0s autopkgtest [11:58:13]: starting date and time: 2025-05-06 11:58:13+0000 0s autopkgtest [11:58:13]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [11:58:13]: host juju-7f2275-prod-proposed-migration-environment-21; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ycsa5rst/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:nlme --apt-upgrade r-bioc-qusage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=nlme/3.1.168-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-21@bos03-s390x-12.secgroup --name adt-questing-s390x-r-bioc-qusage-20250506-114536-juju-7f2275-prod-proposed-migration-environment-21-37e85363-7c2c-4c85-bb5e-544cb18cbfbc --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-21 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 71s autopkgtest [11:59:24]: testbed dpkg architecture: s390x 72s autopkgtest [11:59:25]: testbed apt version: 3.0.0 72s autopkgtest [11:59:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 72s autopkgtest [11:59:25]: testbed release detected to be: None 73s autopkgtest [11:59:26]: updating testbed package index (apt update) 73s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 73s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 73s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 74s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 74s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [27.3 kB] 74s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [595 kB] 74s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [72.4 kB] 74s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [136 kB] 74s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [612 kB] 74s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [15.0 kB] 74s Fetched 1567 kB in 1s (1782 kB/s) 75s Reading package lists... 75s autopkgtest [11:59:28]: upgrading testbed (apt dist-upgrade and autopurge) 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 76s Starting 2 pkgProblemResolver with broken count: 0 76s Done 76s Entering ResolveByKeep 76s 76s Calculating upgrade... 76s The following packages will be upgraded: 76s dhcpcd-base dirmngr gir1.2-glib-2.0 gnupg gnupg-l10n gnupg-utils gpg 76s gpg-agent gpg-wks-client gpgconf gpgsm gpgv keyboxd libglib2.0-0t64 76s libglib2.0-data libnuma1 libperl5.40 libpython3.12-minimal 76s libpython3.12-stdlib libpython3.12t64 libsemanage-common libsemanage2 76s libx11-6 libx11-data libxml2 numactl openssh-client openssh-server 76s openssh-sftp-server perl perl-base perl-modules-5.40 python3-dbus 76s python3-wadllib 76s 34 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Need to get 23.7 MB of archives. 76s After this operation, 243 kB disk space will be freed. 76s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x libperl5.40 s390x 5.40.1-3 [4972 kB] 77s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x perl s390x 5.40.1-3 [262 kB] 77s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x perl-base s390x 5.40.1-3 [1954 kB] 77s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x perl-modules-5.40 all 5.40.1-3 [3217 kB] 77s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x openssh-sftp-server s390x 1:9.9p1-3ubuntu3.1 [38.2 kB] 77s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x openssh-server s390x 1:9.9p1-3ubuntu3.1 [552 kB] 77s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x openssh-client s390x 1:9.9p1-3ubuntu3.1 [954 kB] 77s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libsemanage-common all 3.8.1-1 [7826 B] 77s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x libsemanage2 s390x 3.8.1-1 [99.9 kB] 77s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x gpg-wks-client s390x 2.4.4-2ubuntu24 [75.6 kB] 77s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x dirmngr s390x 2.4.4-2ubuntu24 [341 kB] 77s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x gpgsm s390x 2.4.4-2ubuntu24 [244 kB] 77s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x gnupg-utils s390x 2.4.4-2ubuntu24 [116 kB] 77s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x gpg-agent s390x 2.4.4-2ubuntu24 [240 kB] 77s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x gpg s390x 2.4.4-2ubuntu24 [591 kB] 77s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x gpgconf s390x 2.4.4-2ubuntu24 [110 kB] 77s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x gnupg all 2.4.4-2ubuntu24 [359 kB] 77s Get:18 http://ftpmaster.internal/ubuntu questing/main s390x keyboxd s390x 2.4.4-2ubuntu24 [82.0 kB] 77s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x gpgv s390x 2.4.4-2ubuntu24 [164 kB] 77s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x dhcpcd-base s390x 1:10.1.0-10 [220 kB] 77s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x gir1.2-glib-2.0 s390x 2.84.1-2 [182 kB] 77s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x libglib2.0-0t64 s390x 2.84.1-2 [1587 kB] 77s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x libglib2.0-data all 2.84.1-2 [53.2 kB] 77s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x libxml2 s390x 2.12.7+dfsg+really2.9.14-0.4ubuntu0.1 [816 kB] 77s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x python3-dbus s390x 1.4.0-1 [102 kB] 77s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x libnuma1 s390x 2.0.19-1 [24.6 kB] 77s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libx11-data all 2:1.8.12-1 [116 kB] 77s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libx11-6 s390x 2:1.8.12-1 [671 kB] 77s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x numactl s390x 2.0.19-1 [39.3 kB] 77s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x gnupg-l10n all 2.4.4-2ubuntu24 [66.8 kB] 77s Get:31 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x libpython3.12t64 s390x 3.12.10-1 [2509 kB] 77s Get:32 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x libpython3.12-stdlib s390x 3.12.10-1 [2049 kB] 77s Get:33 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x libpython3.12-minimal s390x 3.12.10-1 [836 kB] 77s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x python3-wadllib all 2.0.0-3 [36.3 kB] 78s Preconfiguring packages ... 78s Fetched 23.7 MB in 1s (17.3 MB/s) 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81479 files and directories currently installed.) 78s Preparing to unpack .../libperl5.40_5.40.1-3_s390x.deb ... 78s Unpacking libperl5.40:s390x (5.40.1-3) over (5.40.1-2) ... 78s Preparing to unpack .../perl_5.40.1-3_s390x.deb ... 78s Unpacking perl (5.40.1-3) over (5.40.1-2) ... 78s Preparing to unpack .../perl-base_5.40.1-3_s390x.deb ... 78s Unpacking perl-base (5.40.1-3) over (5.40.1-2) ... 78s Setting up perl-base (5.40.1-3) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81479 files and directories currently installed.) 78s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 78s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2) ... 78s Preparing to unpack .../openssh-sftp-server_1%3a9.9p1-3ubuntu3.1_s390x.deb ... 78s Unpacking openssh-sftp-server (1:9.9p1-3ubuntu3.1) over (1:9.9p1-3ubuntu3) ... 78s Preparing to unpack .../openssh-server_1%3a9.9p1-3ubuntu3.1_s390x.deb ... 78s Unpacking openssh-server (1:9.9p1-3ubuntu3.1) over (1:9.9p1-3ubuntu3) ... 78s Preparing to unpack .../openssh-client_1%3a9.9p1-3ubuntu3.1_s390x.deb ... 78s Unpacking openssh-client (1:9.9p1-3ubuntu3.1) over (1:9.9p1-3ubuntu3) ... 79s Preparing to unpack .../libsemanage-common_3.8.1-1_all.deb ... 79s Unpacking libsemanage-common (3.8.1-1) over (3.7-2.1build1) ... 79s Setting up libsemanage-common (3.8.1-1) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81479 files and directories currently installed.) 79s Preparing to unpack .../libsemanage2_3.8.1-1_s390x.deb ... 79s Unpacking libsemanage2:s390x (3.8.1-1) over (3.7-2.1build1) ... 79s Setting up libsemanage2:s390x (3.8.1-1) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81479 files and directories currently installed.) 79s Preparing to unpack .../0-gpg-wks-client_2.4.4-2ubuntu24_s390x.deb ... 79s Unpacking gpg-wks-client (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Preparing to unpack .../1-dirmngr_2.4.4-2ubuntu24_s390x.deb ... 79s Unpacking dirmngr (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Preparing to unpack .../2-gpgsm_2.4.4-2ubuntu24_s390x.deb ... 79s Unpacking gpgsm (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Preparing to unpack .../3-gnupg-utils_2.4.4-2ubuntu24_s390x.deb ... 79s Unpacking gnupg-utils (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Preparing to unpack .../4-gpg-agent_2.4.4-2ubuntu24_s390x.deb ... 79s Unpacking gpg-agent (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Preparing to unpack .../5-gpg_2.4.4-2ubuntu24_s390x.deb ... 79s Unpacking gpg (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Preparing to unpack .../6-gpgconf_2.4.4-2ubuntu24_s390x.deb ... 79s Unpacking gpgconf (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Preparing to unpack .../7-gnupg_2.4.4-2ubuntu24_all.deb ... 79s Unpacking gnupg (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Preparing to unpack .../8-keyboxd_2.4.4-2ubuntu24_s390x.deb ... 79s Unpacking keyboxd (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Preparing to unpack .../9-gpgv_2.4.4-2ubuntu24_s390x.deb ... 79s Unpacking gpgv (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Setting up gpgv (2.4.4-2ubuntu24) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81479 files and directories currently installed.) 79s Preparing to unpack .../00-dhcpcd-base_1%3a10.1.0-10_s390x.deb ... 79s Unpacking dhcpcd-base (1:10.1.0-10) over (1:10.1.0-8) ... 79s Preparing to unpack .../01-gir1.2-glib-2.0_2.84.1-2_s390x.deb ... 79s Unpacking gir1.2-glib-2.0:s390x (2.84.1-2) over (2.84.1-1) ... 79s Preparing to unpack .../02-libglib2.0-0t64_2.84.1-2_s390x.deb ... 79s Unpacking libglib2.0-0t64:s390x (2.84.1-2) over (2.84.1-1) ... 79s Preparing to unpack .../03-libglib2.0-data_2.84.1-2_all.deb ... 79s Unpacking libglib2.0-data (2.84.1-2) over (2.84.1-1) ... 79s Preparing to unpack .../04-libxml2_2.12.7+dfsg+really2.9.14-0.4ubuntu0.1_s390x.deb ... 79s Unpacking libxml2:s390x (2.12.7+dfsg+really2.9.14-0.4ubuntu0.1) over (2.12.7+dfsg+really2.9.14-0.4) ... 79s Preparing to unpack .../05-python3-dbus_1.4.0-1_s390x.deb ... 79s Unpacking python3-dbus (1.4.0-1) over (1.3.2-5build5) ... 79s Preparing to unpack .../06-libnuma1_2.0.19-1_s390x.deb ... 79s Unpacking libnuma1:s390x (2.0.19-1) over (2.0.18-1build1) ... 79s Preparing to unpack .../07-libx11-data_2%3a1.8.12-1_all.deb ... 79s Unpacking libx11-data (2:1.8.12-1) over (2:1.8.10-2) ... 79s Preparing to unpack .../08-libx11-6_2%3a1.8.12-1_s390x.deb ... 79s Unpacking libx11-6:s390x (2:1.8.12-1) over (2:1.8.10-2) ... 79s Preparing to unpack .../09-numactl_2.0.19-1_s390x.deb ... 79s Unpacking numactl (2.0.19-1) over (2.0.18-1build1) ... 79s Preparing to unpack .../10-gnupg-l10n_2.4.4-2ubuntu24_all.deb ... 79s Unpacking gnupg-l10n (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ... 79s Preparing to unpack .../11-libpython3.12t64_3.12.10-1_s390x.deb ... 79s Unpacking libpython3.12t64:s390x (3.12.10-1) over (3.12.8-3) ... 79s Preparing to unpack .../12-libpython3.12-stdlib_3.12.10-1_s390x.deb ... 79s Unpacking libpython3.12-stdlib:s390x (3.12.10-1) over (3.12.8-3) ... 79s Preparing to unpack .../13-libpython3.12-minimal_3.12.10-1_s390x.deb ... 79s Unpacking libpython3.12-minimal:s390x (3.12.10-1) over (3.12.8-3) ... 79s Preparing to unpack .../14-python3-wadllib_2.0.0-3_all.deb ... 79s Unpacking python3-wadllib (2.0.0-3) over (2.0.0-2) ... 79s Setting up openssh-client (1:9.9p1-3ubuntu3.1) ... 79s Setting up libpython3.12-minimal:s390x (3.12.10-1) ... 79s Setting up libglib2.0-0t64:s390x (2.84.1-2) ... 79s No schema files found: doing nothing. 79s Setting up libglib2.0-data (2.84.1-2) ... 79s Setting up libx11-data (2:1.8.12-1) ... 79s Setting up gnupg-l10n (2.4.4-2ubuntu24) ... 79s Setting up python3-wadllib (2.0.0-3) ... 79s Setting up dhcpcd-base (1:10.1.0-10) ... 79s Installing new version of config file /etc/dhcpcd.conf ... 79s Setting up gir1.2-glib-2.0:s390x (2.84.1-2) ... 79s Setting up libnuma1:s390x (2.0.19-1) ... 79s Setting up perl-modules-5.40 (5.40.1-3) ... 79s Setting up gpgconf (2.4.4-2ubuntu24) ... 79s Setting up libx11-6:s390x (2:1.8.12-1) ... 79s Setting up libxml2:s390x (2.12.7+dfsg+really2.9.14-0.4ubuntu0.1) ... 79s Setting up gpg (2.4.4-2ubuntu24) ... 79s Setting up gnupg-utils (2.4.4-2ubuntu24) ... 79s Setting up openssh-sftp-server (1:9.9p1-3ubuntu3.1) ... 79s Setting up python3-dbus (1.4.0-1) ... 80s Setting up gpg-agent (2.4.4-2ubuntu24) ... 80s Setting up libpython3.12-stdlib:s390x (3.12.10-1) ... 80s Setting up numactl (2.0.19-1) ... 80s Setting up openssh-server (1:9.9p1-3ubuntu3.1) ... 81s Setting up gpgsm (2.4.4-2ubuntu24) ... 81s Setting up libpython3.12t64:s390x (3.12.10-1) ... 81s Setting up libperl5.40:s390x (5.40.1-3) ... 81s Setting up dirmngr (2.4.4-2ubuntu24) ... 81s Setting up perl (5.40.1-3) ... 81s Setting up keyboxd (2.4.4-2ubuntu24) ... 81s Setting up gnupg (2.4.4-2ubuntu24) ... 81s Setting up gpg-wks-client (2.4.4-2ubuntu24) ... 81s Processing triggers for ufw (0.36.2-9) ... 81s Processing triggers for man-db (2.13.1-1) ... 82s Processing triggers for install-info (7.1.1-1) ... 82s Processing triggers for libc-bin (2.41-6ubuntu1) ... 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s Starting pkgProblemResolver with broken count: 0 83s Starting 2 pkgProblemResolver with broken count: 0 83s Done 83s Solving dependencies... 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s autopkgtest [11:59:36]: rebooting testbed after setup commands that affected boot 105s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 112s autopkgtest [12:00:05]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr 6 13:39:00 UTC 2025 114s autopkgtest [12:00:07]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-qusage 116s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (dsc) [2129 B] 116s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (tar) [10.1 MB] 116s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (diff) [3532 B] 116s gpgv: Signature made Sun Jan 12 02:53:53 2025 UTC 116s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 116s gpgv: issuer "crusoe@debian.org" 116s gpgv: Can't check signature: No public key 116s dpkg-source: warning: cannot verify inline signature for ./r-bioc-qusage_2.40.0-2.dsc: no acceptable signature found 116s autopkgtest [12:00:09]: testing package r-bioc-qusage version 2.40.0-2 117s autopkgtest [12:00:10]: build not needed 118s autopkgtest [12:00:11]: test pkg-r-autopkgtest: preparing testbed 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 119s The following NEW packages will be installed: 119s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 119s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 119s g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 119s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 119s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8 119s libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev 119s libdeflate0 libfftw3-double3 libfontconfig1 libfreetype6 libgcc-14-dev 119s libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 119s libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 119s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 119s liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 119s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 119s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 119s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data 119s libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 119s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf 119s pkgconf-bin r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics 119s r-bioc-limma r-bioc-qusage r-cran-emmeans r-cran-estimability r-cran-fftw 119s r-cran-lattice r-cran-mvtnorm r-cran-nlme r-cran-numderiv r-cran-statmod 119s unzip x11-common xdg-utils zip zlib1g-dev 119s 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded. 119s Need to get 145 MB of archives. 119s After this operation, 388 MB of additional disk space will be used. 119s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x libisl23 s390x 0.27-1 [704 kB] 120s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 120s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [9572 kB] 120s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x cpp-14 s390x 14.2.0-19ubuntu2 [1024 B] 120s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 120s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 120s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x libcc1-0 s390x 15-20250404-0ubuntu1 [49.6 kB] 120s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB] 120s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x libitm1 s390x 15-20250404-0ubuntu1 [31.2 kB] 120s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libasan8 s390x 15-20250404-0ubuntu1 [2966 kB] 120s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x libubsan1 s390x 15-20250404-0ubuntu1 [1210 kB] 120s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x libgcc-14-dev s390x 14.2.0-19ubuntu2 [1037 kB] 120s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [18.7 MB] 121s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x gcc-14 s390x 14.2.0-19ubuntu2 [529 kB] 121s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 121s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 121s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x libstdc++-14-dev s390x 14.2.0-19ubuntu2 [2614 kB] 121s Get:18 http://ftpmaster.internal/ubuntu questing/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [11.0 MB] 121s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x g++-14 s390x 14.2.0-19ubuntu2 [23.0 kB] 121s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 121s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 121s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x build-essential s390x 12.12ubuntu1 [5090 B] 121s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 121s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 121s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 121s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 121s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 121s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 121s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig s390x 2.15.0-2.2ubuntu1 [191 kB] 121s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB] 121s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran-14-dev s390x 14.2.0-19ubuntu2 [653 kB] 121s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [10.3 MB] 122s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-14 s390x 14.2.0-19ubuntu2 [14.2 kB] 122s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 122s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 122s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 122s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 122s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 122s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 122s Get:40 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 122s Get:41 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 122s Get:42 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 122s Get:43 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 122s Get:44 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB] 122s Get:45 http://ftpmaster.internal/ubuntu questing/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 122s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-2 [46.0 kB] 122s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate-dev s390x 1.23-2 [51.9 kB] 122s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build1 [511 kB] 122s Get:49 http://ftpmaster.internal/ubuntu questing/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 122s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 122s Get:51 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 122s Get:52 http://ftpmaster.internal/ubuntu questing/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 122s Get:53 http://ftpmaster.internal/ubuntu questing/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 123s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 123s Get:55 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 123s Get:56 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 123s Get:57 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 123s Get:58 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 123s Get:59 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 123s Get:60 http://ftpmaster.internal/ubuntu questing/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 124s Get:61 http://ftpmaster.internal/ubuntu questing/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 124s Get:62 http://ftpmaster.internal/ubuntu questing/main s390x libthai-data all 0.1.29-2build1 [158 kB] 124s Get:63 http://ftpmaster.internal/ubuntu questing/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 124s Get:64 http://ftpmaster.internal/ubuntu questing/main s390x libpango-1.0-0 s390x 1.56.3-1 [254 kB] 124s Get:65 http://ftpmaster.internal/ubuntu questing/main s390x libpangoft2-1.0-0 s390x 1.56.3-1 [50.5 kB] 124s Get:66 http://ftpmaster.internal/ubuntu questing/main s390x libpangocairo-1.0-0 s390x 1.56.3-1 [28.2 kB] 124s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 124s Get:68 http://ftpmaster.internal/ubuntu questing/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 124s Get:69 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 124s Get:70 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 124s Get:71 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 124s Get:72 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 124s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 124s Get:74 http://ftpmaster.internal/ubuntu questing/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 124s Get:75 http://ftpmaster.internal/ubuntu questing/main s390x libpng-dev s390x 1.6.47-1.1 [278 kB] 124s Get:76 http://ftpmaster.internal/ubuntu questing/main s390x libreadline-dev s390x 8.2-6 [187 kB] 124s Get:77 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 124s Get:78 http://ftpmaster.internal/ubuntu questing/main s390x libsm6 s390x 2:1.2.6-1 [18.3 kB] 124s Get:79 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 124s Get:80 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 124s Get:81 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 124s Get:82 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.7.0-3ubuntu1 [219 kB] 124s Get:83 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 124s Get:84 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 124s Get:85 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 124s Get:86 http://ftpmaster.internal/ubuntu questing/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 124s Get:87 http://ftpmaster.internal/ubuntu questing/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 124s Get:88 http://ftpmaster.internal/ubuntu questing/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 124s Get:89 http://ftpmaster.internal/ubuntu questing/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 124s Get:90 http://ftpmaster.internal/ubuntu questing/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 128s Get:91 http://ftpmaster.internal/ubuntu questing/main s390x liblzma-dev s390x 5.6.4-1ubuntu1 [184 kB] 128s Get:92 http://ftpmaster.internal/ubuntu questing/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 128s Get:93 http://ftpmaster.internal/ubuntu questing/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 128s Get:94 http://ftpmaster.internal/ubuntu questing/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 128s Get:95 http://ftpmaster.internal/ubuntu questing/universe s390x r-base-dev all 4.4.3-1 [4176 B] 128s Get:96 http://ftpmaster.internal/ubuntu questing/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 128s Get:97 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 129s Get:98 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB] 129s Get:99 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB] 129s Get:100 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-limma s390x 3.62.2+dfsg-1 [1973 kB] 129s Get:101 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 130s Get:102 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-cran-nlme s390x 3.1.168-1 [2315 kB] 130s Get:103 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-estimability all 1.5.1-1 [50.9 kB] 130s Get:104 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-numderiv all 2016.8-1.1-3 [115 kB] 130s Get:105 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-mvtnorm s390x 1.3-3-1 [924 kB] 130s Get:106 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-emmeans all 1.10.7+dfsg-1 [1665 kB] 131s Get:107 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-fftw s390x 1.0-9-1 [19.8 kB] 131s Get:108 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-qusage all 2.40.0-2 [10.2 MB] 132s Preconfiguring packages ... 133s Fetched 145 MB in 13s (11.1 MB/s) 133s Selecting previously unselected package libisl23:s390x. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81479 files and directories currently installed.) 133s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ... 133s Unpacking libisl23:s390x (0.27-1) ... 133s Selecting previously unselected package libmpc3:s390x. 133s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ... 133s Unpacking libmpc3:s390x (1.3.1-1build2) ... 133s Selecting previously unselected package cpp-14-s390x-linux-gnu. 133s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 133s Unpacking cpp-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 133s Selecting previously unselected package cpp-14. 133s Preparing to unpack .../003-cpp-14_14.2.0-19ubuntu2_s390x.deb ... 133s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 133s Selecting previously unselected package cpp-s390x-linux-gnu. 133s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 133s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 133s Selecting previously unselected package cpp. 133s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 133s Unpacking cpp (4:14.2.0-1ubuntu1) ... 133s Selecting previously unselected package libcc1-0:s390x. 133s Preparing to unpack .../006-libcc1-0_15-20250404-0ubuntu1_s390x.deb ... 133s Unpacking libcc1-0:s390x (15-20250404-0ubuntu1) ... 133s Selecting previously unselected package libgomp1:s390x. 133s Preparing to unpack .../007-libgomp1_15-20250404-0ubuntu1_s390x.deb ... 133s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ... 133s Selecting previously unselected package libitm1:s390x. 133s Preparing to unpack .../008-libitm1_15-20250404-0ubuntu1_s390x.deb ... 133s Unpacking libitm1:s390x (15-20250404-0ubuntu1) ... 133s Selecting previously unselected package libasan8:s390x. 133s Preparing to unpack .../009-libasan8_15-20250404-0ubuntu1_s390x.deb ... 133s Unpacking libasan8:s390x (15-20250404-0ubuntu1) ... 133s Selecting previously unselected package libubsan1:s390x. 133s Preparing to unpack .../010-libubsan1_15-20250404-0ubuntu1_s390x.deb ... 133s Unpacking libubsan1:s390x (15-20250404-0ubuntu1) ... 133s Selecting previously unselected package libgcc-14-dev:s390x. 133s Preparing to unpack .../011-libgcc-14-dev_14.2.0-19ubuntu2_s390x.deb ... 133s Unpacking libgcc-14-dev:s390x (14.2.0-19ubuntu2) ... 133s Selecting previously unselected package gcc-14-s390x-linux-gnu. 133s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 133s Unpacking gcc-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 133s Selecting previously unselected package gcc-14. 133s Preparing to unpack .../013-gcc-14_14.2.0-19ubuntu2_s390x.deb ... 133s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 133s Selecting previously unselected package gcc-s390x-linux-gnu. 133s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 133s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 133s Selecting previously unselected package gcc. 133s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 133s Unpacking gcc (4:14.2.0-1ubuntu1) ... 133s Selecting previously unselected package libstdc++-14-dev:s390x. 133s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-19ubuntu2_s390x.deb ... 133s Unpacking libstdc++-14-dev:s390x (14.2.0-19ubuntu2) ... 133s Selecting previously unselected package g++-14-s390x-linux-gnu. 133s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 133s Unpacking g++-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 134s Selecting previously unselected package g++-14. 134s Preparing to unpack .../018-g++-14_14.2.0-19ubuntu2_s390x.deb ... 134s Unpacking g++-14 (14.2.0-19ubuntu2) ... 134s Selecting previously unselected package g++-s390x-linux-gnu. 134s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 134s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 134s Selecting previously unselected package g++. 134s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 134s Unpacking g++ (4:14.2.0-1ubuntu1) ... 134s Selecting previously unselected package build-essential. 134s Preparing to unpack .../021-build-essential_12.12ubuntu1_s390x.deb ... 134s Unpacking build-essential (12.12ubuntu1) ... 134s Selecting previously unselected package dctrl-tools. 134s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ... 134s Unpacking dctrl-tools (2.24-3build3) ... 134s Selecting previously unselected package libfreetype6:s390x. 134s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 134s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 134s Selecting previously unselected package fonts-dejavu-mono. 134s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... 134s Unpacking fonts-dejavu-mono (2.37-8) ... 134s Selecting previously unselected package fonts-dejavu-core. 134s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... 134s Unpacking fonts-dejavu-core (2.37-8) ... 134s Selecting previously unselected package fontconfig-config. 134s Preparing to unpack .../026-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 134s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 134s Selecting previously unselected package libfontconfig1:s390x. 134s Preparing to unpack .../027-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 134s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 134s Selecting previously unselected package fontconfig. 134s Preparing to unpack .../028-fontconfig_2.15.0-2.2ubuntu1_s390x.deb ... 134s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 134s Selecting previously unselected package libgfortran5:s390x. 134s Preparing to unpack .../029-libgfortran5_15-20250404-0ubuntu1_s390x.deb ... 134s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ... 134s Selecting previously unselected package libgfortran-14-dev:s390x. 134s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-19ubuntu2_s390x.deb ... 134s Unpacking libgfortran-14-dev:s390x (14.2.0-19ubuntu2) ... 134s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 134s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 134s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 134s Selecting previously unselected package gfortran-14. 134s Preparing to unpack .../032-gfortran-14_14.2.0-19ubuntu2_s390x.deb ... 134s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 134s Selecting previously unselected package gfortran-s390x-linux-gnu. 134s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 134s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 134s Selecting previously unselected package gfortran. 134s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 134s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 134s Selecting previously unselected package icu-devtools. 134s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ... 134s Unpacking icu-devtools (76.1-1ubuntu2) ... 134s Selecting previously unselected package libblas3:s390x. 134s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ... 134s Unpacking libblas3:s390x (3.12.1-2) ... 134s Selecting previously unselected package libblas-dev:s390x. 134s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ... 134s Unpacking libblas-dev:s390x (3.12.1-2) ... 134s Selecting previously unselected package libbz2-dev:s390x. 134s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ... 134s Unpacking libbz2-dev:s390x (1.0.8-6) ... 134s Selecting previously unselected package libpixman-1-0:s390x. 134s Preparing to unpack .../039-libpixman-1-0_0.44.0-3_s390x.deb ... 134s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 134s Selecting previously unselected package libxcb-render0:s390x. 134s Preparing to unpack .../040-libxcb-render0_1.17.0-2_s390x.deb ... 134s Unpacking libxcb-render0:s390x (1.17.0-2) ... 134s Selecting previously unselected package libxcb-shm0:s390x. 134s Preparing to unpack .../041-libxcb-shm0_1.17.0-2_s390x.deb ... 134s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 134s Selecting previously unselected package libxrender1:s390x. 134s Preparing to unpack .../042-libxrender1_1%3a0.9.12-1_s390x.deb ... 134s Unpacking libxrender1:s390x (1:0.9.12-1) ... 134s Selecting previously unselected package libcairo2:s390x. 134s Preparing to unpack .../043-libcairo2_1.18.4-1_s390x.deb ... 134s Unpacking libcairo2:s390x (1.18.4-1) ... 134s Selecting previously unselected package libdatrie1:s390x. 134s Preparing to unpack .../044-libdatrie1_0.2.13-3build1_s390x.deb ... 134s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 134s Selecting previously unselected package libdeflate0:s390x. 134s Preparing to unpack .../045-libdeflate0_1.23-2_s390x.deb ... 134s Unpacking libdeflate0:s390x (1.23-2) ... 134s Selecting previously unselected package libdeflate-dev:s390x. 134s Preparing to unpack .../046-libdeflate-dev_1.23-2_s390x.deb ... 134s Unpacking libdeflate-dev:s390x (1.23-2) ... 134s Selecting previously unselected package libfftw3-double3:s390x. 134s Preparing to unpack .../047-libfftw3-double3_3.3.10-2fakesync1build1_s390x.deb ... 134s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 134s Selecting previously unselected package libgraphite2-3:s390x. 134s Preparing to unpack .../048-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 134s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 134s Selecting previously unselected package libharfbuzz0b:s390x. 134s Preparing to unpack .../049-libharfbuzz0b_10.2.0-1_s390x.deb ... 134s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 134s Selecting previously unselected package x11-common. 134s Preparing to unpack .../050-x11-common_1%3a7.7+23ubuntu4_all.deb ... 134s Unpacking x11-common (1:7.7+23ubuntu4) ... 134s Selecting previously unselected package libice6:s390x. 134s Preparing to unpack .../051-libice6_2%3a1.1.1-1_s390x.deb ... 134s Unpacking libice6:s390x (2:1.1.1-1) ... 134s Selecting previously unselected package libicu-dev:s390x. 134s Preparing to unpack .../052-libicu-dev_76.1-1ubuntu2_s390x.deb ... 134s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 134s Selecting previously unselected package libjpeg-turbo8:s390x. 134s Preparing to unpack .../053-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 134s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 134s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 134s Preparing to unpack .../054-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 134s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 134s Selecting previously unselected package libjpeg8:s390x. 134s Preparing to unpack .../055-libjpeg8_8c-2ubuntu11_s390x.deb ... 134s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 134s Selecting previously unselected package libjpeg8-dev:s390x. 134s Preparing to unpack .../056-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 134s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 134s Selecting previously unselected package libjpeg-dev:s390x. 134s Preparing to unpack .../057-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 134s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 134s Selecting previously unselected package liblapack3:s390x. 134s Preparing to unpack .../058-liblapack3_3.12.1-2_s390x.deb ... 134s Unpacking liblapack3:s390x (3.12.1-2) ... 135s Selecting previously unselected package liblapack-dev:s390x. 135s Preparing to unpack .../059-liblapack-dev_3.12.1-2_s390x.deb ... 135s Unpacking liblapack-dev:s390x (3.12.1-2) ... 135s Selecting previously unselected package libncurses-dev:s390x. 135s Preparing to unpack .../060-libncurses-dev_6.5+20250216-2_s390x.deb ... 135s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 135s Selecting previously unselected package libthai-data. 135s Preparing to unpack .../061-libthai-data_0.1.29-2build1_all.deb ... 135s Unpacking libthai-data (0.1.29-2build1) ... 135s Selecting previously unselected package libthai0:s390x. 135s Preparing to unpack .../062-libthai0_0.1.29-2build1_s390x.deb ... 135s Unpacking libthai0:s390x (0.1.29-2build1) ... 135s Selecting previously unselected package libpango-1.0-0:s390x. 135s Preparing to unpack .../063-libpango-1.0-0_1.56.3-1_s390x.deb ... 135s Unpacking libpango-1.0-0:s390x (1.56.3-1) ... 135s Selecting previously unselected package libpangoft2-1.0-0:s390x. 135s Preparing to unpack .../064-libpangoft2-1.0-0_1.56.3-1_s390x.deb ... 135s Unpacking libpangoft2-1.0-0:s390x (1.56.3-1) ... 135s Selecting previously unselected package libpangocairo-1.0-0:s390x. 135s Preparing to unpack .../065-libpangocairo-1.0-0_1.56.3-1_s390x.deb ... 135s Unpacking libpangocairo-1.0-0:s390x (1.56.3-1) ... 135s Selecting previously unselected package libpaper2:s390x. 135s Preparing to unpack .../066-libpaper2_2.2.5-0.3_s390x.deb ... 135s Unpacking libpaper2:s390x (2.2.5-0.3) ... 135s Selecting previously unselected package libpaper-utils. 135s Preparing to unpack .../067-libpaper-utils_2.2.5-0.3_s390x.deb ... 135s Unpacking libpaper-utils (2.2.5-0.3) ... 135s Selecting previously unselected package libpcre2-16-0:s390x. 135s Preparing to unpack .../068-libpcre2-16-0_10.45-1_s390x.deb ... 135s Unpacking libpcre2-16-0:s390x (10.45-1) ... 135s Selecting previously unselected package libpcre2-32-0:s390x. 135s Preparing to unpack .../069-libpcre2-32-0_10.45-1_s390x.deb ... 135s Unpacking libpcre2-32-0:s390x (10.45-1) ... 135s Selecting previously unselected package libpcre2-posix3:s390x. 135s Preparing to unpack .../070-libpcre2-posix3_10.45-1_s390x.deb ... 135s Unpacking libpcre2-posix3:s390x (10.45-1) ... 135s Selecting previously unselected package libpcre2-dev:s390x. 135s Preparing to unpack .../071-libpcre2-dev_10.45-1_s390x.deb ... 135s Unpacking libpcre2-dev:s390x (10.45-1) ... 135s Selecting previously unselected package libpkgconf3:s390x. 135s Preparing to unpack .../072-libpkgconf3_1.8.1-4_s390x.deb ... 135s Unpacking libpkgconf3:s390x (1.8.1-4) ... 135s Selecting previously unselected package zlib1g-dev:s390x. 135s Preparing to unpack .../073-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 135s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 135s Selecting previously unselected package libpng-dev:s390x. 135s Preparing to unpack .../074-libpng-dev_1.6.47-1.1_s390x.deb ... 135s Unpacking libpng-dev:s390x (1.6.47-1.1) ... 135s Selecting previously unselected package libreadline-dev:s390x. 135s Preparing to unpack .../075-libreadline-dev_8.2-6_s390x.deb ... 135s Unpacking libreadline-dev:s390x (8.2-6) ... 135s Selecting previously unselected package libsharpyuv0:s390x. 135s Preparing to unpack .../076-libsharpyuv0_1.5.0-0.1_s390x.deb ... 135s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 135s Selecting previously unselected package libsm6:s390x. 135s Preparing to unpack .../077-libsm6_2%3a1.2.6-1_s390x.deb ... 135s Unpacking libsm6:s390x (2:1.2.6-1) ... 135s Selecting previously unselected package libtcl8.6:s390x. 135s Preparing to unpack .../078-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 135s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 135s Selecting previously unselected package libjbig0:s390x. 135s Preparing to unpack .../079-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 135s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 135s Selecting previously unselected package libwebp7:s390x. 135s Preparing to unpack .../080-libwebp7_1.5.0-0.1_s390x.deb ... 135s Unpacking libwebp7:s390x (1.5.0-0.1) ... 135s Selecting previously unselected package libtiff6:s390x. 135s Preparing to unpack .../081-libtiff6_4.7.0-3ubuntu1_s390x.deb ... 135s Unpacking libtiff6:s390x (4.7.0-3ubuntu1) ... 135s Selecting previously unselected package libxft2:s390x. 135s Preparing to unpack .../082-libxft2_2.3.6-1build1_s390x.deb ... 135s Unpacking libxft2:s390x (2.3.6-1build1) ... 135s Selecting previously unselected package libxss1:s390x. 135s Preparing to unpack .../083-libxss1_1%3a1.2.3-1build3_s390x.deb ... 135s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 135s Selecting previously unselected package libtk8.6:s390x. 135s Preparing to unpack .../084-libtk8.6_8.6.16-1_s390x.deb ... 135s Unpacking libtk8.6:s390x (8.6.16-1) ... 135s Selecting previously unselected package libxt6t64:s390x. 135s Preparing to unpack .../085-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 135s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 135s Selecting previously unselected package zip. 135s Preparing to unpack .../086-zip_3.0-14ubuntu2_s390x.deb ... 135s Unpacking zip (3.0-14ubuntu2) ... 135s Selecting previously unselected package unzip. 135s Preparing to unpack .../087-unzip_6.0-28ubuntu6_s390x.deb ... 135s Unpacking unzip (6.0-28ubuntu6) ... 135s Selecting previously unselected package xdg-utils. 135s Preparing to unpack .../088-xdg-utils_1.2.1-2ubuntu1_all.deb ... 135s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 135s Selecting previously unselected package r-base-core. 135s Preparing to unpack .../089-r-base-core_4.4.3-1_s390x.deb ... 135s Unpacking r-base-core (4.4.3-1) ... 135s Selecting previously unselected package liblzma-dev:s390x. 135s Preparing to unpack .../090-liblzma-dev_5.6.4-1ubuntu1_s390x.deb ... 135s Unpacking liblzma-dev:s390x (5.6.4-1ubuntu1) ... 135s Selecting previously unselected package pkgconf-bin. 135s Preparing to unpack .../091-pkgconf-bin_1.8.1-4_s390x.deb ... 135s Unpacking pkgconf-bin (1.8.1-4) ... 135s Selecting previously unselected package pkgconf:s390x. 135s Preparing to unpack .../092-pkgconf_1.8.1-4_s390x.deb ... 135s Unpacking pkgconf:s390x (1.8.1-4) ... 135s Selecting previously unselected package libtirpc-dev:s390x. 135s Preparing to unpack .../093-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 135s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 135s Selecting previously unselected package r-base-dev. 135s Preparing to unpack .../094-r-base-dev_4.4.3-1_all.deb ... 135s Unpacking r-base-dev (4.4.3-1) ... 135s Selecting previously unselected package pkg-r-autopkgtest. 135s Preparing to unpack .../095-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 135s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 135s Selecting previously unselected package r-bioc-biocgenerics. 135s Preparing to unpack .../096-r-bioc-biocgenerics_0.52.0-2_all.deb ... 135s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 135s Selecting previously unselected package r-bioc-biobase. 135s Preparing to unpack .../097-r-bioc-biobase_2.66.0-2_s390x.deb ... 135s Unpacking r-bioc-biobase (2.66.0-2) ... 135s Selecting previously unselected package r-cran-statmod. 135s Preparing to unpack .../098-r-cran-statmod_1.5.0-1_s390x.deb ... 135s Unpacking r-cran-statmod (1.5.0-1) ... 135s Selecting previously unselected package r-bioc-limma. 135s Preparing to unpack .../099-r-bioc-limma_3.62.2+dfsg-1_s390x.deb ... 135s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 135s Selecting previously unselected package r-cran-lattice. 135s Preparing to unpack .../100-r-cran-lattice_0.22-6-1_s390x.deb ... 135s Unpacking r-cran-lattice (0.22-6-1) ... 135s Selecting previously unselected package r-cran-nlme. 135s Preparing to unpack .../101-r-cran-nlme_3.1.168-1_s390x.deb ... 135s Unpacking r-cran-nlme (3.1.168-1) ... 135s Selecting previously unselected package r-cran-estimability. 135s Preparing to unpack .../102-r-cran-estimability_1.5.1-1_all.deb ... 135s Unpacking r-cran-estimability (1.5.1-1) ... 135s Selecting previously unselected package r-cran-numderiv. 136s Preparing to unpack .../103-r-cran-numderiv_2016.8-1.1-3_all.deb ... 136s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 136s Selecting previously unselected package r-cran-mvtnorm. 136s Preparing to unpack .../104-r-cran-mvtnorm_1.3-3-1_s390x.deb ... 136s Unpacking r-cran-mvtnorm (1.3-3-1) ... 136s Selecting previously unselected package r-cran-emmeans. 136s Preparing to unpack .../105-r-cran-emmeans_1.10.7+dfsg-1_all.deb ... 136s Unpacking r-cran-emmeans (1.10.7+dfsg-1) ... 136s Selecting previously unselected package r-cran-fftw. 136s Preparing to unpack .../106-r-cran-fftw_1.0-9-1_s390x.deb ... 136s Unpacking r-cran-fftw (1.0-9-1) ... 136s Selecting previously unselected package r-bioc-qusage. 136s Preparing to unpack .../107-r-bioc-qusage_2.40.0-2_all.deb ... 136s Unpacking r-bioc-qusage (2.40.0-2) ... 136s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 136s Setting up libpixman-1-0:s390x (0.44.0-3) ... 136s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 136s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 136s Setting up libxrender1:s390x (1:0.9.12-1) ... 136s Setting up libdatrie1:s390x (0.2.13-3build1) ... 136s Setting up libxcb-render0:s390x (1.17.0-2) ... 136s Setting up unzip (6.0-28ubuntu6) ... 136s Setting up x11-common (1:7.7+23ubuntu4) ... 136s Setting up libdeflate0:s390x (1.23-2) ... 136s Setting up libxcb-shm0:s390x (1.17.0-2) ... 136s Setting up libreadline-dev:s390x (8.2-6) ... 136s Setting up libgomp1:s390x (15-20250404-0ubuntu1) ... 136s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 136s Setting up libpcre2-16-0:s390x (10.45-1) ... 136s Setting up zip (3.0-14ubuntu2) ... 136s Setting up libpcre2-32-0:s390x (10.45-1) ... 136s Setting up libblas3:s390x (3.12.1-2) ... 136s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 136s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 136s Setting up libpkgconf3:s390x (1.8.1-4) ... 136s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 136s Setting up fonts-dejavu-mono (2.37-8) ... 136s Setting up libmpc3:s390x (1.3.1-1build2) ... 136s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 136s Setting up icu-devtools (76.1-1ubuntu2) ... 136s Setting up fonts-dejavu-core (2.37-8) ... 136s Setting up pkgconf-bin (1.8.1-4) ... 136s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 136s Setting up libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 136s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ... 136s Setting up libwebp7:s390x (1.5.0-0.1) ... 136s Setting up liblzma-dev:s390x (5.6.4-1ubuntu1) ... 136s Setting up libubsan1:s390x (15-20250404-0ubuntu1) ... 136s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 136s Setting up libpcre2-posix3:s390x (10.45-1) ... 136s Setting up libasan8:s390x (15-20250404-0ubuntu1) ... 136s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 136s Setting up libthai-data (0.1.29-2build1) ... 136s Setting up libxss1:s390x (1:1.2.3-1build3) ... 136s Setting up libpaper2:s390x (2.2.5-0.3) ... 136s Setting up libisl23:s390x (0.27-1) ... 136s Setting up libdeflate-dev:s390x (1.23-2) ... 136s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 136s Setting up xdg-utils (1.2.1-2ubuntu1) ... 136s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 136s Setting up libcc1-0:s390x (15-20250404-0ubuntu1) ... 136s Setting up libblas-dev:s390x (3.12.1-2) ... 136s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 136s Setting up dctrl-tools (2.24-3build3) ... 136s Setting up libitm1:s390x (15-20250404-0ubuntu1) ... 136s Setting up libbz2-dev:s390x (1.0.8-6) ... 136s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 136s Setting up libice6:s390x (2:1.1.1-1) ... 136s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 136s Setting up liblapack3:s390x (3.12.1-2) ... 136s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 136s Setting up libpcre2-dev:s390x (10.45-1) ... 136s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 136s Setting up libpng-dev:s390x (1.6.47-1.1) ... 136s Setting up libpaper-utils (2.2.5-0.3) ... 136s Setting up pkgconf:s390x (1.8.1-4) ... 136s Setting up libthai0:s390x (0.1.29-2build1) ... 136s Setting up liblapack-dev:s390x (3.12.1-2) ... 136s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 136s Setting up cpp-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 136s Setting up cpp-14 (14.2.0-19ubuntu2) ... 136s Setting up libtiff6:s390x (4.7.0-3ubuntu1) ... 136s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 136s Setting up libgcc-14-dev:s390x (14.2.0-19ubuntu2) ... 136s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 136s Setting up libstdc++-14-dev:s390x (14.2.0-19ubuntu2) ... 136s Setting up libsm6:s390x (2:1.2.6-1) ... 136s Setting up libgfortran-14-dev:s390x (14.2.0-19ubuntu2) ... 136s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 138s Regenerating fonts cache... done. 138s Setting up libxft2:s390x (2.3.6-1build1) ... 138s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 138s Setting up libtk8.6:s390x (8.6.16-1) ... 138s Setting up libpango-1.0-0:s390x (1.56.3-1) ... 138s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 138s Setting up libcairo2:s390x (1.18.4-1) ... 138s Setting up gcc-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 138s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 138s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 138s Setting up g++-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 138s Setting up cpp (4:14.2.0-1ubuntu1) ... 138s Setting up libpangoft2-1.0-0:s390x (1.56.3-1) ... 138s Setting up libpangocairo-1.0-0:s390x (1.56.3-1) ... 138s Setting up gfortran-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 138s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 138s Setting up gcc-14 (14.2.0-19ubuntu2) ... 138s Setting up r-base-core (4.4.3-1) ... 138s Creating config file /etc/R/Renviron with new version 138s Setting up r-cran-lattice (0.22-6-1) ... 138s Setting up r-cran-nlme (3.1.168-1) ... 138s Setting up r-cran-statmod (1.5.0-1) ... 138s Setting up r-cran-fftw (1.0-9-1) ... 138s Setting up g++-14 (14.2.0-19ubuntu2) ... 138s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 138s Setting up r-cran-numderiv (2016.8-1.1-3) ... 138s Setting up r-cran-estimability (1.5.1-1) ... 138s Setting up r-bioc-biocgenerics (0.52.0-2) ... 138s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 138s Setting up gcc (4:14.2.0-1ubuntu1) ... 138s Setting up r-bioc-biobase (2.66.0-2) ... 138s Setting up r-cran-mvtnorm (1.3-3-1) ... 138s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 138s Setting up g++ (4:14.2.0-1ubuntu1) ... 138s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 138s Setting up build-essential (12.12ubuntu1) ... 138s Setting up gfortran (4:14.2.0-1ubuntu1) ... 138s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 138s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 138s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 138s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 138s Setting up r-cran-emmeans (1.10.7+dfsg-1) ... 138s Setting up r-base-dev (4.4.3-1) ... 138s Setting up r-bioc-qusage (2.40.0-2) ... 138s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 138s Processing triggers for libc-bin (2.41-6ubuntu1) ... 138s Processing triggers for man-db (2.13.1-1) ... 138s Processing triggers for install-info (7.1.1-1) ... 139s autopkgtest [12:00:32]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 139s autopkgtest [12:00:32]: test pkg-r-autopkgtest: [----------------------- 140s Test: Try to load the R library qusage 140s 140s R version 4.4.3 (2025-02-28) -- "Trophy Case" 140s Copyright (C) 2025 The R Foundation for Statistical Computing 140s Platform: s390x-ibm-linux-gnu 140s 140s R is free software and comes with ABSOLUTELY NO WARRANTY. 140s You are welcome to redistribute it under certain conditions. 140s Type 'license()' or 'licence()' for distribution details. 140s 140s R is a collaborative project with many contributors. 140s Type 'contributors()' for more information and 140s 'citation()' on how to cite R or R packages in publications. 140s 140s Type 'demo()' for some demos, 'help()' for on-line help, or 140s 'help.start()' for an HTML browser interface to help. 140s Type 'q()' to quit R. 140s 140s > library('qusage') 140s Loading required package: limma 140s Error: package or namespace load failed for ‘qusage’ in dyn.load(file, DLLpath = DLLpath, ...): 140s unable to load shared object '/usr/lib/R/library/nlme/libs/nlme.so': 140s /usr/lib/R/library/nlme/libs/nlme.so: undefined symbol: R_chk_memcpy 140s Execution halted 140s autopkgtest [12:00:33]: test pkg-r-autopkgtest: -----------------------] 141s autopkgtest [12:00:34]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 141s pkg-r-autopkgtest FAIL non-zero exit status 1 141s autopkgtest [12:00:34]: @@@@@@@@@@@@@@@@@@@@ summary 141s pkg-r-autopkgtest FAIL non-zero exit status 1 146s nova [W] Using flock in prodstack6-s390x 146s Creating nova instance adt-questing-s390x-r-bioc-qusage-20250506-114536-juju-7f2275-prod-proposed-migration-environment-21-37e85363-7c2c-4c85-bb5e-544cb18cbfbc from image adt/ubuntu-questing-s390x-server-20250505.img (UUID 235ae1f0-b461-4906-9827-678093d41c66)... 146s nova [W] Timed out waiting for 234ad5df-e538-4cdb-a023-de517658ca57 to get deleted.