0s autopkgtest [11:34:23]: starting date and time: 2025-05-03 11:34:23+0000
  0s autopkgtest [11:34:23]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [11:34:23]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.81ddvd4u/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-pwalign --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-15.secgroup --name adt-questing-s390x-r-bioc-pwalign-20250503-113423-juju-7f2275-prod-proposed-migration-environment-15-b58cde55-9863-4f59-8eb7-0946c00e187b --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
 74s autopkgtest [11:35:37]: testbed dpkg architecture: s390x
 74s autopkgtest [11:35:37]: testbed apt version: 3.0.0
 74s autopkgtest [11:35:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 75s autopkgtest [11:35:38]: testbed release detected to be: None
 75s autopkgtest [11:35:38]: updating testbed package index (apt update)
 76s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
 76s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
 76s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
 76s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
 76s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.6 kB]
 76s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1655 kB]
 76s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [155 kB]
 76s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [174 kB]
 76s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1239 kB]
 76s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [13.6 kB]
 77s Fetched 3393 kB in 1s (2926 kB/s)
 77s Reading package lists...
 78s autopkgtest [11:35:41]: upgrading testbed (apt dist-upgrade and autopurge)
 78s Reading package lists...
 78s Building dependency tree...
 78s Reading state information...
 78s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 78s Starting 2 pkgProblemResolver with broken count: 0
 78s Done
 79s Entering ResolveByKeep
 79s 
 79s Calculating upgrade...
 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 79s Reading package lists...
 79s Building dependency tree...
 79s Reading state information...
 79s Starting pkgProblemResolver with broken count: 0
 79s Starting 2 pkgProblemResolver with broken count: 0
 79s Done
 80s Solving dependencies...
 80s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 82s autopkgtest [11:35:45]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr  6 13:39:00 UTC 2025
 82s autopkgtest [11:35:45]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-pwalign
 84s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-pwalign 1.2.0-2 (dsc) [2182 B]
 84s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-pwalign 1.2.0-2 (tar) [327 kB]
 84s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-pwalign 1.2.0-2 (diff) [5492 B]
 84s gpgv: Signature made Sun Jan 12 19:21:49 2025 UTC
 84s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
 84s gpgv:                issuer "crusoe@debian.org"
 84s gpgv: Can't check signature: No public key
 84s dpkg-source: warning: cannot verify inline signature for ./r-bioc-pwalign_1.2.0-2.dsc: no acceptable signature found
 84s autopkgtest [11:35:47]: testing package r-bioc-pwalign version 1.2.0-2
 85s autopkgtest [11:35:48]: build not needed
 87s autopkgtest [11:35:50]: test pkg-r-autopkgtest: preparing testbed
 87s Reading package lists...
 87s Building dependency tree...
 87s Reading state information...
 87s Starting pkgProblemResolver with broken count: 5
 88s Starting 2 pkgProblemResolver with broken count: 5
 88s Investigating (0) r-base-core:s390x < none -> 4.5.0-3 @un puN Ib >
 88s Broken r-base-core:s390x Breaks on r-bioc-pwalign:s390x < none -> 1.2.0-2 @un puN Ib > (< 1.2.0-3~)
 88s   Considering r-bioc-pwalign:s390x -1 as a solution to r-base-core:s390x 20
 88s Investigating (0) r-bioc-xvector:s390x < none -> 0.46.0-2 @un puN Ib >
 88s Broken r-bioc-xvector:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.23.9)
 88s   Considering r-bioc-iranges:s390x 1 as a solution to r-bioc-xvector:s390x 1
 88s   Considering r-bioc-iranges:s390x 1 as a solution to r-bioc-xvector:s390x 1
 88s Investigating (0) r-bioc-genomeinfodb:s390x < none -> 1.42.3+dfsg-1 @un puN Ib >
 88s Broken r-bioc-genomeinfodb:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.13.12)
 88s   Considering r-bioc-iranges:s390x 1 as a solution to r-bioc-genomeinfodb:s390x 0
 88s   Considering r-bioc-iranges:s390x 1 as a solution to r-bioc-genomeinfodb:s390x 0
 88s Investigating (0) r-bioc-biostrings:s390x < none -> 2.74.1+dfsg-2 @un puN Ib >
 88s Broken r-bioc-biostrings:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.31.2)
 88s   Considering r-bioc-iranges:s390x 1 as a solution to r-bioc-biostrings:s390x 0
 88s   Considering r-bioc-iranges:s390x 1 as a solution to r-bioc-biostrings:s390x 0
 88s Investigating (0) r-bioc-pwalign:s390x < none -> 1.2.0-2 @un puN Ib >
 88s Broken r-bioc-pwalign:s390x Depends on r-bioc-iranges:s390x < none @un pH >
 88s   Considering r-bioc-iranges:s390x 1 as a solution to r-bioc-pwalign:s390x -1
 88s   Considering r-bioc-iranges:s390x 1 as a solution to r-bioc-pwalign:s390x -1
 88s Done
 88s Some packages could not be installed. This may mean that you have
 88s requested an impossible situation or if you are using the unstable
 88s distribution that some required packages have not yet been created
 88s or been moved out of Incoming.
 88s The following information may help to resolve the situation:
 88s 
 88s The following packages have unmet dependencies:
 88s  r-base-core : Breaks: r-bioc-pwalign (< 1.2.0-3~) but 1.2.0-2 is to be installed
 88s  r-bioc-biostrings : Depends: r-bioc-iranges (>= 2.31.2) but it is not installable
 88s  r-bioc-genomeinfodb : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable
 88s  r-bioc-pwalign : Depends: r-bioc-iranges but it is not installable
 88s  r-bioc-xvector : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
 88s E: Unable to correct problems, you have held broken packages.
 88s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed
 88s Reading package lists...
 88s Building dependency tree...
 88s Reading state information...
 88s Starting pkgProblemResolver with broken count: 0
 88s Starting 2 pkgProblemResolver with broken count: 0
 88s Done
 89s The following NEW packages will be installed:
 89s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
 89s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
 89s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
 89s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
 89s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
 89s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
 89s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
 89s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
 89s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
 89s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
 89s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
 89s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
 89s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
 89s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
 89s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
 89s   libxft2 libxrender1 libxss1 libxt6t64 libzstd-dev pkg-r-autopkgtest pkgconf
 89s   pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biostrings
 89s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-pwalign
 89s   r-bioc-s4vectors r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc
 89s   r-cran-askpass r-cran-crayon r-cran-curl r-cran-httr r-cran-jsonlite
 89s   r-cran-mime r-cran-openssl r-cran-r6 r-cran-runit r-cran-sys unzip
 89s   x11-common xdg-utils zip zlib1g-dev
 89s The following packages will be upgraded:
 89s   gcc-14-base gcc-15-base libatomic1 libgcc-s1 liblzma5 libstdc++6
 89s   libtirpc-common libtirpc3t64 libzstd1 xz-utils zstd
 89s 11 upgraded, 116 newly installed, 0 to remove and 101 not upgraded.
 89s Need to get 165 MB of archives.
 89s After this operation, 411 MB of additional disk space will be used.
 89s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-15-base s390x 15.1.0-2ubuntu1 [54.6 kB]
 89s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgcc-s1 s390x 15.1.0-2ubuntu1 [35.7 kB]
 89s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libatomic1 s390x 15.1.0-2ubuntu1 [9564 B]
 89s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libstdc++6 s390x 15.1.0-2ubuntu1 [906 kB]
 89s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main s390x liblzma5 s390x 5.8.1-1 [148 kB]
 89s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libzstd1 s390x 1.5.7+dfsg-1 [345 kB]
 89s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-14-base s390x 14.2.0-22ubuntu1 [55.1 kB]
 89s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libtirpc-common all 1.3.6+ds-1 [8198 B]
 89s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libtirpc3t64 s390x 1.3.6+ds-1 [84.9 kB]
 89s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/main s390x xz-utils s390x 5.8.1-1 [350 kB]
 89s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x libisl23 s390x 0.27-1 [704 kB]
 89s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
 89s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [9570 kB]
 90s Get:14 http://ftpmaster.internal/ubuntu questing-proposed/main s390x cpp-14 s390x 14.2.0-22ubuntu1 [1028 B]
 90s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
 90s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
 90s Get:17 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libcc1-0 s390x 15.1.0-2ubuntu1 [49.8 kB]
 90s Get:18 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgomp1 s390x 15.1.0-2ubuntu1 [153 kB]
 90s Get:19 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libitm1 s390x 15.1.0-2ubuntu1 [31.1 kB]
 90s Get:20 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libasan8 s390x 15.1.0-2ubuntu1 [2970 kB]
 90s Get:21 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libubsan1 s390x 15.1.0-2ubuntu1 [1210 kB]
 90s Get:22 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgcc-14-dev s390x 14.2.0-22ubuntu1 [1037 kB]
 90s Get:23 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [18.7 MB]
 91s Get:24 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-14 s390x 14.2.0-22ubuntu1 [536 kB]
 91s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
 91s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
 91s Get:27 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libstdc++-14-dev s390x 14.2.0-22ubuntu1 [2961 kB]
 91s Get:28 http://ftpmaster.internal/ubuntu questing-proposed/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [11.0 MB]
 91s Get:29 http://ftpmaster.internal/ubuntu questing-proposed/main s390x g++-14 s390x 14.2.0-22ubuntu1 [24.0 kB]
 91s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
 91s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
 91s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x build-essential s390x 12.12ubuntu1 [5090 B]
 91s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
 91s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
 91s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
 91s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
 91s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB]
 91s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB]
 91s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig s390x 2.15.0-2.2ubuntu1 [191 kB]
 91s Get:40 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgfortran5 s390x 15.1.0-2ubuntu1 [614 kB]
 91s Get:41 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgfortran-14-dev s390x 14.2.0-22ubuntu1 [653 kB]
 91s Get:42 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [10.3 MB]
 91s Get:43 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gfortran-14 s390x 14.2.0-22ubuntu1 [14.4 kB]
 91s Get:44 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
 91s Get:45 http://ftpmaster.internal/ubuntu questing/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
 91s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
 91s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB]
 91s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
 91s Get:49 http://ftpmaster.internal/ubuntu questing/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
 91s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
 92s Get:51 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
 92s Get:52 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
 92s Get:53 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB]
 92s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB]
 92s Get:55 http://ftpmaster.internal/ubuntu questing/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
 92s Get:56 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-2 [46.0 kB]
 92s Get:57 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate-dev s390x 1.23-2 [51.9 kB]
 92s Get:58 http://ftpmaster.internal/ubuntu questing/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
 92s Get:59 http://ftpmaster.internal/ubuntu questing/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
 92s Get:60 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB]
 92s Get:61 http://ftpmaster.internal/ubuntu questing/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
 92s Get:62 http://ftpmaster.internal/ubuntu questing/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
 92s Get:63 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
 92s Get:64 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
 92s Get:65 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
 92s Get:66 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
 92s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
 92s Get:68 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
 92s Get:69 http://ftpmaster.internal/ubuntu questing/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
 93s Get:70 http://ftpmaster.internal/ubuntu questing/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
 93s Get:71 http://ftpmaster.internal/ubuntu questing/main s390x libthai-data all 0.1.29-2build1 [158 kB]
 93s Get:72 http://ftpmaster.internal/ubuntu questing/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
 93s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x libpango-1.0-0 s390x 1.56.3-1 [254 kB]
 93s Get:74 http://ftpmaster.internal/ubuntu questing/main s390x libpangoft2-1.0-0 s390x 1.56.3-1 [50.5 kB]
 93s Get:75 http://ftpmaster.internal/ubuntu questing/main s390x libpangocairo-1.0-0 s390x 1.56.3-1 [28.2 kB]
 93s Get:76 http://ftpmaster.internal/ubuntu questing/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
 93s Get:77 http://ftpmaster.internal/ubuntu questing/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
 93s Get:78 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
 93s Get:79 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
 93s Get:80 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
 93s Get:81 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
 93s Get:82 http://ftpmaster.internal/ubuntu questing/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
 93s Get:83 http://ftpmaster.internal/ubuntu questing/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
 93s Get:84 http://ftpmaster.internal/ubuntu questing/main s390x libpng-dev s390x 1.6.47-1.1 [278 kB]
 93s Get:85 http://ftpmaster.internal/ubuntu questing/main s390x libreadline-dev s390x 8.2-6 [187 kB]
 93s Get:86 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
 93s Get:87 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libsm6 s390x 2:1.2.6-1 [18.3 kB]
 93s Get:88 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
 93s Get:89 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
 93s Get:90 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
 93s Get:91 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.7.0-3ubuntu1 [219 kB]
 93s Get:92 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
 93s Get:93 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
 93s Get:94 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
 93s Get:95 http://ftpmaster.internal/ubuntu questing/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
 93s Get:96 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libzstd-dev s390x 1.5.7+dfsg-1 [415 kB]
 93s Get:97 http://ftpmaster.internal/ubuntu questing/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
 93s Get:98 http://ftpmaster.internal/ubuntu questing/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
 93s Get:99 http://ftpmaster.internal/ubuntu questing/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
 93s Get:100 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-base-core s390x 4.5.0-3 [29.0 MB]
 94s Get:101 http://ftpmaster.internal/ubuntu questing-proposed/main s390x liblzma-dev s390x 5.8.1-1 [184 kB]
 94s Get:102 http://ftpmaster.internal/ubuntu questing/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
 94s Get:103 http://ftpmaster.internal/ubuntu questing/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
 94s Get:104 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libtirpc-dev s390x 1.3.6+ds-1 [196 kB]
 94s Get:105 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-base-dev all 4.5.0-3 [4188 B]
 94s Get:106 http://ftpmaster.internal/ubuntu questing/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
 94s Get:107 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
 95s Get:108 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB]
 95s Get:109 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-bioc-iranges s390x 2.40.1-3 [2300 kB]
 96s Get:110 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
 96s Get:111 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB]
 96s Get:112 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB]
 96s Get:113 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
 96s Get:114 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
 96s Get:115 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB]
 96s Get:116 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB]
 96s Get:117 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB]
 96s Get:118 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
 96s Get:119 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
 96s Get:120 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
 96s Get:121 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
 97s Get:122 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
 97s Get:123 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
 97s Get:124 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB]
 98s Get:125 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-bioc-pwalign s390x 1.2.0-3 [758 kB]
 98s Get:126 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-runit all 0.4.33-1 [377 kB]
 98s Get:127 http://ftpmaster.internal/ubuntu questing-proposed/main s390x zstd s390x 1.5.7+dfsg-1 [722 kB]
 98s Preconfiguring packages ...
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 99s Preparing to unpack .../gcc-15-base_15.1.0-2ubuntu1_s390x.deb ...
 99s Unpacking gcc-15-base:s390x (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ...
 99s Setting up gcc-15-base:s390x (15.1.0-2ubuntu1) ...
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 99s Preparing to unpack .../libgcc-s1_15.1.0-2ubuntu1_s390x.deb ...
 99s Unpacking libgcc-s1:s390x (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ...
 99s Setting up libgcc-s1:s390x (15.1.0-2ubuntu1) ...
 99s (Reading database ... 
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 99s Preparing to unpack .../libatomic1_15.1.0-2ubuntu1_s390x.deb ...
 99s Unpacking libatomic1:s390x (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ...
 99s Preparing to unpack .../libstdc++6_15.1.0-2ubuntu1_s390x.deb ...
 99s Unpacking libstdc++6:s390x (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ...
 99s Setting up libstdc++6:s390x (15.1.0-2ubuntu1) ...
 99s (Reading database ... 
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 99s Preparing to unpack .../liblzma5_5.8.1-1_s390x.deb ...
 99s Unpacking liblzma5:s390x (5.8.1-1) over (5.6.4-1ubuntu1) ...
 99s Setting up liblzma5:s390x (5.8.1-1) ...
 99s (Reading database ... 
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 99s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_s390x.deb ...
 99s Unpacking libzstd1:s390x (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ...
 99s Setting up libzstd1:s390x (1.5.7+dfsg-1) ...
 99s (Reading database ... 
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 99s Preparing to unpack .../000-gcc-14-base_14.2.0-22ubuntu1_s390x.deb ...
 99s Unpacking gcc-14-base:s390x (14.2.0-22ubuntu1) over (14.2.0-19ubuntu2) ...
 99s Preparing to unpack .../001-libtirpc-common_1.3.6+ds-1_all.deb ...
 99s Unpacking libtirpc-common (1.3.6+ds-1) over (1.3.4+ds-1.3) ...
 99s Preparing to unpack .../002-libtirpc3t64_1.3.6+ds-1_s390x.deb ...
 99s Unpacking libtirpc3t64:s390x (1.3.6+ds-1) over (1.3.4+ds-1.3) ...
 99s Preparing to unpack .../003-xz-utils_5.8.1-1_s390x.deb ...
 99s Unpacking xz-utils (5.8.1-1) over (5.6.4-1ubuntu1) ...
 99s Selecting previously unselected package libisl23:s390x.
 99s Preparing to unpack .../004-libisl23_0.27-1_s390x.deb ...
 99s Unpacking libisl23:s390x (0.27-1) ...
 99s Selecting previously unselected package libmpc3:s390x.
 99s Preparing to unpack .../005-libmpc3_1.3.1-1build2_s390x.deb ...
 99s Unpacking libmpc3:s390x (1.3.1-1build2) ...
 99s Selecting previously unselected package cpp-14-s390x-linux-gnu.
 99s Preparing to unpack .../006-cpp-14-s390x-linux-gnu_14.2.0-22ubuntu1_s390x.deb ...
 99s Unpacking cpp-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
 99s Selecting previously unselected package cpp-14.
 99s Preparing to unpack .../007-cpp-14_14.2.0-22ubuntu1_s390x.deb ...
 99s Unpacking cpp-14 (14.2.0-22ubuntu1) ...
 99s Selecting previously unselected package cpp-s390x-linux-gnu.
 99s Preparing to unpack .../008-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
 99s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
 99s Selecting previously unselected package cpp.
 99s Preparing to unpack .../009-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
 99s Unpacking cpp (4:14.2.0-1ubuntu1) ...
 99s Selecting previously unselected package libcc1-0:s390x.
 99s Preparing to unpack .../010-libcc1-0_15.1.0-2ubuntu1_s390x.deb ...
 99s Unpacking libcc1-0:s390x (15.1.0-2ubuntu1) ...
 99s Selecting previously unselected package libgomp1:s390x.
 99s Preparing to unpack .../011-libgomp1_15.1.0-2ubuntu1_s390x.deb ...
 99s Unpacking libgomp1:s390x (15.1.0-2ubuntu1) ...
 99s Selecting previously unselected package libitm1:s390x.
 99s Preparing to unpack .../012-libitm1_15.1.0-2ubuntu1_s390x.deb ...
 99s Unpacking libitm1:s390x (15.1.0-2ubuntu1) ...
 99s Selecting previously unselected package libasan8:s390x.
 99s Preparing to unpack .../013-libasan8_15.1.0-2ubuntu1_s390x.deb ...
 99s Unpacking libasan8:s390x (15.1.0-2ubuntu1) ...
 99s Selecting previously unselected package libubsan1:s390x.
 99s Preparing to unpack .../014-libubsan1_15.1.0-2ubuntu1_s390x.deb ...
 99s Unpacking libubsan1:s390x (15.1.0-2ubuntu1) ...
 99s Selecting previously unselected package libgcc-14-dev:s390x.
 99s Preparing to unpack .../015-libgcc-14-dev_14.2.0-22ubuntu1_s390x.deb ...
 99s Unpacking libgcc-14-dev:s390x (14.2.0-22ubuntu1) ...
 99s Selecting previously unselected package gcc-14-s390x-linux-gnu.
 99s Preparing to unpack .../016-gcc-14-s390x-linux-gnu_14.2.0-22ubuntu1_s390x.deb ...
 99s Unpacking gcc-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
100s Selecting previously unselected package gcc-14.
100s Preparing to unpack .../017-gcc-14_14.2.0-22ubuntu1_s390x.deb ...
100s Unpacking gcc-14 (14.2.0-22ubuntu1) ...
100s Selecting previously unselected package gcc-s390x-linux-gnu.
100s Preparing to unpack .../018-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
100s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
100s Selecting previously unselected package gcc.
100s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
100s Unpacking gcc (4:14.2.0-1ubuntu1) ...
100s Selecting previously unselected package libstdc++-14-dev:s390x.
100s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-22ubuntu1_s390x.deb ...
100s Unpacking libstdc++-14-dev:s390x (14.2.0-22ubuntu1) ...
100s Selecting previously unselected package g++-14-s390x-linux-gnu.
100s Preparing to unpack .../021-g++-14-s390x-linux-gnu_14.2.0-22ubuntu1_s390x.deb ...
100s Unpacking g++-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
100s Selecting previously unselected package g++-14.
100s Preparing to unpack .../022-g++-14_14.2.0-22ubuntu1_s390x.deb ...
100s Unpacking g++-14 (14.2.0-22ubuntu1) ...
100s Selecting previously unselected package g++-s390x-linux-gnu.
100s Preparing to unpack .../023-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
100s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
100s Selecting previously unselected package g++.
100s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
100s Unpacking g++ (4:14.2.0-1ubuntu1) ...
100s Selecting previously unselected package build-essential.
100s Preparing to unpack .../025-build-essential_12.12ubuntu1_s390x.deb ...
100s Unpacking build-essential (12.12ubuntu1) ...
100s Selecting previously unselected package dctrl-tools.
100s Preparing to unpack .../026-dctrl-tools_2.24-3build3_s390x.deb ...
100s Unpacking dctrl-tools (2.24-3build3) ...
100s Selecting previously unselected package libfreetype6:s390x.
100s Preparing to unpack .../027-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
100s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
100s Selecting previously unselected package fonts-dejavu-mono.
100s Preparing to unpack .../028-fonts-dejavu-mono_2.37-8_all.deb ...
100s Unpacking fonts-dejavu-mono (2.37-8) ...
100s Selecting previously unselected package fonts-dejavu-core.
100s Preparing to unpack .../029-fonts-dejavu-core_2.37-8_all.deb ...
100s Unpacking fonts-dejavu-core (2.37-8) ...
100s Selecting previously unselected package fontconfig-config.
100s Preparing to unpack .../030-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ...
100s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
100s Selecting previously unselected package libfontconfig1:s390x.
100s Preparing to unpack .../031-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ...
100s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ...
100s Selecting previously unselected package fontconfig.
100s Preparing to unpack .../032-fontconfig_2.15.0-2.2ubuntu1_s390x.deb ...
100s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
100s Selecting previously unselected package libgfortran5:s390x.
100s Preparing to unpack .../033-libgfortran5_15.1.0-2ubuntu1_s390x.deb ...
100s Unpacking libgfortran5:s390x (15.1.0-2ubuntu1) ...
100s Selecting previously unselected package libgfortran-14-dev:s390x.
100s Preparing to unpack .../034-libgfortran-14-dev_14.2.0-22ubuntu1_s390x.deb ...
100s Unpacking libgfortran-14-dev:s390x (14.2.0-22ubuntu1) ...
100s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
100s Preparing to unpack .../035-gfortran-14-s390x-linux-gnu_14.2.0-22ubuntu1_s390x.deb ...
100s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
100s Selecting previously unselected package gfortran-14.
100s Preparing to unpack .../036-gfortran-14_14.2.0-22ubuntu1_s390x.deb ...
100s Unpacking gfortran-14 (14.2.0-22ubuntu1) ...
100s Selecting previously unselected package gfortran-s390x-linux-gnu.
101s Preparing to unpack .../037-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
101s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
101s Selecting previously unselected package gfortran.
101s Preparing to unpack .../038-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
101s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
101s Selecting previously unselected package icu-devtools.
101s Preparing to unpack .../039-icu-devtools_76.1-1ubuntu2_s390x.deb ...
101s Unpacking icu-devtools (76.1-1ubuntu2) ...
101s Selecting previously unselected package libblas3:s390x.
101s Preparing to unpack .../040-libblas3_3.12.1-2_s390x.deb ...
101s Unpacking libblas3:s390x (3.12.1-2) ...
101s Selecting previously unselected package libblas-dev:s390x.
101s Preparing to unpack .../041-libblas-dev_3.12.1-2_s390x.deb ...
101s Unpacking libblas-dev:s390x (3.12.1-2) ...
101s Selecting previously unselected package libbz2-dev:s390x.
101s Preparing to unpack .../042-libbz2-dev_1.0.8-6_s390x.deb ...
101s Unpacking libbz2-dev:s390x (1.0.8-6) ...
101s Selecting previously unselected package libpixman-1-0:s390x.
101s Preparing to unpack .../043-libpixman-1-0_0.44.0-3_s390x.deb ...
101s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
101s Selecting previously unselected package libxcb-render0:s390x.
101s Preparing to unpack .../044-libxcb-render0_1.17.0-2_s390x.deb ...
101s Unpacking libxcb-render0:s390x (1.17.0-2) ...
101s Selecting previously unselected package libxcb-shm0:s390x.
101s Preparing to unpack .../045-libxcb-shm0_1.17.0-2_s390x.deb ...
101s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
101s Selecting previously unselected package libxrender1:s390x.
101s Preparing to unpack .../046-libxrender1_1%3a0.9.12-1_s390x.deb ...
101s Unpacking libxrender1:s390x (1:0.9.12-1) ...
101s Selecting previously unselected package libcairo2:s390x.
101s Preparing to unpack .../047-libcairo2_1.18.4-1_s390x.deb ...
101s Unpacking libcairo2:s390x (1.18.4-1) ...
101s Selecting previously unselected package libdatrie1:s390x.
101s Preparing to unpack .../048-libdatrie1_0.2.13-3build1_s390x.deb ...
101s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
101s Selecting previously unselected package libdeflate0:s390x.
101s Preparing to unpack .../049-libdeflate0_1.23-2_s390x.deb ...
101s Unpacking libdeflate0:s390x (1.23-2) ...
101s Selecting previously unselected package libdeflate-dev:s390x.
101s Preparing to unpack .../050-libdeflate-dev_1.23-2_s390x.deb ...
101s Unpacking libdeflate-dev:s390x (1.23-2) ...
101s Selecting previously unselected package libgraphite2-3:s390x.
101s Preparing to unpack .../051-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
101s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
101s Selecting previously unselected package libharfbuzz0b:s390x.
101s Preparing to unpack .../052-libharfbuzz0b_10.2.0-1_s390x.deb ...
101s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
101s Selecting previously unselected package x11-common.
101s Preparing to unpack .../053-x11-common_1%3a7.7+23ubuntu4_all.deb ...
101s Unpacking x11-common (1:7.7+23ubuntu4) ...
101s Selecting previously unselected package libice6:s390x.
101s Preparing to unpack .../054-libice6_2%3a1.1.1-1_s390x.deb ...
101s Unpacking libice6:s390x (2:1.1.1-1) ...
101s Selecting previously unselected package libicu-dev:s390x.
101s Preparing to unpack .../055-libicu-dev_76.1-1ubuntu2_s390x.deb ...
101s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
101s Selecting previously unselected package libjpeg-turbo8:s390x.
101s Preparing to unpack .../056-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
101s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
101s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
101s Preparing to unpack .../057-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
101s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
101s Selecting previously unselected package libjpeg8:s390x.
101s Preparing to unpack .../058-libjpeg8_8c-2ubuntu11_s390x.deb ...
101s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
101s Selecting previously unselected package libjpeg8-dev:s390x.
101s Preparing to unpack .../059-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
101s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
101s Selecting previously unselected package libjpeg-dev:s390x.
101s Preparing to unpack .../060-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
101s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
101s Selecting previously unselected package liblapack3:s390x.
101s Preparing to unpack .../061-liblapack3_3.12.1-2_s390x.deb ...
101s Unpacking liblapack3:s390x (3.12.1-2) ...
101s Selecting previously unselected package liblapack-dev:s390x.
101s Preparing to unpack .../062-liblapack-dev_3.12.1-2_s390x.deb ...
101s Unpacking liblapack-dev:s390x (3.12.1-2) ...
101s Selecting previously unselected package libncurses-dev:s390x.
101s Preparing to unpack .../063-libncurses-dev_6.5+20250216-2_s390x.deb ...
101s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
101s Selecting previously unselected package libthai-data.
101s Preparing to unpack .../064-libthai-data_0.1.29-2build1_all.deb ...
101s Unpacking libthai-data (0.1.29-2build1) ...
101s Selecting previously unselected package libthai0:s390x.
101s Preparing to unpack .../065-libthai0_0.1.29-2build1_s390x.deb ...
101s Unpacking libthai0:s390x (0.1.29-2build1) ...
101s Selecting previously unselected package libpango-1.0-0:s390x.
101s Preparing to unpack .../066-libpango-1.0-0_1.56.3-1_s390x.deb ...
101s Unpacking libpango-1.0-0:s390x (1.56.3-1) ...
101s Selecting previously unselected package libpangoft2-1.0-0:s390x.
101s Preparing to unpack .../067-libpangoft2-1.0-0_1.56.3-1_s390x.deb ...
101s Unpacking libpangoft2-1.0-0:s390x (1.56.3-1) ...
101s Selecting previously unselected package libpangocairo-1.0-0:s390x.
101s Preparing to unpack .../068-libpangocairo-1.0-0_1.56.3-1_s390x.deb ...
101s Unpacking libpangocairo-1.0-0:s390x (1.56.3-1) ...
101s Selecting previously unselected package libpaper2:s390x.
101s Preparing to unpack .../069-libpaper2_2.2.5-0.3_s390x.deb ...
101s Unpacking libpaper2:s390x (2.2.5-0.3) ...
101s Selecting previously unselected package libpaper-utils.
101s Preparing to unpack .../070-libpaper-utils_2.2.5-0.3_s390x.deb ...
101s Unpacking libpaper-utils (2.2.5-0.3) ...
101s Selecting previously unselected package libpcre2-16-0:s390x.
101s Preparing to unpack .../071-libpcre2-16-0_10.45-1_s390x.deb ...
101s Unpacking libpcre2-16-0:s390x (10.45-1) ...
101s Selecting previously unselected package libpcre2-32-0:s390x.
101s Preparing to unpack .../072-libpcre2-32-0_10.45-1_s390x.deb ...
101s Unpacking libpcre2-32-0:s390x (10.45-1) ...
101s Selecting previously unselected package libpcre2-posix3:s390x.
101s Preparing to unpack .../073-libpcre2-posix3_10.45-1_s390x.deb ...
101s Unpacking libpcre2-posix3:s390x (10.45-1) ...
101s Selecting previously unselected package libpcre2-dev:s390x.
101s Preparing to unpack .../074-libpcre2-dev_10.45-1_s390x.deb ...
101s Unpacking libpcre2-dev:s390x (10.45-1) ...
101s Selecting previously unselected package libpkgconf3:s390x.
101s Preparing to unpack .../075-libpkgconf3_1.8.1-4_s390x.deb ...
101s Unpacking libpkgconf3:s390x (1.8.1-4) ...
101s Selecting previously unselected package zlib1g-dev:s390x.
101s Preparing to unpack .../076-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
101s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
101s Selecting previously unselected package libpng-dev:s390x.
101s Preparing to unpack .../077-libpng-dev_1.6.47-1.1_s390x.deb ...
101s Unpacking libpng-dev:s390x (1.6.47-1.1) ...
101s Selecting previously unselected package libreadline-dev:s390x.
101s Preparing to unpack .../078-libreadline-dev_8.2-6_s390x.deb ...
101s Unpacking libreadline-dev:s390x (8.2-6) ...
101s Selecting previously unselected package libsharpyuv0:s390x.
101s Preparing to unpack .../079-libsharpyuv0_1.5.0-0.1_s390x.deb ...
101s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
101s Selecting previously unselected package libsm6:s390x.
101s Preparing to unpack .../080-libsm6_2%3a1.2.6-1_s390x.deb ...
101s Unpacking libsm6:s390x (2:1.2.6-1) ...
102s Selecting previously unselected package libtcl8.6:s390x.
102s Preparing to unpack .../081-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
102s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
102s Selecting previously unselected package libjbig0:s390x.
102s Preparing to unpack .../082-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
102s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
102s Selecting previously unselected package libwebp7:s390x.
102s Preparing to unpack .../083-libwebp7_1.5.0-0.1_s390x.deb ...
102s Unpacking libwebp7:s390x (1.5.0-0.1) ...
102s Selecting previously unselected package libtiff6:s390x.
102s Preparing to unpack .../084-libtiff6_4.7.0-3ubuntu1_s390x.deb ...
102s Unpacking libtiff6:s390x (4.7.0-3ubuntu1) ...
102s Selecting previously unselected package libxft2:s390x.
102s Preparing to unpack .../085-libxft2_2.3.6-1build1_s390x.deb ...
102s Unpacking libxft2:s390x (2.3.6-1build1) ...
102s Selecting previously unselected package libxss1:s390x.
102s Preparing to unpack .../086-libxss1_1%3a1.2.3-1build3_s390x.deb ...
102s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
102s Selecting previously unselected package libtk8.6:s390x.
102s Preparing to unpack .../087-libtk8.6_8.6.16-1_s390x.deb ...
102s Unpacking libtk8.6:s390x (8.6.16-1) ...
102s Selecting previously unselected package libxt6t64:s390x.
102s Preparing to unpack .../088-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
102s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
102s Selecting previously unselected package libzstd-dev:s390x.
102s Preparing to unpack .../089-libzstd-dev_1.5.7+dfsg-1_s390x.deb ...
102s Unpacking libzstd-dev:s390x (1.5.7+dfsg-1) ...
102s Selecting previously unselected package zip.
102s Preparing to unpack .../090-zip_3.0-14ubuntu2_s390x.deb ...
102s Unpacking zip (3.0-14ubuntu2) ...
102s Selecting previously unselected package unzip.
102s Preparing to unpack .../091-unzip_6.0-28ubuntu6_s390x.deb ...
102s Unpacking unzip (6.0-28ubuntu6) ...
102s Selecting previously unselected package xdg-utils.
102s Preparing to unpack .../092-xdg-utils_1.2.1-2ubuntu1_all.deb ...
102s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
102s Selecting previously unselected package r-base-core.
102s Preparing to unpack .../093-r-base-core_4.5.0-3_s390x.deb ...
102s Unpacking r-base-core (4.5.0-3) ...
102s Selecting previously unselected package liblzma-dev:s390x.
102s Preparing to unpack .../094-liblzma-dev_5.8.1-1_s390x.deb ...
102s Unpacking liblzma-dev:s390x (5.8.1-1) ...
102s Selecting previously unselected package pkgconf-bin.
102s Preparing to unpack .../095-pkgconf-bin_1.8.1-4_s390x.deb ...
102s Unpacking pkgconf-bin (1.8.1-4) ...
102s Selecting previously unselected package pkgconf:s390x.
102s Preparing to unpack .../096-pkgconf_1.8.1-4_s390x.deb ...
102s Unpacking pkgconf:s390x (1.8.1-4) ...
102s Selecting previously unselected package libtirpc-dev:s390x.
102s Preparing to unpack .../097-libtirpc-dev_1.3.6+ds-1_s390x.deb ...
102s Unpacking libtirpc-dev:s390x (1.3.6+ds-1) ...
102s Selecting previously unselected package r-base-dev.
102s Preparing to unpack .../098-r-base-dev_4.5.0-3_all.deb ...
102s Unpacking r-base-dev (4.5.0-3) ...
102s Selecting previously unselected package pkg-r-autopkgtest.
102s Preparing to unpack .../099-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
102s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
102s Selecting previously unselected package r-bioc-biocgenerics.
102s Preparing to unpack .../100-r-bioc-biocgenerics_0.52.0-2_all.deb ...
102s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
102s Selecting previously unselected package r-bioc-s4vectors.
102s Preparing to unpack .../101-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ...
102s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
102s Selecting previously unselected package r-bioc-iranges.
102s Preparing to unpack .../102-r-bioc-iranges_2.40.1-3_s390x.deb ...
102s Unpacking r-bioc-iranges (2.40.1-3) ...
102s Selecting previously unselected package r-bioc-zlibbioc.
102s Preparing to unpack .../103-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
102s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
102s Selecting previously unselected package r-bioc-xvector.
102s Preparing to unpack .../104-r-bioc-xvector_0.46.0-2_s390x.deb ...
102s Unpacking r-bioc-xvector (0.46.0-2) ...
102s Selecting previously unselected package r-cran-curl.
102s Preparing to unpack .../105-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ...
102s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
102s Selecting previously unselected package r-cran-jsonlite.
102s Preparing to unpack .../106-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ...
102s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
102s Selecting previously unselected package r-cran-mime.
102s Preparing to unpack .../107-r-cran-mime_0.12-2_s390x.deb ...
102s Unpacking r-cran-mime (0.12-2) ...
102s Selecting previously unselected package r-cran-sys.
102s Preparing to unpack .../108-r-cran-sys_3.4.3-1_s390x.deb ...
102s Unpacking r-cran-sys (3.4.3-1) ...
102s Selecting previously unselected package r-cran-askpass.
102s Preparing to unpack .../109-r-cran-askpass_1.2.1-1_s390x.deb ...
102s Unpacking r-cran-askpass (1.2.1-1) ...
102s Selecting previously unselected package r-cran-openssl.
102s Preparing to unpack .../110-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ...
102s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
102s Selecting previously unselected package r-cran-r6.
102s Preparing to unpack .../111-r-cran-r6_2.6.1-1_all.deb ...
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102s Selecting previously unselected package r-cran-httr.
102s Preparing to unpack .../112-r-cran-httr_1.4.7+dfsg-1_all.deb ...
102s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
102s Selecting previously unselected package r-bioc-ucsc.utils.
102s Preparing to unpack .../113-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
102s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
102s Selecting previously unselected package r-bioc-genomeinfodbdata.
102s Preparing to unpack .../114-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
102s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
102s Selecting previously unselected package r-bioc-genomeinfodb.
102s Preparing to unpack .../115-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
102s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
102s Selecting previously unselected package r-cran-crayon.
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102s Unpacking r-cran-crayon (1.5.3-1) ...
102s Selecting previously unselected package r-bioc-biostrings.
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102s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
102s Selecting previously unselected package r-bioc-pwalign.
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102s Unpacking r-bioc-pwalign (1.2.0-3) ...
102s Selecting previously unselected package r-cran-runit.
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102s Preparing to unpack .../120-zstd_1.5.7+dfsg-1_s390x.deb ...
102s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ...
103s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
103s Setting up libpixman-1-0:s390x (0.44.0-3) ...
103s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
103s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
103s Setting up libzstd-dev:s390x (1.5.7+dfsg-1) ...
103s Setting up libxrender1:s390x (1:0.9.12-1) ...
103s Setting up libdatrie1:s390x (0.2.13-3build1) ...
103s Setting up gcc-14-base:s390x (14.2.0-22ubuntu1) ...
103s Setting up libxcb-render0:s390x (1.17.0-2) ...
103s Setting up libtirpc-common (1.3.6+ds-1) ...
103s Setting up unzip (6.0-28ubuntu6) ...
103s Setting up x11-common (1:7.7+23ubuntu4) ...
103s Setting up libdeflate0:s390x (1.23-2) ...
103s Setting up libxcb-shm0:s390x (1.17.0-2) ...
103s Setting up libreadline-dev:s390x (8.2-6) ...
103s Setting up libgomp1:s390x (15.1.0-2ubuntu1) ...
103s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
103s Setting up libpcre2-16-0:s390x (10.45-1) ...
103s Setting up zip (3.0-14ubuntu2) ...
103s Setting up libpcre2-32-0:s390x (10.45-1) ...
103s Setting up libblas3:s390x (3.12.1-2) ...
103s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
103s Setting up libpkgconf3:s390x (1.8.1-4) ...
103s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
103s Setting up xz-utils (5.8.1-1) ...
103s Setting up fonts-dejavu-mono (2.37-8) ...
103s Setting up libmpc3:s390x (1.3.1-1build2) ...
103s Setting up libatomic1:s390x (15.1.0-2ubuntu1) ...
103s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
103s Setting up icu-devtools (76.1-1ubuntu2) ...
103s Setting up fonts-dejavu-core (2.37-8) ...
103s Setting up pkgconf-bin (1.8.1-4) ...
103s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
103s Setting up libgfortran5:s390x (15.1.0-2ubuntu1) ...
103s Setting up libwebp7:s390x (1.5.0-0.1) ...
103s Setting up liblzma-dev:s390x (5.8.1-1) ...
103s Setting up libubsan1:s390x (15.1.0-2ubuntu1) ...
103s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
103s Setting up libpcre2-posix3:s390x (10.45-1) ...
103s Setting up libasan8:s390x (15.1.0-2ubuntu1) ...
103s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
103s Setting up libthai-data (0.1.29-2build1) ...
103s Setting up libxss1:s390x (1:1.2.3-1build3) ...
103s Setting up libpaper2:s390x (2.2.5-0.3) ...
103s Setting up libisl23:s390x (0.27-1) ...
103s Setting up libdeflate-dev:s390x (1.23-2) ...
103s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
103s Setting up xdg-utils (1.2.1-2ubuntu1) ...
103s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
103s Setting up zstd (1.5.7+dfsg-1) ...
103s Setting up libcc1-0:s390x (15.1.0-2ubuntu1) ...
103s Setting up libblas-dev:s390x (3.12.1-2) ...
103s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
103s Setting up dctrl-tools (2.24-3build3) ...
103s Setting up libitm1:s390x (15.1.0-2ubuntu1) ...
103s Setting up libbz2-dev:s390x (1.0.8-6) ...
103s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
103s Setting up libice6:s390x (2:1.1.1-1) ...
103s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
103s Setting up liblapack3:s390x (3.12.1-2) ...
103s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
103s Setting up libpcre2-dev:s390x (10.45-1) ...
103s Setting up libtirpc3t64:s390x (1.3.6+ds-1) ...
103s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ...
103s Setting up libpng-dev:s390x (1.6.47-1.1) ...
103s Setting up libpaper-utils (2.2.5-0.3) ...
103s Setting up pkgconf:s390x (1.8.1-4) ...
103s Setting up libthai0:s390x (0.1.29-2build1) ...
103s Setting up libtirpc-dev:s390x (1.3.6+ds-1) ...
103s Setting up liblapack-dev:s390x (3.12.1-2) ...
103s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
103s Setting up cpp-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
103s Setting up cpp-14 (14.2.0-22ubuntu1) ...
103s Setting up libtiff6:s390x (4.7.0-3ubuntu1) ...
103s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ...
103s Setting up libgcc-14-dev:s390x (14.2.0-22ubuntu1) ...
103s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
103s Setting up libstdc++-14-dev:s390x (14.2.0-22ubuntu1) ...
103s Setting up libsm6:s390x (2:1.2.6-1) ...
103s Setting up libgfortran-14-dev:s390x (14.2.0-22ubuntu1) ...
103s Setting up fontconfig (2.15.0-2.2ubuntu1) ...
105s Regenerating fonts cache... done.
105s Setting up libxft2:s390x (2.3.6-1build1) ...
105s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
105s Setting up libtk8.6:s390x (8.6.16-1) ...
105s Setting up libpango-1.0-0:s390x (1.56.3-1) ...
105s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
105s Setting up libcairo2:s390x (1.18.4-1) ...
105s Setting up gcc-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
105s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
105s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
105s Setting up g++-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
105s Setting up cpp (4:14.2.0-1ubuntu1) ...
105s Setting up libpangoft2-1.0-0:s390x (1.56.3-1) ...
105s Setting up libpangocairo-1.0-0:s390x (1.56.3-1) ...
105s Setting up gfortran-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
105s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
105s Setting up gcc-14 (14.2.0-22ubuntu1) ...
105s Setting up r-base-core (4.5.0-3) ...
105s Creating config file /etc/R/Renviron with new version
105s Setting up r-cran-crayon (1.5.3-1) ...
105s Setting up g++-14 (14.2.0-22ubuntu1) ...
105s Setting up r-cran-r6 (2.6.1-1) ...
105s Setting up gfortran-14 (14.2.0-22ubuntu1) ...
105s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
105s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
105s Setting up r-bioc-biocgenerics (0.52.0-2) ...
105s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
105s Setting up r-cran-sys (3.4.3-1) ...
105s Setting up r-cran-mime (0.12-2) ...
105s Setting up gcc (4:14.2.0-1ubuntu1) ...
105s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
105s Setting up r-cran-askpass (1.2.1-1) ...
105s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
105s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
105s Setting up r-cran-runit (0.4.33-1) ...
105s Setting up g++ (4:14.2.0-1ubuntu1) ...
105s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
105s Setting up build-essential (12.12ubuntu1) ...
105s Setting up r-bioc-iranges (2.40.1-3) ...
105s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
105s Setting up gfortran (4:14.2.0-1ubuntu1) ...
105s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
105s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
105s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
105s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
105s Setting up r-cran-httr (1.4.7+dfsg-1) ...
105s Setting up r-bioc-xvector (0.46.0-2) ...
105s Setting up r-base-dev (4.5.0-3) ...
105s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
105s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
105s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
105s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
105s Setting up r-bioc-pwalign (1.2.0-3) ...
105s Processing triggers for man-db (2.13.0-1) ...
107s Processing triggers for install-info (7.1.1-1) ...
107s Processing triggers for libc-bin (2.41-6ubuntu1) ...
108s autopkgtest [11:36:11]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
108s autopkgtest [11:36:11]: test pkg-r-autopkgtest: [-----------------------
108s Test: Try to load the R library pwalign
108s 
108s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
108s Copyright (C) 2025 The R Foundation for Statistical Computing
108s Platform: s390x-ibm-linux-gnu
108s 
108s R is free software and comes with ABSOLUTELY NO WARRANTY.
108s You are welcome to redistribute it under certain conditions.
108s Type 'license()' or 'licence()' for distribution details.
108s 
108s R is a collaborative project with many contributors.
108s Type 'contributors()' for more information and
108s 'citation()' on how to cite R or R packages in publications.
108s 
108s Type 'demo()' for some demos, 'help()' for on-line help, or
108s 'help.start()' for an HTML browser interface to help.
108s Type 'q()' to quit R.
108s 
108s > library('pwalign')
108s Loading required package: BiocGenerics
108s 
108s Attaching package: ‘BiocGenerics’
108s 
108s The following objects are masked from ‘package:stats’:
108s 
108s     IQR, mad, sd, var, xtabs
108s 
108s The following objects are masked from ‘package:base’:
108s 
108s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
108s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
108s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
108s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
108s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
108s     table, tapply, union, unique, unsplit, which.max, which.min
108s 
108s Loading required package: S4Vectors
108s Loading required package: stats4
109s 
109s Attaching package: ‘S4Vectors’
109s 
109s The following object is masked from ‘package:utils’:
109s 
109s     findMatches
109s 
109s The following objects are masked from ‘package:base’:
109s 
109s     expand.grid, I, unname
109s 
109s Loading required package: IRanges
109s Loading required package: Biostrings
109s Loading required package: XVector
110s Loading required package: GenomeInfoDb
110s 
110s Attaching package: ‘Biostrings’
110s 
110s The following object is masked from ‘package:base’:
110s 
110s     strsplit
110s 
110s 
110s Attaching package: ‘pwalign’
110s 
110s > The following objects are masked from ‘package:Biostrings’:
110s 
110s     aligned, alignedPattern, alignedSubject, compareStrings, deletion,
110s     errorSubstitutionMatrices, indel, insertion, mismatchSummary,
110s     mismatchTable, nedit, nindel, nucleotideSubstitutionMatrix,
110s     pairwiseAlignment, PairwiseAlignments,
110s     PairwiseAlignmentsSingleSubject, pid, qualitySubstitutionMatrices,
110s     stringDist, unaligned, writePairwiseAlignments
110s 
110s 
110s Other tests are currently unsupported!
110s They will be progressively added.
111s autopkgtest [11:36:14]: test pkg-r-autopkgtest: -----------------------]
111s autopkgtest [11:36:14]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
111s pkg-r-autopkgtest    PASS
112s autopkgtest [11:36:15]: @@@@@@@@@@@@@@@@@@@@ summary
112s pkg-r-autopkgtest    PASS
128s nova [W] Using flock in prodstack6-s390x
128s Creating nova instance adt-questing-s390x-r-bioc-pwalign-20250503-113423-juju-7f2275-prod-proposed-migration-environment-15-b58cde55-9863-4f59-8eb7-0946c00e187b from image adt/ubuntu-questing-s390x-server-20250503.img (UUID 28f9c1a1-7734-4b43-83da-146791cb698d)...
128s nova [W] Timed out waiting for 511f1539-1af2-45e1-b58c-cacf02a50604 to get deleted.