Loa_loa' 202s '/usr/share/augustus/config/species/Loa_loa/Loa_loa_exon_probs.pbl' -> './config/species/Loa_loa/Loa_loa_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Loa_loa/Loa_loa_igenic_probs.pbl' -> './config/species/Loa_loa/Loa_loa_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Loa_loa/Loa_loa_intron_probs.pbl' -> './config/species/Loa_loa/Loa_loa_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Loa_loa/Loa_loa_metapars.cfg' -> './config/species/Loa_loa/Loa_loa_metapars.cfg' 202s '/usr/share/augustus/config/species/Loa_loa/Loa_loa_metapars.cgp.cfg' -> './config/species/Loa_loa/Loa_loa_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Loa_loa/Loa_loa_metapars.utr.cfg' -> './config/species/Loa_loa/Loa_loa_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Loa_loa/Loa_loa_parameters.cfg' -> './config/species/Loa_loa/Loa_loa_parameters.cfg' 202s '/usr/share/augustus/config/species/Loa_loa/Loa_loa_weightmatrix.txt' -> './config/species/Loa_loa/Loa_loa_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Loa_loa/README.txt' -> './config/species/Loa_loa/README.txt' 202s '/usr/share/augustus/config/species/Micromonas_commoda' -> './config/species/Micromonas_commoda' 202s '/usr/share/augustus/config/species/Micromonas_commoda/Micromonas_commoda_exon_probs.pbl' -> './config/species/Micromonas_commoda/Micromonas_commoda_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Micromonas_commoda/Micromonas_commoda_igenic_probs.pbl' -> './config/species/Micromonas_commoda/Micromonas_commoda_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Micromonas_commoda/Micromonas_commoda_intron_probs.pbl' -> './config/species/Micromonas_commoda/Micromonas_commoda_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Micromonas_commoda/Micromonas_commoda_metapars.cfg' -> './config/species/Micromonas_commoda/Micromonas_commoda_metapars.cfg' 202s '/usr/share/augustus/config/species/Micromonas_commoda/Micromonas_commoda_metapars.cgp.cfg' -> './config/species/Micromonas_commoda/Micromonas_commoda_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Micromonas_commoda/Micromonas_commoda_metapars.utr.cfg' -> './config/species/Micromonas_commoda/Micromonas_commoda_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Micromonas_commoda/Micromonas_commoda_parameters.cfg' -> './config/species/Micromonas_commoda/Micromonas_commoda_parameters.cfg' 202s '/usr/share/augustus/config/species/Micromonas_commoda/Micromonas_commoda_weightmatrix.txt' -> './config/species/Micromonas_commoda/Micromonas_commoda_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Micromonas_commoda/README.txt' -> './config/species/Micromonas_commoda/README.txt' 202s '/usr/share/augustus/config/species/Micromonas_pusilla' -> './config/species/Micromonas_pusilla' 202s '/usr/share/augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_exon_probs.pbl' -> './config/species/Micromonas_pusilla/Micromonas_pusilla_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_igenic_probs.pbl' -> './config/species/Micromonas_pusilla/Micromonas_pusilla_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_intron_probs.pbl' -> './config/species/Micromonas_pusilla/Micromonas_pusilla_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.cfg' -> './config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.cfg' 202s '/usr/share/augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.cgp.cfg' -> './config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.utr.cfg' -> './config/species/Micromonas_pusilla/Micromonas_pusilla_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_parameters.cfg' -> './config/species/Micromonas_pusilla/Micromonas_pusilla_parameters.cfg' 202s '/usr/share/augustus/config/species/Micromonas_pusilla/Micromonas_pusilla_weightmatrix.txt' -> './config/species/Micromonas_pusilla/Micromonas_pusilla_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Micromonas_pusilla/README.txt' -> './config/species/Micromonas_pusilla/README.txt' 202s '/usr/share/augustus/config/species/Monoraphidium_neglectum' -> './config/species/Monoraphidium_neglectum' 202s '/usr/share/augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_exon_probs.pbl' -> './config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_igenic_probs.pbl' -> './config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_intron_probs.pbl' -> './config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.cfg' -> './config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.cfg' 202s '/usr/share/augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.cgp.cfg' -> './config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.utr.cfg' -> './config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_parameters.cfg' -> './config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_parameters.cfg' 202s '/usr/share/augustus/config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_weightmatrix.txt' -> './config/species/Monoraphidium_neglectum/Monoraphidium_neglectum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Monoraphidium_neglectum/README.txt' -> './config/species/Monoraphidium_neglectum/README.txt' 202s '/usr/share/augustus/config/species/Monosiga_brevicollis' -> './config/species/Monosiga_brevicollis' 202s '/usr/share/augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_exon_probs.pbl' -> './config/species/Monosiga_brevicollis/Monosiga_brevicollis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_igenic_probs.pbl' -> './config/species/Monosiga_brevicollis/Monosiga_brevicollis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_intron_probs.pbl' -> './config/species/Monosiga_brevicollis/Monosiga_brevicollis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.cfg' -> './config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.cfg' 202s '/usr/share/augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.cgp.cfg' -> './config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.utr.cfg' -> './config/species/Monosiga_brevicollis/Monosiga_brevicollis_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_parameters.cfg' -> './config/species/Monosiga_brevicollis/Monosiga_brevicollis_parameters.cfg' 202s '/usr/share/augustus/config/species/Monosiga_brevicollis/Monosiga_brevicollis_weightmatrix.txt' -> './config/species/Monosiga_brevicollis/Monosiga_brevicollis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Monosiga_brevicollis/README.txt' -> './config/species/Monosiga_brevicollis/README.txt' 202s '/usr/share/augustus/config/species/Naegleria_gruberi' -> './config/species/Naegleria_gruberi' 202s '/usr/share/augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_exon_probs.pbl' -> './config/species/Naegleria_gruberi/Naegleria_gruberi_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_igenic_probs.pbl' -> './config/species/Naegleria_gruberi/Naegleria_gruberi_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_intron_probs.pbl' -> './config/species/Naegleria_gruberi/Naegleria_gruberi_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.cfg' -> './config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.cfg' 202s '/usr/share/augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.cgp.cfg' -> './config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.utr.cfg' -> './config/species/Naegleria_gruberi/Naegleria_gruberi_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_parameters.cfg' -> './config/species/Naegleria_gruberi/Naegleria_gruberi_parameters.cfg' 202s '/usr/share/augustus/config/species/Naegleria_gruberi/Naegleria_gruberi_weightmatrix.txt' -> './config/species/Naegleria_gruberi/Naegleria_gruberi_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Naegleria_gruberi/README.txt' -> './config/species/Naegleria_gruberi/README.txt' 202s '/usr/share/augustus/config/species/Nemopilema_nomurai' -> './config/species/Nemopilema_nomurai' 202s '/usr/share/augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_exon_probs.pbl' -> './config/species/Nemopilema_nomurai/Nemopilema_nomurai_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_igenic_probs.pbl' -> './config/species/Nemopilema_nomurai/Nemopilema_nomurai_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_intron_probs.pbl' -> './config/species/Nemopilema_nomurai/Nemopilema_nomurai_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.cfg' -> './config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.cfg' 202s '/usr/share/augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.cgp.cfg' -> './config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.utr.cfg' -> './config/species/Nemopilema_nomurai/Nemopilema_nomurai_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_parameters.cfg' -> './config/species/Nemopilema_nomurai/Nemopilema_nomurai_parameters.cfg' 202s '/usr/share/augustus/config/species/Nemopilema_nomurai/Nemopilema_nomurai_weightmatrix.txt' -> './config/species/Nemopilema_nomurai/Nemopilema_nomurai_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Nemopilema_nomurai/README.txt' -> './config/species/Nemopilema_nomurai/README.txt' 202s '/usr/share/augustus/config/species/Notospermus_geniculatus' -> './config/species/Notospermus_geniculatus' 202s '/usr/share/augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_exon_probs.pbl' -> './config/species/Notospermus_geniculatus/Notospermus_geniculatus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_igenic_probs.pbl' -> './config/species/Notospermus_geniculatus/Notospermus_geniculatus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_intron_probs.pbl' -> './config/species/Notospermus_geniculatus/Notospermus_geniculatus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.cfg' -> './config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.cfg' 202s '/usr/share/augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.cgp.cfg' -> './config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.utr.cfg' -> './config/species/Notospermus_geniculatus/Notospermus_geniculatus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_parameters.cfg' -> './config/species/Notospermus_geniculatus/Notospermus_geniculatus_parameters.cfg' 202s '/usr/share/augustus/config/species/Notospermus_geniculatus/Notospermus_geniculatus_weightmatrix.txt' -> './config/species/Notospermus_geniculatus/Notospermus_geniculatus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Notospermus_geniculatus/README.txt' -> './config/species/Notospermus_geniculatus/README.txt' 202s '/usr/share/augustus/config/species/Ostreococcus_sp_lucimarinus' -> './config/species/Ostreococcus_sp_lucimarinus' 202s '/usr/share/augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_exon_probs.pbl' -> './config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_igenic_probs.pbl' -> './config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_intron_probs.pbl' -> './config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.cfg' -> './config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.cfg' 202s '/usr/share/augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.cgp.cfg' -> './config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.utr.cfg' -> './config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_parameters.cfg' -> './config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_parameters.cfg' 202s '/usr/share/augustus/config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_weightmatrix.txt' -> './config/species/Ostreococcus_sp_lucimarinus/Ostreococcus_sp_lucimarinus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Ostreococcus_sp_lucimarinus/README.txt' -> './config/species/Ostreococcus_sp_lucimarinus/README.txt' 202s '/usr/share/augustus/config/species/Ostreococcus_tauri' -> './config/species/Ostreococcus_tauri' 202s '/usr/share/augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_exon_probs.pbl' -> './config/species/Ostreococcus_tauri/Ostreococcus_tauri_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_igenic_probs.pbl' -> './config/species/Ostreococcus_tauri/Ostreococcus_tauri_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_intron_probs.pbl' -> './config/species/Ostreococcus_tauri/Ostreococcus_tauri_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.cfg' -> './config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.cfg' 202s '/usr/share/augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.cgp.cfg' -> './config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.utr.cfg' -> './config/species/Ostreococcus_tauri/Ostreococcus_tauri_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_parameters.cfg' -> './config/species/Ostreococcus_tauri/Ostreococcus_tauri_parameters.cfg' 202s '/usr/share/augustus/config/species/Ostreococcus_tauri/Ostreococcus_tauri_weightmatrix.txt' -> './config/species/Ostreococcus_tauri/Ostreococcus_tauri_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Ostreococcus_tauri/README.txt' -> './config/species/Ostreococcus_tauri/README.txt' 202s '/usr/share/augustus/config/species/Paramecium_tetraurelia' -> './config/species/Paramecium_tetraurelia' 202s '/usr/share/augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_exon_probs.pbl' -> './config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_igenic_probs.pbl' -> './config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_intron_probs.pbl' -> './config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.cfg' -> './config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.cfg' 202s '/usr/share/augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.cgp.cfg' -> './config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.utr.cfg' -> './config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_parameters.cfg' -> './config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_parameters.cfg' 202s '/usr/share/augustus/config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_weightmatrix.txt' -> './config/species/Paramecium_tetraurelia/Paramecium_tetraurelia_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Paramecium_tetraurelia/README.txt' -> './config/species/Paramecium_tetraurelia/README.txt' 202s '/usr/share/augustus/config/species/Pediculus_humanus' -> './config/species/Pediculus_humanus' 202s '/usr/share/augustus/config/species/Pediculus_humanus/Pediculus_humanus_exon_probs.pbl' -> './config/species/Pediculus_humanus/Pediculus_humanus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Pediculus_humanus/Pediculus_humanus_igenic_probs.pbl' -> './config/species/Pediculus_humanus/Pediculus_humanus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Pediculus_humanus/Pediculus_humanus_intron_probs.pbl' -> './config/species/Pediculus_humanus/Pediculus_humanus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Pediculus_humanus/Pediculus_humanus_metapars.cfg' -> './config/species/Pediculus_humanus/Pediculus_humanus_metapars.cfg' 202s '/usr/share/augustus/config/species/Pediculus_humanus/Pediculus_humanus_metapars.cgp.cfg' -> './config/species/Pediculus_humanus/Pediculus_humanus_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Pediculus_humanus/Pediculus_humanus_metapars.utr.cfg' -> './config/species/Pediculus_humanus/Pediculus_humanus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Pediculus_humanus/Pediculus_humanus_parameters.cfg' -> './config/species/Pediculus_humanus/Pediculus_humanus_parameters.cfg' 202s '/usr/share/augustus/config/species/Pediculus_humanus/Pediculus_humanus_weightmatrix.txt' -> './config/species/Pediculus_humanus/Pediculus_humanus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Pediculus_humanus/README.txt' -> './config/species/Pediculus_humanus/README.txt' 202s '/usr/share/augustus/config/species/Perkinsus_marinus' -> './config/species/Perkinsus_marinus' 202s '/usr/share/augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_exon_probs.pbl' -> './config/species/Perkinsus_marinus/Perkinsus_marinus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_igenic_probs.pbl' -> './config/species/Perkinsus_marinus/Perkinsus_marinus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_intron_probs.pbl' -> './config/species/Perkinsus_marinus/Perkinsus_marinus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.cfg' -> './config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.cfg' 202s '/usr/share/augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.cgp.cfg' -> './config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.utr.cfg' -> './config/species/Perkinsus_marinus/Perkinsus_marinus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_parameters.cfg' -> './config/species/Perkinsus_marinus/Perkinsus_marinus_parameters.cfg' 202s '/usr/share/augustus/config/species/Perkinsus_marinus/Perkinsus_marinus_weightmatrix.txt' -> './config/species/Perkinsus_marinus/Perkinsus_marinus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Perkinsus_marinus/README.txt' -> './config/species/Perkinsus_marinus/README.txt' 202s '/usr/share/augustus/config/species/Phaeodactylum_tricornutum' -> './config/species/Phaeodactylum_tricornutum' 202s '/usr/share/augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_exon_probs.pbl' -> './config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_igenic_probs.pbl' -> './config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_intron_probs.pbl' -> './config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.cfg' -> './config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.cfg' 202s '/usr/share/augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.cgp.cfg' -> './config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.utr.cfg' -> './config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_parameters.cfg' -> './config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_parameters.cfg' 202s '/usr/share/augustus/config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_weightmatrix.txt' -> './config/species/Phaeodactylum_tricornutum/Phaeodactylum_tricornutum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Phaeodactylum_tricornutum/README.txt' -> './config/species/Phaeodactylum_tricornutum/README.txt' 202s '/usr/share/augustus/config/species/Physcomitrium_patens' -> './config/species/Physcomitrium_patens' 202s '/usr/share/augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_exon_probs.pbl' -> './config/species/Physcomitrium_patens/Physcomitrium_patens_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_igenic_probs.pbl' -> './config/species/Physcomitrium_patens/Physcomitrium_patens_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_intron_probs.pbl' -> './config/species/Physcomitrium_patens/Physcomitrium_patens_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.cfg' -> './config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.cfg' 202s '/usr/share/augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.cgp.cfg' -> './config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.utr.cfg' -> './config/species/Physcomitrium_patens/Physcomitrium_patens_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_parameters.cfg' -> './config/species/Physcomitrium_patens/Physcomitrium_patens_parameters.cfg' 202s '/usr/share/augustus/config/species/Physcomitrium_patens/Physcomitrium_patens_weightmatrix.txt' -> './config/species/Physcomitrium_patens/Physcomitrium_patens_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Physcomitrium_patens/README.txt' -> './config/species/Physcomitrium_patens/README.txt' 202s '/usr/share/augustus/config/species/Populus_trichocarpa' -> './config/species/Populus_trichocarpa' 202s '/usr/share/augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_exon_probs.pbl' -> './config/species/Populus_trichocarpa/Populus_trichocarpa_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_igenic_probs.pbl' -> './config/species/Populus_trichocarpa/Populus_trichocarpa_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_intron_probs.pbl' -> './config/species/Populus_trichocarpa/Populus_trichocarpa_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.cfg' -> './config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.cfg' 202s '/usr/share/augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.cgp.cfg' -> './config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.utr.cfg' -> './config/species/Populus_trichocarpa/Populus_trichocarpa_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_parameters.cfg' -> './config/species/Populus_trichocarpa/Populus_trichocarpa_parameters.cfg' 202s '/usr/share/augustus/config/species/Populus_trichocarpa/Populus_trichocarpa_weightmatrix.txt' -> './config/species/Populus_trichocarpa/Populus_trichocarpa_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Pseudo-nitzschia_multistriata' -> './config/species/Pseudo-nitzschia_multistriata' 202s '/usr/share/augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_exon_probs.pbl' -> './config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_igenic_probs.pbl' -> './config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_intron_probs.pbl' -> './config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.cfg' -> './config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.cfg' 202s '/usr/share/augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.cgp.cfg' -> './config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.utr.cfg' -> './config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_parameters.cfg' -> './config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_parameters.cfg' 202s '/usr/share/augustus/config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_weightmatrix.txt' -> './config/species/Pseudo-nitzschia_multistriata/Pseudo-nitzschia_multistriata_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Pseudo-nitzschia_multistriata/README.txt' -> './config/species/Pseudo-nitzschia_multistriata/README.txt' 202s '/usr/share/augustus/config/species/Ptychodera_flava' -> './config/species/Ptychodera_flava' 202s '/usr/share/augustus/config/species/Ptychodera_flava/Ptychodera_flava_exon_probs.pbl' -> './config/species/Ptychodera_flava/Ptychodera_flava_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Ptychodera_flava/Ptychodera_flava_igenic_probs.pbl' -> './config/species/Ptychodera_flava/Ptychodera_flava_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Ptychodera_flava/Ptychodera_flava_intron_probs.pbl' -> './config/species/Ptychodera_flava/Ptychodera_flava_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Ptychodera_flava/Ptychodera_flava_metapars.cfg' -> './config/species/Ptychodera_flava/Ptychodera_flava_metapars.cfg' 202s '/usr/share/augustus/config/species/Ptychodera_flava/Ptychodera_flava_metapars.cgp.cfg' -> './config/species/Ptychodera_flava/Ptychodera_flava_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Ptychodera_flava/Ptychodera_flava_metapars.utr.cfg' -> './config/species/Ptychodera_flava/Ptychodera_flava_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Ptychodera_flava/Ptychodera_flava_parameters.cfg' -> './config/species/Ptychodera_flava/Ptychodera_flava_parameters.cfg' 202s '/usr/share/augustus/config/species/Ptychodera_flava/Ptychodera_flava_weightmatrix.txt' -> './config/species/Ptychodera_flava/Ptychodera_flava_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Ptychodera_flava/README.txt' -> './config/species/Ptychodera_flava/README.txt' 202s '/usr/share/augustus/config/species/Pycnopodia_helianthoides' -> './config/species/Pycnopodia_helianthoides' 202s '/usr/share/augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_exon_probs.pbl' -> './config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_igenic_probs.pbl' -> './config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_intron_probs.pbl' -> './config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.cfg' -> './config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.cfg' 202s '/usr/share/augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.cgp.cfg' -> './config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.utr.cfg' -> './config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_parameters.cfg' -> './config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_parameters.cfg' 202s '/usr/share/augustus/config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_weightmatrix.txt' -> './config/species/Pycnopodia_helianthoides/Pycnopodia_helianthoides_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Pycnopodia_helianthoides/README.txt' -> './config/species/Pycnopodia_helianthoides/README.txt' 202s '/usr/share/augustus/config/species/Raphidocelis_subcapitata' -> './config/species/Raphidocelis_subcapitata' 202s '/usr/share/augustus/config/species/Raphidocelis_subcapitata/README.txt' -> './config/species/Raphidocelis_subcapitata/README.txt' 202s '/usr/share/augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_exon_probs.pbl' -> './config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_igenic_probs.pbl' -> './config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_intron_probs.pbl' -> './config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.cfg' -> './config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.cfg' 202s '/usr/share/augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.cgp.cfg' -> './config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.utr.cfg' -> './config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_parameters.cfg' -> './config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_parameters.cfg' 202s '/usr/share/augustus/config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_weightmatrix.txt' -> './config/species/Raphidocelis_subcapitata/Raphidocelis_subcapitata_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Rhopilema_esculentum' -> './config/species/Rhopilema_esculentum' 202s '/usr/share/augustus/config/species/Rhopilema_esculentum/README.txt' -> './config/species/Rhopilema_esculentum/README.txt' 202s '/usr/share/augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_exon_probs.pbl' -> './config/species/Rhopilema_esculentum/Rhopilema_esculentum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_igenic_probs.pbl' -> './config/species/Rhopilema_esculentum/Rhopilema_esculentum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_intron_probs.pbl' -> './config/species/Rhopilema_esculentum/Rhopilema_esculentum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.cfg' -> './config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.cfg' 202s '/usr/share/augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.cgp.cfg' -> './config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.utr.cfg' -> './config/species/Rhopilema_esculentum/Rhopilema_esculentum_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_parameters.cfg' -> './config/species/Rhopilema_esculentum/Rhopilema_esculentum_parameters.cfg' 202s '/usr/share/augustus/config/species/Rhopilema_esculentum/Rhopilema_esculentum_weightmatrix.txt' -> './config/species/Rhopilema_esculentum/Rhopilema_esculentum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Ricinus_communis' -> './config/species/Ricinus_communis' 202s '/usr/share/augustus/config/species/Ricinus_communis/README.txt' -> './config/species/Ricinus_communis/README.txt' 202s '/usr/share/augustus/config/species/Ricinus_communis/Ricinus_communis_exon_probs.pbl' -> './config/species/Ricinus_communis/Ricinus_communis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Ricinus_communis/Ricinus_communis_igenic_probs.pbl' -> './config/species/Ricinus_communis/Ricinus_communis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Ricinus_communis/Ricinus_communis_intron_probs.pbl' -> './config/species/Ricinus_communis/Ricinus_communis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Ricinus_communis/Ricinus_communis_metapars.cfg' -> './config/species/Ricinus_communis/Ricinus_communis_metapars.cfg' 202s '/usr/share/augustus/config/species/Ricinus_communis/Ricinus_communis_metapars.cgp.cfg' -> './config/species/Ricinus_communis/Ricinus_communis_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Ricinus_communis/Ricinus_communis_metapars.utr.cfg' -> './config/species/Ricinus_communis/Ricinus_communis_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Ricinus_communis/Ricinus_communis_parameters.cfg' -> './config/species/Ricinus_communis/Ricinus_communis_parameters.cfg' 202s '/usr/share/augustus/config/species/Ricinus_communis/Ricinus_communis_weightmatrix.txt' -> './config/species/Ricinus_communis/Ricinus_communis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Sclerotinia_sclerotiorum' -> './config/species/Sclerotinia_sclerotiorum' 202s '/usr/share/augustus/config/species/Sclerotinia_sclerotiorum/README.txt' -> './config/species/Sclerotinia_sclerotiorum/README.txt' 202s '/usr/share/augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_exon_probs.pbl' -> './config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_igenic_probs.pbl' -> './config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_intron_probs.pbl' -> './config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.cfg' -> './config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.cfg' 202s '/usr/share/augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.cgp.cfg' -> './config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.utr.cfg' -> './config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_parameters.cfg' -> './config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_parameters.cfg' 202s '/usr/share/augustus/config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_weightmatrix.txt' -> './config/species/Sclerotinia_sclerotiorum/Sclerotinia_sclerotiorum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Skeletonema_costatum' -> './config/species/Skeletonema_costatum' 202s '/usr/share/augustus/config/species/Skeletonema_costatum/README.txt' -> './config/species/Skeletonema_costatum/README.txt' 202s '/usr/share/augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_exon_probs.pbl' -> './config/species/Skeletonema_costatum/Skeletonema_costatum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_igenic_probs.pbl' -> './config/species/Skeletonema_costatum/Skeletonema_costatum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_intron_probs.pbl' -> './config/species/Skeletonema_costatum/Skeletonema_costatum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.cfg' -> './config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.cfg' 202s '/usr/share/augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.cgp.cfg' -> './config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.utr.cfg' -> './config/species/Skeletonema_costatum/Skeletonema_costatum_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_parameters.cfg' -> './config/species/Skeletonema_costatum/Skeletonema_costatum_parameters.cfg' 202s '/usr/share/augustus/config/species/Skeletonema_costatum/Skeletonema_costatum_weightmatrix.txt' -> './config/species/Skeletonema_costatum/Skeletonema_costatum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Sordaria_macrospora' -> './config/species/Sordaria_macrospora' 202s '/usr/share/augustus/config/species/Sordaria_macrospora/README.txt' -> './config/species/Sordaria_macrospora/README.txt' 202s '/usr/share/augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_exon_probs.pbl' -> './config/species/Sordaria_macrospora/Sordaria_macrospora_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_igenic_probs.pbl' -> './config/species/Sordaria_macrospora/Sordaria_macrospora_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_intron_probs.pbl' -> './config/species/Sordaria_macrospora/Sordaria_macrospora_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.cfg' -> './config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.cfg' 202s '/usr/share/augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.cgp.cfg' -> './config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.utr.cfg' -> './config/species/Sordaria_macrospora/Sordaria_macrospora_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_parameters.cfg' -> './config/species/Sordaria_macrospora/Sordaria_macrospora_parameters.cfg' 202s '/usr/share/augustus/config/species/Sordaria_macrospora/Sordaria_macrospora_weightmatrix.txt' -> './config/species/Sordaria_macrospora/Sordaria_macrospora_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Sphaceloma_murrayae' -> './config/species/Sphaceloma_murrayae' 202s '/usr/share/augustus/config/species/Sphaceloma_murrayae/README.txt' -> './config/species/Sphaceloma_murrayae/README.txt' 202s '/usr/share/augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_exon_probs.pbl' -> './config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_igenic_probs.pbl' -> './config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_intron_probs.pbl' -> './config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.cfg' -> './config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.cfg' 202s '/usr/share/augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.cgp.cfg' -> './config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.utr.cfg' -> './config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_parameters.cfg' -> './config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_parameters.cfg' 202s '/usr/share/augustus/config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_weightmatrix.txt' -> './config/species/Sphaceloma_murrayae/Sphaceloma_murrayae_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Taeniopygia_guttata' -> './config/species/Taeniopygia_guttata' 202s '/usr/share/augustus/config/species/Taeniopygia_guttata/README.txt' -> './config/species/Taeniopygia_guttata/README.txt' 202s '/usr/share/augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_exon_probs.pbl' -> './config/species/Taeniopygia_guttata/Taeniopygia_guttata_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_igenic_probs.pbl' -> './config/species/Taeniopygia_guttata/Taeniopygia_guttata_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_intron_probs.pbl' -> './config/species/Taeniopygia_guttata/Taeniopygia_guttata_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.cfg' -> './config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.cfg' 202s '/usr/share/augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.cgp.cfg' -> './config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.utr.cfg' -> './config/species/Taeniopygia_guttata/Taeniopygia_guttata_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_parameters.cfg' -> './config/species/Taeniopygia_guttata/Taeniopygia_guttata_parameters.cfg' 202s '/usr/share/augustus/config/species/Taeniopygia_guttata/Taeniopygia_guttata_weightmatrix.txt' -> './config/species/Taeniopygia_guttata/Taeniopygia_guttata_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Thalassiosira_pseudonana_CCMP1335' -> './config/species/Thalassiosira_pseudonana_CCMP1335' 202s '/usr/share/augustus/config/species/Thalassiosira_pseudonana_CCMP1335/README.txt' -> './config/species/Thalassiosira_pseudonana_CCMP1335/README.txt' 202s '/usr/share/augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_exon_probs.pbl' -> './config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_igenic_probs.pbl' -> './config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_intron_probs.pbl' -> './config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.cfg' -> './config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.cfg' 202s '/usr/share/augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.cgp.cfg' -> './config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.utr.cfg' -> './config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_parameters.cfg' -> './config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_parameters.cfg' 202s '/usr/share/augustus/config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_weightmatrix.txt' -> './config/species/Thalassiosira_pseudonana_CCMP1335/Thalassiosira_pseudonana_CCMP1335_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Trichoplax_adhaerens' -> './config/species/Trichoplax_adhaerens' 202s '/usr/share/augustus/config/species/Trichoplax_adhaerens/README.txt' -> './config/species/Trichoplax_adhaerens/README.txt' 202s '/usr/share/augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_exon_probs.pbl' -> './config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_igenic_probs.pbl' -> './config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_intron_probs.pbl' -> './config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.cfg' -> './config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.cfg' 202s '/usr/share/augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.cgp.cfg' -> './config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.utr.cfg' -> './config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_parameters.cfg' -> './config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_parameters.cfg' 202s '/usr/share/augustus/config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_weightmatrix.txt' -> './config/species/Trichoplax_adhaerens/Trichoplax_adhaerens_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Trypanosoma_cruzi' -> './config/species/Trypanosoma_cruzi' 202s '/usr/share/augustus/config/species/Trypanosoma_cruzi/README.txt' -> './config/species/Trypanosoma_cruzi/README.txt' 202s '/usr/share/augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_exon_probs.pbl' -> './config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_igenic_probs.pbl' -> './config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_intron_probs.pbl' -> './config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.cfg' -> './config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.cfg' 202s '/usr/share/augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.cgp.cfg' -> './config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.utr.cfg' -> './config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_parameters.cfg' -> './config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_parameters.cfg' 202s '/usr/share/augustus/config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_weightmatrix.txt' -> './config/species/Trypanosoma_cruzi/Trypanosoma_cruzi_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Vitis_vinifera' -> './config/species/Vitis_vinifera' 202s '/usr/share/augustus/config/species/Vitis_vinifera/README.txt' -> './config/species/Vitis_vinifera/README.txt' 202s '/usr/share/augustus/config/species/Vitis_vinifera/Vitis_vinifera_exon_probs.pbl' -> './config/species/Vitis_vinifera/Vitis_vinifera_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Vitis_vinifera/Vitis_vinifera_igenic_probs.pbl' -> './config/species/Vitis_vinifera/Vitis_vinifera_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Vitis_vinifera/Vitis_vinifera_intron_probs.pbl' -> './config/species/Vitis_vinifera/Vitis_vinifera_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Vitis_vinifera/Vitis_vinifera_metapars.cfg' -> './config/species/Vitis_vinifera/Vitis_vinifera_metapars.cfg' 202s '/usr/share/augustus/config/species/Vitis_vinifera/Vitis_vinifera_metapars.cgp.cfg' -> './config/species/Vitis_vinifera/Vitis_vinifera_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Vitis_vinifera/Vitis_vinifera_metapars.utr.cfg' -> './config/species/Vitis_vinifera/Vitis_vinifera_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Vitis_vinifera/Vitis_vinifera_parameters.cfg' -> './config/species/Vitis_vinifera/Vitis_vinifera_parameters.cfg' 202s '/usr/share/augustus/config/species/Vitis_vinifera/Vitis_vinifera_weightmatrix.txt' -> './config/species/Vitis_vinifera/Vitis_vinifera_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Vitrella_brassicaformis' -> './config/species/Vitrella_brassicaformis' 202s '/usr/share/augustus/config/species/Vitrella_brassicaformis/README.txt' -> './config/species/Vitrella_brassicaformis/README.txt' 202s '/usr/share/augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_exon_probs.pbl' -> './config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_igenic_probs.pbl' -> './config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_intron_probs.pbl' -> './config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.cfg' -> './config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.cfg' 202s '/usr/share/augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.cgp.cfg' -> './config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.utr.cfg' -> './config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_parameters.cfg' -> './config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_parameters.cfg' 202s '/usr/share/augustus/config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_weightmatrix.txt' -> './config/species/Vitrella_brassicaformis/Vitrella_brassicaformis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Xenopus_tropicalis' -> './config/species/Xenopus_tropicalis' 202s '/usr/share/augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_exon_probs.pbl' -> './config/species/Xenopus_tropicalis/Xenopus_tropicalis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_igenic_probs.pbl' -> './config/species/Xenopus_tropicalis/Xenopus_tropicalis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_intron_probs.pbl' -> './config/species/Xenopus_tropicalis/Xenopus_tropicalis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.cfg' -> './config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.cfg' 202s '/usr/share/augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.cgp.cfg' -> './config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.utr.cfg' -> './config/species/Xenopus_tropicalis/Xenopus_tropicalis_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_parameters.cfg' -> './config/species/Xenopus_tropicalis/Xenopus_tropicalis_parameters.cfg' 202s '/usr/share/augustus/config/species/Xenopus_tropicalis/Xenopus_tropicalis_weightmatrix.txt' -> './config/species/Xenopus_tropicalis/Xenopus_tropicalis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Xiphophorus_maculatus' -> './config/species/Xiphophorus_maculatus' 202s '/usr/share/augustus/config/species/Xiphophorus_maculatus/README.txt' -> './config/species/Xiphophorus_maculatus/README.txt' 202s '/usr/share/augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_exon_probs.pbl' -> './config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_igenic_probs.pbl' -> './config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_intron_probs.pbl' -> './config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_parameters.cfg' -> './config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_parameters.cfg' 202s '/usr/share/augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_utr_probs.pbl' -> './config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_utr_probs.pbl' 202s '/usr/share/augustus/config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_weightmatrix.txt' -> './config/species/Xiphophorus_maculatus/Xiphophorus_maculatus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/Xipophorus_maculatus' -> './config/species/Xipophorus_maculatus' 202s '/usr/share/augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_exon_probs.pbl' -> './config/species/Xipophorus_maculatus/Xipophorus_maculatus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_igenic_probs.pbl' -> './config/species/Xipophorus_maculatus/Xipophorus_maculatus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_intron_probs.pbl' -> './config/species/Xipophorus_maculatus/Xipophorus_maculatus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_parameters.cfg' -> './config/species/Xipophorus_maculatus/Xipophorus_maculatus_parameters.cfg' 202s '/usr/share/augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_utr_probs.pbl' -> './config/species/Xipophorus_maculatus/Xipophorus_maculatus_utr_probs.pbl' 202s '/usr/share/augustus/config/species/Xipophorus_maculatus/Xipophorus_maculatus_weightmatrix.txt' -> './config/species/Xipophorus_maculatus/Xipophorus_maculatus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/adorsata' -> './config/species/adorsata' 202s '/usr/share/augustus/config/species/adorsata/adorsata_parameters.cfg' -> './config/species/adorsata/adorsata_parameters.cfg' 202s '/usr/share/augustus/config/species/adorsata/adorsata_weightmatrix.txt' -> './config/species/adorsata/adorsata_weightmatrix.txt' 202s '/usr/share/augustus/config/species/adorsata/generic_exon_probs.pbl' -> './config/species/adorsata/generic_exon_probs.pbl' 202s '/usr/share/augustus/config/species/adorsata/generic_igenic_probs.pbl' -> './config/species/adorsata/generic_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/adorsata/generic_intron_probs.pbl' -> './config/species/adorsata/generic_intron_probs.pbl' 202s '/usr/share/augustus/config/species/adorsata/generic_weightmatrix.txt' -> './config/species/adorsata/generic_weightmatrix.txt' 202s '/usr/share/augustus/config/species/aedes' -> './config/species/aedes' 202s '/usr/share/augustus/config/species/aedes/aedes_exon_probs.pbl' -> './config/species/aedes/aedes_exon_probs.pbl' 202s '/usr/share/augustus/config/species/aedes/aedes_igenic_probs.pbl' -> './config/species/aedes/aedes_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/aedes/aedes_intron_probs.pbl' -> './config/species/aedes/aedes_intron_probs.pbl' 202s '/usr/share/augustus/config/species/aedes/aedes_parameters.cfg' -> './config/species/aedes/aedes_parameters.cfg' 202s '/usr/share/augustus/config/species/aedes/aedes_weightmatrix.txt' -> './config/species/aedes/aedes_weightmatrix.txt' 202s '/usr/share/augustus/config/species/amphimedon' -> './config/species/amphimedon' 202s '/usr/share/augustus/config/species/amphimedon/amphimedon_exon_probs.pbl' -> './config/species/amphimedon/amphimedon_exon_probs.pbl' 202s '/usr/share/augustus/config/species/amphimedon/amphimedon_igenic_probs.pbl' -> './config/species/amphimedon/amphimedon_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/amphimedon/amphimedon_intron_probs.pbl' -> './config/species/amphimedon/amphimedon_intron_probs.pbl' 202s '/usr/share/augustus/config/species/amphimedon/amphimedon_metapars.cfg' -> './config/species/amphimedon/amphimedon_metapars.cfg' 202s '/usr/share/augustus/config/species/amphimedon/amphimedon_parameters.cfg' -> './config/species/amphimedon/amphimedon_parameters.cfg' 202s '/usr/share/augustus/config/species/amphimedon/amphimedon_utr_probs.pbl' -> './config/species/amphimedon/amphimedon_utr_probs.pbl' 202s '/usr/share/augustus/config/species/amphimedon/amphimedon_weightmatrix.txt' -> './config/species/amphimedon/amphimedon_weightmatrix.txt' 202s '/usr/share/augustus/config/species/ancylostoma_ceylanicum' -> './config/species/ancylostoma_ceylanicum' 202s '/usr/share/augustus/config/species/ancylostoma_ceylanicum/README.TXT' -> './config/species/ancylostoma_ceylanicum/README.TXT' 202s '/usr/share/augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_exon_probs.pbl' -> './config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_igenic_probs.pbl' -> './config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_intron_probs.pbl' -> './config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.cfg' -> './config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.cfg' 202s '/usr/share/augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.utr.cfg' -> './config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_parameters.cfg' -> './config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_parameters.cfg' 202s '/usr/share/augustus/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_weightmatrix.txt' -> './config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/anidulans' -> './config/species/anidulans' 202s '/usr/share/augustus/config/species/anidulans/anidulans_exon_probs.pbl' -> './config/species/anidulans/anidulans_exon_probs.pbl' 202s '/usr/share/augustus/config/species/anidulans/anidulans_igenic_probs.pbl' -> './config/species/anidulans/anidulans_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/anidulans/anidulans_intron_probs.pbl' -> './config/species/anidulans/anidulans_intron_probs.pbl' 202s '/usr/share/augustus/config/species/anidulans/anidulans_parameters.cfg' -> './config/species/anidulans/anidulans_parameters.cfg' 202s '/usr/share/augustus/config/species/anidulans/anidulans_weightmatrix.txt' -> './config/species/anidulans/anidulans_weightmatrix.txt' 202s '/usr/share/augustus/config/species/arabidopsis' -> './config/species/arabidopsis' 202s '/usr/share/augustus/config/species/arabidopsis/arabidopsis_exon_probs.pbl' -> './config/species/arabidopsis/arabidopsis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/arabidopsis/arabidopsis_igenic_probs.pbl' -> './config/species/arabidopsis/arabidopsis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/arabidopsis/arabidopsis_intron_probs.pbl' -> './config/species/arabidopsis/arabidopsis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/arabidopsis/arabidopsis_parameters.cfg' -> './config/species/arabidopsis/arabidopsis_parameters.cfg' 202s '/usr/share/augustus/config/species/arabidopsis/arabidopsis_utr_probs.pbl' -> './config/species/arabidopsis/arabidopsis_utr_probs.pbl' 202s '/usr/share/augustus/config/species/arabidopsis/arabidopsis_weightmatrix.txt' -> './config/species/arabidopsis/arabidopsis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/aspergillus_fumigatus' -> './config/species/aspergillus_fumigatus' 202s '/usr/share/augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_exon_probs.pbl' -> './config/species/aspergillus_fumigatus/aspergillus_fumigatus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_igenic_probs.pbl' -> './config/species/aspergillus_fumigatus/aspergillus_fumigatus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_intron_probs.pbl' -> './config/species/aspergillus_fumigatus/aspergillus_fumigatus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_metapars.cfg' -> './config/species/aspergillus_fumigatus/aspergillus_fumigatus_metapars.cfg' 202s '/usr/share/augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_parameters.cfg' -> './config/species/aspergillus_fumigatus/aspergillus_fumigatus_parameters.cfg' 202s '/usr/share/augustus/config/species/aspergillus_fumigatus/aspergillus_fumigatus_weightmatrix.txt' -> './config/species/aspergillus_fumigatus/aspergillus_fumigatus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/aspergillus_nidulans' -> './config/species/aspergillus_nidulans' 202s '/usr/share/augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_exon_probs.pbl' -> './config/species/aspergillus_nidulans/aspergillus_nidulans_exon_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_igenic_probs.pbl' -> './config/species/aspergillus_nidulans/aspergillus_nidulans_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_intron_probs.pbl' -> './config/species/aspergillus_nidulans/aspergillus_nidulans_intron_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_metapars.cfg' -> './config/species/aspergillus_nidulans/aspergillus_nidulans_metapars.cfg' 202s '/usr/share/augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_parameters.cfg' -> './config/species/aspergillus_nidulans/aspergillus_nidulans_parameters.cfg' 202s '/usr/share/augustus/config/species/aspergillus_nidulans/aspergillus_nidulans_weightmatrix.txt' -> './config/species/aspergillus_nidulans/aspergillus_nidulans_weightmatrix.txt' 202s '/usr/share/augustus/config/species/aspergillus_oryzae' -> './config/species/aspergillus_oryzae' 202s '/usr/share/augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_exon_probs.pbl' -> './config/species/aspergillus_oryzae/aspergillus_oryzae_exon_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_igenic_probs.pbl' -> './config/species/aspergillus_oryzae/aspergillus_oryzae_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_intron_probs.pbl' -> './config/species/aspergillus_oryzae/aspergillus_oryzae_intron_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_metapars.cfg' -> './config/species/aspergillus_oryzae/aspergillus_oryzae_metapars.cfg' 202s '/usr/share/augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_parameters.cfg' -> './config/species/aspergillus_oryzae/aspergillus_oryzae_parameters.cfg' 202s '/usr/share/augustus/config/species/aspergillus_oryzae/aspergillus_oryzae_weightmatrix.txt' -> './config/species/aspergillus_oryzae/aspergillus_oryzae_weightmatrix.txt' 202s '/usr/share/augustus/config/species/aspergillus_terreus' -> './config/species/aspergillus_terreus' 202s '/usr/share/augustus/config/species/aspergillus_terreus/aspergillus_terreus_exon_probs.pbl' -> './config/species/aspergillus_terreus/aspergillus_terreus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_terreus/aspergillus_terreus_igenic_probs.pbl' -> './config/species/aspergillus_terreus/aspergillus_terreus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_terreus/aspergillus_terreus_intron_probs.pbl' -> './config/species/aspergillus_terreus/aspergillus_terreus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/aspergillus_terreus/aspergillus_terreus_metapars.cfg' -> './config/species/aspergillus_terreus/aspergillus_terreus_metapars.cfg' 202s '/usr/share/augustus/config/species/aspergillus_terreus/aspergillus_terreus_parameters.cfg' -> './config/species/aspergillus_terreus/aspergillus_terreus_parameters.cfg' 202s '/usr/share/augustus/config/species/aspergillus_terreus/aspergillus_terreus_weightmatrix.txt' -> './config/species/aspergillus_terreus/aspergillus_terreus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/b_pseudomallei' -> './config/species/b_pseudomallei' 202s '/usr/share/augustus/config/species/b_pseudomallei/b_pseudomallei_exon_probs.pbl' -> './config/species/b_pseudomallei/b_pseudomallei_exon_probs.pbl' 202s '/usr/share/augustus/config/species/b_pseudomallei/b_pseudomallei_igenic_probs.pbl' -> './config/species/b_pseudomallei/b_pseudomallei_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/b_pseudomallei/b_pseudomallei_metapars.cfg' -> './config/species/b_pseudomallei/b_pseudomallei_metapars.cfg' 202s '/usr/share/augustus/config/species/b_pseudomallei/b_pseudomallei_metapars.utr.cfg' -> './config/species/b_pseudomallei/b_pseudomallei_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/b_pseudomallei/b_pseudomallei_ovlp_len.pbl' -> './config/species/b_pseudomallei/b_pseudomallei_ovlp_len.pbl' 202s '/usr/share/augustus/config/species/b_pseudomallei/b_pseudomallei_parameters.cfg' -> './config/species/b_pseudomallei/b_pseudomallei_parameters.cfg' 202s '/usr/share/augustus/config/species/b_pseudomallei/b_pseudomallei_parameters.cfg.orig1' -> './config/species/b_pseudomallei/b_pseudomallei_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/b_pseudomallei/b_pseudomallei_parameters.cfg.orig2' -> './config/species/b_pseudomallei/b_pseudomallei_parameters.cfg.orig2' 202s '/usr/share/augustus/config/species/b_pseudomallei/b_pseudomallei_trans_shadow_bacterium.pbl' -> './config/species/b_pseudomallei/b_pseudomallei_trans_shadow_bacterium.pbl' 202s '/usr/share/augustus/config/species/b_pseudomallei/b_pseudomallei_weightmatrix.txt' -> './config/species/b_pseudomallei/b_pseudomallei_weightmatrix.txt' 202s '/usr/share/augustus/config/species/bombus_impatiens1' -> './config/species/bombus_impatiens1' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_exon_probs.pbl' -> './config/species/bombus_impatiens1/bombus_impatiens1_exon_probs.pbl' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_exon_probs.pbl.withoutCRF' -> './config/species/bombus_impatiens1/bombus_impatiens1_exon_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl' -> './config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl.withoutCRF' -> './config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_intron_probs.pbl' -> './config/species/bombus_impatiens1/bombus_impatiens1_intron_probs.pbl' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_intron_probs.pbl.withoutCRF' -> './config/species/bombus_impatiens1/bombus_impatiens1_intron_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_metapars.cfg' -> './config/species/bombus_impatiens1/bombus_impatiens1_metapars.cfg' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_metapars.utr.cfg' -> './config/species/bombus_impatiens1/bombus_impatiens1_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg' -> './config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig1' -> './config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig2' -> './config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig2' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig3' -> './config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig3' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig4' -> './config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig4' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig5' -> './config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg.orig5' 202s '/usr/share/augustus/config/species/bombus_impatiens1/bombus_impatiens1_weightmatrix.txt' -> './config/species/bombus_impatiens1/bombus_impatiens1_weightmatrix.txt' 202s '/usr/share/augustus/config/species/bombus_terrestris2' -> './config/species/bombus_terrestris2' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_exon_probs.pbl' -> './config/species/bombus_terrestris2/bombus_terrestris2_exon_probs.pbl' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_exon_probs.pbl.withoutCRF' -> './config/species/bombus_terrestris2/bombus_terrestris2_exon_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl' -> './config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl.withoutCRF' -> './config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_intron_probs.pbl' -> './config/species/bombus_terrestris2/bombus_terrestris2_intron_probs.pbl' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_intron_probs.pbl.withoutCRF' -> './config/species/bombus_terrestris2/bombus_terrestris2_intron_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_metapars.cfg' -> './config/species/bombus_terrestris2/bombus_terrestris2_metapars.cfg' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_metapars.utr.cfg' -> './config/species/bombus_terrestris2/bombus_terrestris2_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg' -> './config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig1' -> './config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig2' -> './config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig2' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig3' -> './config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig3' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig4' -> './config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg.orig4' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_utr_probs.pbl' -> './config/species/bombus_terrestris2/bombus_terrestris2_utr_probs.pbl' 202s '/usr/share/augustus/config/species/bombus_terrestris2/bombus_terrestris2_weightmatrix.txt' -> './config/species/bombus_terrestris2/bombus_terrestris2_weightmatrix.txt' 202s '/usr/share/augustus/config/species/botrytis_cinerea' -> './config/species/botrytis_cinerea' 202s '/usr/share/augustus/config/species/botrytis_cinerea/botrytis_cinerea_exon_probs.pbl' -> './config/species/botrytis_cinerea/botrytis_cinerea_exon_probs.pbl' 202s '/usr/share/augustus/config/species/botrytis_cinerea/botrytis_cinerea_igenic_probs.pbl' -> './config/species/botrytis_cinerea/botrytis_cinerea_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/botrytis_cinerea/botrytis_cinerea_intron_probs.pbl' -> './config/species/botrytis_cinerea/botrytis_cinerea_intron_probs.pbl' 202s '/usr/share/augustus/config/species/botrytis_cinerea/botrytis_cinerea_metapars.cfg' -> './config/species/botrytis_cinerea/botrytis_cinerea_metapars.cfg' 202s '/usr/share/augustus/config/species/botrytis_cinerea/botrytis_cinerea_parameters.cfg' -> './config/species/botrytis_cinerea/botrytis_cinerea_parameters.cfg' 202s '/usr/share/augustus/config/species/botrytis_cinerea/botrytis_cinerea_weightmatrix.txt' -> './config/species/botrytis_cinerea/botrytis_cinerea_weightmatrix.txt' 202s '/usr/share/augustus/config/species/brugia' -> './config/species/brugia' 202s '/usr/share/augustus/config/species/brugia/brugia_exon_probs.pbl' -> './config/species/brugia/brugia_exon_probs.pbl' 202s '/usr/share/augustus/config/species/brugia/brugia_igenic_probs.pbl' -> './config/species/brugia/brugia_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/brugia/brugia_intron_probs.pbl' -> './config/species/brugia/brugia_intron_probs.pbl' 202s '/usr/share/augustus/config/species/brugia/brugia_parameters.cfg' -> './config/species/brugia/brugia_parameters.cfg' 202s '/usr/share/augustus/config/species/brugia/brugia_splicefile' -> './config/species/brugia/brugia_splicefile' 202s '/usr/share/augustus/config/species/brugia/brugia_weightmatrix.txt' -> './config/species/brugia/brugia_weightmatrix.txt' 202s '/usr/share/augustus/config/species/c_elegans_trsk' -> './config/species/c_elegans_trsk' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl' -> './config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl.withoutCRF' -> './config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl' -> './config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl.withoutCRF' -> './config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl' -> './config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl.withoutCRF' -> './config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_metapars.cfg' -> './config/species/c_elegans_trsk/c_elegans_trsk_metapars.cfg' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_metapars.utr.cfg' -> './config/species/c_elegans_trsk/c_elegans_trsk_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_parameters.cfg' -> './config/species/c_elegans_trsk/c_elegans_trsk_parameters.cfg' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_utr_probs.pbl' -> './config/species/c_elegans_trsk/c_elegans_trsk_utr_probs.pbl' 202s '/usr/share/augustus/config/species/c_elegans_trsk/c_elegans_trsk_weightmatrix.txt' -> './config/species/c_elegans_trsk/c_elegans_trsk_weightmatrix.txt' 202s '/usr/share/augustus/config/species/cacao' -> './config/species/cacao' 202s '/usr/share/augustus/config/species/cacao/cacao_exon_probs.pbl' -> './config/species/cacao/cacao_exon_probs.pbl' 202s '/usr/share/augustus/config/species/cacao/cacao_igenic_probs.pbl' -> './config/species/cacao/cacao_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/cacao/cacao_intron_probs.pbl' -> './config/species/cacao/cacao_intron_probs.pbl' 202s '/usr/share/augustus/config/species/cacao/cacao_metapars.cfg' -> './config/species/cacao/cacao_metapars.cfg' 202s '/usr/share/augustus/config/species/cacao/cacao_metapars.utr.cfg' -> './config/species/cacao/cacao_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/cacao/cacao_parameters.cfg' -> './config/species/cacao/cacao_parameters.cfg' 202s '/usr/share/augustus/config/species/cacao/cacao_utr_probs.pbl' -> './config/species/cacao/cacao_utr_probs.pbl' 202s '/usr/share/augustus/config/species/cacao/cacao_weightmatrix.txt' -> './config/species/cacao/cacao_weightmatrix.txt' 202s '/usr/share/augustus/config/species/caenorhabditis' -> './config/species/caenorhabditis' 202s '/usr/share/augustus/config/species/caenorhabditis/caenorhabditis_exon_probs.pbl' -> './config/species/caenorhabditis/caenorhabditis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/caenorhabditis/caenorhabditis_igenic_probs.pbl' -> './config/species/caenorhabditis/caenorhabditis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/caenorhabditis/caenorhabditis_intron_probs.pbl' -> './config/species/caenorhabditis/caenorhabditis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/caenorhabditis/caenorhabditis_metapars.cfg' -> './config/species/caenorhabditis/caenorhabditis_metapars.cfg' 202s '/usr/share/augustus/config/species/caenorhabditis/caenorhabditis_parameters.cfg' -> './config/species/caenorhabditis/caenorhabditis_parameters.cfg' 202s '/usr/share/augustus/config/species/caenorhabditis/caenorhabditis_trans_shadow_partial_utr.pbl' -> './config/species/caenorhabditis/caenorhabditis_trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/species/caenorhabditis/caenorhabditis_utr_probs.pbl' -> './config/species/caenorhabditis/caenorhabditis_utr_probs.pbl' 202s '/usr/share/augustus/config/species/caenorhabditis/caenorhabditis_weightmatrix.txt' -> './config/species/caenorhabditis/caenorhabditis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/camponotus_floridanus' -> './config/species/camponotus_floridanus' 202s '/usr/share/augustus/config/species/camponotus_floridanus/README.TXT' -> './config/species/camponotus_floridanus/README.TXT' 202s '/usr/share/augustus/config/species/camponotus_floridanus/camponotus_floridanus_exon_probs.pbl' -> './config/species/camponotus_floridanus/camponotus_floridanus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/camponotus_floridanus/camponotus_floridanus_igenic_probs.pbl' -> './config/species/camponotus_floridanus/camponotus_floridanus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/camponotus_floridanus/camponotus_floridanus_intron_probs.pbl' -> './config/species/camponotus_floridanus/camponotus_floridanus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/camponotus_floridanus/camponotus_floridanus_metapars.cfg' -> './config/species/camponotus_floridanus/camponotus_floridanus_metapars.cfg' 202s '/usr/share/augustus/config/species/camponotus_floridanus/camponotus_floridanus_metapars.utr.cfg' -> './config/species/camponotus_floridanus/camponotus_floridanus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/camponotus_floridanus/camponotus_floridanus_parameters.cfg' -> './config/species/camponotus_floridanus/camponotus_floridanus_parameters.cfg' 202s '/usr/share/augustus/config/species/camponotus_floridanus/camponotus_floridanus_weightmatrix.txt' -> './config/species/camponotus_floridanus/camponotus_floridanus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/candida_albicans' -> './config/species/candida_albicans' 202s '/usr/share/augustus/config/species/candida_albicans/candida_albicans_exon_probs.pbl' -> './config/species/candida_albicans/candida_albicans_exon_probs.pbl' 202s '/usr/share/augustus/config/species/candida_albicans/candida_albicans_igenic_probs.pbl' -> './config/species/candida_albicans/candida_albicans_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/candida_albicans/candida_albicans_intron_probs.pbl' -> './config/species/candida_albicans/candida_albicans_intron_probs.pbl' 202s '/usr/share/augustus/config/species/candida_albicans/candida_albicans_metapars.cfg' -> './config/species/candida_albicans/candida_albicans_metapars.cfg' 202s '/usr/share/augustus/config/species/candida_albicans/candida_albicans_parameters.cfg' -> './config/species/candida_albicans/candida_albicans_parameters.cfg' 202s '/usr/share/augustus/config/species/candida_albicans/candida_albicans_weightmatrix.txt' -> './config/species/candida_albicans/candida_albicans_weightmatrix.txt' 202s '/usr/share/augustus/config/species/candida_guilliermondii' -> './config/species/candida_guilliermondii' 202s '/usr/share/augustus/config/species/candida_guilliermondii/candida_guilliermondii_exon_probs.pbl' -> './config/species/candida_guilliermondii/candida_guilliermondii_exon_probs.pbl' 202s '/usr/share/augustus/config/species/candida_guilliermondii/candida_guilliermondii_igenic_probs.pbl' -> './config/species/candida_guilliermondii/candida_guilliermondii_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/candida_guilliermondii/candida_guilliermondii_intron_probs.pbl' -> './config/species/candida_guilliermondii/candida_guilliermondii_intron_probs.pbl' 202s '/usr/share/augustus/config/species/candida_guilliermondii/candida_guilliermondii_metapars.cfg' -> './config/species/candida_guilliermondii/candida_guilliermondii_metapars.cfg' 202s '/usr/share/augustus/config/species/candida_guilliermondii/candida_guilliermondii_parameters.cfg' -> './config/species/candida_guilliermondii/candida_guilliermondii_parameters.cfg' 202s '/usr/share/augustus/config/species/candida_guilliermondii/candida_guilliermondii_weightmatrix.txt' -> './config/species/candida_guilliermondii/candida_guilliermondii_weightmatrix.txt' 202s '/usr/share/augustus/config/species/candida_tropicalis' -> './config/species/candida_tropicalis' 202s '/usr/share/augustus/config/species/candida_tropicalis/candida_tropicalis_exon_probs.pbl' -> './config/species/candida_tropicalis/candida_tropicalis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/candida_tropicalis/candida_tropicalis_igenic_probs.pbl' -> './config/species/candida_tropicalis/candida_tropicalis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/candida_tropicalis/candida_tropicalis_intron_probs.pbl' -> './config/species/candida_tropicalis/candida_tropicalis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/candida_tropicalis/candida_tropicalis_metapars.cfg' -> './config/species/candida_tropicalis/candida_tropicalis_metapars.cfg' 202s '/usr/share/augustus/config/species/candida_tropicalis/candida_tropicalis_parameters.cfg' -> './config/species/candida_tropicalis/candida_tropicalis_parameters.cfg' 202s '/usr/share/augustus/config/species/candida_tropicalis/candida_tropicalis_weightmatrix.txt' -> './config/species/candida_tropicalis/candida_tropicalis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/chaetomium_globosum' -> './config/species/chaetomium_globosum' 202s '/usr/share/augustus/config/species/chaetomium_globosum/chaetomium_globosum_exon_probs.pbl' -> './config/species/chaetomium_globosum/chaetomium_globosum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/chaetomium_globosum/chaetomium_globosum_igenic_probs.pbl' -> './config/species/chaetomium_globosum/chaetomium_globosum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/chaetomium_globosum/chaetomium_globosum_intron_probs.pbl' -> './config/species/chaetomium_globosum/chaetomium_globosum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/chaetomium_globosum/chaetomium_globosum_metapars.cfg' -> './config/species/chaetomium_globosum/chaetomium_globosum_metapars.cfg' 202s '/usr/share/augustus/config/species/chaetomium_globosum/chaetomium_globosum_parameters.cfg' -> './config/species/chaetomium_globosum/chaetomium_globosum_parameters.cfg' 202s '/usr/share/augustus/config/species/chaetomium_globosum/chaetomium_globosum_weightmatrix.txt' -> './config/species/chaetomium_globosum/chaetomium_globosum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/chicken' -> './config/species/chicken' 202s '/usr/share/augustus/config/species/chicken/README.TXT' -> './config/species/chicken/README.TXT' 202s '/usr/share/augustus/config/species/chicken/chicken_exon_probs.pbl' -> './config/species/chicken/chicken_exon_probs.pbl' 202s '/usr/share/augustus/config/species/chicken/chicken_igenic_probs.pbl' -> './config/species/chicken/chicken_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/chicken/chicken_intron_probs.pbl' -> './config/species/chicken/chicken_intron_probs.pbl' 202s '/usr/share/augustus/config/species/chicken/chicken_metapars.cfg' -> './config/species/chicken/chicken_metapars.cfg' 202s '/usr/share/augustus/config/species/chicken/chicken_metapars.utr.cfg' -> './config/species/chicken/chicken_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/chicken/chicken_parameters.cfg' -> './config/species/chicken/chicken_parameters.cfg' 202s '/usr/share/augustus/config/species/chicken/chicken_weightmatrix.txt' -> './config/species/chicken/chicken_weightmatrix.txt' 202s '/usr/share/augustus/config/species/chiloscyllium' -> './config/species/chiloscyllium' 202s '/usr/share/augustus/config/species/chiloscyllium/chiloscyllium_exon_probs.pbl' -> './config/species/chiloscyllium/chiloscyllium_exon_probs.pbl' 202s '/usr/share/augustus/config/species/chiloscyllium/chiloscyllium_igenic_probs.pbl' -> './config/species/chiloscyllium/chiloscyllium_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/chiloscyllium/chiloscyllium_intron_probs.pbl' -> './config/species/chiloscyllium/chiloscyllium_intron_probs.pbl' 202s '/usr/share/augustus/config/species/chiloscyllium/chiloscyllium_metapars.cfg' -> './config/species/chiloscyllium/chiloscyllium_metapars.cfg' 202s '/usr/share/augustus/config/species/chiloscyllium/chiloscyllium_metapars.cgp.cfg' -> './config/species/chiloscyllium/chiloscyllium_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/chiloscyllium/chiloscyllium_metapars.utr.cfg' -> './config/species/chiloscyllium/chiloscyllium_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/chiloscyllium/chiloscyllium_parameters.cfg' -> './config/species/chiloscyllium/chiloscyllium_parameters.cfg' 202s '/usr/share/augustus/config/species/chiloscyllium/chiloscyllium_parameters.cfg.orig1' -> './config/species/chiloscyllium/chiloscyllium_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/chiloscyllium/chiloscyllium_weightmatrix.txt' -> './config/species/chiloscyllium/chiloscyllium_weightmatrix.txt' 202s '/usr/share/augustus/config/species/chlamy2011' -> './config/species/chlamy2011' 202s '/usr/share/augustus/config/species/chlamy2011/chlamy2011_exon_probs.pbl' -> './config/species/chlamy2011/chlamy2011_exon_probs.pbl' 202s '/usr/share/augustus/config/species/chlamy2011/chlamy2011_igenic_probs.pbl' -> './config/species/chlamy2011/chlamy2011_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/chlamy2011/chlamy2011_intron_probs.pbl' -> './config/species/chlamy2011/chlamy2011_intron_probs.pbl' 202s '/usr/share/augustus/config/species/chlamy2011/chlamy2011_metapars.cfg' -> './config/species/chlamy2011/chlamy2011_metapars.cfg' 202s '/usr/share/augustus/config/species/chlamy2011/chlamy2011_metapars.utr.cfg' -> './config/species/chlamy2011/chlamy2011_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/chlamy2011/chlamy2011_parameters.cfg' -> './config/species/chlamy2011/chlamy2011_parameters.cfg' 202s '/usr/share/augustus/config/species/chlamy2011/chlamy2011_trans_shadow_partial.pbl' -> './config/species/chlamy2011/chlamy2011_trans_shadow_partial.pbl' 202s '/usr/share/augustus/config/species/chlamy2011/chlamy2011_trans_shadow_partial_utr.pbl' -> './config/species/chlamy2011/chlamy2011_trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/species/chlamy2011/chlamy2011_utr_probs.pbl' -> './config/species/chlamy2011/chlamy2011_utr_probs.pbl' 202s '/usr/share/augustus/config/species/chlamy2011/chlamy2011_weightmatrix.txt' -> './config/species/chlamy2011/chlamy2011_weightmatrix.txt' 202s '/usr/share/augustus/config/species/chlamydomonas' -> './config/species/chlamydomonas' 202s '/usr/share/augustus/config/species/chlamydomonas/chlamydomonas_exon_probs.pbl' -> './config/species/chlamydomonas/chlamydomonas_exon_probs.pbl' 202s '/usr/share/augustus/config/species/chlamydomonas/chlamydomonas_igenic_probs.pbl' -> './config/species/chlamydomonas/chlamydomonas_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/chlamydomonas/chlamydomonas_intron_probs.pbl' -> './config/species/chlamydomonas/chlamydomonas_intron_probs.pbl' 202s '/usr/share/augustus/config/species/chlamydomonas/chlamydomonas_metapars.cfg' -> './config/species/chlamydomonas/chlamydomonas_metapars.cfg' 202s '/usr/share/augustus/config/species/chlamydomonas/chlamydomonas_parameters.cfg' -> './config/species/chlamydomonas/chlamydomonas_parameters.cfg' 202s '/usr/share/augustus/config/species/chlamydomonas/chlamydomonas_trans_shadow_partial.pbl' -> './config/species/chlamydomonas/chlamydomonas_trans_shadow_partial.pbl' 202s '/usr/share/augustus/config/species/chlamydomonas/chlamydomonas_trans_shadow_partial_utr.pbl' -> './config/species/chlamydomonas/chlamydomonas_trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/species/chlamydomonas/chlamydomonas_utr_probs.pbl' -> './config/species/chlamydomonas/chlamydomonas_utr_probs.pbl' 202s '/usr/share/augustus/config/species/chlamydomonas/chlamydomonas_weightmatrix.txt' -> './config/species/chlamydomonas/chlamydomonas_weightmatrix.txt' 202s '/usr/share/augustus/config/species/chlorella' -> './config/species/chlorella' 202s '/usr/share/augustus/config/species/chlorella/chlorella_exon_probs.pbl' -> './config/species/chlorella/chlorella_exon_probs.pbl' 202s '/usr/share/augustus/config/species/chlorella/chlorella_igenic_probs.pbl' -> './config/species/chlorella/chlorella_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/chlorella/chlorella_intron_probs.pbl' -> './config/species/chlorella/chlorella_intron_probs.pbl' 202s '/usr/share/augustus/config/species/chlorella/chlorella_metapars.cfg' -> './config/species/chlorella/chlorella_metapars.cfg' 202s '/usr/share/augustus/config/species/chlorella/chlorella_metapars.utr.cfg' -> './config/species/chlorella/chlorella_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/chlorella/chlorella_parameters.cfg' -> './config/species/chlorella/chlorella_parameters.cfg' 202s '/usr/share/augustus/config/species/chlorella/chlorella_utr_probs.pbl' -> './config/species/chlorella/chlorella_utr_probs.pbl' 202s '/usr/share/augustus/config/species/chlorella/chlorella_weightmatrix.txt' -> './config/species/chlorella/chlorella_weightmatrix.txt' 202s '/usr/share/augustus/config/species/ciona' -> './config/species/ciona' 202s '/usr/share/augustus/config/species/ciona/README.TXT' -> './config/species/ciona/README.TXT' 202s '/usr/share/augustus/config/species/ciona/ciona_exon_probs.pbl' -> './config/species/ciona/ciona_exon_probs.pbl' 202s '/usr/share/augustus/config/species/ciona/ciona_igenic_probs.pbl' -> './config/species/ciona/ciona_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/ciona/ciona_intron_probs.pbl' -> './config/species/ciona/ciona_intron_probs.pbl' 202s '/usr/share/augustus/config/species/ciona/ciona_metapars.cfg' -> './config/species/ciona/ciona_metapars.cfg' 202s '/usr/share/augustus/config/species/ciona/ciona_metapars.cgp.cfg' -> './config/species/ciona/ciona_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/ciona/ciona_metapars.utr.cfg' -> './config/species/ciona/ciona_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/ciona/ciona_parameters.cfg' -> './config/species/ciona/ciona_parameters.cfg' 202s '/usr/share/augustus/config/species/ciona/ciona_parameters.cfg.orig1' -> './config/species/ciona/ciona_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/ciona/ciona_weightmatrix.txt' -> './config/species/ciona/ciona_weightmatrix.txt' 202s '/usr/share/augustus/config/species/coccidioides_immitis' -> './config/species/coccidioides_immitis' 202s '/usr/share/augustus/config/species/coccidioides_immitis/coccidioides_immitis_exon_probs.pbl' -> './config/species/coccidioides_immitis/coccidioides_immitis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/coccidioides_immitis/coccidioides_immitis_igenic_probs.pbl' -> './config/species/coccidioides_immitis/coccidioides_immitis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/coccidioides_immitis/coccidioides_immitis_intron_probs.pbl' -> './config/species/coccidioides_immitis/coccidioides_immitis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/coccidioides_immitis/coccidioides_immitis_metapars.cfg' -> './config/species/coccidioides_immitis/coccidioides_immitis_metapars.cfg' 202s '/usr/share/augustus/config/species/coccidioides_immitis/coccidioides_immitis_parameters.cfg' -> './config/species/coccidioides_immitis/coccidioides_immitis_parameters.cfg' 202s '/usr/share/augustus/config/species/coccidioides_immitis/coccidioides_immitis_weightmatrix.txt' -> './config/species/coccidioides_immitis/coccidioides_immitis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/coprinus' -> './config/species/coprinus' 202s '/usr/share/augustus/config/species/coprinus/coprinus_exon_probs.pbl' -> './config/species/coprinus/coprinus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/coprinus/coprinus_igenic_probs.pbl' -> './config/species/coprinus/coprinus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/coprinus/coprinus_intron_probs.pbl' -> './config/species/coprinus/coprinus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/coprinus/coprinus_parameters.cfg' -> './config/species/coprinus/coprinus_parameters.cfg' 202s '/usr/share/augustus/config/species/coprinus/coprinus_weightmatrix.txt' -> './config/species/coprinus/coprinus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/coprinus_cinereus' -> './config/species/coprinus_cinereus' 202s '/usr/share/augustus/config/species/coprinus_cinereus/coprinus_cinereus_exon_probs.pbl' -> './config/species/coprinus_cinereus/coprinus_cinereus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/coprinus_cinereus/coprinus_cinereus_igenic_probs.pbl' -> './config/species/coprinus_cinereus/coprinus_cinereus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/coprinus_cinereus/coprinus_cinereus_intron_probs.pbl' -> './config/species/coprinus_cinereus/coprinus_cinereus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/coprinus_cinereus/coprinus_cinereus_metapars.cfg' -> './config/species/coprinus_cinereus/coprinus_cinereus_metapars.cfg' 202s '/usr/share/augustus/config/species/coprinus_cinereus/coprinus_cinereus_parameters.cfg' -> './config/species/coprinus_cinereus/coprinus_cinereus_parameters.cfg' 202s '/usr/share/augustus/config/species/coprinus_cinereus/coprinus_cinereus_weightmatrix.txt' -> './config/species/coprinus_cinereus/coprinus_cinereus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/coyote_tobacco' -> './config/species/coyote_tobacco' 202s '/usr/share/augustus/config/species/coyote_tobacco/coyote_tobacco_exon_probs.pbl' -> './config/species/coyote_tobacco/coyote_tobacco_exon_probs.pbl' 202s '/usr/share/augustus/config/species/coyote_tobacco/coyote_tobacco_igenic_probs.pbl' -> './config/species/coyote_tobacco/coyote_tobacco_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/coyote_tobacco/coyote_tobacco_intron_probs.pbl' -> './config/species/coyote_tobacco/coyote_tobacco_intron_probs.pbl' 202s '/usr/share/augustus/config/species/coyote_tobacco/coyote_tobacco_metapars.cfg' -> './config/species/coyote_tobacco/coyote_tobacco_metapars.cfg' 202s '/usr/share/augustus/config/species/coyote_tobacco/coyote_tobacco_metapars.utr.cfg' -> './config/species/coyote_tobacco/coyote_tobacco_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/coyote_tobacco/coyote_tobacco_parameters.cfg' -> './config/species/coyote_tobacco/coyote_tobacco_parameters.cfg' 202s '/usr/share/augustus/config/species/coyote_tobacco/coyote_tobacco_trans_shadow_partial_utr.pbl' -> './config/species/coyote_tobacco/coyote_tobacco_trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/species/coyote_tobacco/coyote_tobacco_utr_probs.pbl' -> './config/species/coyote_tobacco/coyote_tobacco_utr_probs.pbl' 202s '/usr/share/augustus/config/species/coyote_tobacco/coyote_tobacco_weightmatrix.txt' -> './config/species/coyote_tobacco/coyote_tobacco_weightmatrix.txt' 202s '/usr/share/augustus/config/species/cryptococcus' -> './config/species/cryptococcus' 202s '/usr/share/augustus/config/species/cryptococcus/cryptococcus_exon_probs.pbl' -> './config/species/cryptococcus/cryptococcus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus/cryptococcus_igenic_probs.pbl' -> './config/species/cryptococcus/cryptococcus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus/cryptococcus_intron_probs.pbl' -> './config/species/cryptococcus/cryptococcus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus/cryptococcus_parameters.cfg' -> './config/species/cryptococcus/cryptococcus_parameters.cfg' 202s '/usr/share/augustus/config/species/cryptococcus/cryptococcus_weightmatrix.txt' -> './config/species/cryptococcus/cryptococcus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_gattii' -> './config/species/cryptococcus_neoformans_gattii' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_exon_probs.pbl' -> './config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_exon_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_igenic_probs.pbl' -> './config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_intron_probs.pbl' -> './config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_intron_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_metapars.cfg' -> './config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_metapars.cfg' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_parameters.cfg' -> './config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_parameters.cfg' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_weightmatrix.txt' -> './config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_weightmatrix.txt' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_B' -> './config/species/cryptococcus_neoformans_neoformans_B' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_exon_probs.pbl' -> './config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_exon_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_igenic_probs.pbl' -> './config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_intron_probs.pbl' -> './config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_intron_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_metapars.cfg' -> './config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_metapars.cfg' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_parameters.cfg' -> './config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_parameters.cfg' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_weightmatrix.txt' -> './config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_weightmatrix.txt' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_JEC21' -> './config/species/cryptococcus_neoformans_neoformans_JEC21' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_exon_probs.pbl' -> './config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_exon_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_igenic_probs.pbl' -> './config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_intron_probs.pbl' -> './config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_intron_probs.pbl' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_metapars.cfg' -> './config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_metapars.cfg' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_parameters.cfg' -> './config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_parameters.cfg' 202s '/usr/share/augustus/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_weightmatrix.txt' -> './config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_weightmatrix.txt' 202s '/usr/share/augustus/config/species/culex' -> './config/species/culex' 202s '/usr/share/augustus/config/species/culex/culex_exon_probs.pbl' -> './config/species/culex/culex_exon_probs.pbl' 202s '/usr/share/augustus/config/species/culex/culex_exon_probs.pbl.wech' -> './config/species/culex/culex_exon_probs.pbl.wech' 202s '/usr/share/augustus/config/species/culex/culex_igenic_probs.pbl' -> './config/species/culex/culex_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/culex/culex_igenic_probs.pbl.wech' -> './config/species/culex/culex_igenic_probs.pbl.wech' 202s '/usr/share/augustus/config/species/culex/culex_intron_probs.pbl' -> './config/species/culex/culex_intron_probs.pbl' 202s '/usr/share/augustus/config/species/culex/culex_intron_probs.pbl.wech' -> './config/species/culex/culex_intron_probs.pbl.wech' 202s '/usr/share/augustus/config/species/culex/culex_metapars.cfg' -> './config/species/culex/culex_metapars.cfg' 202s '/usr/share/augustus/config/species/culex/culex_parameters.cfg' -> './config/species/culex/culex_parameters.cfg' 202s '/usr/share/augustus/config/species/culex/culex_parameters.old.cfg' -> './config/species/culex/culex_parameters.old.cfg' 202s '/usr/share/augustus/config/species/culex/culex_trans_shadow_partial_utr.pbl' -> './config/species/culex/culex_trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/species/culex/culex_utr_probs.pbl' -> './config/species/culex/culex_utr_probs.pbl' 202s '/usr/share/augustus/config/species/culex/culex_weightmatrix.txt' -> './config/species/culex/culex_weightmatrix.txt' 202s '/usr/share/augustus/config/species/debaryomyces_hansenii' -> './config/species/debaryomyces_hansenii' 202s '/usr/share/augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_exon_probs.pbl' -> './config/species/debaryomyces_hansenii/debaryomyces_hansenii_exon_probs.pbl' 202s '/usr/share/augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_igenic_probs.pbl' -> './config/species/debaryomyces_hansenii/debaryomyces_hansenii_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_intron_probs.pbl' -> './config/species/debaryomyces_hansenii/debaryomyces_hansenii_intron_probs.pbl' 202s '/usr/share/augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_metapars.cfg' -> './config/species/debaryomyces_hansenii/debaryomyces_hansenii_metapars.cfg' 202s '/usr/share/augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_parameters.cfg' -> './config/species/debaryomyces_hansenii/debaryomyces_hansenii_parameters.cfg' 202s '/usr/share/augustus/config/species/debaryomyces_hansenii/debaryomyces_hansenii_weightmatrix.txt' -> './config/species/debaryomyces_hansenii/debaryomyces_hansenii_weightmatrix.txt' 202s '/usr/share/augustus/config/species/elephant_shark' -> './config/species/elephant_shark' 202s '/usr/share/augustus/config/species/elephant_shark/elephant_shark_exon_probs.pbl' -> './config/species/elephant_shark/elephant_shark_exon_probs.pbl' 202s '/usr/share/augustus/config/species/elephant_shark/elephant_shark_igenic_probs.pbl' -> './config/species/elephant_shark/elephant_shark_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/elephant_shark/elephant_shark_intron_probs.pbl' -> './config/species/elephant_shark/elephant_shark_intron_probs.pbl' 202s '/usr/share/augustus/config/species/elephant_shark/elephant_shark_metapars.cfg' -> './config/species/elephant_shark/elephant_shark_metapars.cfg' 202s '/usr/share/augustus/config/species/elephant_shark/elephant_shark_metapars.utr.cfg' -> './config/species/elephant_shark/elephant_shark_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/elephant_shark/elephant_shark_parameters.cfg' -> './config/species/elephant_shark/elephant_shark_parameters.cfg' 202s '/usr/share/augustus/config/species/elephant_shark/elephant_shark_weightmatrix.txt' -> './config/species/elephant_shark/elephant_shark_weightmatrix.txt' 202s '/usr/share/augustus/config/species/encephalitozoon_cuniculi_GB' -> './config/species/encephalitozoon_cuniculi_GB' 202s '/usr/share/augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_exon_probs.pbl' -> './config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_exon_probs.pbl' 202s '/usr/share/augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_igenic_probs.pbl' -> './config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_intron_probs.pbl' -> './config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_intron_probs.pbl' 202s '/usr/share/augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_metapars.cfg' -> './config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_metapars.cfg' 202s '/usr/share/augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_parameters.cfg' -> './config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_parameters.cfg' 202s '/usr/share/augustus/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_weightmatrix.txt' -> './config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_weightmatrix.txt' 202s '/usr/share/augustus/config/species/eremothecium_gossypii' -> './config/species/eremothecium_gossypii' 202s '/usr/share/augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_exon_probs.pbl' -> './config/species/eremothecium_gossypii/eremothecium_gossypii_exon_probs.pbl' 202s '/usr/share/augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_igenic_probs.pbl' -> './config/species/eremothecium_gossypii/eremothecium_gossypii_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_intron_probs.pbl' -> './config/species/eremothecium_gossypii/eremothecium_gossypii_intron_probs.pbl' 202s '/usr/share/augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_metapars.cfg' -> './config/species/eremothecium_gossypii/eremothecium_gossypii_metapars.cfg' 202s '/usr/share/augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_parameters.cfg' -> './config/species/eremothecium_gossypii/eremothecium_gossypii_parameters.cfg' 202s '/usr/share/augustus/config/species/eremothecium_gossypii/eremothecium_gossypii_weightmatrix.txt' -> './config/species/eremothecium_gossypii/eremothecium_gossypii_weightmatrix.txt' 202s '/usr/share/augustus/config/species/fly' -> './config/species/fly' 202s '/usr/share/augustus/config/species/fly/fly_exon_probs.pbl' -> './config/species/fly/fly_exon_probs.pbl' 202s '/usr/share/augustus/config/species/fly/fly_igenic_probs.pbl' -> './config/species/fly/fly_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/fly/fly_intron_probs.pbl' -> './config/species/fly/fly_intron_probs.pbl' 202s '/usr/share/augustus/config/species/fly/fly_metapars.cfg' -> './config/species/fly/fly_metapars.cfg' 202s '/usr/share/augustus/config/species/fly/fly_metapars.utr.cfg' -> './config/species/fly/fly_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/fly/fly_parameters.cfg' -> './config/species/fly/fly_parameters.cfg' 202s '/usr/share/augustus/config/species/fly/fly_utr_probs.pbl' -> './config/species/fly/fly_utr_probs.pbl' 202s '/usr/share/augustus/config/species/fly/fly_weightmatrix.txt' -> './config/species/fly/fly_weightmatrix.txt' 202s '/usr/share/augustus/config/species/fly_exp' -> './config/species/fly_exp' 202s '/usr/share/augustus/config/species/fly_exp/fly_exp_exon_probs.pbl' -> './config/species/fly_exp/fly_exp_exon_probs.pbl' 202s '/usr/share/augustus/config/species/fly_exp/fly_exp_igenic_probs.pbl' -> './config/species/fly_exp/fly_exp_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/fly_exp/fly_exp_intron_probs.pbl' -> './config/species/fly_exp/fly_exp_intron_probs.pbl' 202s '/usr/share/augustus/config/species/fly_exp/fly_exp_metapars.cfg' -> './config/species/fly_exp/fly_exp_metapars.cfg' 202s '/usr/share/augustus/config/species/fly_exp/fly_exp_metapars.utr.cfg' -> './config/species/fly_exp/fly_exp_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/fly_exp/fly_exp_parameters.cfg' -> './config/species/fly_exp/fly_exp_parameters.cfg' 202s '/usr/share/augustus/config/species/fly_exp/fly_exp_utr_probs.pbl' -> './config/species/fly_exp/fly_exp_utr_probs.pbl' 202s '/usr/share/augustus/config/species/fly_exp/fly_exp_weightmatrix.txt' -> './config/species/fly_exp/fly_exp_weightmatrix.txt' 202s '/usr/share/augustus/config/species/fusarium' -> './config/species/fusarium' 202s '/usr/share/augustus/config/species/fusarium/fusarium_exon_probs.pbl' -> './config/species/fusarium/fusarium_exon_probs.pbl' 202s '/usr/share/augustus/config/species/fusarium/fusarium_igenic_probs.pbl' -> './config/species/fusarium/fusarium_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/fusarium/fusarium_intron_probs.pbl' -> './config/species/fusarium/fusarium_intron_probs.pbl' 202s '/usr/share/augustus/config/species/fusarium/fusarium_parameters.cfg' -> './config/species/fusarium/fusarium_parameters.cfg' 202s '/usr/share/augustus/config/species/fusarium/fusarium_weightmatrix.txt' -> './config/species/fusarium/fusarium_weightmatrix.txt' 202s '/usr/share/augustus/config/species/fusarium_graminearum' -> './config/species/fusarium_graminearum' 202s '/usr/share/augustus/config/species/fusarium_graminearum/fusarium_graminearum_exon_probs.pbl' -> './config/species/fusarium_graminearum/fusarium_graminearum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/fusarium_graminearum/fusarium_graminearum_igenic_probs.pbl' -> './config/species/fusarium_graminearum/fusarium_graminearum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/fusarium_graminearum/fusarium_graminearum_intron_probs.pbl' -> './config/species/fusarium_graminearum/fusarium_graminearum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/fusarium_graminearum/fusarium_graminearum_metapars.cfg' -> './config/species/fusarium_graminearum/fusarium_graminearum_metapars.cfg' 202s '/usr/share/augustus/config/species/fusarium_graminearum/fusarium_graminearum_parameters.cfg' -> './config/species/fusarium_graminearum/fusarium_graminearum_parameters.cfg' 202s '/usr/share/augustus/config/species/fusarium_graminearum/fusarium_graminearum_weightmatrix.txt' -> './config/species/fusarium_graminearum/fusarium_graminearum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/galdieria' -> './config/species/galdieria' 202s '/usr/share/augustus/config/species/galdieria/extrinsic.PE.cfg' -> './config/species/galdieria/extrinsic.PE.cfg' 202s '/usr/share/augustus/config/species/galdieria/galdieria_exon_probs.pbl' -> './config/species/galdieria/galdieria_exon_probs.pbl' 202s '/usr/share/augustus/config/species/galdieria/galdieria_igenic_probs.pbl' -> './config/species/galdieria/galdieria_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/galdieria/galdieria_intron_probs.pbl' -> './config/species/galdieria/galdieria_intron_probs.pbl' 202s '/usr/share/augustus/config/species/galdieria/galdieria_metapars.cfg' -> './config/species/galdieria/galdieria_metapars.cfg' 202s '/usr/share/augustus/config/species/galdieria/galdieria_parameters.cfg' -> './config/species/galdieria/galdieria_parameters.cfg' 202s '/usr/share/augustus/config/species/galdieria/galdieria_splicefile' -> './config/species/galdieria/galdieria_splicefile' 202s '/usr/share/augustus/config/species/galdieria/galdieria_trans_shadow_partial_utr.pbl' -> './config/species/galdieria/galdieria_trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/species/galdieria/galdieria_utr_probs.pbl' -> './config/species/galdieria/galdieria_utr_probs.pbl' 202s '/usr/share/augustus/config/species/galdieria/galdieria_weightmatrix.txt' -> './config/species/galdieria/galdieria_weightmatrix.txt' 202s '/usr/share/augustus/config/species/generic' -> './config/species/generic' 202s '/usr/share/augustus/config/species/generic/generic_metapars.cfg' -> './config/species/generic/generic_metapars.cfg' 202s '/usr/share/augustus/config/species/generic/generic_metapars.cgp.cfg' -> './config/species/generic/generic_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/generic/generic_metapars.utr.cfg' -> './config/species/generic/generic_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/generic/generic_parameters.cfg' -> './config/species/generic/generic_parameters.cfg' 202s '/usr/share/augustus/config/species/generic/generic_weightmatrix.txt' -> './config/species/generic/generic_weightmatrix.txt' 202s '/usr/share/augustus/config/species/gigaspora_margarita' -> './config/species/gigaspora_margarita' 202s '/usr/share/augustus/config/species/gigaspora_margarita/README.TXT' -> './config/species/gigaspora_margarita/README.TXT' 202s '/usr/share/augustus/config/species/gigaspora_margarita/gigaspora_margarita_exon_probs.pbl' -> './config/species/gigaspora_margarita/gigaspora_margarita_exon_probs.pbl' 202s '/usr/share/augustus/config/species/gigaspora_margarita/gigaspora_margarita_igenic_probs.pbl' -> './config/species/gigaspora_margarita/gigaspora_margarita_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/gigaspora_margarita/gigaspora_margarita_intron_probs.pbl' -> './config/species/gigaspora_margarita/gigaspora_margarita_intron_probs.pbl' 202s '/usr/share/augustus/config/species/gigaspora_margarita/gigaspora_margarita_metapars.cfg' -> './config/species/gigaspora_margarita/gigaspora_margarita_metapars.cfg' 202s '/usr/share/augustus/config/species/gigaspora_margarita/gigaspora_margarita_metapars.cgp.cfg' -> './config/species/gigaspora_margarita/gigaspora_margarita_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/gigaspora_margarita/gigaspora_margarita_metapars.utr.cfg' -> './config/species/gigaspora_margarita/gigaspora_margarita_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/gigaspora_margarita/gigaspora_margarita_parameters.cfg' -> './config/species/gigaspora_margarita/gigaspora_margarita_parameters.cfg' 202s '/usr/share/augustus/config/species/gigaspora_margarita/gigaspora_margarita_weightmatrix.txt' -> './config/species/gigaspora_margarita/gigaspora_margarita_weightmatrix.txt' 202s '/usr/share/augustus/config/species/gigaspora_margarita/gth.cfg' -> './config/species/gigaspora_margarita/gth.cfg' 202s '/usr/share/augustus/config/species/heliconius_melpomene1' -> './config/species/heliconius_melpomene1' 202s '/usr/share/augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_exon_probs.pbl' -> './config/species/heliconius_melpomene1/heliconius_melpomene1_exon_probs.pbl' 202s '/usr/share/augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_igenic_probs.pbl' -> './config/species/heliconius_melpomene1/heliconius_melpomene1_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_intron_probs.pbl' -> './config/species/heliconius_melpomene1/heliconius_melpomene1_intron_probs.pbl' 202s '/usr/share/augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_metapars.cfg' -> './config/species/heliconius_melpomene1/heliconius_melpomene1_metapars.cfg' 202s '/usr/share/augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_metapars.utr.cfg' -> './config/species/heliconius_melpomene1/heliconius_melpomene1_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_parameters.cfg' -> './config/species/heliconius_melpomene1/heliconius_melpomene1_parameters.cfg' 202s '/usr/share/augustus/config/species/heliconius_melpomene1/heliconius_melpomene1_weightmatrix.txt' -> './config/species/heliconius_melpomene1/heliconius_melpomene1_weightmatrix.txt' 202s '/usr/share/augustus/config/species/histoplasma' -> './config/species/histoplasma' 202s '/usr/share/augustus/config/species/histoplasma/histoplasma_exon_probs.pbl' -> './config/species/histoplasma/histoplasma_exon_probs.pbl' 202s '/usr/share/augustus/config/species/histoplasma/histoplasma_igenic_probs.pbl' -> './config/species/histoplasma/histoplasma_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/histoplasma/histoplasma_intron_probs.pbl' -> './config/species/histoplasma/histoplasma_intron_probs.pbl' 202s '/usr/share/augustus/config/species/histoplasma/histoplasma_parameters.cfg' -> './config/species/histoplasma/histoplasma_parameters.cfg' 202s '/usr/share/augustus/config/species/histoplasma/histoplasma_weightmatrix.txt' -> './config/species/histoplasma/histoplasma_weightmatrix.txt' 202s '/usr/share/augustus/config/species/histoplasma_capsulatum' -> './config/species/histoplasma_capsulatum' 202s '/usr/share/augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_exon_probs.pbl' -> './config/species/histoplasma_capsulatum/histoplasma_capsulatum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_igenic_probs.pbl' -> './config/species/histoplasma_capsulatum/histoplasma_capsulatum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_intron_probs.pbl' -> './config/species/histoplasma_capsulatum/histoplasma_capsulatum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_metapars.cfg' -> './config/species/histoplasma_capsulatum/histoplasma_capsulatum_metapars.cfg' 202s '/usr/share/augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_parameters.cfg' -> './config/species/histoplasma_capsulatum/histoplasma_capsulatum_parameters.cfg' 202s '/usr/share/augustus/config/species/histoplasma_capsulatum/histoplasma_capsulatum_weightmatrix.txt' -> './config/species/histoplasma_capsulatum/histoplasma_capsulatum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/honeybee1' -> './config/species/honeybee1' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_exon_probs.pbl' -> './config/species/honeybee1/honeybee1_exon_probs.pbl' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_exon_probs.pbl.withoutCRF' -> './config/species/honeybee1/honeybee1_exon_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_igenic_probs.pbl' -> './config/species/honeybee1/honeybee1_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_igenic_probs.pbl.withoutCRF' -> './config/species/honeybee1/honeybee1_igenic_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_intron_probs.pbl' -> './config/species/honeybee1/honeybee1_intron_probs.pbl' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_intron_probs.pbl.withoutCRF' -> './config/species/honeybee1/honeybee1_intron_probs.pbl.withoutCRF' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_metapars.cfg' -> './config/species/honeybee1/honeybee1_metapars.cfg' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_metapars.utr.cfg' -> './config/species/honeybee1/honeybee1_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_parameters.cfg' -> './config/species/honeybee1/honeybee1_parameters.cfg' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_parameters.cfg.orig1' -> './config/species/honeybee1/honeybee1_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_utr_probs.pbl' -> './config/species/honeybee1/honeybee1_utr_probs.pbl' 202s '/usr/share/augustus/config/species/honeybee1/honeybee1_weightmatrix.txt' -> './config/species/honeybee1/honeybee1_weightmatrix.txt' 202s '/usr/share/augustus/config/species/human' -> './config/species/human' 202s '/usr/share/augustus/config/species/human/README.TXT' -> './config/species/human/README.TXT' 202s '/usr/share/augustus/config/species/human/human_exon_probs.pbl' -> './config/species/human/human_exon_probs.pbl' 202s '/usr/share/augustus/config/species/human/human_igenic_probs.pbl' -> './config/species/human/human_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/human/human_intron_probs.pbl' -> './config/species/human/human_intron_probs.pbl' 202s '/usr/share/augustus/config/species/human/human_parameters.cfg' -> './config/species/human/human_parameters.cfg' 202s '/usr/share/augustus/config/species/human/human_trans_shadow_partial_utr.pbl' -> './config/species/human/human_trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/species/human/human_utr_probs.pbl' -> './config/species/human/human_utr_probs.pbl' 202s '/usr/share/augustus/config/species/human/human_weightmatrix.txt' -> './config/species/human/human_weightmatrix.txt' 202s '/usr/share/augustus/config/species/hymenolepis_microstoma' -> './config/species/hymenolepis_microstoma' 202s '/usr/share/augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_exon_probs.pbl' -> './config/species/hymenolepis_microstoma/hymenolepis_microstoma_exon_probs.pbl' 202s '/usr/share/augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_igenic_probs.pbl' -> './config/species/hymenolepis_microstoma/hymenolepis_microstoma_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_intron_probs.pbl' -> './config/species/hymenolepis_microstoma/hymenolepis_microstoma_intron_probs.pbl' 202s '/usr/share/augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.cfg' -> './config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.cfg' 202s '/usr/share/augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.cgp.cfg' -> './config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.utr.cfg' -> './config/species/hymenolepis_microstoma/hymenolepis_microstoma_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_parameters.cfg' -> './config/species/hymenolepis_microstoma/hymenolepis_microstoma_parameters.cfg' 202s '/usr/share/augustus/config/species/hymenolepis_microstoma/hymenolepis_microstoma_weightmatrix.txt' -> './config/species/hymenolepis_microstoma/hymenolepis_microstoma_weightmatrix.txt' 202s '/usr/share/augustus/config/species/hymenolepis_microstoma/make.doc' -> './config/species/hymenolepis_microstoma/make.doc' 202s '/usr/share/augustus/config/species/japaneselamprey' -> './config/species/japaneselamprey' 202s '/usr/share/augustus/config/species/japaneselamprey/japaneselamprey_exon_probs.pbl' -> './config/species/japaneselamprey/japaneselamprey_exon_probs.pbl' 202s '/usr/share/augustus/config/species/japaneselamprey/japaneselamprey_igenic_probs.pbl' -> './config/species/japaneselamprey/japaneselamprey_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/japaneselamprey/japaneselamprey_intron_probs.pbl' -> './config/species/japaneselamprey/japaneselamprey_intron_probs.pbl' 202s '/usr/share/augustus/config/species/japaneselamprey/japaneselamprey_metapars.cfg' -> './config/species/japaneselamprey/japaneselamprey_metapars.cfg' 202s '/usr/share/augustus/config/species/japaneselamprey/japaneselamprey_metapars.utr.cfg' -> './config/species/japaneselamprey/japaneselamprey_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/japaneselamprey/japaneselamprey_parameters.cfg' -> './config/species/japaneselamprey/japaneselamprey_parameters.cfg' 202s '/usr/share/augustus/config/species/japaneselamprey/japaneselamprey_weightmatrix.txt' -> './config/species/japaneselamprey/japaneselamprey_weightmatrix.txt' 202s '/usr/share/augustus/config/species/kluyveromyces_lactis' -> './config/species/kluyveromyces_lactis' 202s '/usr/share/augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_exon_probs.pbl' -> './config/species/kluyveromyces_lactis/kluyveromyces_lactis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_igenic_probs.pbl' -> './config/species/kluyveromyces_lactis/kluyveromyces_lactis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_intron_probs.pbl' -> './config/species/kluyveromyces_lactis/kluyveromyces_lactis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_metapars.cfg' -> './config/species/kluyveromyces_lactis/kluyveromyces_lactis_metapars.cfg' 202s '/usr/share/augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_parameters.cfg' -> './config/species/kluyveromyces_lactis/kluyveromyces_lactis_parameters.cfg' 202s '/usr/share/augustus/config/species/kluyveromyces_lactis/kluyveromyces_lactis_weightmatrix.txt' -> './config/species/kluyveromyces_lactis/kluyveromyces_lactis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/laccaria_bicolor' -> './config/species/laccaria_bicolor' 202s '/usr/share/augustus/config/species/laccaria_bicolor/laccaria_bicolor_exon_probs.pbl' -> './config/species/laccaria_bicolor/laccaria_bicolor_exon_probs.pbl' 202s '/usr/share/augustus/config/species/laccaria_bicolor/laccaria_bicolor_igenic_probs.pbl' -> './config/species/laccaria_bicolor/laccaria_bicolor_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/laccaria_bicolor/laccaria_bicolor_intron_probs.pbl' -> './config/species/laccaria_bicolor/laccaria_bicolor_intron_probs.pbl' 202s '/usr/share/augustus/config/species/laccaria_bicolor/laccaria_bicolor_metapars.cfg' -> './config/species/laccaria_bicolor/laccaria_bicolor_metapars.cfg' 202s '/usr/share/augustus/config/species/laccaria_bicolor/laccaria_bicolor_parameters.cfg' -> './config/species/laccaria_bicolor/laccaria_bicolor_parameters.cfg' 202s '/usr/share/augustus/config/species/laccaria_bicolor/laccaria_bicolor_weightmatrix.txt' -> './config/species/laccaria_bicolor/laccaria_bicolor_weightmatrix.txt' 202s '/usr/share/augustus/config/species/leishmania_tarentolae' -> './config/species/leishmania_tarentolae' 202s '/usr/share/augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_exon_probs.pbl' -> './config/species/leishmania_tarentolae/leishmania_tarentolae_exon_probs.pbl' 202s '/usr/share/augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_igenic_probs.pbl' -> './config/species/leishmania_tarentolae/leishmania_tarentolae_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_metapars.cfg' -> './config/species/leishmania_tarentolae/leishmania_tarentolae_metapars.cfg' 202s '/usr/share/augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_metapars.utr.cfg' -> './config/species/leishmania_tarentolae/leishmania_tarentolae_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_parameters.cfg' -> './config/species/leishmania_tarentolae/leishmania_tarentolae_parameters.cfg' 202s '/usr/share/augustus/config/species/leishmania_tarentolae/leishmania_tarentolae_weightmatrix.txt' -> './config/species/leishmania_tarentolae/leishmania_tarentolae_weightmatrix.txt' 202s '/usr/share/augustus/config/species/lodderomyces_elongisporus' -> './config/species/lodderomyces_elongisporus' 202s '/usr/share/augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_exon_probs.pbl' -> './config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_igenic_probs.pbl' -> './config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_intron_probs.pbl' -> './config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_metapars.cfg' -> './config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_metapars.cfg' 202s '/usr/share/augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_parameters.cfg' -> './config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_parameters.cfg' 202s '/usr/share/augustus/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_weightmatrix.txt' -> './config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/magnaporthe_grisea' -> './config/species/magnaporthe_grisea' 202s '/usr/share/augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_exon_probs.pbl' -> './config/species/magnaporthe_grisea/magnaporthe_grisea_exon_probs.pbl' 202s '/usr/share/augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_igenic_probs.pbl' -> './config/species/magnaporthe_grisea/magnaporthe_grisea_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_intron_probs.pbl' -> './config/species/magnaporthe_grisea/magnaporthe_grisea_intron_probs.pbl' 202s '/usr/share/augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_metapars.cfg' -> './config/species/magnaporthe_grisea/magnaporthe_grisea_metapars.cfg' 202s '/usr/share/augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_parameters.cfg' -> './config/species/magnaporthe_grisea/magnaporthe_grisea_parameters.cfg' 202s '/usr/share/augustus/config/species/magnaporthe_grisea/magnaporthe_grisea_weightmatrix.txt' -> './config/species/magnaporthe_grisea/magnaporthe_grisea_weightmatrix.txt' 202s '/usr/share/augustus/config/species/maize' -> './config/species/maize' 202s '/usr/share/augustus/config/species/maize/maize_exon_probs.pbl' -> './config/species/maize/maize_exon_probs.pbl' 202s '/usr/share/augustus/config/species/maize/maize_igenic_probs.pbl' -> './config/species/maize/maize_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/maize/maize_intron_probs.pbl' -> './config/species/maize/maize_intron_probs.pbl' 202s '/usr/share/augustus/config/species/maize/maize_metapars.cfg' -> './config/species/maize/maize_metapars.cfg' 202s '/usr/share/augustus/config/species/maize/maize_parameters.cfg' -> './config/species/maize/maize_parameters.cfg' 202s '/usr/share/augustus/config/species/maize/maize_splicefile.txt.gz' -> './config/species/maize/maize_splicefile.txt.gz' 202s '/usr/share/augustus/config/species/maize/maize_weightmatrix.txt' -> './config/species/maize/maize_weightmatrix.txt' 202s '/usr/share/augustus/config/species/maize5' -> './config/species/maize5' 202s '/usr/share/augustus/config/species/maize5/maize5_exon_probs.pbl' -> './config/species/maize5/maize5_exon_probs.pbl' 202s '/usr/share/augustus/config/species/maize5/maize5_igenic_probs.pbl' -> './config/species/maize5/maize5_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/maize5/maize5_intron_probs.pbl' -> './config/species/maize5/maize5_intron_probs.pbl' 202s '/usr/share/augustus/config/species/maize5/maize5_metapars.cfg' -> './config/species/maize5/maize5_metapars.cfg' 202s '/usr/share/augustus/config/species/maize5/maize5_metapars.utr.cfg' -> './config/species/maize5/maize5_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/maize5/maize5_parameters.cfg' -> './config/species/maize5/maize5_parameters.cfg' 202s '/usr/share/augustus/config/species/maize5/maize5_utr_probs.pbl' -> './config/species/maize5/maize5_utr_probs.pbl' 202s '/usr/share/augustus/config/species/maize5/maize5_weightmatrix.txt' -> './config/species/maize5/maize5_weightmatrix.txt' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi' -> './config/species/mnemiopsis_leidyi' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/README.TXT' -> './config/species/mnemiopsis_leidyi/README.TXT' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_exon_probs.pbl' -> './config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_exon_probs.pbl' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_igenic_probs.pbl' -> './config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_intron_probs.pbl' -> './config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_intron_probs.pbl' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.cfg' -> './config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.cfg' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.cgp.cfg' -> './config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.utr.cfg' -> './config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_parameters.cfg' -> './config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_parameters.cfg' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_parameters.cgp.cfg' -> './config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_parameters.cgp.cfg' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_utr_probs.pbl' -> './config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_utr_probs.pbl' 202s '/usr/share/augustus/config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_weightmatrix.txt' -> './config/species/mnemiopsis_leidyi/mnemiopsis_leidyi_weightmatrix.txt' 202s '/usr/share/augustus/config/species/nasonia' -> './config/species/nasonia' 202s '/usr/share/augustus/config/species/nasonia/nasonia_exon_probs.pbl' -> './config/species/nasonia/nasonia_exon_probs.pbl' 202s '/usr/share/augustus/config/species/nasonia/nasonia_igenic_probs.pbl' -> './config/species/nasonia/nasonia_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/nasonia/nasonia_intron_probs.pbl' -> './config/species/nasonia/nasonia_intron_probs.pbl' 202s '/usr/share/augustus/config/species/nasonia/nasonia_metapars.cfg' -> './config/species/nasonia/nasonia_metapars.cfg' 202s '/usr/share/augustus/config/species/nasonia/nasonia_parameters.cfg' -> './config/species/nasonia/nasonia_parameters.cfg' 202s '/usr/share/augustus/config/species/nasonia/nasonia_weightmatrix.txt' -> './config/species/nasonia/nasonia_weightmatrix.txt' 202s '/usr/share/augustus/config/species/nematostella_vectensis' -> './config/species/nematostella_vectensis' 202s '/usr/share/augustus/config/species/nematostella_vectensis/README.TXT' -> './config/species/nematostella_vectensis/README.TXT' 202s '/usr/share/augustus/config/species/nematostella_vectensis/nematostella_vectensis_exon_probs.pbl' -> './config/species/nematostella_vectensis/nematostella_vectensis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/nematostella_vectensis/nematostella_vectensis_igenic_probs.pbl' -> './config/species/nematostella_vectensis/nematostella_vectensis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/nematostella_vectensis/nematostella_vectensis_intron_probs.pbl' -> './config/species/nematostella_vectensis/nematostella_vectensis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/nematostella_vectensis/nematostella_vectensis_parameters.cfg' -> './config/species/nematostella_vectensis/nematostella_vectensis_parameters.cfg' 202s '/usr/share/augustus/config/species/nematostella_vectensis/nematostella_vectensis_weightmatrix.txt' -> './config/species/nematostella_vectensis/nematostella_vectensis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/neurospora' -> './config/species/neurospora' 202s '/usr/share/augustus/config/species/neurospora/neurospora_exon_probs.pbl' -> './config/species/neurospora/neurospora_exon_probs.pbl' 202s '/usr/share/augustus/config/species/neurospora/neurospora_igenic_probs.pbl' -> './config/species/neurospora/neurospora_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/neurospora/neurospora_intron_probs.pbl' -> './config/species/neurospora/neurospora_intron_probs.pbl' 202s '/usr/share/augustus/config/species/neurospora/neurospora_parameters.cfg' -> './config/species/neurospora/neurospora_parameters.cfg' 202s '/usr/share/augustus/config/species/neurospora/neurospora_weightmatrix.txt' -> './config/species/neurospora/neurospora_weightmatrix.txt' 202s '/usr/share/augustus/config/species/neurospora_crassa' -> './config/species/neurospora_crassa' 202s '/usr/share/augustus/config/species/neurospora_crassa/neurospora_crassa_exon_probs.pbl' -> './config/species/neurospora_crassa/neurospora_crassa_exon_probs.pbl' 202s '/usr/share/augustus/config/species/neurospora_crassa/neurospora_crassa_igenic_probs.pbl' -> './config/species/neurospora_crassa/neurospora_crassa_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/neurospora_crassa/neurospora_crassa_intron_probs.pbl' -> './config/species/neurospora_crassa/neurospora_crassa_intron_probs.pbl' 202s '/usr/share/augustus/config/species/neurospora_crassa/neurospora_crassa_metapars.cfg' -> './config/species/neurospora_crassa/neurospora_crassa_metapars.cfg' 202s '/usr/share/augustus/config/species/neurospora_crassa/neurospora_crassa_parameters.cfg' -> './config/species/neurospora_crassa/neurospora_crassa_parameters.cfg' 202s '/usr/share/augustus/config/species/neurospora_crassa/neurospora_crassa_weightmatrix.txt' -> './config/species/neurospora_crassa/neurospora_crassa_weightmatrix.txt' 202s '/usr/share/augustus/config/species/parasteatoda' -> './config/species/parasteatoda' 202s '/usr/share/augustus/config/species/parasteatoda/parasteatoda_exon_probs.pbl' -> './config/species/parasteatoda/parasteatoda_exon_probs.pbl' 202s '/usr/share/augustus/config/species/parasteatoda/parasteatoda_igenic_probs.pbl' -> './config/species/parasteatoda/parasteatoda_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/parasteatoda/parasteatoda_intron_probs.pbl' -> './config/species/parasteatoda/parasteatoda_intron_probs.pbl' 202s '/usr/share/augustus/config/species/parasteatoda/parasteatoda_parameters.cfg' -> './config/species/parasteatoda/parasteatoda_parameters.cfg' 202s '/usr/share/augustus/config/species/parasteatoda/parasteatoda_utr_probs.pbl' -> './config/species/parasteatoda/parasteatoda_utr_probs.pbl' 202s '/usr/share/augustus/config/species/parasteatoda/parasteatoda_weightmatrix.txt' -> './config/species/parasteatoda/parasteatoda_weightmatrix.txt' 202s '/usr/share/augustus/config/species/pchrysosporium' -> './config/species/pchrysosporium' 202s '/usr/share/augustus/config/species/pchrysosporium/pchrysosporium_exon_probs.pbl' -> './config/species/pchrysosporium/pchrysosporium_exon_probs.pbl' 202s '/usr/share/augustus/config/species/pchrysosporium/pchrysosporium_igenic_probs.pbl' -> './config/species/pchrysosporium/pchrysosporium_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/pchrysosporium/pchrysosporium_intron_probs.pbl' -> './config/species/pchrysosporium/pchrysosporium_intron_probs.pbl' 202s '/usr/share/augustus/config/species/pchrysosporium/pchrysosporium_parameters.cfg' -> './config/species/pchrysosporium/pchrysosporium_parameters.cfg' 202s '/usr/share/augustus/config/species/pchrysosporium/pchrysosporium_weightmatrix.txt' -> './config/species/pchrysosporium/pchrysosporium_weightmatrix.txt' 202s '/usr/share/augustus/config/species/pea_aphid' -> './config/species/pea_aphid' 202s '/usr/share/augustus/config/species/pea_aphid/pea_aphid_exon_probs.pbl' -> './config/species/pea_aphid/pea_aphid_exon_probs.pbl' 202s '/usr/share/augustus/config/species/pea_aphid/pea_aphid_igenic_probs.pbl' -> './config/species/pea_aphid/pea_aphid_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/pea_aphid/pea_aphid_intron_probs.pbl' -> './config/species/pea_aphid/pea_aphid_intron_probs.pbl' 202s '/usr/share/augustus/config/species/pea_aphid/pea_aphid_metapars.cfg' -> './config/species/pea_aphid/pea_aphid_metapars.cfg' 202s '/usr/share/augustus/config/species/pea_aphid/pea_aphid_parameters.cfg' -> './config/species/pea_aphid/pea_aphid_parameters.cfg' 202s '/usr/share/augustus/config/species/pea_aphid/pea_aphid_trans_shadow_partial_utr.pbl' -> './config/species/pea_aphid/pea_aphid_trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/species/pea_aphid/pea_aphid_utr_probs.pbl' -> './config/species/pea_aphid/pea_aphid_utr_probs.pbl' 202s '/usr/share/augustus/config/species/pea_aphid/pea_aphid_weightmatrix.txt' -> './config/species/pea_aphid/pea_aphid_weightmatrix.txt' 202s '/usr/share/augustus/config/species/pfalciparum' -> './config/species/pfalciparum' 202s '/usr/share/augustus/config/species/pfalciparum/pfalciparum_exon_probs.pbl' -> './config/species/pfalciparum/pfalciparum_exon_probs.pbl' 202s '/usr/share/augustus/config/species/pfalciparum/pfalciparum_igenic_probs.pbl' -> './config/species/pfalciparum/pfalciparum_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/pfalciparum/pfalciparum_intron_probs.pbl' -> './config/species/pfalciparum/pfalciparum_intron_probs.pbl' 202s '/usr/share/augustus/config/species/pfalciparum/pfalciparum_metapars.cfg' -> './config/species/pfalciparum/pfalciparum_metapars.cfg' 202s '/usr/share/augustus/config/species/pfalciparum/pfalciparum_parameters.cfg' -> './config/species/pfalciparum/pfalciparum_parameters.cfg' 202s '/usr/share/augustus/config/species/pfalciparum/pfalciparum_trans_shadow_partial.pbl' -> './config/species/pfalciparum/pfalciparum_trans_shadow_partial.pbl' 202s '/usr/share/augustus/config/species/pfalciparum/pfalciparum_weightmatrix.txt' -> './config/species/pfalciparum/pfalciparum_weightmatrix.txt' 202s '/usr/share/augustus/config/species/phanerochaete_chrysosporium' -> './config/species/phanerochaete_chrysosporium' 202s '/usr/share/augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_exon_probs.pbl' -> './config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_exon_probs.pbl' 202s '/usr/share/augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_igenic_probs.pbl' -> './config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_intron_probs.pbl' -> './config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_intron_probs.pbl' 202s '/usr/share/augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_metapars.cfg' -> './config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_metapars.cfg' 202s '/usr/share/augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_parameters.cfg' -> './config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_parameters.cfg' 202s '/usr/share/augustus/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_weightmatrix.txt' -> './config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_weightmatrix.txt' 202s '/usr/share/augustus/config/species/pichia_stipitis' -> './config/species/pichia_stipitis' 202s '/usr/share/augustus/config/species/pichia_stipitis/pichia_stipitis_exon_probs.pbl' -> './config/species/pichia_stipitis/pichia_stipitis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/pichia_stipitis/pichia_stipitis_igenic_probs.pbl' -> './config/species/pichia_stipitis/pichia_stipitis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/pichia_stipitis/pichia_stipitis_intron_probs.pbl' -> './config/species/pichia_stipitis/pichia_stipitis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/pichia_stipitis/pichia_stipitis_metapars.cfg' -> './config/species/pichia_stipitis/pichia_stipitis_metapars.cfg' 202s '/usr/share/augustus/config/species/pichia_stipitis/pichia_stipitis_parameters.cfg' -> './config/species/pichia_stipitis/pichia_stipitis_parameters.cfg' 202s '/usr/share/augustus/config/species/pichia_stipitis/pichia_stipitis_weightmatrix.txt' -> './config/species/pichia_stipitis/pichia_stipitis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/pisaster' -> './config/species/pisaster' 202s '/usr/share/augustus/config/species/pisaster/extrinsic.pisaster.cfg' -> './config/species/pisaster/extrinsic.pisaster.cfg' 202s '/usr/share/augustus/config/species/pisaster/pisaster_exon_probs.pbl' -> './config/species/pisaster/pisaster_exon_probs.pbl' 202s '/usr/share/augustus/config/species/pisaster/pisaster_igenic_probs.pbl' -> './config/species/pisaster/pisaster_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/pisaster/pisaster_intron_probs.pbl' -> './config/species/pisaster/pisaster_intron_probs.pbl' 202s '/usr/share/augustus/config/species/pisaster/pisaster_metapars.cfg' -> './config/species/pisaster/pisaster_metapars.cfg' 202s '/usr/share/augustus/config/species/pisaster/pisaster_metapars.cgp.cfg' -> './config/species/pisaster/pisaster_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/pisaster/pisaster_metapars.utr.cfg' -> './config/species/pisaster/pisaster_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/pisaster/pisaster_parameters.cfg' -> './config/species/pisaster/pisaster_parameters.cfg' 202s '/usr/share/augustus/config/species/pisaster/pisaster_weightmatrix.txt' -> './config/species/pisaster/pisaster_weightmatrix.txt' 202s '/usr/share/augustus/config/species/pneumocystis' -> './config/species/pneumocystis' 202s '/usr/share/augustus/config/species/pneumocystis/README.TXT' -> './config/species/pneumocystis/README.TXT' 202s '/usr/share/augustus/config/species/pneumocystis/pneumocystis_exon_probs.pbl' -> './config/species/pneumocystis/pneumocystis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/pneumocystis/pneumocystis_igenic_probs.pbl' -> './config/species/pneumocystis/pneumocystis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/pneumocystis/pneumocystis_intron_probs.pbl' -> './config/species/pneumocystis/pneumocystis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/pneumocystis/pneumocystis_metapars.cfg' -> './config/species/pneumocystis/pneumocystis_metapars.cfg' 202s '/usr/share/augustus/config/species/pneumocystis/pneumocystis_metaparsBAK.cfg' -> './config/species/pneumocystis/pneumocystis_metaparsBAK.cfg' 202s '/usr/share/augustus/config/species/pneumocystis/pneumocystis_parameters.cfg' -> './config/species/pneumocystis/pneumocystis_parameters.cfg' 202s '/usr/share/augustus/config/species/pneumocystis/pneumocystis_weightmatrix.txt' -> './config/species/pneumocystis/pneumocystis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/rhincodon' -> './config/species/rhincodon' 202s '/usr/share/augustus/config/species/rhincodon/rhincodon_exon_probs.pbl' -> './config/species/rhincodon/rhincodon_exon_probs.pbl' 202s '/usr/share/augustus/config/species/rhincodon/rhincodon_igenic_probs.pbl' -> './config/species/rhincodon/rhincodon_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/rhincodon/rhincodon_intron_probs.pbl' -> './config/species/rhincodon/rhincodon_intron_probs.pbl' 202s '/usr/share/augustus/config/species/rhincodon/rhincodon_metapars.cfg' -> './config/species/rhincodon/rhincodon_metapars.cfg' 202s '/usr/share/augustus/config/species/rhincodon/rhincodon_metapars.cgp.cfg' -> './config/species/rhincodon/rhincodon_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/rhincodon/rhincodon_metapars.utr.cfg' -> './config/species/rhincodon/rhincodon_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/rhincodon/rhincodon_parameters.cfg' -> './config/species/rhincodon/rhincodon_parameters.cfg' 202s '/usr/share/augustus/config/species/rhincodon/rhincodon_parameters.cfg.orig1' -> './config/species/rhincodon/rhincodon_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/rhincodon/rhincodon_weightmatrix.txt' -> './config/species/rhincodon/rhincodon_weightmatrix.txt' 202s '/usr/share/augustus/config/species/rhizopus_oryzae' -> './config/species/rhizopus_oryzae' 202s '/usr/share/augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_exon_probs.pbl' -> './config/species/rhizopus_oryzae/rhizopus_oryzae_exon_probs.pbl' 202s '/usr/share/augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_igenic_probs.pbl' -> './config/species/rhizopus_oryzae/rhizopus_oryzae_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_intron_probs.pbl' -> './config/species/rhizopus_oryzae/rhizopus_oryzae_intron_probs.pbl' 202s '/usr/share/augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_metapars.cfg' -> './config/species/rhizopus_oryzae/rhizopus_oryzae_metapars.cfg' 202s '/usr/share/augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_parameters.cfg' -> './config/species/rhizopus_oryzae/rhizopus_oryzae_parameters.cfg' 202s '/usr/share/augustus/config/species/rhizopus_oryzae/rhizopus_oryzae_weightmatrix.txt' -> './config/species/rhizopus_oryzae/rhizopus_oryzae_weightmatrix.txt' 202s '/usr/share/augustus/config/species/rhodnius' -> './config/species/rhodnius' 202s '/usr/share/augustus/config/species/rhodnius/rhodnius_exon_probs.pbl' -> './config/species/rhodnius/rhodnius_exon_probs.pbl' 202s '/usr/share/augustus/config/species/rhodnius/rhodnius_igenic_probs.pbl' -> './config/species/rhodnius/rhodnius_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/rhodnius/rhodnius_intron_probs.pbl' -> './config/species/rhodnius/rhodnius_intron_probs.pbl' 202s '/usr/share/augustus/config/species/rhodnius/rhodnius_metapars.cfg' -> './config/species/rhodnius/rhodnius_metapars.cfg' 202s '/usr/share/augustus/config/species/rhodnius/rhodnius_metapars.utr.cfg' -> './config/species/rhodnius/rhodnius_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/rhodnius/rhodnius_parameters.cfg' -> './config/species/rhodnius/rhodnius_parameters.cfg' 202s '/usr/share/augustus/config/species/rhodnius/rhodnius_utr_probs.pbl' -> './config/species/rhodnius/rhodnius_utr_probs.pbl' 202s '/usr/share/augustus/config/species/rhodnius/rhodnius_weightmatrix.txt' -> './config/species/rhodnius/rhodnius_weightmatrix.txt' 202s '/usr/share/augustus/config/species/rice' -> './config/species/rice' 202s '/usr/share/augustus/config/species/rice/README.TXT' -> './config/species/rice/README.TXT' 202s '/usr/share/augustus/config/species/rice/rice_exon_probs.pbl' -> './config/species/rice/rice_exon_probs.pbl' 202s '/usr/share/augustus/config/species/rice/rice_igenic_probs.pbl' -> './config/species/rice/rice_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/rice/rice_intron_probs.pbl' -> './config/species/rice/rice_intron_probs.pbl' 202s '/usr/share/augustus/config/species/rice/rice_metapars.cfg' -> './config/species/rice/rice_metapars.cfg' 202s '/usr/share/augustus/config/species/rice/rice_metapars.utr.cfg' -> './config/species/rice/rice_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/rice/rice_parameters.cfg' -> './config/species/rice/rice_parameters.cfg' 202s '/usr/share/augustus/config/species/rice/rice_utr_probs.pbl' -> './config/species/rice/rice_utr_probs.pbl' 202s '/usr/share/augustus/config/species/rice/rice_weightmatrix.txt' -> './config/species/rice/rice_weightmatrix.txt' 202s '/usr/share/augustus/config/species/s_aureus' -> './config/species/s_aureus' 202s '/usr/share/augustus/config/species/s_aureus/README.TXT' -> './config/species/s_aureus/README.TXT' 202s '/usr/share/augustus/config/species/s_aureus/s_aureus_exon_probs.pbl' -> './config/species/s_aureus/s_aureus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/s_aureus/s_aureus_igenic_probs.pbl' -> './config/species/s_aureus/s_aureus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/s_aureus/s_aureus_metapars.cfg' -> './config/species/s_aureus/s_aureus_metapars.cfg' 202s '/usr/share/augustus/config/species/s_aureus/s_aureus_metapars.utr.cfg' -> './config/species/s_aureus/s_aureus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/s_aureus/s_aureus_ovlp_len.pbl' -> './config/species/s_aureus/s_aureus_ovlp_len.pbl' 202s '/usr/share/augustus/config/species/s_aureus/s_aureus_parameters.cfg' -> './config/species/s_aureus/s_aureus_parameters.cfg' 202s '/usr/share/augustus/config/species/s_aureus/s_aureus_parameters.cgp.cfg' -> './config/species/s_aureus/s_aureus_parameters.cgp.cfg' 202s '/usr/share/augustus/config/species/s_aureus/s_aureus_trans_shadow_bacterium.pbl' -> './config/species/s_aureus/s_aureus_trans_shadow_bacterium.pbl' 202s '/usr/share/augustus/config/species/s_aureus/s_aureus_weightmatrix.txt' -> './config/species/s_aureus/s_aureus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/s_pneumoniae' -> './config/species/s_pneumoniae' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_exon_probs.pbl' -> './config/species/s_pneumoniae/s_pneumoniae_exon_probs.pbl' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_igenic_probs.pbl' -> './config/species/s_pneumoniae/s_pneumoniae_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_metapars.cfg' -> './config/species/s_pneumoniae/s_pneumoniae_metapars.cfg' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_metapars.utr.cfg' -> './config/species/s_pneumoniae/s_pneumoniae_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_ovlp_len.pbl' -> './config/species/s_pneumoniae/s_pneumoniae_ovlp_len.pbl' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg' -> './config/species/s_pneumoniae/s_pneumoniae_parameters.cfg' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig1' -> './config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig2' -> './config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig2' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig3' -> './config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig3' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig4' -> './config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig4' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_trans_shadow_bacterium.pbl' -> './config/species/s_pneumoniae/s_pneumoniae_trans_shadow_bacterium.pbl' 202s '/usr/share/augustus/config/species/s_pneumoniae/s_pneumoniae_weightmatrix.txt' -> './config/species/s_pneumoniae/s_pneumoniae_weightmatrix.txt' 202s '/usr/share/augustus/config/species/saccharomyces' -> './config/species/saccharomyces' 202s '/usr/share/augustus/config/species/saccharomyces/saccharomyces_exon_probs.pbl' -> './config/species/saccharomyces/saccharomyces_exon_probs.pbl' 202s '/usr/share/augustus/config/species/saccharomyces/saccharomyces_igenic_probs.pbl' -> './config/species/saccharomyces/saccharomyces_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/saccharomyces/saccharomyces_intron_probs.pbl' -> './config/species/saccharomyces/saccharomyces_intron_probs.pbl' 202s '/usr/share/augustus/config/species/saccharomyces/saccharomyces_parameters.cfg' -> './config/species/saccharomyces/saccharomyces_parameters.cfg' 202s '/usr/share/augustus/config/species/saccharomyces/saccharomyces_weightmatrix.txt' -> './config/species/saccharomyces/saccharomyces_weightmatrix.txt' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_S288C' -> './config/species/saccharomyces_cerevisiae_S288C' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_exon_probs.pbl' -> './config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_exon_probs.pbl' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_igenic_probs.pbl' -> './config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_intron_probs.pbl' -> './config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_intron_probs.pbl' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_metapars.cfg' -> './config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_metapars.cfg' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_parameters.cfg' -> './config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_parameters.cfg' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_weightmatrix.txt' -> './config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_weightmatrix.txt' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1' -> './config/species/saccharomyces_cerevisiae_rm11-1a_1' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_exon_probs.pbl' -> './config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_exon_probs.pbl' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_igenic_probs.pbl' -> './config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_intron_probs.pbl' -> './config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_intron_probs.pbl' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_metapars.cfg' -> './config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_metapars.cfg' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_parameters.cfg' -> './config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_parameters.cfg' 202s '/usr/share/augustus/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_weightmatrix.txt' -> './config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_weightmatrix.txt' 202s '/usr/share/augustus/config/species/schistosoma' -> './config/species/schistosoma' 202s '/usr/share/augustus/config/species/schistosoma/schistosoma_exon_probs.pbl' -> './config/species/schistosoma/schistosoma_exon_probs.pbl' 202s '/usr/share/augustus/config/species/schistosoma/schistosoma_igenic_probs.pbl' -> './config/species/schistosoma/schistosoma_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/schistosoma/schistosoma_intron_probs.pbl' -> './config/species/schistosoma/schistosoma_intron_probs.pbl' 202s '/usr/share/augustus/config/species/schistosoma/schistosoma_metapars.cfg' -> './config/species/schistosoma/schistosoma_metapars.cfg' 202s '/usr/share/augustus/config/species/schistosoma/schistosoma_parameters.cfg' -> './config/species/schistosoma/schistosoma_parameters.cfg' 202s '/usr/share/augustus/config/species/schistosoma/schistosoma_parameters.cfg.opt' -> './config/species/schistosoma/schistosoma_parameters.cfg.opt' 202s '/usr/share/augustus/config/species/schistosoma/schistosoma_splicefile.txt' -> './config/species/schistosoma/schistosoma_splicefile.txt' 202s '/usr/share/augustus/config/species/schistosoma/schistosoma_weightmatrix.txt' -> './config/species/schistosoma/schistosoma_weightmatrix.txt' 202s '/usr/share/augustus/config/species/schistosoma2' -> './config/species/schistosoma2' 202s '/usr/share/augustus/config/species/schistosoma2/README.TXT' -> './config/species/schistosoma2/README.TXT' 202s '/usr/share/augustus/config/species/schistosoma2/schistosoma2_exon_probs.pbl' -> './config/species/schistosoma2/schistosoma2_exon_probs.pbl' 202s '/usr/share/augustus/config/species/schistosoma2/schistosoma2_igenic_probs.pbl' -> './config/species/schistosoma2/schistosoma2_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/schistosoma2/schistosoma2_intron_probs.pbl' -> './config/species/schistosoma2/schistosoma2_intron_probs.pbl' 202s '/usr/share/augustus/config/species/schistosoma2/schistosoma2_metapars.cfg' -> './config/species/schistosoma2/schistosoma2_metapars.cfg' 202s '/usr/share/augustus/config/species/schistosoma2/schistosoma2_metapars.cgp.cfg' -> './config/species/schistosoma2/schistosoma2_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/schistosoma2/schistosoma2_metapars.utr.cfg' -> './config/species/schistosoma2/schistosoma2_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/schistosoma2/schistosoma2_parameters.cfg' -> './config/species/schistosoma2/schistosoma2_parameters.cfg' 202s '/usr/share/augustus/config/species/schistosoma2/schistosoma2_utr_probs.pbl' -> './config/species/schistosoma2/schistosoma2_utr_probs.pbl' 202s '/usr/share/augustus/config/species/schistosoma2/schistosoma2_weightmatrix.txt' -> './config/species/schistosoma2/schistosoma2_weightmatrix.txt' 202s '/usr/share/augustus/config/species/schizosaccharomyces_pombe' -> './config/species/schizosaccharomyces_pombe' 202s '/usr/share/augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_exon_probs.pbl' -> './config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_exon_probs.pbl' 202s '/usr/share/augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_igenic_probs.pbl' -> './config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_intron_probs.pbl' -> './config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_intron_probs.pbl' 202s '/usr/share/augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_metapars.cfg' -> './config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_metapars.cfg' 202s '/usr/share/augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_parameters.cfg' -> './config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_parameters.cfg' 202s '/usr/share/augustus/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_weightmatrix.txt' -> './config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_weightmatrix.txt' 202s '/usr/share/augustus/config/species/scyliorhinus' -> './config/species/scyliorhinus' 202s '/usr/share/augustus/config/species/scyliorhinus/scyliorhinus_exon_probs.pbl' -> './config/species/scyliorhinus/scyliorhinus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/scyliorhinus/scyliorhinus_igenic_probs.pbl' -> './config/species/scyliorhinus/scyliorhinus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/scyliorhinus/scyliorhinus_intron_probs.pbl' -> './config/species/scyliorhinus/scyliorhinus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/scyliorhinus/scyliorhinus_metapars.cfg' -> './config/species/scyliorhinus/scyliorhinus_metapars.cfg' 202s '/usr/share/augustus/config/species/scyliorhinus/scyliorhinus_metapars.cgp.cfg' -> './config/species/scyliorhinus/scyliorhinus_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/scyliorhinus/scyliorhinus_metapars.utr.cfg' -> './config/species/scyliorhinus/scyliorhinus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/scyliorhinus/scyliorhinus_parameters.cfg' -> './config/species/scyliorhinus/scyliorhinus_parameters.cfg' 202s '/usr/share/augustus/config/species/scyliorhinus/scyliorhinus_parameters.cfg.orig1' -> './config/species/scyliorhinus/scyliorhinus_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/scyliorhinus/scyliorhinus_weightmatrix.txt' -> './config/species/scyliorhinus/scyliorhinus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/sealamprey' -> './config/species/sealamprey' 202s '/usr/share/augustus/config/species/sealamprey/sealamprey_exon_probs.pbl' -> './config/species/sealamprey/sealamprey_exon_probs.pbl' 202s '/usr/share/augustus/config/species/sealamprey/sealamprey_igenic_probs.pbl' -> './config/species/sealamprey/sealamprey_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/sealamprey/sealamprey_intron_probs.pbl' -> './config/species/sealamprey/sealamprey_intron_probs.pbl' 202s '/usr/share/augustus/config/species/sealamprey/sealamprey_metapars.cfg' -> './config/species/sealamprey/sealamprey_metapars.cfg' 202s '/usr/share/augustus/config/species/sealamprey/sealamprey_parameters.cfg' -> './config/species/sealamprey/sealamprey_parameters.cfg' 202s '/usr/share/augustus/config/species/sealamprey/sealamprey_weightmatrix.txt' -> './config/species/sealamprey/sealamprey_weightmatrix.txt' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus' -> './config/species/strongylocentrotus_purpuratus' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/README.TXT' -> './config/species/strongylocentrotus_purpuratus/README.TXT' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_exon_probs.pbl' -> './config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_igenic_probs.pbl' -> './config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_intron_probs.pbl' -> './config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_intron_probs.pbl' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.cfg' -> './config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.cfg' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.cgp.cfg' -> './config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.utr.cfg' -> './config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_parameters.cfg' -> './config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_parameters.cfg' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_parameters.cgp.cfg' -> './config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_parameters.cgp.cfg' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_utr_probs.pbl' -> './config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_utr_probs.pbl' 202s '/usr/share/augustus/config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_weightmatrix.txt' -> './config/species/strongylocentrotus_purpuratus/strongylocentrotus_purpuratus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/sulfolobus_solfataricus' -> './config/species/sulfolobus_solfataricus' 202s '/usr/share/augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_exon_probs.pbl' -> './config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_exon_probs.pbl' 202s '/usr/share/augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_igenic_probs.pbl' -> './config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_metapars.cfg' -> './config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_metapars.cfg' 202s '/usr/share/augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_metapars.utr.cfg' -> './config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_ovlp_len.pbl' -> './config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_ovlp_len.pbl' 202s '/usr/share/augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_parameters.cfg' -> './config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_parameters.cfg' 202s '/usr/share/augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_trans_shadow_bacterium.pbl' -> './config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_trans_shadow_bacterium.pbl' 202s '/usr/share/augustus/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_weightmatrix.txt' -> './config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_weightmatrix.txt' 202s '/usr/share/augustus/config/species/sunflower' -> './config/species/sunflower' 202s '/usr/share/augustus/config/species/sunflower/README.TXT' -> './config/species/sunflower/README.TXT' 202s '/usr/share/augustus/config/species/sunflower/sunflower_exon_probs.pbl' -> './config/species/sunflower/sunflower_exon_probs.pbl' 202s '/usr/share/augustus/config/species/sunflower/sunflower_igenic_probs.pbl' -> './config/species/sunflower/sunflower_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/sunflower/sunflower_intron_probs.pbl' -> './config/species/sunflower/sunflower_intron_probs.pbl' 202s '/usr/share/augustus/config/species/sunflower/sunflower_metapars.cfg' -> './config/species/sunflower/sunflower_metapars.cfg' 202s '/usr/share/augustus/config/species/sunflower/sunflower_metapars.cgp.cfg' -> './config/species/sunflower/sunflower_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/sunflower/sunflower_metapars.utr.cfg' -> './config/species/sunflower/sunflower_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/sunflower/sunflower_parameters.cfg' -> './config/species/sunflower/sunflower_parameters.cfg' 202s '/usr/share/augustus/config/species/sunflower/sunflower_weightmatrix.txt' -> './config/species/sunflower/sunflower_weightmatrix.txt' 202s '/usr/share/augustus/config/species/template_prokaryotic' -> './config/species/template_prokaryotic' 202s '/usr/share/augustus/config/species/template_prokaryotic/template_prokaryotic_metapars.cfg' -> './config/species/template_prokaryotic/template_prokaryotic_metapars.cfg' 202s '/usr/share/augustus/config/species/template_prokaryotic/template_prokaryotic_metapars.utr.cfg' -> './config/species/template_prokaryotic/template_prokaryotic_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/template_prokaryotic/template_prokaryotic_ovlp_len.pbl' -> './config/species/template_prokaryotic/template_prokaryotic_ovlp_len.pbl' 202s '/usr/share/augustus/config/species/template_prokaryotic/template_prokaryotic_parameters.cfg' -> './config/species/template_prokaryotic/template_prokaryotic_parameters.cfg' 202s '/usr/share/augustus/config/species/template_prokaryotic/template_prokaryotic_trans_shadow_bacterium.pbl' -> './config/species/template_prokaryotic/template_prokaryotic_trans_shadow_bacterium.pbl' 202s '/usr/share/augustus/config/species/template_prokaryotic/template_prokaryotic_weightmatrix.txt' -> './config/species/template_prokaryotic/template_prokaryotic_weightmatrix.txt' 202s '/usr/share/augustus/config/species/tetrahymena' -> './config/species/tetrahymena' 202s '/usr/share/augustus/config/species/tetrahymena/tetrahymena_exon_probs.pbl' -> './config/species/tetrahymena/tetrahymena_exon_probs.pbl' 202s '/usr/share/augustus/config/species/tetrahymena/tetrahymena_igenic_probs.pbl' -> './config/species/tetrahymena/tetrahymena_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/tetrahymena/tetrahymena_intron_probs.pbl' -> './config/species/tetrahymena/tetrahymena_intron_probs.pbl' 202s '/usr/share/augustus/config/species/tetrahymena/tetrahymena_metapars.cfg' -> './config/species/tetrahymena/tetrahymena_metapars.cfg' 202s '/usr/share/augustus/config/species/tetrahymena/tetrahymena_parameters.cfg' -> './config/species/tetrahymena/tetrahymena_parameters.cfg' 202s '/usr/share/augustus/config/species/tetrahymena/tetrahymena_weightmatrix.txt' -> './config/species/tetrahymena/tetrahymena_weightmatrix.txt' 202s '/usr/share/augustus/config/species/thermoanaerobacter_tengcongensis' -> './config/species/thermoanaerobacter_tengcongensis' 202s '/usr/share/augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_exon_probs.pbl' -> './config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_igenic_probs.pbl' -> './config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_metapars.cfg' -> './config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_metapars.cfg' 202s '/usr/share/augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_metapars.utr.cfg' -> './config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_ovlp_len.pbl' -> './config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_ovlp_len.pbl' 202s '/usr/share/augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_parameters.cfg' -> './config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_parameters.cfg' 202s '/usr/share/augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_trans_shadow_bacterium.pbl' -> './config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_trans_shadow_bacterium.pbl' 202s '/usr/share/augustus/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_weightmatrix.txt' -> './config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/tomato' -> './config/species/tomato' 202s '/usr/share/augustus/config/species/tomato/tomato_exon_probs.pbl' -> './config/species/tomato/tomato_exon_probs.pbl' 202s '/usr/share/augustus/config/species/tomato/tomato_igenic_probs.pbl' -> './config/species/tomato/tomato_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/tomato/tomato_intron_probs.pbl' -> './config/species/tomato/tomato_intron_probs.pbl' 202s '/usr/share/augustus/config/species/tomato/tomato_metapars.cfg' -> './config/species/tomato/tomato_metapars.cfg' 202s '/usr/share/augustus/config/species/tomato/tomato_metapars.utr.cfg' -> './config/species/tomato/tomato_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/tomato/tomato_parameters.cfg' -> './config/species/tomato/tomato_parameters.cfg' 202s '/usr/share/augustus/config/species/tomato/tomato_utr_probs.pbl' -> './config/species/tomato/tomato_utr_probs.pbl' 202s '/usr/share/augustus/config/species/tomato/tomato_weightmatrix.txt' -> './config/species/tomato/tomato_weightmatrix.txt' 202s '/usr/share/augustus/config/species/toxoplasma' -> './config/species/toxoplasma' 202s '/usr/share/augustus/config/species/toxoplasma/toxoplasma_exon_probs.pbl' -> './config/species/toxoplasma/toxoplasma_exon_probs.pbl' 202s '/usr/share/augustus/config/species/toxoplasma/toxoplasma_igenic_probs.pbl' -> './config/species/toxoplasma/toxoplasma_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/toxoplasma/toxoplasma_intron_probs.pbl' -> './config/species/toxoplasma/toxoplasma_intron_probs.pbl' 202s '/usr/share/augustus/config/species/toxoplasma/toxoplasma_metaparameters.cfg' -> './config/species/toxoplasma/toxoplasma_metaparameters.cfg' 202s '/usr/share/augustus/config/species/toxoplasma/toxoplasma_parameters.cfg' -> './config/species/toxoplasma/toxoplasma_parameters.cfg' 202s '/usr/share/augustus/config/species/toxoplasma/toxoplasma_trans_shadow_partial_utr.pbl' -> './config/species/toxoplasma/toxoplasma_trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/species/toxoplasma/toxoplasma_utr_probs.pbl' -> './config/species/toxoplasma/toxoplasma_utr_probs.pbl' 202s '/usr/share/augustus/config/species/toxoplasma/toxoplasma_weightmatrix.txt' -> './config/species/toxoplasma/toxoplasma_weightmatrix.txt' 202s '/usr/share/augustus/config/species/tribolium2012' -> './config/species/tribolium2012' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl' -> './config/species/tribolium2012/tribolium2012_exon_probs.pbl' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl.HMM' -> './config/species/tribolium2012/tribolium2012_exon_probs.pbl.HMM' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl1' -> './config/species/tribolium2012/tribolium2012_exon_probs.pbl1' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl2' -> './config/species/tribolium2012/tribolium2012_exon_probs.pbl2' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl3' -> './config/species/tribolium2012/tribolium2012_exon_probs.pbl3' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_exon_probs.pbl4' -> './config/species/tribolium2012/tribolium2012_exon_probs.pbl4' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl' -> './config/species/tribolium2012/tribolium2012_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl.HMM' -> './config/species/tribolium2012/tribolium2012_igenic_probs.pbl.HMM' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl1' -> './config/species/tribolium2012/tribolium2012_igenic_probs.pbl1' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl2' -> './config/species/tribolium2012/tribolium2012_igenic_probs.pbl2' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl3' -> './config/species/tribolium2012/tribolium2012_igenic_probs.pbl3' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_igenic_probs.pbl4' -> './config/species/tribolium2012/tribolium2012_igenic_probs.pbl4' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl' -> './config/species/tribolium2012/tribolium2012_intron_probs.pbl' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl.HMM' -> './config/species/tribolium2012/tribolium2012_intron_probs.pbl.HMM' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl1' -> './config/species/tribolium2012/tribolium2012_intron_probs.pbl1' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl2' -> './config/species/tribolium2012/tribolium2012_intron_probs.pbl2' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl3' -> './config/species/tribolium2012/tribolium2012_intron_probs.pbl3' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_intron_probs.pbl4' -> './config/species/tribolium2012/tribolium2012_intron_probs.pbl4' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_metapars.cfg' -> './config/species/tribolium2012/tribolium2012_metapars.cfg' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_metapars.utr.cfg' -> './config/species/tribolium2012/tribolium2012_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_parameters.cfg' -> './config/species/tribolium2012/tribolium2012_parameters.cfg' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig1' -> './config/species/tribolium2012/tribolium2012_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig2' -> './config/species/tribolium2012/tribolium2012_parameters.cfg.orig2' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig3' -> './config/species/tribolium2012/tribolium2012_parameters.cfg.orig3' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig4' -> './config/species/tribolium2012/tribolium2012_parameters.cfg.orig4' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig5' -> './config/species/tribolium2012/tribolium2012_parameters.cfg.orig5' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig6' -> './config/species/tribolium2012/tribolium2012_parameters.cfg.orig6' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_parameters.cfg.orig7' -> './config/species/tribolium2012/tribolium2012_parameters.cfg.orig7' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_trans_shadow_partial_utr.pbl' -> './config/species/tribolium2012/tribolium2012_trans_shadow_partial_utr.pbl' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_utr_probs.pbl' -> './config/species/tribolium2012/tribolium2012_utr_probs.pbl' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_utr_probs.pbl.HMM' -> './config/species/tribolium2012/tribolium2012_utr_probs.pbl.HMM' 202s '/usr/share/augustus/config/species/tribolium2012/tribolium2012_weightmatrix.txt' -> './config/species/tribolium2012/tribolium2012_weightmatrix.txt' 202s '/usr/share/augustus/config/species/trichinella' -> './config/species/trichinella' 202s '/usr/share/augustus/config/species/trichinella/trichinella_exon_probs.pbl' -> './config/species/trichinella/trichinella_exon_probs.pbl' 202s '/usr/share/augustus/config/species/trichinella/trichinella_igenic_probs.pbl' -> './config/species/trichinella/trichinella_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/trichinella/trichinella_intron_probs.pbl' -> './config/species/trichinella/trichinella_intron_probs.pbl' 202s '/usr/share/augustus/config/species/trichinella/trichinella_metapars.cfg' -> './config/species/trichinella/trichinella_metapars.cfg' 202s '/usr/share/augustus/config/species/trichinella/trichinella_metapars.utr.cfg' -> './config/species/trichinella/trichinella_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/trichinella/trichinella_parameters.cfg' -> './config/species/trichinella/trichinella_parameters.cfg' 202s '/usr/share/augustus/config/species/trichinella/trichinella_utr_probs.pbl' -> './config/species/trichinella/trichinella_utr_probs.pbl' 202s '/usr/share/augustus/config/species/trichinella/trichinella_weightmatrix.txt' -> './config/species/trichinella/trichinella_weightmatrix.txt' 202s '/usr/share/augustus/config/species/ustilago' -> './config/species/ustilago' 202s '/usr/share/augustus/config/species/ustilago/ustilago_exon_probs.pbl' -> './config/species/ustilago/ustilago_exon_probs.pbl' 202s '/usr/share/augustus/config/species/ustilago/ustilago_igenic_probs.pbl' -> './config/species/ustilago/ustilago_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/ustilago/ustilago_intron_probs.pbl' -> './config/species/ustilago/ustilago_intron_probs.pbl' 202s '/usr/share/augustus/config/species/ustilago/ustilago_parameters.cfg' -> './config/species/ustilago/ustilago_parameters.cfg' 202s '/usr/share/augustus/config/species/ustilago/ustilago_weightmatrix.txt' -> './config/species/ustilago/ustilago_weightmatrix.txt' 202s '/usr/share/augustus/config/species/ustilago_maydis' -> './config/species/ustilago_maydis' 202s '/usr/share/augustus/config/species/ustilago_maydis/ustilago_maydis_exon_probs.pbl' -> './config/species/ustilago_maydis/ustilago_maydis_exon_probs.pbl' 202s '/usr/share/augustus/config/species/ustilago_maydis/ustilago_maydis_igenic_probs.pbl' -> './config/species/ustilago_maydis/ustilago_maydis_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/ustilago_maydis/ustilago_maydis_intron_probs.pbl' -> './config/species/ustilago_maydis/ustilago_maydis_intron_probs.pbl' 202s '/usr/share/augustus/config/species/ustilago_maydis/ustilago_maydis_metapars.cfg' -> './config/species/ustilago_maydis/ustilago_maydis_metapars.cfg' 202s '/usr/share/augustus/config/species/ustilago_maydis/ustilago_maydis_parameters.cfg' -> './config/species/ustilago_maydis/ustilago_maydis_parameters.cfg' 202s '/usr/share/augustus/config/species/ustilago_maydis/ustilago_maydis_weightmatrix.txt' -> './config/species/ustilago_maydis/ustilago_maydis_weightmatrix.txt' 202s '/usr/share/augustus/config/species/verticillium_albo_atrum1' -> './config/species/verticillium_albo_atrum1' 202s '/usr/share/augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_exon_probs.pbl' -> './config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_exon_probs.pbl' 202s '/usr/share/augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_igenic_probs.pbl' -> './config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_intron_probs.pbl' -> './config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_intron_probs.pbl' 202s '/usr/share/augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_metapars.cfg' -> './config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_metapars.cfg' 202s '/usr/share/augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_metapars.utr.cfg' -> './config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_parameters.cfg' -> './config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_parameters.cfg' 202s '/usr/share/augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_utr_probs.pbl' -> './config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_utr_probs.pbl' 202s '/usr/share/augustus/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_weightmatrix.txt' -> './config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_weightmatrix.txt' 202s '/usr/share/augustus/config/species/verticillium_longisporum1' -> './config/species/verticillium_longisporum1' 202s '/usr/share/augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_exon_probs.pbl' -> './config/species/verticillium_longisporum1/verticillium_longisporum1_exon_probs.pbl' 202s '/usr/share/augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_igenic_probs.pbl' -> './config/species/verticillium_longisporum1/verticillium_longisporum1_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_intron_probs.pbl' -> './config/species/verticillium_longisporum1/verticillium_longisporum1_intron_probs.pbl' 202s '/usr/share/augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_metapars.cfg' -> './config/species/verticillium_longisporum1/verticillium_longisporum1_metapars.cfg' 202s '/usr/share/augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_metapars.utr.cfg' -> './config/species/verticillium_longisporum1/verticillium_longisporum1_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_parameters.cfg' -> './config/species/verticillium_longisporum1/verticillium_longisporum1_parameters.cfg' 202s '/usr/share/augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_parameters.cfg.orig1' -> './config/species/verticillium_longisporum1/verticillium_longisporum1_parameters.cfg.orig1' 202s '/usr/share/augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_utr_probs.pbl' -> './config/species/verticillium_longisporum1/verticillium_longisporum1_utr_probs.pbl' 202s '/usr/share/augustus/config/species/verticillium_longisporum1/verticillium_longisporum1_weightmatrix.txt' -> './config/species/verticillium_longisporum1/verticillium_longisporum1_weightmatrix.txt' 202s '/usr/share/augustus/config/species/volvox' -> './config/species/volvox' 202s '/usr/share/augustus/config/species/volvox/volvox_exon_probs.pbl' -> './config/species/volvox/volvox_exon_probs.pbl' 202s '/usr/share/augustus/config/species/volvox/volvox_igenic_probs.pbl' -> './config/species/volvox/volvox_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/volvox/volvox_intron_probs.pbl' -> './config/species/volvox/volvox_intron_probs.pbl' 202s '/usr/share/augustus/config/species/volvox/volvox_metapars.cfg' -> './config/species/volvox/volvox_metapars.cfg' 202s '/usr/share/augustus/config/species/volvox/volvox_metapars.cgp.cfg' -> './config/species/volvox/volvox_metapars.cgp.cfg' 202s '/usr/share/augustus/config/species/volvox/volvox_metapars.utr.cfg' -> './config/species/volvox/volvox_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/volvox/volvox_parameters.cfg' -> './config/species/volvox/volvox_parameters.cfg' 202s '/usr/share/augustus/config/species/volvox/volvox_utr_probs.pbl' -> './config/species/volvox/volvox_utr_probs.pbl' 202s '/usr/share/augustus/config/species/volvox/volvox_weightmatrix.txt' -> './config/species/volvox/volvox_weightmatrix.txt' 202s '/usr/share/augustus/config/species/wheat' -> './config/species/wheat' 202s '/usr/share/augustus/config/species/wheat/README.txt' -> './config/species/wheat/README.txt' 202s '/usr/share/augustus/config/species/wheat/wheat_exon_probs.pbl' -> './config/species/wheat/wheat_exon_probs.pbl' 202s '/usr/share/augustus/config/species/wheat/wheat_igenic_probs.pbl' -> './config/species/wheat/wheat_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/wheat/wheat_intron_probs.pbl' -> './config/species/wheat/wheat_intron_probs.pbl' 202s '/usr/share/augustus/config/species/wheat/wheat_parameters.cfg' -> './config/species/wheat/wheat_parameters.cfg' 202s '/usr/share/augustus/config/species/wheat/wheat_utr_probs.pbl' -> './config/species/wheat/wheat_utr_probs.pbl' 202s '/usr/share/augustus/config/species/wheat/wheat_weightmatrix.txt' -> './config/species/wheat/wheat_weightmatrix.txt' 202s '/usr/share/augustus/config/species/yarrowia_lipolytica' -> './config/species/yarrowia_lipolytica' 202s '/usr/share/augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_exon_probs.pbl' -> './config/species/yarrowia_lipolytica/yarrowia_lipolytica_exon_probs.pbl' 202s '/usr/share/augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_igenic_probs.pbl' -> './config/species/yarrowia_lipolytica/yarrowia_lipolytica_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_intron_probs.pbl' -> './config/species/yarrowia_lipolytica/yarrowia_lipolytica_intron_probs.pbl' 202s '/usr/share/augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_metapars.cfg' -> './config/species/yarrowia_lipolytica/yarrowia_lipolytica_metapars.cfg' 202s '/usr/share/augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_metapars.utr.cfg' -> './config/species/yarrowia_lipolytica/yarrowia_lipolytica_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_parameters.cfg' -> './config/species/yarrowia_lipolytica/yarrowia_lipolytica_parameters.cfg' 202s '/usr/share/augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_utr_probs.pbl' -> './config/species/yarrowia_lipolytica/yarrowia_lipolytica_utr_probs.pbl' 202s '/usr/share/augustus/config/species/yarrowia_lipolytica/yarrowia_lipolytica_weightmatrix.txt' -> './config/species/yarrowia_lipolytica/yarrowia_lipolytica_weightmatrix.txt' 202s '/usr/share/augustus/config/species/zebrafish' -> './config/species/zebrafish' 202s '/usr/share/augustus/config/species/zebrafish/README.TXT' -> './config/species/zebrafish/README.TXT' 202s '/usr/share/augustus/config/species/zebrafish/zebrafish_exon_probs.pbl' -> './config/species/zebrafish/zebrafish_exon_probs.pbl' 202s '/usr/share/augustus/config/species/zebrafish/zebrafish_exon_probs.pbl.HMM' -> './config/species/zebrafish/zebrafish_exon_probs.pbl.HMM' 202s '/usr/share/augustus/config/species/zebrafish/zebrafish_igenic_probs.pbl' -> './config/species/zebrafish/zebrafish_igenic_probs.pbl' 202s '/usr/share/augustus/config/species/zebrafish/zebrafish_igenic_probs.pbl.HMM' -> './config/species/zebrafish/zebrafish_igenic_probs.pbl.HMM' 202s '/usr/share/augustus/config/species/zebrafish/zebrafish_intron_probs.pbl' -> './config/species/zebrafish/zebrafish_intron_probs.pbl' 202s '/usr/share/augustus/config/species/zebrafish/zebrafish_intron_probs.pbl.HMM' -> './config/species/zebrafish/zebrafish_intron_probs.pbl.HMM' 202s '/usr/share/augustus/config/species/zebrafish/zebrafish_metapars.cfg' -> './config/species/zebrafish/zebrafish_metapars.cfg' 202s '/usr/share/augustus/config/species/zebrafish/zebrafish_metapars.utr.cfg' -> './config/species/zebrafish/zebrafish_metapars.utr.cfg' 202s '/usr/share/augustus/config/species/zebrafish/zebrafish_parameters.cfg' -> './config/species/zebrafish/zebrafish_parameters.cfg' 202s '/usr/share/augustus/config/species/zebrafish/zebrafish_weightmatrix.txt' -> './config/species/zebrafish/zebrafish_weightmatrix.txt' 202s Will create parameters for a EUKARYOTIC species! 202s creating directory /tmp/tmp.hxqYc5Dsxy/config/species/test/ ... 202s creating /tmp/tmp.hxqYc5Dsxy/config/species/test/test_parameters.cfg ... 202s creating /tmp/tmp.hxqYc5Dsxy/config/species/test/test_weightmatrix.txt ... 202s creating /tmp/tmp.hxqYc5Dsxy/config/species/test/test_metapars.cfg ... 202s The necessary files for training test have been created. 202s Now, either run etraining or optimize_parameters.pl with --species=test. 202s etraining quickly estimates the parameters from a file with training genes. 202s optimize_augustus.pl alternates running etraining and augustus to find optimal metaparameters. 202s 202s # Read in 1 genbank sequences. 202s Quantiles of the GC contents in the training set: 202s 0% 0.402 202s 5% 0.402 10% 0.402 202s 15% 0.402 20% 0.402 202s 25% 0.402 30% 0.402 202s 35% 0.402 40% 0.402 202s 45% 0.402 50% 0.402 202s 55% 0.402 60% 0.402 202s 65% 0.402 70% 0.402 202s 75% 0.402 80% 0.402 202s 85% 0.402 90% 0.402 202s 95% 0.402 100% 0.402 202s HMM-training the parameters... 202s i= 0 bc= (0.237, 0.263, 0.263, 0.237) 202s ** building model for exons *EXON* 202s start codon frequencies: ATG(1) 202s # admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0) 202s number of bases in the reading frames: 570 571 570 202s --- frame = 0 --- minPatSum = 233 202s --- frame = 1 --- minPatSum = 233 202s --- frame = 2 --- minPatSum = 233 202s --- initial frame = 0 --- minPatSum = 233 202s --- initial frame = 1 --- minPatSum = 233 202s --- initial frame = 2 --- minPatSum = 233 202s --- internal exon terminal frame = 0 --- minPatSum = 233 202s --- internal exon terminal frame = 1 --- minPatSum = 233 202s --- internal exon terminal frame = 2 --- minPatSum = 233 202s single, initial, internal, terminal mean exon lengths : 202s n.a. 627 191 7 202s single exon : 0 202s initial exon 0 : 1 202s initial exon 1 : 0 202s initial exon 2 : 0 202s internal exon 0 : 3 202s internal exon 1 : 0 202s internal exon 2 : 3 202s terminal exon : 1 202s Frequency of stop codons: 202s tag: 0 (0) 202s taa: 1 (1) 202s tga: 0 (0) 202s end *EXON* 202s Storing parameters to file... 202s Writing exon model parameters [1] to file /tmp/tmp.hxqYc5Dsxy/config/species/test/test_exon_probs.pbl. 202s # This output was generated with AUGUSTUS (version 3.5.0). 202s # AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de), 202s # O. Keller, S. König, L. Gerischer, L. Romoth, Katharina Hoff, Henry Mehlan and Daniel Honsel. 202s # Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), 202s # Using native and syntenically mapped cDNA alignments to improve de novo gene finding 202s # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 202s # No extrinsic information on sequences given. 202s # Sources of extrinsic information: M RM 202s # Initializing the parameters using config directory /tmp/tmp.hxqYc5Dsxy/config/ ... 202s # test version. Using default transition matrix. 202s # admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0) 202s # Looks like /tmp/autopkgtest.hVJUDr/build.n6f/src/examples/example.fa is in fasta format. 202s # We have hints for 0 sequences and for 0 of the sequences in the input set. 202s # 202s # ----- prediction on sequence number 1 (length = 9453, name = HS04636) ----- 202s # 202s # Predicted genes for sequence number 1 on both strands 202s # start gene g1 202s HS04636 AUGUSTUS gene 1 1163 0.06 + . g1 202s HS04636 AUGUSTUS transcript 1 1163 0.06 + . g1.t1 202s HS04636 AUGUSTUS intron 1 350 0.36 + . transcript_id "g1.t1"; gene_id "g1"; 202s HS04636 AUGUSTUS intron 673 856 0.17 + . transcript_id "g1.t1"; gene_id "g1"; 202s HS04636 AUGUSTUS CDS 351 672 0.11 + 2 transcript_id "g1.t1"; gene_id "g1"; 202s HS04636 AUGUSTUS CDS 857 1163 0.32 + 1 transcript_id "g1.t1"; gene_id "g1"; 202s HS04636 AUGUSTUS stop_codon 1161 1163 . + 0 transcript_id "g1.t1"; gene_id "g1"; 202s # protein sequence = [VQTRHGGGGGRGDSLRPRTSGPLRFLERKPSVLLPSPGIPSKAISPELALGSARAKTAKKKRHLAETCAPGAVELGEE 202s # REGSDRRVGTTPSAPKLGQLPGFPIFSFPVRSTSRNSSAAPPSAPQPDALRQQSLPPRRALPAARMLARALLLCAVLALSHTGEYLAPRTGDSGSTHP 202s # GRVSALTSWVYPSTPTSLRIEKLRDLGKSLDR] 202s # Evidence for and against this transcript: 202s # % of transcript supported by hints (any source): 0 202s # CDS exons: 0/2 202s # CDS introns: 0/2 202s # 5'UTR exons and introns: 0/0 202s # 3'UTR exons and introns: 0/0 202s # hint groups fully obeyed: 0 202s # incompatible hint groups: 0 202s # end gene g1 202s ### 202s # 202s # ----- prediction on sequence number 2 (length = 2344, name = HS08198) ----- 202s # 202s # Predicted genes for sequence number 2 on both strands 202s # start gene g2 202s HS08198 AUGUSTUS gene 1 2271 0.02 - . g2 202s HS08198 AUGUSTUS transcript 1 2271 0.02 - . g2.t1 202s HS08198 AUGUSTUS intron 1 112 0.38 - . transcript_id "g2.t1"; gene_id "g2"; 202s HS08198 AUGUSTUS intron 950 1314 0.05 - . transcript_id "g2.t1"; gene_id "g2"; 202s HS08198 AUGUSTUS intron 2041 2116 0.39 - . transcript_id "g2.t1"; gene_id "g2"; 202s HS08198 AUGUSTUS CDS 113 949 0.16 - 1 transcript_id "g2.t1"; gene_id "g2"; 202s HS08198 AUGUSTUS CDS 1315 2040 0.26 - 1 transcript_id "g2.t1"; gene_id "g2"; 202s HS08198 AUGUSTUS CDS 2117 2271 0.39 - 0 transcript_id "g2.t1"; gene_id "g2"; 202s HS08198 AUGUSTUS start_codon 2269 2271 . - 0 transcript_id "g2.t1"; gene_id "g2"; 202s # protein sequence = [MAYAREDLPSQIPRAEIGPVTLRGLQPTGSAGLLKRRGGGREGLGGTGAGPDRQKIPCPGWQGPDLRLVSRRTGSGHP 202s # TGGVVSRGTDFSALELCAGLTSSLLQQRRDSAGASGPPHHAAMLAPAVHSPSRTWNWSAASQKPGAPRQGSGWTSAREWGWLSWGPAGDTHRTWGSRR 202s # SGPQSGGPPGPAAQTHSGPSRSQGASGLQGRQGSWGPGTRRRGGLWERGLCVPCPSGPSSLLPHQACLSLLPGPLLSRRIRMGERKCVPMAHPAPRGG 202s # PVSVQSLSACLVTEAGPHIPPGAERRVGVRVQGCSGTHSFRKVLTAMAVPWGATCSVVASARWPCSCRKRQAEPTATRSQVPANWGQTMGELEGTVGG 202s # PLTCFPLHPPQLHLLPSPPQQLLPVSLYPSHNFYLPPSTPPNFYLLRIKIGLGLDGADGGCGPAWPLRLLAQRASCQEQSQEGRSPRGQHGGGSRVAG 202s # LWEAKGSTTKSQDRVYSAVTEPSPGSPCPSVASPPPTSSLLVSLASICTSWQGLAPCPMYKVRVDLWLFIHFSCTPDFHRQSLALYTLSSLNHHPVVL 202s # SPWP] 202s # Evidence for and against this transcript: 202s # % of transcript supported by hints (any source): 0 202s # CDS exons: 0/3 202s # CDS introns: 0/3 202s # 5'UTR exons and introns: 0/0 202s # 3'UTR exons and introns: 0/0 202s # hint groups fully obeyed: 0 202s # incompatible hint groups: 0 202s # end gene g2 202s ### 202s # command line: 202s # augustus --species=test /tmp/autopkgtest.hVJUDr/build.n6f/src/examples/example.fa 203s autopkgtest [17:18:55]: test test-example-with-training: -----------------------] 203s autopkgtest [17:18:55]: test test-example-with-training: - - - - - - - - - - results - - - - - - - - - - 203s test-example-with-training PASS 203s autopkgtest [17:18:55]: @@@@@@@@@@@@@@@@@@@@ summary 203s test-example PASS 203s test-example-with-training PASS