0s autopkgtest [21:54:57]: starting date and time: 2025-05-02 21:54:57+0000 0s autopkgtest [21:54:57]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [21:54:57]: host juju-7f2275-prod-proposed-migration-environment-21; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ajwgvjpv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-rtracklayer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-21@bos03-s390x-2.secgroup --name adt-questing-s390x-r-bioc-rtracklayer-20250502-215457-juju-7f2275-prod-proposed-migration-environment-21-aea12721-8518-4c67-afda-f15491898f97 --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-21 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 62s autopkgtest [21:55:59]: testbed dpkg architecture: s390x 62s autopkgtest [21:55:59]: testbed apt version: 3.0.0 63s autopkgtest [21:56:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s autopkgtest [21:56:00]: testbed release detected to be: None 63s autopkgtest [21:56:00]: updating testbed package index (apt update) 64s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 64s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 64s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 64s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 64s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1968 kB] 65s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [167 kB] 65s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.1 kB] 65s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [207 kB] 65s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1307 kB] 65s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [8572 B] 65s Fetched 3811 kB in 1s (3041 kB/s) 66s Reading package lists... 66s autopkgtest [21:56:03]: upgrading testbed (apt dist-upgrade and autopurge) 66s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 67s Entering ResolveByKeep 67s 67s Calculating upgrade... 68s The following packages will be upgraded: 68s fwupd htop libftdi1-2 libfwupd3 libnpth0t64 libsensors-config libsensors5 68s liburcu8t64 nano usb.ids 68s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 2536 kB of archives. 68s After this operation, 3749 kB disk space will be freed. 68s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x libnpth0t64 s390x 1.8-3 [8778 B] 68s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x libsensors-config all 1:3.6.2-2 [6756 B] 68s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x libsensors5 s390x 1:3.6.2-2 [29.2 kB] 68s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x liburcu8t64 s390x 0.15.2-2 [66.3 kB] 68s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x nano s390x 8.4-1 [299 kB] 68s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x usb.ids all 2025.04.01-1 [223 kB] 68s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x fwupd s390x 2.0.8-3 [1548 kB] 68s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libfwupd3 s390x 2.0.8-3 [135 kB] 68s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x htop s390x 3.4.1-4 [189 kB] 68s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libftdi1-2 s390x 1.5-10 [31.4 kB] 69s Fetched 2536 kB in 1s (3402 kB/s) 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 71s Preparing to unpack .../libnpth0t64_1.8-3_s390x.deb ... 71s Unpacking libnpth0t64:s390x (1.8-3) over (1.8-2) ... 71s Setting up libnpth0t64:s390x (1.8-3) ... 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 71s Preparing to unpack .../0-libsensors-config_1%3a3.6.2-2_all.deb ... 71s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 71s Preparing to unpack .../1-libsensors5_1%3a3.6.2-2_s390x.deb ... 71s Unpacking libsensors5:s390x (1:3.6.2-2) over (1:3.6.0-10) ... 71s Preparing to unpack .../2-liburcu8t64_0.15.2-2_s390x.deb ... 71s Unpacking liburcu8t64:s390x (0.15.2-2) over (0.15.1-1) ... 71s Preparing to unpack .../3-nano_8.4-1_s390x.deb ... 71s Unpacking nano (8.4-1) over (8.3-1) ... 71s Preparing to unpack .../4-usb.ids_2025.04.01-1_all.deb ... 71s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 71s Preparing to unpack .../5-fwupd_2.0.8-3_s390x.deb ... 71s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 71s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 72s Preparing to unpack .../6-libfwupd3_2.0.8-3_s390x.deb ... 72s Unpacking libfwupd3:s390x (2.0.8-3) over (2.0.7-1) ... 72s Preparing to unpack .../7-htop_3.4.1-4_s390x.deb ... 72s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 72s Preparing to unpack .../8-libftdi1-2_1.5-10_s390x.deb ... 72s Unpacking libftdi1-2:s390x (1.5-10) over (1.5-8build1) ... 72s Setting up liburcu8t64:s390x (0.15.2-2) ... 72s Setting up htop (3.4.1-4) ... 72s Setting up libsensors-config (1:3.6.2-2) ... 72s Installing new version of config file /etc/sensors3.conf ... 72s Setting up libfwupd3:s390x (2.0.8-3) ... 72s Setting up libftdi1-2:s390x (1.5-10) ... 72s Setting up usb.ids (2025.04.01-1) ... 72s Setting up libsensors5:s390x (1:3.6.2-2) ... 72s Setting up nano (8.4-1) ... 72s Installing new version of config file /etc/nanorc ... 72s Setting up fwupd (2.0.8-3) ... 72s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 72s fwupd.service is a disabled or a static unit not running, not starting it. 72s Processing triggers for man-db (2.13.0-1) ... 75s Processing triggers for dbus (1.16.2-2ubuntu1) ... 75s Processing triggers for install-info (7.1.1-1) ... 75s Processing triggers for libc-bin (2.41-6ubuntu1) ... 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Starting pkgProblemResolver with broken count: 0 75s Starting 2 pkgProblemResolver with broken count: 0 75s Done 75s Solving dependencies... 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s autopkgtest [21:56:13]: rebooting testbed after setup commands that affected boot 110s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 117s autopkgtest [21:56:54]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr 6 13:39:00 UTC 2025 119s autopkgtest [21:56:56]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rtracklayer 122s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-rtracklayer 1.66.0-2 (dsc) [2459 B] 122s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-rtracklayer 1.66.0-2 (tar) [4113 kB] 122s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-rtracklayer 1.66.0-2 (diff) [27.5 kB] 123s gpgv: Signature made Mon Jan 13 14:23:45 2025 UTC 123s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 123s gpgv: issuer "crusoe@debian.org" 123s gpgv: Can't check signature: No public key 123s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rtracklayer_1.66.0-2.dsc: no acceptable signature found 123s autopkgtest [21:57:00]: testing package r-bioc-rtracklayer version 1.66.0-2 123s autopkgtest [21:57:00]: build not needed 125s autopkgtest [21:57:02]: test pkg-r-autopkgtest: preparing testbed 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s Starting pkgProblemResolver with broken count: 20 125s Starting 2 pkgProblemResolver with broken count: 20 125s Investigating (0) r-bioc-genomeinfodb:s390x < none -> 1.42.3+dfsg-1 @un puN Ib > 125s Broken r-bioc-genomeinfodb:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.13.12) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomeinfodb:s390x 23 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomeinfodb:s390x 23 125s Investigating (0) r-bioc-xvector:s390x < none -> 0.46.0-2 @un puN Ib > 125s Broken r-bioc-xvector:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.23.9) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-xvector:s390x 22 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-xvector:s390x 22 125s Investigating (0) r-bioc-biostrings:s390x < none -> 2.74.1+dfsg-2 @un puN Ib > 125s Broken r-bioc-biostrings:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.31.2) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-biostrings:s390x 11 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-biostrings:s390x 11 125s Investigating (0) r-cran-vctrs:s390x < none -> 0.6.5-1 @un puN Ib > 125s Broken r-cran-vctrs:s390x Depends on r-cran-rlang:s390x < none @un pH > (>= 1.1.0) 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-vctrs:s390x 11 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-vctrs:s390x 11 125s Investigating (0) r-bioc-genomicranges:s390x < none -> 1.58.0+dfsg-2 @un puN Ib > 125s Broken r-bioc-genomicranges:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.37.1) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicranges:s390x 11 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicranges:s390x 11 125s Investigating (0) r-cran-rsqlite:s390x < none -> 2.3.9-1 @un puN Ib > 125s Broken r-cran-rsqlite:s390x Depends on r-cran-rlang:s390x < none @un pH > 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-rsqlite:s390x 7 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-rsqlite:s390x 7 125s Investigating (0) r-bioc-annotationdbi:s390x < none -> 1.68.0-2 @un puN Ib > 125s Broken r-bioc-annotationdbi:s390x Depends on r-bioc-iranges:s390x < none @un pH > 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-annotationdbi:s390x 6 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-annotationdbi:s390x 6 125s Investigating (0) r-bioc-rsamtools:s390x < none -> 2.22.0+dfsg-2 @un puN Ib > 125s Broken r-bioc-rsamtools:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.13.12) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-rsamtools:s390x 5 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-rsamtools:s390x 5 125s Investigating (0) r-bioc-rtracklayer:s390x < none -> 1.66.0-2 @un puN Ib > 125s Broken r-bioc-rtracklayer:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.13.13) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-rtracklayer:s390x 4 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-rtracklayer:s390x 4 125s Investigating (0) r-cran-lifecycle:s390x < none -> 1.0.4+dfsg-1 @un puN Ib > 125s Broken r-cran-lifecycle:s390x Depends on r-cran-rlang:s390x < none @un pH > (>= 1.1.0) 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-lifecycle:s390x 4 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-lifecycle:s390x 4 125s Investigating (0) r-bioc-s4arrays:s390x < none -> 1.6.0+dfsg-2 @un puN Ib > 125s Broken r-bioc-s4arrays:s390x Depends on r-bioc-iranges:s390x < none @un pH > 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-s4arrays:s390x 2 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-s4arrays:s390x 2 125s Investigating (0) r-bioc-genomicalignments:s390x < none -> 1.42.0-2 @un puN Ib > 125s Broken r-bioc-genomicalignments:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.23.9) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicalignments:s390x 2 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicalignments:s390x 2 125s Investigating (0) r-cran-memoise:s390x < none -> 2.0.1-1 @un puN Ib > 125s Broken r-cran-memoise:s390x Depends on r-cran-rlang:s390x < none @un pH > (>= 0.4.10) 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-memoise:s390x 1 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-memoise:s390x 1 125s Investigating (0) r-bioc-genomicfeatures:s390x < none -> 1.58.0+dfsg-2 @un puN Ib > 125s Broken r-bioc-genomicfeatures:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.37.1) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicfeatures:s390x 1 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicfeatures:s390x 1 125s Investigating (0) r-cran-blob:s390x < none -> 1.2.4-1 @un puN Ib > 125s Broken r-cran-blob:s390x Depends on r-cran-rlang:s390x < none @un pH > 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-blob:s390x 1 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-blob:s390x 1 125s Investigating (0) r-bioc-bsgenome:s390x < none -> 1.74.0-2 @un puN Ib > 125s Broken r-bioc-bsgenome:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.13.16) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-bsgenome:s390x 1 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-bsgenome:s390x 1 125s Investigating (0) r-bioc-delayedarray:s390x < none -> 0.32.0+dfsg-2 @un puN Ib > 125s Broken r-bioc-delayedarray:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.17.3) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-delayedarray:s390x 0 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-delayedarray:s390x 0 125s Investigating (0) r-bioc-summarizedexperiment:s390x < none -> 1.36.0+dfsg-2 @un puN Ib > 125s Broken r-bioc-summarizedexperiment:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.23.9) 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-summarizedexperiment:s390x 0 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-summarizedexperiment:s390x 0 125s Investigating (0) r-cran-cachem:s390x < none -> 1.1.0-1 @un puN Ib > 125s Broken r-cran-cachem:s390x Depends on r-cran-rlang:s390x < none @un pH > 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-cachem:s390x 0 125s Considering r-cran-rlang:s390x 4 as a solution to r-cran-cachem:s390x 0 125s Investigating (0) r-bioc-sparsearray:s390x < none -> 1.6.2+dfsg-1 @un puN Ib > 125s Broken r-bioc-sparsearray:s390x Depends on r-bioc-iranges:s390x < none @un pH > 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-sparsearray:s390x 0 125s Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-sparsearray:s390x 0 125s Done 125s Some packages could not be installed. This may mean that you have 125s requested an impossible situation or if you are using the unstable 125s distribution that some required packages have not yet been created 125s or been moved out of Incoming. 125s The following information may help to resolve the situation: 125s 125s The following packages have unmet dependencies: 125s r-bioc-annotationdbi : Depends: r-bioc-iranges but it is not installable 125s r-bioc-biostrings : Depends: r-bioc-iranges (>= 2.31.2) but it is not installable 125s r-bioc-bsgenome : Depends: r-bioc-iranges (>= 2.13.16) but it is not installable 125s r-bioc-delayedarray : Depends: r-bioc-iranges (>= 2.17.3) but it is not installable 125s r-bioc-genomeinfodb : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable 125s r-bioc-genomicalignments : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable 125s r-bioc-genomicfeatures : Depends: r-bioc-iranges (>= 2.37.1) but it is not installable 125s r-bioc-genomicranges : Depends: r-bioc-iranges (>= 2.37.1) but it is not installable 125s r-bioc-rsamtools : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable 125s r-bioc-rtracklayer : Depends: r-bioc-iranges (>= 2.13.13) but it is not installable 125s r-bioc-s4arrays : Depends: r-bioc-iranges but it is not installable 125s r-bioc-sparsearray : Depends: r-bioc-iranges but it is not installable 125s r-bioc-summarizedexperiment : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable 125s r-bioc-xvector : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable 125s r-cran-blob : Depends: r-cran-rlang but it is not installable 125s r-cran-cachem : Depends: r-cran-rlang but it is not installable 125s r-cran-lifecycle : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 125s r-cran-memoise : Depends: r-cran-rlang (>= 0.4.10) but it is not installable 125s r-cran-rsqlite : Depends: r-cran-rlang but it is not installable 125s r-cran-vctrs : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 125s E: Unable to correct problems, you have held broken packages. 125s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Starting pkgProblemResolver with broken count: 0 126s Starting 2 pkgProblemResolver with broken count: 0 126s Done 127s The following NEW packages will be installed: 127s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 127s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 127s g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 127s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 127s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8 127s libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libcairo2 127s libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libfreetype6 127s libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 127s libharfbuzz0b libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 127s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev 127s liblapack3 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 127s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 127s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 127s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 127s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 127s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 libzstd-dev 127s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 127s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 127s r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 127s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 127s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 127s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 127s r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 127s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 127s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 127s r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops 127s r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 127s r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-formatr 127s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-httr 127s r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle 127s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 127s r-cran-pkgconfig r-cran-plogr r-cran-png r-cran-r6 r-cran-rcurl 127s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-runit 127s r-cran-snow r-cran-statmod r-cran-survival r-cran-sys r-cran-vctrs 127s r-cran-xml r-cran-xtable r-cran-yaml unzip x11-common xdg-utils zip 127s zlib1g-dev 127s The following packages will be upgraded: 127s gcc-14-base gcc-15-base libatomic1 libgcc-s1 libstdc++6 libtirpc-common 127s libtirpc3t64 libzstd1 zstd 127s 9 upgraded, 175 newly installed, 0 to remove and 95 not upgraded. 127s Need to get 308 MB of archives. 127s After this operation, 1072 MB of additional disk space will be used. 127s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-15-base s390x 15.1.0-2ubuntu1 [54.6 kB] 127s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgcc-s1 s390x 15.1.0-2ubuntu1 [35.7 kB] 127s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libatomic1 s390x 15.1.0-2ubuntu1 [9564 B] 127s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libstdc++6 s390x 15.1.0-2ubuntu1 [906 kB] 127s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libzstd1 s390x 1.5.7+dfsg-1 [345 kB] 127s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-14-base s390x 14.2.0-22ubuntu1 [55.1 kB] 127s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libtirpc-common all 1.3.6+ds-1 [8198 B] 127s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libtirpc3t64 s390x 1.3.6+ds-1 [84.9 kB] 127s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x libisl23 s390x 0.27-1 [704 kB] 127s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 127s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [9570 kB] 128s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/main s390x cpp-14 s390x 14.2.0-22ubuntu1 [1028 B] 128s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 128s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 128s Get:15 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libcc1-0 s390x 15.1.0-2ubuntu1 [49.8 kB] 128s Get:16 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgomp1 s390x 15.1.0-2ubuntu1 [153 kB] 128s Get:17 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libitm1 s390x 15.1.0-2ubuntu1 [31.1 kB] 128s Get:18 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libasan8 s390x 15.1.0-2ubuntu1 [2970 kB] 128s Get:19 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libubsan1 s390x 15.1.0-2ubuntu1 [1210 kB] 128s Get:20 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgcc-14-dev s390x 14.2.0-22ubuntu1 [1037 kB] 128s Get:21 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [18.7 MB] 128s Get:22 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-14 s390x 14.2.0-22ubuntu1 [536 kB] 128s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 128s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 128s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libstdc++-14-dev s390x 14.2.0-22ubuntu1 [2961 kB] 129s Get:26 http://ftpmaster.internal/ubuntu questing-proposed/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [11.0 MB] 129s Get:27 http://ftpmaster.internal/ubuntu questing-proposed/main s390x g++-14 s390x 14.2.0-22ubuntu1 [24.0 kB] 129s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 129s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 129s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x build-essential s390x 12.12ubuntu1 [5090 B] 129s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 129s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 129s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 129s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 129s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 129s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 129s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig s390x 2.15.0-2.2ubuntu1 [191 kB] 129s Get:38 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgfortran5 s390x 15.1.0-2ubuntu1 [614 kB] 129s Get:39 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgfortran-14-dev s390x 14.2.0-22ubuntu1 [653 kB] 129s Get:40 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [10.3 MB] 130s Get:41 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gfortran-14 s390x 14.2.0-22ubuntu1 [14.4 kB] 130s Get:42 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 130s Get:43 http://ftpmaster.internal/ubuntu questing/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 130s Get:44 http://ftpmaster.internal/ubuntu questing/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 130s Get:45 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 130s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 130s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x libboost1.83-dev s390x 1.83.0-4.2ubuntu1 [10.7 MB] 130s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B] 130s Get:49 http://ftpmaster.internal/ubuntu questing/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 130s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 130s Get:51 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 130s Get:52 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 130s Get:53 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 130s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB] 130s Get:55 http://ftpmaster.internal/ubuntu questing/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 130s Get:56 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libdeflate0 s390x 1.23-2 [46.0 kB] 130s Get:57 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libdeflate-dev s390x 1.23-2 [51.9 kB] 130s Get:58 http://ftpmaster.internal/ubuntu questing/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 130s Get:59 http://ftpmaster.internal/ubuntu questing/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 131s Get:60 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 131s Get:61 http://ftpmaster.internal/ubuntu questing/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 131s Get:62 http://ftpmaster.internal/ubuntu questing/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 131s Get:63 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 131s Get:64 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 131s Get:65 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 131s Get:66 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 131s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 131s Get:68 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 131s Get:69 http://ftpmaster.internal/ubuntu questing/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 132s Get:70 http://ftpmaster.internal/ubuntu questing/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 132s Get:71 http://ftpmaster.internal/ubuntu questing/main s390x libthai-data all 0.1.29-2build1 [158 kB] 132s Get:72 http://ftpmaster.internal/ubuntu questing/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 132s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x libpango-1.0-0 s390x 1.56.3-1 [254 kB] 132s Get:74 http://ftpmaster.internal/ubuntu questing/main s390x libpangoft2-1.0-0 s390x 1.56.3-1 [50.5 kB] 132s Get:75 http://ftpmaster.internal/ubuntu questing/main s390x libpangocairo-1.0-0 s390x 1.56.3-1 [28.2 kB] 132s Get:76 http://ftpmaster.internal/ubuntu questing/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 132s Get:77 http://ftpmaster.internal/ubuntu questing/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 132s Get:78 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 132s Get:79 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 132s Get:80 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 132s Get:81 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 132s Get:82 http://ftpmaster.internal/ubuntu questing/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 132s Get:83 http://ftpmaster.internal/ubuntu questing/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 132s Get:84 http://ftpmaster.internal/ubuntu questing/main s390x libpng-dev s390x 1.6.47-1.1 [278 kB] 132s Get:85 http://ftpmaster.internal/ubuntu questing/main s390x libreadline-dev s390x 8.2-6 [187 kB] 132s Get:86 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 132s Get:87 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libsm6 s390x 2:1.2.6-1 [18.3 kB] 132s Get:88 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 132s Get:89 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 132s Get:90 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 132s Get:91 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.7.0-3ubuntu1 [219 kB] 132s Get:92 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 132s Get:93 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 132s Get:94 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 132s Get:95 http://ftpmaster.internal/ubuntu questing/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 132s Get:96 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libzstd-dev s390x 1.5.7+dfsg-1 [415 kB] 132s Get:97 http://ftpmaster.internal/ubuntu questing/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 132s Get:98 http://ftpmaster.internal/ubuntu questing/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 132s Get:99 http://ftpmaster.internal/ubuntu questing/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 132s Get:100 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-base-core s390x 4.5.0-3 [29.0 MB] 135s Get:101 http://ftpmaster.internal/ubuntu questing/main s390x liblzma-dev s390x 5.6.4-1ubuntu1 [184 kB] 135s Get:102 http://ftpmaster.internal/ubuntu questing/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 135s Get:103 http://ftpmaster.internal/ubuntu questing/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 135s Get:104 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libtirpc-dev s390x 1.3.6+ds-1 [196 kB] 136s Get:105 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-base-dev all 4.5.0-3 [4188 B] 136s Get:106 http://ftpmaster.internal/ubuntu questing/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 136s Get:107 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 136s Get:108 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB] 136s Get:109 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB] 136s Get:110 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-bioc-iranges s390x 2.40.1-3 [2300 kB] 136s Get:111 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-dbi all 1.2.3-1 [853 kB] 136s Get:112 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB] 136s Get:113 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB] 136s Get:114 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-cran-rlang s390x 1.1.5-3 [1711 kB] 137s Get:115 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB] 137s Get:116 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB] 137s Get:117 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 137s Get:118 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 137s Get:119 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 137s Get:120 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB] 137s Get:121 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB] 137s Get:122 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 137s Get:123 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 137s Get:124 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 137s Get:125 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB] 137s Get:126 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB] 137s Get:127 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB] 137s Get:128 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB] 137s Get:129 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB] 137s Get:130 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB] 137s Get:131 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB] 137s Get:132 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB] 137s Get:133 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-r6 all 2.6.1-1 [101 kB] 137s Get:134 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 137s Get:135 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB] 137s Get:136 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 137s Get:137 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB] 137s Get:138 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 137s Get:139 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 138s Get:140 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 138s Get:141 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-crayon all 1.5.3-1 [165 kB] 138s Get:142 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB] 138s Get:143 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 138s Get:144 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 139s Get:145 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB] 139s Get:146 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 139s Get:147 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 139s Get:148 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 139s Get:149 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-formatr all 1.14-2 [152 kB] 139s Get:150 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 139s Get:151 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 139s Get:152 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 139s Get:153 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 139s Get:154 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB] 139s Get:155 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 139s Get:156 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB] 139s Get:157 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB] 139s Get:158 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB] 139s Get:159 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB] 139s Get:160 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-rsamtools s390x 2.22.0+dfsg-2 [3729 kB] 139s Get:161 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB] 139s Get:162 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 139s Get:163 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-cran-lattice s390x 0.22-7-1 [1365 kB] 139s Get:164 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 139s Get:165 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB] 139s Get:166 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB] 139s Get:167 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB] 139s Get:168 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB] 139s Get:169 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 140s Get:170 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomicalignments s390x 1.42.0-2 [2152 kB] 140s Get:171 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB] 140s Get:172 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rjson s390x 0.2.23-1 [104 kB] 140s Get:173 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 140s Get:174 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 140s Get:175 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-rtracklayer s390x 1.66.0-2 [5235 kB] 140s Get:176 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-bsgenome all 1.74.0-2 [7001 kB] 140s Get:177 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB] 141s Get:178 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genefilter s390x 1.88.0-2 [1239 kB] 141s Get:179 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 141s Get:180 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB] 141s Get:181 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-limma s390x 3.62.2+dfsg-1 [1973 kB] 141s Get:182 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-org.hs.eg.db all 3.20.0-3 [63.1 MB] 144s Get:183 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-runit all 0.4.33-1 [377 kB] 144s Get:184 http://ftpmaster.internal/ubuntu questing-proposed/main s390x zstd s390x 1.5.7+dfsg-1 [722 kB] 145s Preconfiguring packages ... 145s Fetched 308 MB in 17s (17.7 MB/s) 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81470 files and directories currently installed.) 147s Preparing to unpack .../gcc-15-base_15.1.0-2ubuntu1_s390x.deb ... 147s Unpacking gcc-15-base:s390x (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ... 147s Setting up gcc-15-base:s390x (15.1.0-2ubuntu1) ... 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81470 files and directories currently installed.) 147s Preparing to unpack .../libgcc-s1_15.1.0-2ubuntu1_s390x.deb ... 147s Unpacking libgcc-s1:s390x (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ... 147s Setting up libgcc-s1:s390x (15.1.0-2ubuntu1) ... 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81470 files and directories currently installed.) 147s Preparing to unpack .../libatomic1_15.1.0-2ubuntu1_s390x.deb ... 147s Unpacking libatomic1:s390x (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ... 147s Preparing to unpack .../libstdc++6_15.1.0-2ubuntu1_s390x.deb ... 147s Unpacking libstdc++6:s390x (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ... 147s Setting up libstdc++6:s390x (15.1.0-2ubuntu1) ... 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81470 files and directories currently installed.) 147s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_s390x.deb ... 147s Unpacking libzstd1:s390x (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 147s Setting up libzstd1:s390x (1.5.7+dfsg-1) ... 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81470 files and directories currently installed.) 147s Preparing to unpack .../000-gcc-14-base_14.2.0-22ubuntu1_s390x.deb ... 147s Unpacking gcc-14-base:s390x (14.2.0-22ubuntu1) over (14.2.0-19ubuntu2) ... 147s Preparing to unpack .../001-libtirpc-common_1.3.6+ds-1_all.deb ... 147s Unpacking libtirpc-common (1.3.6+ds-1) over (1.3.4+ds-1.3) ... 147s Preparing to unpack .../002-libtirpc3t64_1.3.6+ds-1_s390x.deb ... 147s Unpacking libtirpc3t64:s390x (1.3.6+ds-1) over (1.3.4+ds-1.3) ... 147s Selecting previously unselected package libisl23:s390x. 147s Preparing to unpack .../003-libisl23_0.27-1_s390x.deb ... 147s Unpacking libisl23:s390x (0.27-1) ... 147s Selecting previously unselected package libmpc3:s390x. 147s Preparing to unpack .../004-libmpc3_1.3.1-1build2_s390x.deb ... 147s Unpacking libmpc3:s390x (1.3.1-1build2) ... 147s Selecting previously unselected package cpp-14-s390x-linux-gnu. 147s Preparing to unpack .../005-cpp-14-s390x-linux-gnu_14.2.0-22ubuntu1_s390x.deb ... 147s Unpacking cpp-14-s390x-linux-gnu (14.2.0-22ubuntu1) ... 147s Selecting previously unselected package cpp-14. 147s Preparing to unpack .../006-cpp-14_14.2.0-22ubuntu1_s390x.deb ... 147s Unpacking cpp-14 (14.2.0-22ubuntu1) ... 147s Selecting previously unselected package cpp-s390x-linux-gnu. 147s Preparing to unpack .../007-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 147s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 147s Selecting previously unselected package cpp. 147s Preparing to unpack .../008-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 147s Unpacking cpp (4:14.2.0-1ubuntu1) ... 147s Selecting previously unselected package libcc1-0:s390x. 147s Preparing to unpack .../009-libcc1-0_15.1.0-2ubuntu1_s390x.deb ... 147s Unpacking libcc1-0:s390x (15.1.0-2ubuntu1) ... 147s Selecting previously unselected package libgomp1:s390x. 147s Preparing to unpack .../010-libgomp1_15.1.0-2ubuntu1_s390x.deb ... 147s Unpacking libgomp1:s390x (15.1.0-2ubuntu1) ... 148s Selecting previously unselected package libitm1:s390x. 148s Preparing to unpack .../011-libitm1_15.1.0-2ubuntu1_s390x.deb ... 148s Unpacking libitm1:s390x (15.1.0-2ubuntu1) ... 148s Selecting previously unselected package libasan8:s390x. 148s Preparing to unpack .../012-libasan8_15.1.0-2ubuntu1_s390x.deb ... 148s Unpacking libasan8:s390x (15.1.0-2ubuntu1) ... 148s Selecting previously unselected package libubsan1:s390x. 148s Preparing to unpack .../013-libubsan1_15.1.0-2ubuntu1_s390x.deb ... 148s Unpacking libubsan1:s390x (15.1.0-2ubuntu1) ... 148s Selecting previously unselected package libgcc-14-dev:s390x. 148s Preparing to unpack .../014-libgcc-14-dev_14.2.0-22ubuntu1_s390x.deb ... 148s Unpacking libgcc-14-dev:s390x (14.2.0-22ubuntu1) ... 148s Selecting previously unselected package gcc-14-s390x-linux-gnu. 148s Preparing to unpack .../015-gcc-14-s390x-linux-gnu_14.2.0-22ubuntu1_s390x.deb ... 148s Unpacking gcc-14-s390x-linux-gnu (14.2.0-22ubuntu1) ... 148s Selecting previously unselected package gcc-14. 148s Preparing to unpack .../016-gcc-14_14.2.0-22ubuntu1_s390x.deb ... 148s Unpacking gcc-14 (14.2.0-22ubuntu1) ... 148s Selecting previously unselected package gcc-s390x-linux-gnu. 148s Preparing to unpack .../017-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 148s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 148s Selecting previously unselected package gcc. 148s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 148s Unpacking gcc (4:14.2.0-1ubuntu1) ... 148s Selecting previously unselected package libstdc++-14-dev:s390x. 148s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-22ubuntu1_s390x.deb ... 148s Unpacking libstdc++-14-dev:s390x (14.2.0-22ubuntu1) ... 148s Selecting previously unselected package g++-14-s390x-linux-gnu. 148s Preparing to unpack .../020-g++-14-s390x-linux-gnu_14.2.0-22ubuntu1_s390x.deb ... 148s Unpacking g++-14-s390x-linux-gnu (14.2.0-22ubuntu1) ... 148s Selecting previously unselected package g++-14. 148s Preparing to unpack .../021-g++-14_14.2.0-22ubuntu1_s390x.deb ... 148s Unpacking g++-14 (14.2.0-22ubuntu1) ... 148s Selecting previously unselected package g++-s390x-linux-gnu. 148s Preparing to unpack .../022-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 148s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 148s Selecting previously unselected package g++. 148s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 148s Unpacking g++ (4:14.2.0-1ubuntu1) ... 148s Selecting previously unselected package build-essential. 148s Preparing to unpack .../024-build-essential_12.12ubuntu1_s390x.deb ... 148s Unpacking build-essential (12.12ubuntu1) ... 148s Selecting previously unselected package dctrl-tools. 148s Preparing to unpack .../025-dctrl-tools_2.24-3build3_s390x.deb ... 148s Unpacking dctrl-tools (2.24-3build3) ... 148s Selecting previously unselected package libfreetype6:s390x. 149s Preparing to unpack .../026-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 149s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 149s Selecting previously unselected package fonts-dejavu-mono. 149s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 149s Unpacking fonts-dejavu-mono (2.37-8) ... 149s Selecting previously unselected package fonts-dejavu-core. 149s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 149s Unpacking fonts-dejavu-core (2.37-8) ... 149s Selecting previously unselected package fontconfig-config. 149s Preparing to unpack .../029-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 149s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 149s Selecting previously unselected package libfontconfig1:s390x. 149s Preparing to unpack .../030-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 149s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 149s Selecting previously unselected package fontconfig. 149s Preparing to unpack .../031-fontconfig_2.15.0-2.2ubuntu1_s390x.deb ... 149s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 149s Selecting previously unselected package libgfortran5:s390x. 149s Preparing to unpack .../032-libgfortran5_15.1.0-2ubuntu1_s390x.deb ... 149s Unpacking libgfortran5:s390x (15.1.0-2ubuntu1) ... 149s Selecting previously unselected package libgfortran-14-dev:s390x. 149s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-22ubuntu1_s390x.deb ... 149s Unpacking libgfortran-14-dev:s390x (14.2.0-22ubuntu1) ... 149s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 149s Preparing to unpack .../034-gfortran-14-s390x-linux-gnu_14.2.0-22ubuntu1_s390x.deb ... 149s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-22ubuntu1) ... 149s Selecting previously unselected package gfortran-14. 149s Preparing to unpack .../035-gfortran-14_14.2.0-22ubuntu1_s390x.deb ... 149s Unpacking gfortran-14 (14.2.0-22ubuntu1) ... 149s Selecting previously unselected package gfortran-s390x-linux-gnu. 149s Preparing to unpack .../036-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 149s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 149s Selecting previously unselected package gfortran. 149s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 149s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 149s Selecting previously unselected package icu-devtools. 149s Preparing to unpack .../038-icu-devtools_76.1-1ubuntu2_s390x.deb ... 149s Unpacking icu-devtools (76.1-1ubuntu2) ... 149s Selecting previously unselected package libblas3:s390x. 149s Preparing to unpack .../039-libblas3_3.12.1-2_s390x.deb ... 149s Unpacking libblas3:s390x (3.12.1-2) ... 149s Selecting previously unselected package libblas-dev:s390x. 149s Preparing to unpack .../040-libblas-dev_3.12.1-2_s390x.deb ... 149s Unpacking libblas-dev:s390x (3.12.1-2) ... 149s Selecting previously unselected package libboost1.83-dev:s390x. 149s Preparing to unpack .../041-libboost1.83-dev_1.83.0-4.2ubuntu1_s390x.deb ... 149s Unpacking libboost1.83-dev:s390x (1.83.0-4.2ubuntu1) ... 151s Selecting previously unselected package libboost-dev:s390x. 151s Preparing to unpack .../042-libboost-dev_1.83.0.2ubuntu1_s390x.deb ... 151s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ... 151s Selecting previously unselected package libbz2-dev:s390x. 151s Preparing to unpack .../043-libbz2-dev_1.0.8-6_s390x.deb ... 151s Unpacking libbz2-dev:s390x (1.0.8-6) ... 151s Selecting previously unselected package libpixman-1-0:s390x. 151s Preparing to unpack .../044-libpixman-1-0_0.44.0-3_s390x.deb ... 151s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 151s Selecting previously unselected package libxcb-render0:s390x. 151s Preparing to unpack .../045-libxcb-render0_1.17.0-2_s390x.deb ... 151s Unpacking libxcb-render0:s390x (1.17.0-2) ... 151s Selecting previously unselected package libxcb-shm0:s390x. 151s Preparing to unpack .../046-libxcb-shm0_1.17.0-2_s390x.deb ... 151s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 151s Selecting previously unselected package libxrender1:s390x. 151s Preparing to unpack .../047-libxrender1_1%3a0.9.12-1_s390x.deb ... 151s Unpacking libxrender1:s390x (1:0.9.12-1) ... 151s Selecting previously unselected package libcairo2:s390x. 151s Preparing to unpack .../048-libcairo2_1.18.4-1_s390x.deb ... 151s Unpacking libcairo2:s390x (1.18.4-1) ... 151s Selecting previously unselected package libdatrie1:s390x. 151s Preparing to unpack .../049-libdatrie1_0.2.13-3build1_s390x.deb ... 151s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 151s Selecting previously unselected package libdeflate0:s390x. 151s Preparing to unpack .../050-libdeflate0_1.23-2_s390x.deb ... 151s Unpacking libdeflate0:s390x (1.23-2) ... 151s Selecting previously unselected package libdeflate-dev:s390x. 151s Preparing to unpack .../051-libdeflate-dev_1.23-2_s390x.deb ... 151s Unpacking libdeflate-dev:s390x (1.23-2) ... 151s Selecting previously unselected package libgraphite2-3:s390x. 151s Preparing to unpack .../052-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 151s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 151s Selecting previously unselected package libharfbuzz0b:s390x. 151s Preparing to unpack .../053-libharfbuzz0b_10.2.0-1_s390x.deb ... 151s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 151s Selecting previously unselected package x11-common. 151s Preparing to unpack .../054-x11-common_1%3a7.7+23ubuntu4_all.deb ... 151s Unpacking x11-common (1:7.7+23ubuntu4) ... 152s Selecting previously unselected package libice6:s390x. 152s Preparing to unpack .../055-libice6_2%3a1.1.1-1_s390x.deb ... 152s Unpacking libice6:s390x (2:1.1.1-1) ... 152s Selecting previously unselected package libicu-dev:s390x. 152s Preparing to unpack .../056-libicu-dev_76.1-1ubuntu2_s390x.deb ... 152s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 152s Selecting previously unselected package libjpeg-turbo8:s390x. 152s Preparing to unpack .../057-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 152s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 152s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 152s Preparing to unpack .../058-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 152s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 152s Selecting previously unselected package libjpeg8:s390x. 152s Preparing to unpack .../059-libjpeg8_8c-2ubuntu11_s390x.deb ... 152s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 152s Selecting previously unselected package libjpeg8-dev:s390x. 152s Preparing to unpack .../060-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 152s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 152s Selecting previously unselected package libjpeg-dev:s390x. 152s Preparing to unpack .../061-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 152s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 152s Selecting previously unselected package liblapack3:s390x. 152s Preparing to unpack .../062-liblapack3_3.12.1-2_s390x.deb ... 152s Unpacking liblapack3:s390x (3.12.1-2) ... 152s Selecting previously unselected package liblapack-dev:s390x. 152s Preparing to unpack .../063-liblapack-dev_3.12.1-2_s390x.deb ... 152s Unpacking liblapack-dev:s390x (3.12.1-2) ... 152s Selecting previously unselected package libncurses-dev:s390x. 152s Preparing to unpack .../064-libncurses-dev_6.5+20250216-2_s390x.deb ... 152s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 152s Selecting previously unselected package libthai-data. 152s Preparing to unpack .../065-libthai-data_0.1.29-2build1_all.deb ... 152s Unpacking libthai-data (0.1.29-2build1) ... 152s Selecting previously unselected package libthai0:s390x. 152s Preparing to unpack .../066-libthai0_0.1.29-2build1_s390x.deb ... 152s Unpacking libthai0:s390x (0.1.29-2build1) ... 152s Selecting previously unselected package libpango-1.0-0:s390x. 152s Preparing to unpack .../067-libpango-1.0-0_1.56.3-1_s390x.deb ... 152s Unpacking libpango-1.0-0:s390x (1.56.3-1) ... 152s Selecting previously unselected package libpangoft2-1.0-0:s390x. 152s Preparing to unpack .../068-libpangoft2-1.0-0_1.56.3-1_s390x.deb ... 152s Unpacking libpangoft2-1.0-0:s390x (1.56.3-1) ... 152s Selecting previously unselected package libpangocairo-1.0-0:s390x. 152s Preparing to unpack .../069-libpangocairo-1.0-0_1.56.3-1_s390x.deb ... 152s Unpacking libpangocairo-1.0-0:s390x (1.56.3-1) ... 152s Selecting previously unselected package libpaper2:s390x. 152s Preparing to unpack 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(10.45-1) ... 153s Selecting previously unselected package libpkgconf3:s390x. 153s Preparing to unpack .../076-libpkgconf3_1.8.1-4_s390x.deb ... 153s Unpacking libpkgconf3:s390x (1.8.1-4) ... 153s Selecting previously unselected package zlib1g-dev:s390x. 153s Preparing to unpack .../077-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 153s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 153s Selecting previously unselected package libpng-dev:s390x. 153s Preparing to unpack .../078-libpng-dev_1.6.47-1.1_s390x.deb ... 153s Unpacking libpng-dev:s390x (1.6.47-1.1) ... 153s Selecting previously unselected package libreadline-dev:s390x. 153s Preparing to unpack .../079-libreadline-dev_8.2-6_s390x.deb ... 153s Unpacking libreadline-dev:s390x (8.2-6) ... 153s Selecting previously unselected package libsharpyuv0:s390x. 153s Preparing to unpack .../080-libsharpyuv0_1.5.0-0.1_s390x.deb ... 153s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 153s Selecting previously unselected package libsm6:s390x. 153s Preparing to unpack .../081-libsm6_2%3a1.2.6-1_s390x.deb ... 153s Unpacking libsm6:s390x (2:1.2.6-1) ... 153s Selecting previously unselected package libtcl8.6:s390x. 153s Preparing to unpack .../082-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 153s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 153s Selecting previously unselected package libjbig0:s390x. 153s Preparing to unpack .../083-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 153s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 153s Selecting previously unselected package libwebp7:s390x. 153s Preparing to unpack .../084-libwebp7_1.5.0-0.1_s390x.deb ... 153s Unpacking libwebp7:s390x (1.5.0-0.1) ... 153s Selecting previously unselected package libtiff6:s390x. 153s Preparing to unpack .../085-libtiff6_4.7.0-3ubuntu1_s390x.deb ... 153s Unpacking libtiff6:s390x (4.7.0-3ubuntu1) ... 153s Selecting previously unselected package libxft2:s390x. 153s Preparing to unpack .../086-libxft2_2.3.6-1build1_s390x.deb ... 153s Unpacking libxft2:s390x (2.3.6-1build1) ... 153s Selecting previously unselected package libxss1:s390x. 153s Preparing to unpack .../087-libxss1_1%3a1.2.3-1build3_s390x.deb ... 153s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 153s Selecting previously unselected package libtk8.6:s390x. 153s Preparing to unpack .../088-libtk8.6_8.6.16-1_s390x.deb ... 153s Unpacking libtk8.6:s390x (8.6.16-1) ... 153s Selecting previously unselected package libxt6t64:s390x. 153s Preparing to unpack .../089-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 153s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 153s Selecting previously unselected package libzstd-dev:s390x. 153s Preparing to unpack .../090-libzstd-dev_1.5.7+dfsg-1_s390x.deb ... 153s Unpacking libzstd-dev:s390x (1.5.7+dfsg-1) ... 153s Selecting previously unselected package zip. 153s Preparing to unpack .../091-zip_3.0-14ubuntu2_s390x.deb ... 153s Unpacking zip (3.0-14ubuntu2) ... 153s Selecting previously unselected package unzip. 153s Preparing to unpack .../092-unzip_6.0-28ubuntu6_s390x.deb ... 153s Unpacking unzip (6.0-28ubuntu6) ... 153s Selecting previously unselected package xdg-utils. 153s Preparing to unpack .../093-xdg-utils_1.2.1-2ubuntu1_all.deb ... 153s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 153s Selecting previously unselected package r-base-core. 153s Preparing to unpack .../094-r-base-core_4.5.0-3_s390x.deb ... 153s Unpacking r-base-core (4.5.0-3) ... 154s Selecting previously unselected package liblzma-dev:s390x. 154s Preparing to unpack .../095-liblzma-dev_5.6.4-1ubuntu1_s390x.deb ... 154s Unpacking liblzma-dev:s390x (5.6.4-1ubuntu1) ... 154s Selecting previously unselected package pkgconf-bin. 154s Preparing to unpack .../096-pkgconf-bin_1.8.1-4_s390x.deb ... 154s Unpacking pkgconf-bin (1.8.1-4) ... 154s Selecting previously unselected package pkgconf:s390x. 154s Preparing to unpack .../097-pkgconf_1.8.1-4_s390x.deb ... 154s Unpacking pkgconf:s390x (1.8.1-4) ... 154s Selecting previously unselected package libtirpc-dev:s390x. 154s Preparing to unpack .../098-libtirpc-dev_1.3.6+ds-1_s390x.deb ... 154s Unpacking libtirpc-dev:s390x (1.3.6+ds-1) ... 154s Selecting previously unselected package r-base-dev. 154s Preparing to unpack .../099-r-base-dev_4.5.0-3_all.deb ... 154s Unpacking r-base-dev (4.5.0-3) ... 154s Selecting previously unselected package pkg-r-autopkgtest. 154s Preparing to unpack .../100-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 154s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 154s Selecting previously unselected package r-bioc-biocgenerics. 154s Preparing to unpack .../101-r-bioc-biocgenerics_0.52.0-2_all.deb ... 154s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 154s Selecting previously unselected package r-bioc-biobase. 154s Preparing to unpack .../102-r-bioc-biobase_2.66.0-2_s390x.deb ... 154s Unpacking r-bioc-biobase (2.66.0-2) ... 154s Selecting previously unselected package r-bioc-s4vectors. 154s Preparing to unpack .../103-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ... 154s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 154s Selecting previously unselected package r-bioc-iranges. 154s Preparing to unpack .../104-r-bioc-iranges_2.40.1-3_s390x.deb ... 154s Unpacking r-bioc-iranges (2.40.1-3) ... 154s Selecting previously unselected package r-cran-dbi. 154s Preparing to unpack .../105-r-cran-dbi_1.2.3-1_all.deb ... 154s Unpacking r-cran-dbi (1.2.3-1) ... 154s Selecting previously unselected package r-cran-bit. 154s Preparing to unpack .../106-r-cran-bit_4.6.0+dfsg-1_s390x.deb ... 154s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 154s Selecting previously unselected package r-cran-bit64. 154s Preparing to unpack .../107-r-cran-bit64_4.6.0-1-1ubuntu2_s390x.deb ... 154s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 154s Selecting previously unselected package r-cran-rlang. 154s Preparing to unpack .../108-r-cran-rlang_1.1.5-3_s390x.deb ... 154s Unpacking r-cran-rlang (1.1.5-3) ... 154s Selecting previously unselected package r-cran-cli. 154s Preparing to unpack .../109-r-cran-cli_3.6.4-1_s390x.deb ... 154s Unpacking r-cran-cli (3.6.4-1) ... 154s Selecting previously unselected package r-cran-glue. 154s Preparing to unpack .../110-r-cran-glue_1.8.0-1_s390x.deb ... 154s Unpacking r-cran-glue (1.8.0-1) ... 154s Selecting previously unselected package r-cran-lifecycle. 154s Preparing to unpack .../111-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 154s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 154s Selecting previously unselected package r-cran-vctrs. 154s Preparing to unpack .../112-r-cran-vctrs_0.6.5-1_s390x.deb ... 154s Unpacking r-cran-vctrs (0.6.5-1) ... 154s Selecting previously unselected package r-cran-blob. 154s Preparing to unpack .../113-r-cran-blob_1.2.4-1_all.deb ... 154s Unpacking r-cran-blob (1.2.4-1) ... 154s Selecting previously unselected package r-cran-fastmap. 154s Preparing to unpack .../114-r-cran-fastmap_1.2.0-1_s390x.deb ... 154s Unpacking r-cran-fastmap (1.2.0-1) ... 154s Selecting previously unselected package r-cran-cachem. 154s Preparing to unpack .../115-r-cran-cachem_1.1.0-1_s390x.deb ... 154s Unpacking r-cran-cachem (1.1.0-1) ... 154s Selecting previously unselected package r-cran-memoise. 154s Preparing to unpack .../116-r-cran-memoise_2.0.1-1_all.deb ... 154s Unpacking r-cran-memoise (2.0.1-1) ... 154s Selecting previously unselected package r-cran-pkgconfig. 154s Preparing to unpack .../117-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 154s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 154s Selecting previously unselected package r-cran-plogr. 154s Preparing to unpack .../118-r-cran-plogr_0.2.0-3build1_all.deb ... 154s Unpacking r-cran-plogr (0.2.0-3build1) ... 154s Selecting previously unselected package r-cran-cpp11. 154s Preparing to unpack .../119-r-cran-cpp11_0.5.2-1_all.deb ... 154s Unpacking r-cran-cpp11 (0.5.2-1) ... 154s Selecting previously unselected package r-cran-rsqlite. 154s Preparing to unpack .../120-r-cran-rsqlite_2.3.9-1_s390x.deb ... 154s Unpacking r-cran-rsqlite (2.3.9-1) ... 154s Selecting previously unselected package r-cran-curl. 154s Preparing to unpack .../121-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ... 154s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 154s Selecting previously unselected package r-cran-jsonlite. 154s Preparing to unpack .../122-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ... 154s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 154s Selecting previously unselected package r-cran-mime. 154s Preparing to unpack .../123-r-cran-mime_0.12-2_s390x.deb ... 154s Unpacking r-cran-mime (0.12-2) ... 154s Selecting previously unselected package r-cran-sys. 154s Preparing to unpack .../124-r-cran-sys_3.4.3-1_s390x.deb ... 154s Unpacking r-cran-sys (3.4.3-1) ... 154s Selecting previously unselected package r-cran-askpass. 154s Preparing to unpack .../125-r-cran-askpass_1.2.1-1_s390x.deb ... 154s Unpacking r-cran-askpass (1.2.1-1) ... 154s Selecting previously unselected package r-cran-openssl. 154s Preparing to unpack .../126-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ... 154s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 154s Selecting previously unselected package r-cran-r6. 154s Preparing to unpack .../127-r-cran-r6_2.6.1-1_all.deb ... 154s Unpacking r-cran-r6 (2.6.1-1) ... 154s Selecting previously unselected package r-cran-httr. 154s Preparing to unpack .../128-r-cran-httr_1.4.7+dfsg-1_all.deb ... 154s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 154s Selecting previously unselected package r-cran-png. 154s Preparing to unpack .../129-r-cran-png_0.1-8-1build2_s390x.deb ... 154s Unpacking r-cran-png (0.1-8-1build2) ... 155s Selecting previously unselected package r-bioc-zlibbioc. 155s Preparing to unpack .../130-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 155s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 155s Selecting previously unselected package r-bioc-xvector. 155s Preparing to unpack .../131-r-bioc-xvector_0.46.0-2_s390x.deb ... 155s Unpacking r-bioc-xvector (0.46.0-2) ... 155s Selecting previously unselected package r-bioc-ucsc.utils. 155s Preparing to unpack .../132-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 155s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 155s Selecting previously unselected package r-bioc-genomeinfodbdata. 155s Preparing to unpack .../133-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 155s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 155s Selecting previously unselected package r-bioc-genomeinfodb. 155s Preparing to unpack .../134-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 155s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 155s Selecting previously unselected package r-cran-crayon. 155s Preparing to unpack .../135-r-cran-crayon_1.5.3-1_all.deb ... 155s Unpacking r-cran-crayon (1.5.3-1) ... 155s Selecting previously unselected package r-bioc-biostrings. 155s Preparing to unpack .../136-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ... 155s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 155s Selecting previously unselected package r-bioc-keggrest. 155s Preparing to unpack .../137-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 155s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 155s Selecting previously unselected package r-bioc-annotationdbi. 155s Preparing to unpack .../138-r-bioc-annotationdbi_1.68.0-2_all.deb ... 155s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 155s Selecting previously unselected package r-cran-xml. 155s Preparing to unpack .../139-r-cran-xml_3.99-0.18-1_s390x.deb ... 155s Unpacking r-cran-xml (3.99-0.18-1) ... 155s Selecting previously unselected package r-cran-xtable. 155s Preparing to unpack .../140-r-cran-xtable_1%3a1.8-4-2_all.deb ... 155s Unpacking r-cran-xtable (1:1.8-4-2) ... 155s Selecting previously unselected package r-bioc-annotate. 155s Preparing to unpack .../141-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 155s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 155s Selecting previously unselected package r-bioc-biocio. 155s Preparing to unpack .../142-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 155s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 155s Selecting previously unselected package r-cran-formatr. 155s Preparing to unpack .../143-r-cran-formatr_1.14-2_all.deb ... 155s Unpacking r-cran-formatr (1.14-2) ... 155s Selecting previously unselected package r-cran-lambda.r. 155s Preparing to unpack .../144-r-cran-lambda.r_1.2.4-2build1_all.deb ... 155s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 155s Selecting previously unselected package r-cran-futile.options. 155s Preparing to unpack .../145-r-cran-futile.options_1.0.1-3build1_all.deb ... 155s Unpacking r-cran-futile.options (1.0.1-3build1) ... 155s Selecting previously unselected package r-cran-futile.logger. 155s Preparing to unpack .../146-r-cran-futile.logger_1.4.3-4build1_all.deb ... 155s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 155s Selecting previously unselected package r-cran-snow. 155s Preparing to unpack .../147-r-cran-snow_1%3a0.4.4-2_all.deb ... 155s Unpacking r-cran-snow (1:0.4.4-2) ... 155s Selecting previously unselected package r-cran-codetools. 155s Preparing to unpack .../148-r-cran-codetools_0.2-20-1_all.deb ... 155s Unpacking r-cran-codetools (0.2-20-1) ... 155s Selecting previously unselected package r-cran-bh. 155s Preparing to unpack .../149-r-cran-bh_1.84.0-1_all.deb ... 155s Unpacking r-cran-bh (1.84.0-1) ... 155s Selecting previously unselected package r-bioc-biocparallel. 155s Preparing to unpack .../150-r-bioc-biocparallel_1.40.0-2_s390x.deb ... 155s Unpacking r-bioc-biocparallel (1.40.0-2) ... 155s Selecting previously unselected package r-bioc-genomicranges. 155s Preparing to unpack .../151-r-bioc-genomicranges_1.58.0+dfsg-2_s390x.deb ... 155s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 155s Selecting previously unselected package r-cran-bitops. 155s Preparing to unpack .../152-r-cran-bitops_1.0-9-1_s390x.deb ... 155s Unpacking r-cran-bitops (1.0-9-1) ... 155s Selecting previously unselected package r-bioc-rhtslib. 155s Preparing to unpack .../153-r-bioc-rhtslib_3.2.0+dfsg-2_s390x.deb ... 155s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 155s Selecting previously unselected package r-bioc-rsamtools. 155s Preparing to unpack .../154-r-bioc-rsamtools_2.22.0+dfsg-2_s390x.deb ... 155s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 155s Selecting previously unselected package r-cran-matrixstats. 155s Preparing to unpack .../155-r-cran-matrixstats_1.5.0-1_s390x.deb ... 155s Unpacking r-cran-matrixstats (1.5.0-1) ... 155s Selecting previously unselected package r-bioc-matrixgenerics. 155s Preparing to unpack .../156-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 155s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 155s Selecting previously unselected package r-cran-lattice. 155s Preparing to unpack .../157-r-cran-lattice_0.22-7-1_s390x.deb ... 155s Unpacking r-cran-lattice (0.22-7-1) ... 155s Selecting previously unselected package r-cran-matrix. 155s Preparing to unpack .../158-r-cran-matrix_1.7-3-1_s390x.deb ... 155s Unpacking r-cran-matrix (1.7-3-1) ... 156s Selecting previously unselected package r-cran-abind. 156s Preparing to unpack .../159-r-cran-abind_1.4-8-1_all.deb ... 156s Unpacking r-cran-abind (1.4-8-1) ... 156s Selecting previously unselected package r-bioc-s4arrays. 156s Preparing to unpack .../160-r-bioc-s4arrays_1.6.0+dfsg-2_s390x.deb ... 156s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 156s Selecting previously unselected package r-bioc-sparsearray. 156s Preparing to unpack .../161-r-bioc-sparsearray_1.6.2+dfsg-1_s390x.deb ... 156s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 156s Selecting previously unselected package r-bioc-delayedarray. 156s Preparing to unpack .../162-r-bioc-delayedarray_0.32.0+dfsg-2_s390x.deb ... 156s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 156s Selecting previously unselected package r-bioc-summarizedexperiment. 156s Preparing to unpack .../163-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 156s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 156s Selecting previously unselected package r-bioc-genomicalignments. 156s Preparing to unpack .../164-r-bioc-genomicalignments_1.42.0-2_s390x.deb ... 156s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 156s Selecting previously unselected package r-cran-rcurl. 156s Preparing to unpack .../165-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ... 156s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 156s Selecting previously unselected package r-cran-rjson. 156s Preparing to unpack .../166-r-cran-rjson_0.2.23-1_s390x.deb ... 156s Unpacking r-cran-rjson (0.2.23-1) ... 156s Selecting previously unselected package r-cran-yaml. 156s Preparing to unpack .../167-r-cran-yaml_2.3.10-1_s390x.deb ... 156s Unpacking r-cran-yaml (2.3.10-1) ... 156s Selecting previously unselected package r-cran-restfulr. 156s Preparing to unpack .../168-r-cran-restfulr_0.0.15-1_s390x.deb ... 156s Unpacking r-cran-restfulr (0.0.15-1) ... 156s Selecting previously unselected package r-bioc-rtracklayer. 156s Preparing to unpack .../169-r-bioc-rtracklayer_1.66.0-2_s390x.deb ... 156s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 156s Selecting previously unselected package r-bioc-bsgenome. 156s Preparing to unpack .../170-r-bioc-bsgenome_1.74.0-2_all.deb ... 156s Unpacking r-bioc-bsgenome (1.74.0-2) ... 156s Selecting previously unselected package r-cran-survival. 156s Preparing to unpack .../171-r-cran-survival_3.8-3-1_s390x.deb ... 156s Unpacking r-cran-survival (3.8-3-1) ... 156s Selecting previously unselected package r-bioc-genefilter. 156s Preparing to unpack .../172-r-bioc-genefilter_1.88.0-2_s390x.deb ... 156s Unpacking r-bioc-genefilter (1.88.0-2) ... 156s Selecting previously unselected package r-bioc-genomicfeatures. 156s Preparing to unpack .../173-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 156s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 156s Selecting previously unselected package r-cran-statmod. 156s Preparing to unpack .../174-r-cran-statmod_1.5.0-1_s390x.deb ... 156s Unpacking r-cran-statmod (1.5.0-1) ... 156s Selecting previously unselected package r-bioc-limma. 156s Preparing to unpack .../175-r-bioc-limma_3.62.2+dfsg-1_s390x.deb ... 156s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 156s Selecting previously unselected package r-bioc-org.hs.eg.db. 156s Preparing to unpack .../176-r-bioc-org.hs.eg.db_3.20.0-3_all.deb ... 156s Unpacking r-bioc-org.hs.eg.db (3.20.0-3) ... 158s Selecting previously unselected package r-cran-runit. 158s Preparing to unpack .../177-r-cran-runit_0.4.33-1_all.deb ... 158s Unpacking r-cran-runit (0.4.33-1) ... 158s Preparing to unpack .../178-zstd_1.5.7+dfsg-1_s390x.deb ... 158s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 158s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 158s Setting up libpixman-1-0:s390x (0.44.0-3) ... 158s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 158s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 158s Setting up libzstd-dev:s390x (1.5.7+dfsg-1) ... 158s Setting up libxrender1:s390x (1:0.9.12-1) ... 158s Setting up libdatrie1:s390x (0.2.13-3build1) ... 158s Setting up gcc-14-base:s390x (14.2.0-22ubuntu1) ... 158s Setting up libxcb-render0:s390x (1.17.0-2) ... 158s Setting up libtirpc-common (1.3.6+ds-1) ... 159s Setting up unzip (6.0-28ubuntu6) ... 159s Setting up x11-common (1:7.7+23ubuntu4) ... 159s Setting up libdeflate0:s390x (1.23-2) ... 159s Setting up libxcb-shm0:s390x (1.17.0-2) ... 159s Setting up libreadline-dev:s390x (8.2-6) ... 159s Setting up libgomp1:s390x (15.1.0-2ubuntu1) ... 159s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 159s Setting up libpcre2-16-0:s390x (10.45-1) ... 159s Setting up zip (3.0-14ubuntu2) ... 159s Setting up libpcre2-32-0:s390x (10.45-1) ... 159s Setting up libblas3:s390x (3.12.1-2) ... 159s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 159s Setting up libpkgconf3:s390x (1.8.1-4) ... 159s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 159s Setting up fonts-dejavu-mono (2.37-8) ... 159s Setting up libmpc3:s390x (1.3.1-1build2) ... 159s Setting up libatomic1:s390x (15.1.0-2ubuntu1) ... 159s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 159s Setting up icu-devtools (76.1-1ubuntu2) ... 159s Setting up fonts-dejavu-core (2.37-8) ... 159s Setting up pkgconf-bin (1.8.1-4) ... 159s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 159s Setting up libgfortran5:s390x (15.1.0-2ubuntu1) ... 159s Setting up libwebp7:s390x (1.5.0-0.1) ... 159s Setting up liblzma-dev:s390x (5.6.4-1ubuntu1) ... 159s Setting up libubsan1:s390x (15.1.0-2ubuntu1) ... 159s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 159s Setting up libpcre2-posix3:s390x (10.45-1) ... 159s Setting up libasan8:s390x (15.1.0-2ubuntu1) ... 159s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 159s Setting up libthai-data (0.1.29-2build1) ... 159s Setting up libxss1:s390x (1:1.2.3-1build3) ... 159s Setting up libpaper2:s390x (2.2.5-0.3) ... 159s Setting up libisl23:s390x (0.27-1) ... 159s Setting up libdeflate-dev:s390x (1.23-2) ... 159s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 159s Setting up xdg-utils (1.2.1-2ubuntu1) ... 159s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 159s Setting up zstd (1.5.7+dfsg-1) ... 159s Setting up libcc1-0:s390x (15.1.0-2ubuntu1) ... 159s Setting up libblas-dev:s390x (3.12.1-2) ... 159s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 159s Setting up dctrl-tools (2.24-3build3) ... 159s Setting up libitm1:s390x (15.1.0-2ubuntu1) ... 159s Setting up libbz2-dev:s390x (1.0.8-6) ... 159s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 159s Setting up libice6:s390x (2:1.1.1-1) ... 159s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 159s Setting up liblapack3:s390x (3.12.1-2) ... 159s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 159s Setting up libpcre2-dev:s390x (10.45-1) ... 159s Setting up libtirpc3t64:s390x (1.3.6+ds-1) ... 159s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 159s Setting up libpng-dev:s390x (1.6.47-1.1) ... 159s Setting up libpaper-utils (2.2.5-0.3) ... 159s Setting up pkgconf:s390x (1.8.1-4) ... 159s Setting up libthai0:s390x (0.1.29-2build1) ... 159s Setting up libtirpc-dev:s390x (1.3.6+ds-1) ... 159s Setting up liblapack-dev:s390x (3.12.1-2) ... 159s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 159s Setting up cpp-14-s390x-linux-gnu (14.2.0-22ubuntu1) ... 159s Setting up cpp-14 (14.2.0-22ubuntu1) ... 159s Setting up libtiff6:s390x (4.7.0-3ubuntu1) ... 159s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 159s Setting up libgcc-14-dev:s390x (14.2.0-22ubuntu1) ... 159s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 159s Setting up libstdc++-14-dev:s390x (14.2.0-22ubuntu1) ... 159s Setting up libsm6:s390x (2:1.2.6-1) ... 159s Setting up libgfortran-14-dev:s390x (14.2.0-22ubuntu1) ... 159s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 161s Regenerating fonts cache... done. 161s Setting up libxft2:s390x (2.3.6-1build1) ... 161s Setting up libboost1.83-dev:s390x (1.83.0-4.2ubuntu1) ... 161s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 162s Setting up libtk8.6:s390x (8.6.16-1) ... 162s Setting up libpango-1.0-0:s390x (1.56.3-1) ... 162s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 162s Setting up libcairo2:s390x (1.18.4-1) ... 162s Setting up gcc-14-s390x-linux-gnu (14.2.0-22ubuntu1) ... 162s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 162s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 162s Setting up g++-14-s390x-linux-gnu (14.2.0-22ubuntu1) ... 162s Setting up cpp (4:14.2.0-1ubuntu1) ... 162s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ... 162s Setting up libpangoft2-1.0-0:s390x (1.56.3-1) ... 162s Setting up libpangocairo-1.0-0:s390x (1.56.3-1) ... 162s Setting up gfortran-14-s390x-linux-gnu (14.2.0-22ubuntu1) ... 162s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 162s Setting up gcc-14 (14.2.0-22ubuntu1) ... 162s Setting up r-base-core (4.5.0-3) ... 162s Creating config file /etc/R/Renviron with new version 162s Setting up r-cran-crayon (1.5.3-1) ... 162s Setting up r-cran-futile.options (1.0.1-3build1) ... 162s Setting up r-cran-lattice (0.22-7-1) ... 162s Setting up r-cran-formatr (1.14-2) ... 162s Setting up r-cran-xml (3.99-0.18-1) ... 162s Setting up r-cran-statmod (1.5.0-1) ... 162s Setting up g++-14 (14.2.0-22ubuntu1) ... 162s Setting up r-cran-rjson (0.2.23-1) ... 162s Setting up r-cran-r6 (2.6.1-1) ... 162s Setting up gfortran-14 (14.2.0-22ubuntu1) ... 162s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 162s Setting up r-cran-bh (1.84.0-1) ... 162s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 162s Setting up r-cran-codetools (0.2-20-1) ... 162s Setting up r-bioc-biocgenerics (0.52.0-2) ... 162s Setting up r-cran-rlang (1.1.5-3) ... 162s Setting up r-cran-matrixstats (1.5.0-1) ... 162s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 162s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 162s Setting up r-cran-sys (3.4.3-1) ... 162s Setting up r-cran-plogr (0.2.0-3build1) ... 162s Setting up r-cran-mime (0.12-2) ... 162s Setting up r-cran-abind (1.4-8-1) ... 162s Setting up r-cran-yaml (2.3.10-1) ... 162s Setting up r-cran-lambda.r (1.2.4-2build1) ... 162s Setting up r-cran-dbi (1.2.3-1) ... 162s Setting up r-cran-snow (1:0.4.4-2) ... 162s Setting up r-cran-glue (1.8.0-1) ... 162s Setting up r-cran-bit (4.6.0+dfsg-1) ... 162s Setting up r-cran-xtable (1:1.8-4-2) ... 162s Setting up r-cran-cli (3.6.4-1) ... 162s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 162s Setting up r-cran-bitops (1.0-9-1) ... 162s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 162s Setting up gcc (4:14.2.0-1ubuntu1) ... 162s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 162s Setting up r-cran-askpass (1.2.1-1) ... 162s Setting up r-cran-fastmap (1.2.0-1) ... 162s Setting up r-cran-png (0.1-8-1build2) ... 162s Setting up r-bioc-biobase (2.66.0-2) ... 162s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 162s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 162s Setting up r-cran-cpp11 (0.5.2-1) ... 162s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 162s Setting up r-cran-runit (0.4.33-1) ... 162s Setting up r-cran-futile.logger (1.4.3-4build1) ... 162s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 162s Setting up r-cran-matrix (1.7-3-1) ... 162s Setting up g++ (4:14.2.0-1ubuntu1) ... 162s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 162s Setting up r-cran-cachem (1.1.0-1) ... 162s Setting up build-essential (12.12ubuntu1) ... 162s Setting up r-bioc-iranges (2.40.1-3) ... 162s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 162s Setting up r-cran-restfulr (0.0.15-1) ... 162s Setting up r-cran-vctrs (0.6.5-1) ... 162s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 162s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 162s Setting up r-bioc-biocparallel (1.40.0-2) ... 162s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 162s Setting up r-cran-survival (3.8-3-1) ... 162s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 162s Setting up gfortran (4:14.2.0-1ubuntu1) ... 162s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 162s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 162s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 162s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 162s Setting up r-cran-httr (1.4.7+dfsg-1) ... 162s Setting up r-cran-memoise (2.0.1-1) ... 162s Setting up r-cran-blob (1.2.4-1) ... 162s Setting up r-bioc-xvector (0.46.0-2) ... 162s Setting up r-cran-rsqlite (2.3.9-1) ... 162s Setting up r-base-dev (4.5.0-3) ... 162s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 162s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 162s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 162s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 162s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 162s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 162s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 162s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 162s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 162s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 162s Setting up r-bioc-annotationdbi (1.68.0-2) ... 162s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 162s Setting up r-bioc-genefilter (1.88.0-2) ... 162s Setting up r-bioc-genomicalignments (1.42.0-2) ... 162s Setting up r-bioc-org.hs.eg.db (3.20.0-3) ... 162s Setting up r-bioc-rtracklayer (1.66.0-2) ... 162s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 162s Setting up r-bioc-bsgenome (1.74.0-2) ... 162s Processing triggers for libc-bin (2.41-6ubuntu1) ... 162s Processing triggers for man-db (2.13.0-1) ... 167s Processing triggers for install-info (7.1.1-1) ... 169s autopkgtest [21:57:46]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 169s autopkgtest [21:57:46]: test pkg-r-autopkgtest: [----------------------- 169s Test: Try to load the R library rtracklayer 170s 170s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" 170s Copyright (C) 2025 The R Foundation for Statistical Computing 170s Platform: s390x-ibm-linux-gnu 170s 170s R is free software and comes with ABSOLUTELY NO WARRANTY. 170s You are welcome to redistribute it under certain conditions. 170s Type 'license()' or 'licence()' for distribution details. 170s 170s R is a collaborative project with many contributors. 170s Type 'contributors()' for more information and 170s 'citation()' on how to cite R or R packages in publications. 170s 170s Type 'demo()' for some demos, 'help()' for on-line help, or 170s 'help.start()' for an HTML browser interface to help. 170s Type 'q()' to quit R. 170s 170s > library('rtracklayer') 170s Loading required package: GenomicRanges 170s Loading required package: stats4 170s Loading required package: BiocGenerics 170s 170s Attaching package: ‘BiocGenerics’ 170s 170s The following objects are masked from ‘package:stats’: 170s 170s IQR, mad, sd, var, xtabs 170s 170s The following objects are masked from ‘package:base’: 170s 170s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 170s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 170s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 170s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 170s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 170s table, tapply, union, unique, unsplit, which.max, which.min 170s 170s Loading required package: S4Vectors 170s 170s Attaching package: ‘S4Vectors’ 170s 170s The following object is masked from ‘package:utils’: 170s 170s findMatches 170s 170s The following objects are masked from ‘package:base’: 170s 170s expand.grid, I, unname 170s 170s Loading required package: IRanges 172s Loading required package: GenomeInfoDb 184s > 184s Other tests are currently unsupported! 184s They will be progressively added. 184s autopkgtest [21:58:01]: test pkg-r-autopkgtest: -----------------------] 185s pkg-r-autopkgtest PASS 185s autopkgtest [21:58:02]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 185s autopkgtest [21:58:02]: @@@@@@@@@@@@@@@@@@@@ summary 185s pkg-r-autopkgtest PASS 202s nova [W] Using flock in prodstack6-s390x 202s Creating nova instance adt-questing-s390x-r-bioc-rtracklayer-20250502-215457-juju-7f2275-prod-proposed-migration-environment-21-aea12721-8518-4c67-afda-f15491898f97 from image adt/ubuntu-questing-s390x-server-20250502.img (UUID 632ecfca-a19d-4f3a-af48-b7883fa0ccf2)... 202s nova [W] Timed out waiting for f357ba38-669d-4944-84b4-a1a06495bb54 to get deleted.