0s autopkgtest [11:45:39]: starting date and time: 2025-05-06 11:45:39+0000
  0s autopkgtest [11:45:39]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [11:45:39]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vtb4jksy/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:nlme --apt-upgrade r-cran-ape --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=nlme/3.1.168-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-s390x-4.secgroup --name adt-questing-s390x-r-cran-ape-20250506-114539-juju-7f2275-prod-proposed-migration-environment-20-d1ad6360-1e09-4112-8d70-16b87d62f0c6 --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
198s autopkgtest [11:48:57]: testbed dpkg architecture: s390x
198s autopkgtest [11:48:57]: testbed apt version: 3.0.0
199s autopkgtest [11:48:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup
200s autopkgtest [11:48:59]: testbed release detected to be: None
201s autopkgtest [11:49:00]: updating testbed package index (apt update)
203s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
203s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
203s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
203s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
203s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [27.3 kB]
203s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [595 kB]
204s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [72.4 kB]
204s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [136 kB]
204s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [612 kB]
204s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [15.0 kB]
204s Fetched 1567 kB in 2s (729 kB/s)
209s Reading package lists...
210s autopkgtest [11:49:09]: upgrading testbed (apt dist-upgrade and autopurge)
210s Reading package lists...
211s Building dependency tree...
211s Reading state information...
212s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
213s Starting 2 pkgProblemResolver with broken count: 0
213s Done
215s Entering ResolveByKeep
217s 
217s Calculating upgrade...
218s The following packages will be upgraded:
218s   libperl5.40 perl perl-base perl-modules-5.40 python3-dbus
218s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
218s Need to get 10.5 MB of archives.
218s After this operation, 3072 B of additional disk space will be used.
218s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x libperl5.40 s390x 5.40.1-3 [4972 kB]
219s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x perl s390x 5.40.1-3 [262 kB]
219s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x perl-base s390x 5.40.1-3 [1954 kB]
219s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x perl-modules-5.40 all 5.40.1-3 [3217 kB]
219s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x python3-dbus s390x 1.4.0-1 [102 kB]
224s Fetched 10.5 MB in 1s (13.2 MB/s)
234s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 59837 files and directories currently installed.)
234s Preparing to unpack .../libperl5.40_5.40.1-3_s390x.deb ...
234s Unpacking libperl5.40:s390x (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
237s Preparing to unpack .../perl_5.40.1-3_s390x.deb ...
237s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
237s Preparing to unpack .../perl-base_5.40.1-3_s390x.deb ...
237s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
244s Setting up perl-base (5.40.1-3) ...
245s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 59837 files and directories currently installed.)
245s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ...
245s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
251s Preparing to unpack .../python3-dbus_1.4.0-1_s390x.deb ...
251s Unpacking python3-dbus (1.4.0-1) over (1.3.2-5build5) ...
252s Setting up python3-dbus (1.4.0-1) ...
253s Setting up perl-modules-5.40 (5.40.1-3) ...
253s Setting up libperl5.40:s390x (5.40.1-3) ...
253s Setting up perl (5.40.1-3) ...
253s Processing triggers for man-db (2.13.1-1) ...
259s Processing triggers for libc-bin (2.41-6ubuntu1) ...
261s Reading package lists...
261s Building dependency tree...
261s Reading state information...
262s Starting pkgProblemResolver with broken count: 0
262s Starting 2 pkgProblemResolver with broken count: 0
263s Done
263s Solving dependencies...
264s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
271s autopkgtest [11:50:10]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr  6 13:39:00 UTC 2025
271s autopkgtest [11:50:10]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-ape
275s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-cran-ape 5.8-1-1 (dsc) [2114 B]
275s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-cran-ape 5.8-1-1 (tar) [1425 kB]
275s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-cran-ape 5.8-1-1 (diff) [5600 B]
278s gpgv: Signature made Wed Jan 22 08:35:21 2025 UTC
278s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
278s gpgv:                issuer "plessy@debian.org"
278s gpgv: Can't check signature: No public key
278s dpkg-source: warning: cannot verify inline signature for ./r-cran-ape_5.8-1-1.dsc: no acceptable signature found
278s autopkgtest [11:50:17]: testing package r-cran-ape version 5.8-1-1
279s autopkgtest [11:50:18]: build not needed
283s autopkgtest [11:50:22]: test run-unit-test: preparing testbed
285s Reading package lists...
286s Building dependency tree...
286s Reading state information...
288s Starting pkgProblemResolver with broken count: 0
288s Starting 2 pkgProblemResolver with broken count: 0
288s Done
290s The following NEW packages will be installed:
290s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libamd3
290s   libblas3 libcairo2 libcolamd3 libdatrie1 libdeflate0 libfontconfig1
290s   libfreetype6 libgfortran5 libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b
290s   libice6 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 libltdl7 libpango-1.0-0
290s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
290s   libsharpyuv0 libsm6 libsuitesparseconfig7 libtcl8.6 libthai-data libthai0
290s   libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1
290s   libxss1 libxt6t64 littler r-base-core r-cran-ape r-cran-cli r-cran-cpp11
290s   r-cran-digest r-cran-fastmatch r-cran-generics r-cran-glue r-cran-igraph
290s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix
290s   r-cran-nlme r-cran-phangorn r-cran-pkgconfig r-cran-pkgkitten
290s   r-cran-quadprog r-cran-rcpp r-cran-rlang r-cran-vctrs unzip x11-common
290s   xdg-utils zip
291s 0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded.
291s Need to get 66.5 MB of archives.
291s After this operation, 131 MB of additional disk space will be used.
291s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
291s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
291s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
292s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB]
292s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB]
292s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig s390x 2.15.0-2.2ubuntu1 [191 kB]
292s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB]
292s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libsuitesparseconfig7 s390x 1:7.10.1+dfsg-1 [21.3 kB]
292s Get:9 http://ftpmaster.internal/ubuntu questing/universe s390x libamd3 s390x 1:7.10.1+dfsg-1 [43.3 kB]
292s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB]
292s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
292s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
292s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
292s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB]
292s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB]
292s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libcolamd3 s390x 1:7.10.1+dfsg-1 [31.2 kB]
292s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
292s Get:18 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-2 [46.0 kB]
292s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB]
292s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x libltdl7 s390x 2.5.4-4 [43.8 kB]
292s Get:21 http://ftpmaster.internal/ubuntu questing/universe s390x libglpk40 s390x 5.0-1build2 [406 kB]
292s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
292s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
292s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB]
292s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
292s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
292s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
292s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
292s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x libthai-data all 0.1.29-2build1 [158 kB]
292s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
292s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libpango-1.0-0 s390x 1.56.3-1 [254 kB]
292s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libpangoft2-1.0-0 s390x 1.56.3-1 [50.5 kB]
292s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libpangocairo-1.0-0 s390x 1.56.3-1 [28.2 kB]
292s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
292s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
292s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
292s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libsm6 s390x 2:1.2.6-1 [18.3 kB]
293s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
293s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
293s Get:40 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
293s Get:41 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.7.0-3ubuntu1 [219 kB]
293s Get:42 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
293s Get:43 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
293s Get:44 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
293s Get:45 http://ftpmaster.internal/ubuntu questing/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
293s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
293s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
293s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
293s Get:49 http://ftpmaster.internal/ubuntu questing/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
295s Get:50 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
295s Get:51 http://ftpmaster.internal/ubuntu questing/universe s390x littler all 0.3.20-2 [2554 B]
295s Get:52 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
295s Get:53 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-cran-nlme s390x 3.1.168-1 [2315 kB]
295s Get:54 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
295s Get:55 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
295s Get:56 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
295s Get:57 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-ape s390x 5.8-1-1 [2921 kB]
296s Get:58 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
296s Get:59 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB]
296s Get:60 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-fastmatch s390x 1.1-6-1 [37.1 kB]
296s Get:61 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB]
296s Get:62 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
296s Get:63 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
296s Get:64 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
296s Get:65 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
296s Get:66 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
296s Get:67 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
296s Get:68 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
296s Get:69 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-igraph s390x 2.1.4-1 [5311 kB]
297s Get:70 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-quadprog s390x 1.5-8-1build1 [30.8 kB]
297s Get:71 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-phangorn s390x 2.12.1+dfsg-1 [1832 kB]
299s Preconfiguring packages ...
300s Fetched 66.5 MB in 6s (10.8 MB/s)
300s Selecting previously unselected package libfreetype6:s390x.
300s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 59837 files and directories currently installed.)
301s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
301s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
301s Selecting previously unselected package fonts-dejavu-mono.
301s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
301s Unpacking fonts-dejavu-mono (2.37-8) ...
301s Selecting previously unselected package fonts-dejavu-core.
301s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
301s Unpacking fonts-dejavu-core (2.37-8) ...
302s Selecting previously unselected package fontconfig-config.
302s Preparing to unpack .../03-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ...
304s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
305s Selecting previously unselected package libfontconfig1:s390x.
305s Preparing to unpack .../04-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ...
305s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ...
305s Selecting previously unselected package fontconfig.
305s Preparing to unpack .../05-fontconfig_2.15.0-2.2ubuntu1_s390x.deb ...
305s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
305s Selecting previously unselected package libgomp1:s390x.
305s Preparing to unpack .../06-libgomp1_15-20250404-0ubuntu1_s390x.deb ...
305s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ...
305s Selecting previously unselected package libsuitesparseconfig7:s390x.
305s Preparing to unpack .../07-libsuitesparseconfig7_1%3a7.10.1+dfsg-1_s390x.deb ...
305s Unpacking libsuitesparseconfig7:s390x (1:7.10.1+dfsg-1) ...
305s Selecting previously unselected package libamd3:s390x.
305s Preparing to unpack .../08-libamd3_1%3a7.10.1+dfsg-1_s390x.deb ...
305s Unpacking libamd3:s390x (1:7.10.1+dfsg-1) ...
306s Selecting previously unselected package libblas3:s390x.
306s Preparing to unpack .../09-libblas3_3.12.1-2_s390x.deb ...
306s Unpacking libblas3:s390x (3.12.1-2) ...
306s Selecting previously unselected package libpixman-1-0:s390x.
306s Preparing to unpack .../10-libpixman-1-0_0.44.0-3_s390x.deb ...
306s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
306s Selecting previously unselected package libxcb-render0:s390x.
306s Preparing to unpack .../11-libxcb-render0_1.17.0-2_s390x.deb ...
306s Unpacking libxcb-render0:s390x (1.17.0-2) ...
306s Selecting previously unselected package libxcb-shm0:s390x.
306s Preparing to unpack .../12-libxcb-shm0_1.17.0-2_s390x.deb ...
307s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
307s Selecting previously unselected package libxrender1:s390x.
307s Preparing to unpack .../13-libxrender1_1%3a0.9.12-1_s390x.deb ...
307s Unpacking libxrender1:s390x (1:0.9.12-1) ...
307s Selecting previously unselected package libcairo2:s390x.
307s Preparing to unpack .../14-libcairo2_1.18.4-1_s390x.deb ...
307s Unpacking libcairo2:s390x (1.18.4-1) ...
307s Selecting previously unselected package libcolamd3:s390x.
307s Preparing to unpack .../15-libcolamd3_1%3a7.10.1+dfsg-1_s390x.deb ...
307s Unpacking libcolamd3:s390x (1:7.10.1+dfsg-1) ...
307s Selecting previously unselected package libdatrie1:s390x.
307s Preparing to unpack .../16-libdatrie1_0.2.13-3build1_s390x.deb ...
307s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
308s Selecting previously unselected package libdeflate0:s390x.
308s Preparing to unpack .../17-libdeflate0_1.23-2_s390x.deb ...
308s Unpacking libdeflate0:s390x (1.23-2) ...
308s Selecting previously unselected package libgfortran5:s390x.
308s Preparing to unpack .../18-libgfortran5_15-20250404-0ubuntu1_s390x.deb ...
308s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ...
308s Selecting previously unselected package libltdl7:s390x.
308s Preparing to unpack .../19-libltdl7_2.5.4-4_s390x.deb ...
308s Unpacking libltdl7:s390x (2.5.4-4) ...
308s Selecting previously unselected package libglpk40:s390x.
308s Preparing to unpack .../20-libglpk40_5.0-1build2_s390x.deb ...
308s Unpacking libglpk40:s390x (5.0-1build2) ...
308s Selecting previously unselected package libgraphite2-3:s390x.
308s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
308s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
308s Selecting previously unselected package libharfbuzz0b:s390x.
308s Preparing to unpack .../22-libharfbuzz0b_10.2.0-1_s390x.deb ...
308s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
308s Selecting previously unselected package x11-common.
308s Preparing to unpack .../23-x11-common_1%3a7.7+23ubuntu4_all.deb ...
308s Unpacking x11-common (1:7.7+23ubuntu4) ...
308s Selecting previously unselected package libice6:s390x.
308s Preparing to unpack .../24-libice6_2%3a1.1.1-1_s390x.deb ...
308s Unpacking libice6:s390x (2:1.1.1-1) ...
309s Selecting previously unselected package libjpeg-turbo8:s390x.
309s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
309s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
309s Selecting previously unselected package libjpeg8:s390x.
309s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_s390x.deb ...
309s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
309s Selecting previously unselected package liblapack3:s390x.
309s Preparing to unpack .../27-liblapack3_3.12.1-2_s390x.deb ...
309s Unpacking liblapack3:s390x (3.12.1-2) ...
310s Selecting previously unselected package libthai-data.
311s Preparing to unpack .../28-libthai-data_0.1.29-2build1_all.deb ...
311s Unpacking libthai-data (0.1.29-2build1) ...
311s Selecting previously unselected package libthai0:s390x.
311s Preparing to unpack .../29-libthai0_0.1.29-2build1_s390x.deb ...
311s Unpacking libthai0:s390x (0.1.29-2build1) ...
311s Selecting previously unselected package libpango-1.0-0:s390x.
311s Preparing to unpack .../30-libpango-1.0-0_1.56.3-1_s390x.deb ...
311s Unpacking libpango-1.0-0:s390x (1.56.3-1) ...
311s Selecting previously unselected package libpangoft2-1.0-0:s390x.
311s Preparing to unpack .../31-libpangoft2-1.0-0_1.56.3-1_s390x.deb ...
311s Unpacking libpangoft2-1.0-0:s390x (1.56.3-1) ...
311s Selecting previously unselected package libpangocairo-1.0-0:s390x.
311s Preparing to unpack .../32-libpangocairo-1.0-0_1.56.3-1_s390x.deb ...
311s Unpacking libpangocairo-1.0-0:s390x (1.56.3-1) ...
311s Selecting previously unselected package libpaper2:s390x.
312s Preparing to unpack .../33-libpaper2_2.2.5-0.3_s390x.deb ...
312s Unpacking libpaper2:s390x (2.2.5-0.3) ...
312s Selecting previously unselected package libpaper-utils.
312s Preparing to unpack .../34-libpaper-utils_2.2.5-0.3_s390x.deb ...
312s Unpacking libpaper-utils (2.2.5-0.3) ...
312s Selecting previously unselected package libsharpyuv0:s390x.
312s Preparing to unpack .../35-libsharpyuv0_1.5.0-0.1_s390x.deb ...
312s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
312s Selecting previously unselected package libsm6:s390x.
312s Preparing to unpack .../36-libsm6_2%3a1.2.6-1_s390x.deb ...
312s Unpacking libsm6:s390x (2:1.2.6-1) ...
312s Selecting previously unselected package libtcl8.6:s390x.
312s Preparing to unpack .../37-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
312s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
313s Selecting previously unselected package libjbig0:s390x.
313s Preparing to unpack .../38-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
313s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
313s Selecting previously unselected package libwebp7:s390x.
313s Preparing to unpack .../39-libwebp7_1.5.0-0.1_s390x.deb ...
313s Unpacking libwebp7:s390x (1.5.0-0.1) ...
313s Selecting previously unselected package libtiff6:s390x.
313s Preparing to unpack .../40-libtiff6_4.7.0-3ubuntu1_s390x.deb ...
313s Unpacking libtiff6:s390x (4.7.0-3ubuntu1) ...
313s Selecting previously unselected package libxft2:s390x.
313s Preparing to unpack .../41-libxft2_2.3.6-1build1_s390x.deb ...
313s Unpacking libxft2:s390x (2.3.6-1build1) ...
313s Selecting previously unselected package libxss1:s390x.
313s Preparing to unpack .../42-libxss1_1%3a1.2.3-1build3_s390x.deb ...
313s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
313s Selecting previously unselected package libtk8.6:s390x.
313s Preparing to unpack .../43-libtk8.6_8.6.16-1_s390x.deb ...
313s Unpacking libtk8.6:s390x (8.6.16-1) ...
313s Selecting previously unselected package libxt6t64:s390x.
313s Preparing to unpack .../44-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
313s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
313s Selecting previously unselected package zip.
313s Preparing to unpack .../45-zip_3.0-14ubuntu2_s390x.deb ...
313s Unpacking zip (3.0-14ubuntu2) ...
314s Selecting previously unselected package unzip.
314s Preparing to unpack .../46-unzip_6.0-28ubuntu6_s390x.deb ...
314s Unpacking unzip (6.0-28ubuntu6) ...
314s Selecting previously unselected package xdg-utils.
314s Preparing to unpack .../47-xdg-utils_1.2.1-2ubuntu1_all.deb ...
314s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
315s Selecting previously unselected package r-base-core.
315s Preparing to unpack .../48-r-base-core_4.4.3-1_s390x.deb ...
315s Unpacking r-base-core (4.4.3-1) ...
317s Selecting previously unselected package r-cran-littler.
317s Preparing to unpack .../49-r-cran-littler_0.3.20-2_s390x.deb ...
317s Unpacking r-cran-littler (0.3.20-2) ...
317s Selecting previously unselected package littler.
317s Preparing to unpack .../50-littler_0.3.20-2_all.deb ...
317s Unpacking littler (0.3.20-2) ...
318s Selecting previously unselected package r-cran-lattice.
318s Preparing to unpack .../51-r-cran-lattice_0.22-6-1_s390x.deb ...
318s Unpacking r-cran-lattice (0.22-6-1) ...
318s Selecting previously unselected package r-cran-nlme.
318s Preparing to unpack .../52-r-cran-nlme_3.1.168-1_s390x.deb ...
318s Unpacking r-cran-nlme (3.1.168-1) ...
318s Selecting previously unselected package r-cran-pkgkitten.
318s Preparing to unpack .../53-r-cran-pkgkitten_0.2.4-1_all.deb ...
318s Unpacking r-cran-pkgkitten (0.2.4-1) ...
318s Selecting previously unselected package r-cran-rcpp.
318s Preparing to unpack .../54-r-cran-rcpp_1.0.14-1_s390x.deb ...
318s Unpacking r-cran-rcpp (1.0.14-1) ...
319s Selecting previously unselected package r-cran-digest.
319s Preparing to unpack .../55-r-cran-digest_0.6.37-1_s390x.deb ...
319s Unpacking r-cran-digest (0.6.37-1) ...
319s Selecting previously unselected package r-cran-ape.
319s Preparing to unpack .../56-r-cran-ape_5.8-1-1_s390x.deb ...
319s Unpacking r-cran-ape (5.8-1-1) ...
320s Selecting previously unselected package r-cran-cli.
320s Preparing to unpack .../57-r-cran-cli_3.6.4-1_s390x.deb ...
320s Unpacking r-cran-cli (3.6.4-1) ...
321s Selecting previously unselected package r-cran-cpp11.
321s Preparing to unpack .../58-r-cran-cpp11_0.5.2-1_all.deb ...
321s Unpacking r-cran-cpp11 (0.5.2-1) ...
321s Selecting previously unselected package r-cran-fastmatch.
322s Preparing to unpack .../59-r-cran-fastmatch_1.1-6-1_s390x.deb ...
322s Unpacking r-cran-fastmatch (1.1-6-1) ...
322s Selecting previously unselected package r-cran-generics.
322s Preparing to unpack .../60-r-cran-generics_0.1.3-1_all.deb ...
322s Unpacking r-cran-generics (0.1.3-1) ...
322s Selecting previously unselected package r-cran-glue.
322s Preparing to unpack .../61-r-cran-glue_1.8.0-1_s390x.deb ...
322s Unpacking r-cran-glue (1.8.0-1) ...
322s Selecting previously unselected package r-cran-rlang.
322s Preparing to unpack .../62-r-cran-rlang_1.1.5-1_s390x.deb ...
322s Unpacking r-cran-rlang (1.1.5-1) ...
322s Selecting previously unselected package r-cran-lifecycle.
322s Preparing to unpack .../63-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
322s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
322s Selecting previously unselected package r-cran-magrittr.
322s Preparing to unpack .../64-r-cran-magrittr_2.0.3-1_s390x.deb ...
322s Unpacking r-cran-magrittr (2.0.3-1) ...
322s Selecting previously unselected package r-cran-matrix.
322s Preparing to unpack .../65-r-cran-matrix_1.7-3-1_s390x.deb ...
322s Unpacking r-cran-matrix (1.7-3-1) ...
323s Selecting previously unselected package r-cran-pkgconfig.
323s Preparing to unpack .../66-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
323s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
324s Selecting previously unselected package r-cran-vctrs.
324s Preparing to unpack .../67-r-cran-vctrs_0.6.5-1_s390x.deb ...
324s Unpacking r-cran-vctrs (0.6.5-1) ...
324s Selecting previously unselected package r-cran-igraph.
324s Preparing to unpack .../68-r-cran-igraph_2.1.4-1_s390x.deb ...
324s Unpacking r-cran-igraph (2.1.4-1) ...
324s Selecting previously unselected package r-cran-quadprog.
324s Preparing to unpack .../69-r-cran-quadprog_1.5-8-1build1_s390x.deb ...
324s Unpacking r-cran-quadprog (1.5-8-1build1) ...
324s Selecting previously unselected package r-cran-phangorn.
324s Preparing to unpack .../70-r-cran-phangorn_2.12.1+dfsg-1_s390x.deb ...
324s Unpacking r-cran-phangorn (2.12.1+dfsg-1) ...
325s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
325s Setting up libpixman-1-0:s390x (0.44.0-3) ...
325s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
325s Setting up libxrender1:s390x (1:0.9.12-1) ...
325s Setting up libdatrie1:s390x (0.2.13-3build1) ...
325s Setting up libxcb-render0:s390x (1.17.0-2) ...
325s Setting up unzip (6.0-28ubuntu6) ...
325s Setting up x11-common (1:7.7+23ubuntu4) ...
328s Setting up libdeflate0:s390x (1.23-2) ...
328s Setting up libxcb-shm0:s390x (1.17.0-2) ...
328s Setting up libgomp1:s390x (15-20250404-0ubuntu1) ...
328s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
328s Setting up zip (3.0-14ubuntu2) ...
328s Setting up libblas3:s390x (3.12.1-2) ...
329s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
329s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
329s Setting up fonts-dejavu-mono (2.37-8) ...
329s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
329s Setting up fonts-dejavu-core (2.37-8) ...
329s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
329s Setting up libltdl7:s390x (2.5.4-4) ...
329s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ...
329s Setting up libwebp7:s390x (1.5.0-0.1) ...
329s Setting up libsuitesparseconfig7:s390x (1:7.10.1+dfsg-1) ...
329s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
329s Setting up libthai-data (0.1.29-2build1) ...
329s Setting up libxss1:s390x (1:1.2.3-1build3) ...
329s Setting up libpaper2:s390x (2.2.5-0.3) ...
329s Setting up xdg-utils (1.2.1-2ubuntu1) ...
329s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
329s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
329s Setting up libice6:s390x (2:1.1.1-1) ...
329s Setting up liblapack3:s390x (3.12.1-2) ...
329s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
329s Setting up libamd3:s390x (1:7.10.1+dfsg-1) ...
329s Setting up libcolamd3:s390x (1:7.10.1+dfsg-1) ...
329s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ...
329s Setting up libpaper-utils (2.2.5-0.3) ...
329s Setting up libthai0:s390x (0.1.29-2build1) ...
329s Setting up libglpk40:s390x (5.0-1build2) ...
329s Setting up libtiff6:s390x (4.7.0-3ubuntu1) ...
329s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ...
329s Setting up libsm6:s390x (2:1.2.6-1) ...
329s Setting up fontconfig (2.15.0-2.2ubuntu1) ...
332s Regenerating fonts cache... done.
332s Setting up libxft2:s390x (2.3.6-1build1) ...
332s Setting up libtk8.6:s390x (8.6.16-1) ...
332s Setting up libpango-1.0-0:s390x (1.56.3-1) ...
332s Setting up libcairo2:s390x (1.18.4-1) ...
332s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
332s Setting up libpangoft2-1.0-0:s390x (1.56.3-1) ...
332s Setting up libpangocairo-1.0-0:s390x (1.56.3-1) ...
332s Setting up r-base-core (4.4.3-1) ...
334s Creating config file /etc/R/Renviron with new version
337s Setting up r-cran-fastmatch (1.1-6-1) ...
337s Setting up r-cran-lattice (0.22-6-1) ...
337s Setting up r-cran-nlme (3.1.168-1) ...
337s Setting up r-cran-pkgkitten (0.2.4-1) ...
337s Setting up r-cran-magrittr (2.0.3-1) ...
337s Setting up r-cran-quadprog (1.5-8-1build1) ...
337s Setting up r-cran-littler (0.3.20-2) ...
337s Setting up r-cran-rcpp (1.0.14-1) ...
337s Setting up r-cran-rlang (1.1.5-1) ...
337s Setting up littler (0.3.20-2) ...
337s Setting up r-cran-generics (0.1.3-1) ...
337s Setting up r-cran-digest (0.6.37-1) ...
337s Setting up r-cran-ape (5.8-1-1) ...
337s Setting up r-cran-glue (1.8.0-1) ...
337s Setting up r-cran-cli (3.6.4-1) ...
337s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
337s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
337s Setting up r-cran-cpp11 (0.5.2-1) ...
337s Setting up r-cran-matrix (1.7-3-1) ...
337s Setting up r-cran-vctrs (0.6.5-1) ...
337s Setting up r-cran-igraph (2.1.4-1) ...
337s Setting up r-cran-phangorn (2.12.1+dfsg-1) ...
337s Processing triggers for libc-bin (2.41-6ubuntu1) ...
339s Processing triggers for man-db (2.13.1-1) ...
357s Processing triggers for install-info (7.1.1-1) ...
364s autopkgtest [11:51:43]: test run-unit-test: [-----------------------
365s 
365s R version 4.4.3 (2025-02-28) -- "Trophy Case"
365s Copyright (C) 2025 The R Foundation for Statistical Computing
365s Platform: s390x-ibm-linux-gnu
365s 
365s R is free software and comes with ABSOLUTELY NO WARRANTY.
365s You are welcome to redistribute it under certain conditions.
365s Type 'license()' or 'licence()' for distribution details.
365s 
365s R is a collaborative project with many contributors.
365s Type 'contributors()' for more information and
365s 'citation()' on how to cite R or R packages in publications.
365s 
365s Type 'demo()' for some demos, 'help()' for on-line help, or
365s 'help.start()' for an HTML browser interface to help.
365s Type 'q()' to quit R.
365s 
366s >   Stangle("DrawingPhylogenies.Rnw")
366s Writing to file DrawingPhylogenies.R 
367s >   source("DrawingPhylogenies.R", echo=TRUE)
367s 
367s > options(width = 80, prompt = "> ")
367s 
367s > library(ape)
367s Error: package or namespace load failed for 'ape' in dyn.load(file, DLLpath = DLLpath, ...):
367s  unable to load shared object '/usr/lib/R/library/nlme/libs/nlme.so':
367s   /usr/lib/R/library/nlme/libs/nlme.so: undefined symbol: R_chk_memcpy
367s Execution halted
367s autopkgtest [11:51:46]: test run-unit-test: -----------------------]
369s autopkgtest [11:51:48]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
369s run-unit-test        FAIL non-zero exit status 1
370s autopkgtest [11:51:49]: test pkg-r-autopkgtest: preparing testbed
370s Reading package lists...
372s Building dependency tree...
372s Reading state information...
372s Starting pkgProblemResolver with broken count: 0
373s Starting 2 pkgProblemResolver with broken count: 0
373s Done
375s The following NEW packages will be installed:
375s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
375s   dctrl-tools g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
375s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
375s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
375s   libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev
375s   libgfortran-14-dev libicu-dev libisl23 libitm1 libjpeg-dev
375s   libjpeg-turbo8-dev libjpeg8-dev libjs-jquery liblapack-dev liblzma-dev
375s   libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev
375s   libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev
375s   libtirpc-dev libubsan1 node-html5shiv pkg-r-autopkgtest pkgconf pkgconf-bin
375s   r-base-dev r-cran-expm r-cran-gee r-cran-xml2 zlib1g-dev
375s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded.
375s Need to get 83.3 MB of archives.
375s After this operation, 281 MB of additional disk space will be used.
375s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x libisl23 s390x 0.27-1 [704 kB]
376s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
376s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [9572 kB]
376s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x cpp-14 s390x 14.2.0-19ubuntu2 [1024 B]
376s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
376s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
376s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x libcc1-0 s390x 15-20250404-0ubuntu1 [49.6 kB]
376s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libitm1 s390x 15-20250404-0ubuntu1 [31.2 kB]
376s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x libasan8 s390x 15-20250404-0ubuntu1 [2966 kB]
376s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libubsan1 s390x 15-20250404-0ubuntu1 [1210 kB]
376s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x libgcc-14-dev s390x 14.2.0-19ubuntu2 [1037 kB]
376s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [18.7 MB]
377s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x gcc-14 s390x 14.2.0-19ubuntu2 [529 kB]
377s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
377s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
377s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libstdc++-14-dev s390x 14.2.0-19ubuntu2 [2614 kB]
377s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [11.0 MB]
378s Get:18 http://ftpmaster.internal/ubuntu questing/main s390x g++-14 s390x 14.2.0-19ubuntu2 [23.0 kB]
378s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
378s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
378s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x build-essential s390x 12.12ubuntu1 [5090 B]
378s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
378s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran-14-dev s390x 14.2.0-19ubuntu2 [653 kB]
378s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [10.3 MB]
378s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-14 s390x 14.2.0-19ubuntu2 [14.2 kB]
378s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
378s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
378s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
378s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
378s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
378s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate-dev s390x 1.23-2 [51.9 kB]
378s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
379s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
379s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
379s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
379s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
379s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
379s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
379s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
379s Get:40 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
379s Get:41 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
379s Get:42 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
379s Get:43 http://ftpmaster.internal/ubuntu questing/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
379s Get:44 http://ftpmaster.internal/ubuntu questing/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
379s Get:45 http://ftpmaster.internal/ubuntu questing/main s390x libpng-dev s390x 1.6.47-1.1 [278 kB]
379s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x libreadline-dev s390x 8.2-6 [187 kB]
379s Get:47 http://ftpmaster.internal/ubuntu questing/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
379s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x liblzma-dev s390x 5.6.4-1ubuntu1 [184 kB]
379s Get:49 http://ftpmaster.internal/ubuntu questing/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
379s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
379s Get:51 http://ftpmaster.internal/ubuntu questing/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
379s Get:52 http://ftpmaster.internal/ubuntu questing/universe s390x r-base-dev all 4.4.3-1 [4176 B]
379s Get:53 http://ftpmaster.internal/ubuntu questing/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
379s Get:54 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-expm s390x 1.0-0-1 [229 kB]
379s Get:55 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-gee s390x 4.13-29-1 [78.1 kB]
379s Get:56 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-xml2 s390x 1.3.8-1 [327 kB]
381s Fetched 83.3 MB in 4s (21.8 MB/s)
381s Selecting previously unselected package libisl23:s390x.
381s (Reading database ... 
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381s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ...
381s Unpacking libisl23:s390x (0.27-1) ...
381s Selecting previously unselected package libmpc3:s390x.
382s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ...
382s Unpacking libmpc3:s390x (1.3.1-1build2) ...
382s Selecting previously unselected package cpp-14-s390x-linux-gnu.
382s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ...
382s Unpacking cpp-14-s390x-linux-gnu (14.2.0-19ubuntu2) ...
383s Selecting previously unselected package cpp-14.
383s Preparing to unpack .../03-cpp-14_14.2.0-19ubuntu2_s390x.deb ...
383s Unpacking cpp-14 (14.2.0-19ubuntu2) ...
383s Selecting previously unselected package cpp-s390x-linux-gnu.
383s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
383s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
383s Selecting previously unselected package cpp.
383s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
383s Unpacking cpp (4:14.2.0-1ubuntu1) ...
383s Selecting previously unselected package libcc1-0:s390x.
384s Preparing to unpack .../06-libcc1-0_15-20250404-0ubuntu1_s390x.deb ...
384s Unpacking libcc1-0:s390x (15-20250404-0ubuntu1) ...
384s Selecting previously unselected package libitm1:s390x.
384s Preparing to unpack .../07-libitm1_15-20250404-0ubuntu1_s390x.deb ...
384s Unpacking libitm1:s390x (15-20250404-0ubuntu1) ...
384s Selecting previously unselected package libasan8:s390x.
384s Preparing to unpack .../08-libasan8_15-20250404-0ubuntu1_s390x.deb ...
384s Unpacking libasan8:s390x (15-20250404-0ubuntu1) ...
385s Selecting previously unselected package libubsan1:s390x.
385s Preparing to unpack .../09-libubsan1_15-20250404-0ubuntu1_s390x.deb ...
385s Unpacking libubsan1:s390x (15-20250404-0ubuntu1) ...
385s Selecting previously unselected package libgcc-14-dev:s390x.
385s Preparing to unpack .../10-libgcc-14-dev_14.2.0-19ubuntu2_s390x.deb ...
385s Unpacking libgcc-14-dev:s390x (14.2.0-19ubuntu2) ...
385s Selecting previously unselected package gcc-14-s390x-linux-gnu.
385s Preparing to unpack .../11-gcc-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ...
385s Unpacking gcc-14-s390x-linux-gnu (14.2.0-19ubuntu2) ...
391s Selecting previously unselected package gcc-14.
391s Preparing to unpack .../12-gcc-14_14.2.0-19ubuntu2_s390x.deb ...
391s Unpacking gcc-14 (14.2.0-19ubuntu2) ...
391s Selecting previously unselected package gcc-s390x-linux-gnu.
391s Preparing to unpack .../13-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
391s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
391s Selecting previously unselected package gcc.
391s Preparing to unpack .../14-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
391s Unpacking gcc (4:14.2.0-1ubuntu1) ...
391s Selecting previously unselected package libstdc++-14-dev:s390x.
391s Preparing to unpack .../15-libstdc++-14-dev_14.2.0-19ubuntu2_s390x.deb ...
391s Unpacking libstdc++-14-dev:s390x (14.2.0-19ubuntu2) ...
393s Selecting previously unselected package g++-14-s390x-linux-gnu.
393s Preparing to unpack .../16-g++-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ...
393s Unpacking g++-14-s390x-linux-gnu (14.2.0-19ubuntu2) ...
396s Selecting previously unselected package g++-14.
396s Preparing to unpack .../17-g++-14_14.2.0-19ubuntu2_s390x.deb ...
396s Unpacking g++-14 (14.2.0-19ubuntu2) ...
396s Selecting previously unselected package g++-s390x-linux-gnu.
396s Preparing to unpack .../18-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
396s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
396s Selecting previously unselected package g++.
396s Preparing to unpack .../19-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
396s Unpacking g++ (4:14.2.0-1ubuntu1) ...
396s Selecting previously unselected package build-essential.
396s Preparing to unpack .../20-build-essential_12.12ubuntu1_s390x.deb ...
396s Unpacking build-essential (12.12ubuntu1) ...
396s Selecting previously unselected package dctrl-tools.
396s Preparing to unpack .../21-dctrl-tools_2.24-3build3_s390x.deb ...
396s Unpacking dctrl-tools (2.24-3build3) ...
396s Selecting previously unselected package libgfortran-14-dev:s390x.
396s Preparing to unpack .../22-libgfortran-14-dev_14.2.0-19ubuntu2_s390x.deb ...
396s Unpacking libgfortran-14-dev:s390x (14.2.0-19ubuntu2) ...
396s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
396s Preparing to unpack .../23-gfortran-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ...
396s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-19ubuntu2) ...
398s Selecting previously unselected package gfortran-14.
398s Preparing to unpack .../24-gfortran-14_14.2.0-19ubuntu2_s390x.deb ...
398s Unpacking gfortran-14 (14.2.0-19ubuntu2) ...
398s Selecting previously unselected package gfortran-s390x-linux-gnu.
399s Preparing to unpack .../25-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
399s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
399s Selecting previously unselected package gfortran.
399s Preparing to unpack .../26-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
399s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
399s Selecting previously unselected package icu-devtools.
399s Preparing to unpack .../27-icu-devtools_76.1-1ubuntu2_s390x.deb ...
399s Unpacking icu-devtools (76.1-1ubuntu2) ...
399s Selecting previously unselected package libblas-dev:s390x.
399s Preparing to unpack .../28-libblas-dev_3.12.1-2_s390x.deb ...
399s Unpacking libblas-dev:s390x (3.12.1-2) ...
399s Selecting previously unselected package libbz2-dev:s390x.
399s Preparing to unpack .../29-libbz2-dev_1.0.8-6_s390x.deb ...
399s Unpacking libbz2-dev:s390x (1.0.8-6) ...
399s Selecting previously unselected package libdeflate-dev:s390x.
399s Preparing to unpack .../30-libdeflate-dev_1.23-2_s390x.deb ...
399s Unpacking libdeflate-dev:s390x (1.23-2) ...
399s Selecting previously unselected package libicu-dev:s390x.
399s Preparing to unpack .../31-libicu-dev_76.1-1ubuntu2_s390x.deb ...
399s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
403s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
403s Preparing to unpack .../32-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
403s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
404s Selecting previously unselected package libjpeg8-dev:s390x.
404s Preparing to unpack .../33-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
404s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
404s Selecting previously unselected package libjpeg-dev:s390x.
404s Preparing to unpack .../34-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
404s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
404s Selecting previously unselected package libjs-jquery.
404s Preparing to unpack .../35-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
404s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
404s Selecting previously unselected package liblapack-dev:s390x.
404s Preparing to unpack .../36-liblapack-dev_3.12.1-2_s390x.deb ...
404s Unpacking liblapack-dev:s390x (3.12.1-2) ...
407s Selecting previously unselected package libncurses-dev:s390x.
407s Preparing to unpack .../37-libncurses-dev_6.5+20250216-2_s390x.deb ...
407s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
407s Selecting previously unselected package libpcre2-16-0:s390x.
407s Preparing to unpack .../38-libpcre2-16-0_10.45-1_s390x.deb ...
407s Unpacking libpcre2-16-0:s390x (10.45-1) ...
407s Selecting previously unselected package libpcre2-32-0:s390x.
407s Preparing to unpack .../39-libpcre2-32-0_10.45-1_s390x.deb ...
407s Unpacking libpcre2-32-0:s390x (10.45-1) ...
407s Selecting previously unselected package libpcre2-posix3:s390x.
407s Preparing to unpack .../40-libpcre2-posix3_10.45-1_s390x.deb ...
407s Unpacking libpcre2-posix3:s390x (10.45-1) ...
407s Selecting previously unselected package libpcre2-dev:s390x.
408s Preparing to unpack .../41-libpcre2-dev_10.45-1_s390x.deb ...
408s Unpacking libpcre2-dev:s390x (10.45-1) ...
408s Selecting previously unselected package libpkgconf3:s390x.
408s Preparing to unpack .../42-libpkgconf3_1.8.1-4_s390x.deb ...
408s Unpacking libpkgconf3:s390x (1.8.1-4) ...
408s Selecting previously unselected package zlib1g-dev:s390x.
408s Preparing to unpack .../43-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
408s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
408s Selecting previously unselected package libpng-dev:s390x.
408s Preparing to unpack .../44-libpng-dev_1.6.47-1.1_s390x.deb ...
408s Unpacking libpng-dev:s390x (1.6.47-1.1) ...
409s Selecting previously unselected package libreadline-dev:s390x.
409s Preparing to unpack .../45-libreadline-dev_8.2-6_s390x.deb ...
409s Unpacking libreadline-dev:s390x (8.2-6) ...
409s Selecting previously unselected package node-html5shiv.
409s Preparing to unpack .../46-node-html5shiv_3.7.3+dfsg-5_all.deb ...
409s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
409s Selecting previously unselected package liblzma-dev:s390x.
409s Preparing to unpack .../47-liblzma-dev_5.6.4-1ubuntu1_s390x.deb ...
409s Unpacking liblzma-dev:s390x (5.6.4-1ubuntu1) ...
409s Selecting previously unselected package pkgconf-bin.
409s Preparing to unpack .../48-pkgconf-bin_1.8.1-4_s390x.deb ...
409s Unpacking pkgconf-bin (1.8.1-4) ...
409s Selecting previously unselected package pkgconf:s390x.
409s Preparing to unpack .../49-pkgconf_1.8.1-4_s390x.deb ...
409s Unpacking pkgconf:s390x (1.8.1-4) ...
409s Selecting previously unselected package libtirpc-dev:s390x.
409s Preparing to unpack .../50-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
409s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
409s Selecting previously unselected package r-base-dev.
409s Preparing to unpack .../51-r-base-dev_4.4.3-1_all.deb ...
409s Unpacking r-base-dev (4.4.3-1) ...
409s Selecting previously unselected package pkg-r-autopkgtest.
409s Preparing to unpack .../52-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
409s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
409s Selecting previously unselected package r-cran-expm.
409s Preparing to unpack .../53-r-cran-expm_1.0-0-1_s390x.deb ...
409s Unpacking r-cran-expm (1.0-0-1) ...
409s Selecting previously unselected package r-cran-gee.
409s Preparing to unpack .../54-r-cran-gee_4.13-29-1_s390x.deb ...
409s Unpacking r-cran-gee (4.13-29-1) ...
409s Selecting previously unselected package r-cran-xml2.
409s Preparing to unpack .../55-r-cran-xml2_1.3.8-1_s390x.deb ...
409s Unpacking r-cran-xml2 (1.3.8-1) ...
410s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
410s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
410s Setting up node-html5shiv (3.7.3+dfsg-5) ...
410s Setting up r-cran-expm (1.0-0-1) ...
410s Setting up libreadline-dev:s390x (8.2-6) ...
410s Setting up libpcre2-16-0:s390x (10.45-1) ...
410s Setting up libpcre2-32-0:s390x (10.45-1) ...
410s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
410s Setting up libpkgconf3:s390x (1.8.1-4) ...
410s Setting up libmpc3:s390x (1.3.1-1build2) ...
410s Setting up icu-devtools (76.1-1ubuntu2) ...
410s Setting up pkgconf-bin (1.8.1-4) ...
410s Setting up liblzma-dev:s390x (5.6.4-1ubuntu1) ...
410s Setting up libubsan1:s390x (15-20250404-0ubuntu1) ...
410s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
410s Setting up libpcre2-posix3:s390x (10.45-1) ...
410s Setting up libasan8:s390x (15-20250404-0ubuntu1) ...
410s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
410s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
410s Setting up r-cran-gee (4.13-29-1) ...
410s Setting up libisl23:s390x (0.27-1) ...
410s Setting up libdeflate-dev:s390x (1.23-2) ...
410s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
410s Setting up libcc1-0:s390x (15-20250404-0ubuntu1) ...
410s Setting up libblas-dev:s390x (3.12.1-2) ...
410s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
410s Setting up dctrl-tools (2.24-3build3) ...
410s Setting up libitm1:s390x (15-20250404-0ubuntu1) ...
410s Setting up libbz2-dev:s390x (1.0.8-6) ...
410s Setting up libpcre2-dev:s390x (10.45-1) ...
410s Setting up r-cran-xml2 (1.3.8-1) ...
410s Setting up libpng-dev:s390x (1.6.47-1.1) ...
410s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
410s Setting up pkgconf:s390x (1.8.1-4) ...
410s Setting up liblapack-dev:s390x (3.12.1-2) ...
410s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
410s Setting up cpp-14-s390x-linux-gnu (14.2.0-19ubuntu2) ...
410s Setting up cpp-14 (14.2.0-19ubuntu2) ...
410s Setting up libgcc-14-dev:s390x (14.2.0-19ubuntu2) ...
410s Setting up libstdc++-14-dev:s390x (14.2.0-19ubuntu2) ...
410s Setting up libgfortran-14-dev:s390x (14.2.0-19ubuntu2) ...
410s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
410s Setting up gcc-14-s390x-linux-gnu (14.2.0-19ubuntu2) ...
410s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
410s Setting up g++-14-s390x-linux-gnu (14.2.0-19ubuntu2) ...
410s Setting up cpp (4:14.2.0-1ubuntu1) ...
410s Setting up gfortran-14-s390x-linux-gnu (14.2.0-19ubuntu2) ...
410s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
410s Setting up gcc-14 (14.2.0-19ubuntu2) ...
410s Setting up g++-14 (14.2.0-19ubuntu2) ...
410s Setting up gfortran-14 (14.2.0-19ubuntu2) ...
410s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
410s Setting up gcc (4:14.2.0-1ubuntu1) ...
410s Setting up g++ (4:14.2.0-1ubuntu1) ...
410s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
410s Setting up build-essential (12.12ubuntu1) ...
410s Setting up gfortran (4:14.2.0-1ubuntu1) ...
410s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
410s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
410s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
410s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
410s Setting up r-base-dev (4.4.3-1) ...
410s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
410s Processing triggers for libc-bin (2.41-6ubuntu1) ...
411s Processing triggers for man-db (2.13.1-1) ...
419s Processing triggers for install-info (7.1.1-1) ...
422s autopkgtest [11:52:41]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
422s autopkgtest [11:52:41]: test pkg-r-autopkgtest: [-----------------------
422s Test: Try to load the R library ape
422s 
422s R version 4.4.3 (2025-02-28) -- "Trophy Case"
422s Copyright (C) 2025 The R Foundation for Statistical Computing
422s Platform: s390x-ibm-linux-gnu
422s 
422s R is free software and comes with ABSOLUTELY NO WARRANTY.
422s You are welcome to redistribute it under certain conditions.
422s Type 'license()' or 'licence()' for distribution details.
422s 
422s R is a collaborative project with many contributors.
422s Type 'contributors()' for more information and
422s 'citation()' on how to cite R or R packages in publications.
422s 
422s Type 'demo()' for some demos, 'help()' for on-line help, or
422s 'help.start()' for an HTML browser interface to help.
422s Type 'q()' to quit R.
422s 
423s > library('ape')
423s Error: package or namespace load failed for ‘ape’ in dyn.load(file, DLLpath = DLLpath, ...):
423s  unable to load shared object '/usr/lib/R/library/nlme/libs/nlme.so':
423s   /usr/lib/R/library/nlme/libs/nlme.so: undefined symbol: R_chk_memcpy
423s Execution halted
423s autopkgtest [11:52:42]: test pkg-r-autopkgtest: -----------------------]
424s autopkgtest [11:52:43]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
424s pkg-r-autopkgtest    FAIL non-zero exit status 1
424s autopkgtest [11:52:43]: @@@@@@@@@@@@@@@@@@@@ summary
424s run-unit-test        FAIL non-zero exit status 1
424s pkg-r-autopkgtest    FAIL non-zero exit status 1
440s nova [W] Using flock in prodstack7-s390x
440s Creating nova instance adt-questing-s390x-r-cran-ape-20250506-114539-juju-7f2275-prod-proposed-migration-environment-20-d1ad6360-1e09-4112-8d70-16b87d62f0c6 from image adt/ubuntu-questing-s390x-server-20250506.img (UUID fef1f145-d219-47e4-a2ed-77b44eac0376)...
440s nova [W] Timed out waiting for b00ae45c-842b-4707-9793-0893ac0426ce to get deleted.