0s autopkgtest [15:16:24]: starting date and time: 2025-05-02 15:16:24+0000
  0s autopkgtest [15:16:24]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [15:16:24]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bcvn0nvl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck --apt-upgrade r-bioc-grohmm --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-3.secgroup --name adt-questing-s390x-r-bioc-grohmm-20250502-151624-juju-7f2275-prod-proposed-migration-environment-2-e09acc1c-1626-4fe0-ab03-c826b6350031 --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
106s autopkgtest [15:18:10]: testbed dpkg architecture: s390x
106s autopkgtest [15:18:10]: testbed apt version: 3.0.0
106s autopkgtest [15:18:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup
107s autopkgtest [15:18:11]: testbed release detected to be: None
107s autopkgtest [15:18:11]: updating testbed package index (apt update)
108s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
108s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
108s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
108s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
108s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2024 kB]
108s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [164 kB]
108s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.2 kB]
108s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [194 kB]
108s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1236 kB]
108s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [8572 B]
109s Fetched 3781 kB in 1s (3091 kB/s)
109s Reading package lists...
110s autopkgtest [15:18:14]: upgrading testbed (apt dist-upgrade and autopurge)
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
110s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
110s Starting 2 pkgProblemResolver with broken count: 0
110s Done
111s Entering ResolveByKeep
111s 
111s Calculating upgrade...
111s The following packages will be upgraded:
111s   fwupd htop libftdi1-2 libfwupd3 libnpth0t64 libsensors-config libsensors5
111s   liburcu8t64 nano usb.ids
111s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
111s Need to get 2536 kB of archives.
111s After this operation, 3749 kB disk space will be freed.
111s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x libnpth0t64 s390x 1.8-3 [8778 B]
111s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x libsensors-config all 1:3.6.2-2 [6756 B]
111s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x libsensors5 s390x 1:3.6.2-2 [29.2 kB]
111s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x liburcu8t64 s390x 0.15.2-2 [66.3 kB]
111s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x nano s390x 8.4-1 [299 kB]
111s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x usb.ids all 2025.04.01-1 [223 kB]
112s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x fwupd s390x 2.0.8-3 [1548 kB]
113s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libfwupd3 s390x 2.0.8-3 [135 kB]
113s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x htop s390x 3.4.1-4 [189 kB]
113s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libftdi1-2 s390x 1.5-10 [31.4 kB]
113s Fetched 2536 kB in 2s (1415 kB/s)
113s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81472 files and directories currently installed.)
113s Preparing to unpack .../libnpth0t64_1.8-3_s390x.deb ...
113s Unpacking libnpth0t64:s390x (1.8-3) over (1.8-2) ...
113s Setting up libnpth0t64:s390x (1.8-3) ...
113s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81472 files and directories currently installed.)
113s Preparing to unpack .../0-libsensors-config_1%3a3.6.2-2_all.deb ...
113s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ...
113s Preparing to unpack .../1-libsensors5_1%3a3.6.2-2_s390x.deb ...
113s Unpacking libsensors5:s390x (1:3.6.2-2) over (1:3.6.0-10) ...
113s Preparing to unpack .../2-liburcu8t64_0.15.2-2_s390x.deb ...
113s Unpacking liburcu8t64:s390x (0.15.2-2) over (0.15.1-1) ...
113s Preparing to unpack .../3-nano_8.4-1_s390x.deb ...
113s Unpacking nano (8.4-1) over (8.3-1) ...
113s Preparing to unpack .../4-usb.ids_2025.04.01-1_all.deb ...
113s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ...
113s Preparing to unpack .../5-fwupd_2.0.8-3_s390x.deb ...
113s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ...
113s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty
113s Preparing to unpack .../6-libfwupd3_2.0.8-3_s390x.deb ...
113s Unpacking libfwupd3:s390x (2.0.8-3) over (2.0.7-1) ...
113s Preparing to unpack .../7-htop_3.4.1-4_s390x.deb ...
113s Unpacking htop (3.4.1-4) over (3.4.0-2) ...
113s Preparing to unpack .../8-libftdi1-2_1.5-10_s390x.deb ...
113s Unpacking libftdi1-2:s390x (1.5-10) over (1.5-8build1) ...
113s Setting up liburcu8t64:s390x (0.15.2-2) ...
113s Setting up htop (3.4.1-4) ...
113s Setting up libsensors-config (1:3.6.2-2) ...
113s Installing new version of config file /etc/sensors3.conf ...
113s Setting up libfwupd3:s390x (2.0.8-3) ...
113s Setting up libftdi1-2:s390x (1.5-10) ...
113s Setting up usb.ids (2025.04.01-1) ...
113s Setting up libsensors5:s390x (1:3.6.2-2) ...
113s Setting up nano (8.4-1) ...
113s Installing new version of config file /etc/nanorc ...
113s Setting up fwupd (2.0.8-3) ...
114s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
114s fwupd.service is a disabled or a static unit not running, not starting it.
114s Processing triggers for man-db (2.13.0-1) ...
115s Processing triggers for dbus (1.16.2-2ubuntu1) ...
115s Processing triggers for install-info (7.1.1-1) ...
115s Processing triggers for libc-bin (2.41-6ubuntu1) ...
115s Reading package lists...
115s Building dependency tree...
115s Reading state information...
115s Starting pkgProblemResolver with broken count: 0
115s Starting 2 pkgProblemResolver with broken count: 0
115s Done
115s Solving dependencies...
115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
116s autopkgtest [15:18:20]: rebooting testbed after setup commands that affected boot
134s autopkgtest [15:18:38]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr  6 13:39:00 UTC 2025
136s autopkgtest [15:18:40]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-grohmm
141s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-grohmm 1.40.3-2 (dsc) [2214 B]
141s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-grohmm 1.40.3-2 (tar) [4365 kB]
141s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-grohmm 1.40.3-2 (diff) [3640 B]
141s gpgv: Signature made Mon Jan 13 20:23:01 2025 UTC
141s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
141s gpgv:                issuer "crusoe@debian.org"
141s gpgv: Can't check signature: No public key
141s dpkg-source: warning: cannot verify inline signature for ./r-bioc-grohmm_1.40.3-2.dsc: no acceptable signature found
141s autopkgtest [15:18:45]: testing package r-bioc-grohmm version 1.40.3-2
142s autopkgtest [15:18:46]: build not needed
144s autopkgtest [15:18:48]: test pkg-r-autopkgtest: preparing testbed
144s Reading package lists...
144s Building dependency tree...
144s Reading state information...
144s Starting pkgProblemResolver with broken count: 27
144s Starting 2 pkgProblemResolver with broken count: 27
144s Investigating (0) r-cran-shiny:s390x < none -> 1.10.0+dfsg-2 @un puN Ib >
145s Broken r-cran-shiny:s390x Depends on r-cran-rlang:s390x < none @un pH > (>= 0.4.10)
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-shiny:s390x 66
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-shiny:s390x 66
145s Investigating (0) r-cran-sass:s390x < none -> 0.4.9+dfsg-1 @un puN Ib >
145s Broken r-cran-sass:s390x Depends on r-cran-rlang:s390x < none @un pH > (>= 0.4.10)
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-sass:s390x 62
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-sass:s390x 62
145s Investigating (0) r-cran-bslib:s390x < none -> 0.9.0+dfsg-1syncable1 @un puN Ib >
145s Broken r-cran-bslib:s390x Depends on r-cran-rlang:s390x < none @un pH >
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-bslib:s390x 59
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-bslib:s390x 59
145s Investigating (0) r-cran-htmltools:s390x < none -> 0.5.8.1-1 @un puN Ib >
145s Broken r-cran-htmltools:s390x Depends on r-cran-rlang:s390x < none @un pH > (>= 1.0.0)
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-htmltools:s390x 49
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-htmltools:s390x 49
145s Investigating (0) r-cran-vctrs:s390x < none -> 0.6.5-1 @un puN Ib >
145s Broken r-cran-vctrs:s390x Depends on r-cran-rlang:s390x < none @un pH > (>= 1.1.0)
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-vctrs:s390x 44
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-vctrs:s390x 44
145s Investigating (0) r-cran-fontawesome:s390x < none -> 0.5.3-1 @un puN Ib >
145s Broken r-cran-fontawesome:s390x Depends on r-cran-rlang:s390x < none @un pH > (>= 1.0.6)
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-fontawesome:s390x 34
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-fontawesome:s390x 34
145s Investigating (0) r-cran-rsqlite:s390x < none -> 2.3.9-1 @un puN Ib >
145s Broken r-cran-rsqlite:s390x Depends on r-cran-rlang:s390x < none @un pH >
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-rsqlite:s390x 23
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-rsqlite:s390x 23
145s Investigating (0) r-bioc-genomeinfodb:s390x < none -> 1.42.3+dfsg-1 @un puN Ib >
145s Broken r-bioc-genomeinfodb:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.13.12)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomeinfodb:s390x 20
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomeinfodb:s390x 20
145s Investigating (0) r-cran-later:s390x < none -> 1.4.1+dfsg-1 @un puN Ib >
145s Broken r-cran-later:s390x Depends on r-cran-rlang:s390x < none @un pH >
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-later:s390x 20
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-later:s390x 20
145s Investigating (0) r-bioc-xvector:s390x < none -> 0.46.0-2 @un puN Ib >
145s Broken r-bioc-xvector:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.23.9)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-xvector:s390x 17
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-xvector:s390x 17
145s Investigating (0) r-cran-lifecycle:s390x < none -> 1.0.4+dfsg-1 @un puN Ib >
145s Broken r-cran-lifecycle:s390x Depends on r-cran-rlang:s390x < none @un pH > (>= 1.1.0)
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-lifecycle:s390x 17
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-lifecycle:s390x 17
145s Investigating (0) r-cran-cachem:s390x < none -> 1.1.0-1 @un puN Ib >
145s Broken r-cran-cachem:s390x Depends on r-cran-rlang:s390x < none @un pH >
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-cachem:s390x 12
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-cachem:s390x 12
145s Investigating (0) r-bioc-genomicranges:s390x < none -> 1.58.0+dfsg-2 @un puN Ib >
145s Broken r-bioc-genomicranges:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.37.1)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicranges:s390x 9
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicranges:s390x 9
145s Investigating (0) r-cran-promises:s390x < none -> 1.3.2+dfsg-1 @un puN Ib >
145s Broken r-cran-promises:s390x Depends on r-cran-rlang:s390x < none @un pH >
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-promises:s390x 9
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-promises:s390x 9
145s Investigating (0) r-bioc-biostrings:s390x < none -> 2.74.1+dfsg-2 @un puN Ib >
145s Broken r-bioc-biostrings:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.31.2)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-biostrings:s390x 8
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-biostrings:s390x 8
145s Investigating (0) r-cran-memoise:s390x < none -> 2.0.1-1 @un puN Ib >
145s Broken r-cran-memoise:s390x Depends on r-cran-rlang:s390x < none @un pH > (>= 0.4.10)
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-memoise:s390x 6
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-memoise:s390x 6
145s Investigating (0) r-bioc-annotationdbi:s390x < none -> 1.68.0-2 @un puN Ib >
145s Broken r-bioc-annotationdbi:s390x Depends on r-bioc-iranges:s390x < none @un pH >
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-annotationdbi:s390x 3
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-annotationdbi:s390x 3
145s Investigating (0) r-bioc-rsamtools:s390x < none -> 2.22.0+dfsg-2 @un puN Ib >
145s Broken r-bioc-rsamtools:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.13.12)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-rsamtools:s390x 3
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-rsamtools:s390x 3
145s Investigating (0) r-bioc-rtracklayer:s390x < none -> 1.66.0-2 @un puN Ib >
145s Broken r-bioc-rtracklayer:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.13.13)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-rtracklayer:s390x 2
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-rtracklayer:s390x 2
145s Investigating (0) r-cran-blob:s390x < none -> 1.2.4-1 @un puN Ib >
145s Broken r-cran-blob:s390x Depends on r-cran-rlang:s390x < none @un pH >
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-blob:s390x 2
145s   Considering r-cran-rlang:s390x 10 as a solution to r-cran-blob:s390x 2
145s Investigating (0) r-bioc-s4arrays:s390x < none -> 1.6.0+dfsg-2 @un puN Ib >
145s Broken r-bioc-s4arrays:s390x Depends on r-bioc-iranges:s390x < none @un pH >
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-s4arrays:s390x 2
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-s4arrays:s390x 2
145s Investigating (0) r-bioc-genomicalignments:s390x < none -> 1.42.0-2 @un puN Ib >
145s Broken r-bioc-genomicalignments:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.23.9)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicalignments:s390x 2
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicalignments:s390x 2
145s Investigating (0) r-bioc-summarizedexperiment:s390x < none -> 1.36.0+dfsg-2 @un puN Ib >
145s Broken r-bioc-summarizedexperiment:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.23.9)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-summarizedexperiment:s390x 1
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-summarizedexperiment:s390x 1
145s Investigating (0) r-bioc-genomicfeatures:s390x < none -> 1.58.0+dfsg-2 @un puN Ib >
145s Broken r-bioc-genomicfeatures:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.37.1)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicfeatures:s390x 1
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-genomicfeatures:s390x 1
145s Investigating (0) r-bioc-delayedarray:s390x < none -> 0.32.0+dfsg-2 @un puN Ib >
145s Broken r-bioc-delayedarray:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.17.3)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-delayedarray:s390x 0
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-delayedarray:s390x 0
145s Investigating (0) r-bioc-sparsearray:s390x < none -> 1.6.2+dfsg-1 @un puN Ib >
145s Broken r-bioc-sparsearray:s390x Depends on r-bioc-iranges:s390x < none @un pH >
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-sparsearray:s390x 0
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-sparsearray:s390x 0
145s Investigating (0) r-bioc-grohmm:s390x < none -> 1.40.3-2 @un puN Ib >
145s Broken r-bioc-grohmm:s390x Depends on r-bioc-iranges:s390x < none @un pH > (>= 2.13.12)
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-grohmm:s390x 0
145s   Considering r-bioc-iranges:s390x 3 as a solution to r-bioc-grohmm:s390x 0
145s Done
145s Some packages could not be installed. This may mean that you have
145s requested an impossible situation or if you are using the unstable
145s distribution that some required packages have not yet been created
145s or been moved out of Incoming.
145s The following information may help to resolve the situation:
145s 
145s The following packages have unmet dependencies:
145s  r-bioc-annotationdbi : Depends: r-bioc-iranges but it is not installable
145s  r-bioc-biostrings : Depends: r-bioc-iranges (>= 2.31.2) but it is not installable
145s  r-bioc-delayedarray : Depends: r-bioc-iranges (>= 2.17.3) but it is not installable
145s  r-bioc-genomeinfodb : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable
145s  r-bioc-genomicalignments : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
145s  r-bioc-genomicfeatures : Depends: r-bioc-iranges (>= 2.37.1) but it is not installable
145s  r-bioc-genomicranges : Depends: r-bioc-iranges (>= 2.37.1) but it is not installable
145s  r-bioc-grohmm : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable
145s  r-bioc-rsamtools : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable
145s  r-bioc-rtracklayer : Depends: r-bioc-iranges (>= 2.13.13) but it is not installable
145s  r-bioc-s4arrays : Depends: r-bioc-iranges but it is not installable
145s  r-bioc-sparsearray : Depends: r-bioc-iranges but it is not installable
145s  r-bioc-summarizedexperiment : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
145s  r-bioc-xvector : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
145s  r-cran-blob : Depends: r-cran-rlang but it is not installable
145s  r-cran-bslib : Depends: r-cran-rlang but it is not installable
145s  r-cran-cachem : Depends: r-cran-rlang but it is not installable
145s  r-cran-fontawesome : Depends: r-cran-rlang (>= 1.0.6) but it is not installable
145s  r-cran-htmltools : Depends: r-cran-rlang (>= 1.0.0) but it is not installable
145s  r-cran-later : Depends: r-cran-rlang but it is not installable
145s  r-cran-lifecycle : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
145s  r-cran-memoise : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
145s  r-cran-promises : Depends: r-cran-rlang but it is not installable
145s  r-cran-rsqlite : Depends: r-cran-rlang but it is not installable
145s  r-cran-sass : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
145s  r-cran-shiny : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
145s  r-cran-vctrs : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
145s E: Unable to correct problems, you have held broken packages.
145s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed
145s Reading package lists...
145s Building dependency tree...
145s Reading state information...
145s Starting pkgProblemResolver with broken count: 0
145s Starting 2 pkgProblemResolver with broken count: 0
145s Done
146s The following NEW packages will be installed:
146s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
146s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
146s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
146s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
146s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
146s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools
146s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
146s   libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1
146s   libdeflate-dev libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev
146s   libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
146s   libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
146s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
146s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
146s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
146s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
146s   libjs-popper.js libjs-prettify libjs-sifter.js
146s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
146s   liblatex-tounicode-perl liblua5.4-0 liblzma-dev libmpc3 libmpfi0
146s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
146s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
146s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
146s   libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6
146s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
146s   libtk8.6 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2
146s   libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev
146s   libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv
146s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
146s   r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase
146s   r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle
146s   r-bioc-biocversion r-bioc-biostrings r-bioc-delayedarray r-bioc-edger
146s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
146s   r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-grohmm r-bioc-iranges
146s   r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics r-bioc-org.hs.eg.db
146s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
146s   r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment
146s   r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass
146s   r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64
146s   r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem
146s   r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon
146s   r-cran-curl r-cran-dbi r-cran-digest r-cran-evaluate r-cran-fastmap
146s   r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger
146s   r-cran-futile.options r-cran-glue r-cran-highr r-cran-htmltools
146s   r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr
146s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
146s   r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats
146s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten
146s   r-cran-plogr r-cran-png r-cran-promises r-cran-r6 r-cran-rappdirs
146s   r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang
146s   r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-snow
146s   r-cran-sourcetools r-cran-statmod r-cran-sys r-cran-tinytex r-cran-vctrs
146s   r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils
146s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
146s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
146s The following packages will be upgraded:
146s   gcc-14-base gcc-15-base libatomic1 libgcc-s1 libstdc++6 libtirpc-common
146s   libtirpc3t64 libzstd1 zstd
146s 9 upgraded, 255 newly installed, 0 to remove and 94 not upgraded.
146s Need to get 499 MB of archives.
146s After this operation, 1806 MB of additional disk space will be used.
146s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-15-base s390x 15.1.0-1ubuntu1 [54.5 kB]
146s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgcc-s1 s390x 15.1.0-1ubuntu1 [35.7 kB]
146s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libatomic1 s390x 15.1.0-1ubuntu1 [9566 B]
146s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libstdc++6 s390x 15.1.0-1ubuntu1 [907 kB]
146s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libzstd1 s390x 1.5.7+dfsg-1 [345 kB]
146s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-14-base s390x 14.2.0-22ubuntu1 [55.1 kB]
146s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libtirpc-common all 1.3.6+ds-1 [8198 B]
146s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libtirpc3t64 s390x 1.3.6+ds-1 [84.9 kB]
146s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x libisl23 s390x 0.27-1 [704 kB]
147s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
147s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [9570 kB]
148s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/main s390x cpp-14 s390x 14.2.0-22ubuntu1 [1028 B]
148s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
148s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
148s Get:15 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libcc1-0 s390x 15.1.0-1ubuntu1 [49.8 kB]
148s Get:16 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgomp1 s390x 15.1.0-1ubuntu1 [153 kB]
148s Get:17 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libitm1 s390x 15.1.0-1ubuntu1 [31.1 kB]
148s Get:18 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libasan8 s390x 15.1.0-1ubuntu1 [2971 kB]
148s Get:19 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libubsan1 s390x 15.1.0-1ubuntu1 [1211 kB]
149s Get:20 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgcc-14-dev s390x 14.2.0-22ubuntu1 [1037 kB]
149s Get:21 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [18.7 MB]
150s Get:22 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gcc-14 s390x 14.2.0-22ubuntu1 [536 kB]
150s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
150s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
150s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libstdc++-14-dev s390x 14.2.0-22ubuntu1 [2961 kB]
150s Get:26 http://ftpmaster.internal/ubuntu questing-proposed/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [11.0 MB]
150s Get:27 http://ftpmaster.internal/ubuntu questing-proposed/main s390x g++-14 s390x 14.2.0-22ubuntu1 [24.0 kB]
150s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
150s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
150s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x build-essential s390x 12.12ubuntu1 [5090 B]
150s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
150s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
150s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
150s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
150s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB]
150s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB]
150s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig s390x 2.15.0-2.2ubuntu1 [191 kB]
150s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
150s Get:39 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-4 [119 kB]
150s Get:40 http://ftpmaster.internal/ubuntu questing/universe s390x fonts-lmodern all 2.005-1 [4799 kB]
150s Get:41 http://ftpmaster.internal/ubuntu questing/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
150s Get:42 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgfortran5 s390x 15.1.0-1ubuntu1 [614 kB]
150s Get:43 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libgfortran-14-dev s390x 14.2.0-22ubuntu1 [653 kB]
151s Get:44 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-22ubuntu1 [10.3 MB]
151s Get:45 http://ftpmaster.internal/ubuntu questing-proposed/main s390x gfortran-14 s390x 14.2.0-22ubuntu1 [14.4 kB]
151s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
151s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
151s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
151s Get:49 http://ftpmaster.internal/ubuntu questing/main s390x javascript-common all 12 [5216 B]
151s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x libio-string-perl all 1.08-4 [11.1 kB]
151s Get:51 http://ftpmaster.internal/ubuntu questing/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB]
151s Get:52 http://ftpmaster.internal/ubuntu questing/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
151s Get:53 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB]
151s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
151s Get:55 http://ftpmaster.internal/ubuntu questing/main s390x libboost1.83-dev s390x 1.83.0-4.2ubuntu1 [10.7 MB]
152s Get:56 http://ftpmaster.internal/ubuntu questing/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B]
152s Get:57 http://ftpmaster.internal/ubuntu questing/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
152s Get:58 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
152s Get:59 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
152s Get:60 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
152s Get:61 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB]
152s Get:62 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB]
152s Get:63 http://ftpmaster.internal/ubuntu questing/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
152s Get:64 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libdeflate0 s390x 1.23-2 [46.0 kB]
152s Get:65 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libdeflate-dev s390x 1.23-2 [51.9 kB]
152s Get:66 http://ftpmaster.internal/ubuntu questing/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
152s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
152s Get:68 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB]
152s Get:69 http://ftpmaster.internal/ubuntu questing/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
152s Get:70 http://ftpmaster.internal/ubuntu questing/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
152s Get:71 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
152s Get:72 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
152s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
152s Get:74 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
152s Get:75 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
152s Get:76 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x libjs-bootstrap all 3.4.1+dfsg-4 [129 kB]
152s Get:77 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
152s Get:78 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
152s Get:79 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-d3 all 3.5.17-4 [132 kB]
152s Get:80 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB]
152s Get:81 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
152s Get:82 http://ftpmaster.internal/ubuntu questing/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
152s Get:83 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
152s Get:84 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
152s Get:85 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
152s Get:86 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
152s Get:87 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
152s Get:88 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
152s Get:89 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
152s Get:90 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
152s Get:91 http://ftpmaster.internal/ubuntu questing/universe s390x libkpathsea6 s390x 2024.20240313.70630+ds-6 [67.0 kB]
152s Get:92 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
153s Get:93 http://ftpmaster.internal/ubuntu questing/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
153s Get:94 http://ftpmaster.internal/ubuntu questing/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB]
153s Get:95 http://ftpmaster.internal/ubuntu questing/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB]
153s Get:96 http://ftpmaster.internal/ubuntu questing/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
153s Get:97 http://ftpmaster.internal/ubuntu questing/main s390x libthai-data all 0.1.29-2build1 [158 kB]
153s Get:98 http://ftpmaster.internal/ubuntu questing/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
153s Get:99 http://ftpmaster.internal/ubuntu questing/main s390x libpango-1.0-0 s390x 1.56.3-1 [254 kB]
153s Get:100 http://ftpmaster.internal/ubuntu questing/main s390x libpangoft2-1.0-0 s390x 1.56.3-1 [50.5 kB]
153s Get:101 http://ftpmaster.internal/ubuntu questing/main s390x libpangocairo-1.0-0 s390x 1.56.3-1 [28.2 kB]
153s Get:102 http://ftpmaster.internal/ubuntu questing/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
153s Get:103 http://ftpmaster.internal/ubuntu questing/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
153s Get:104 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
154s Get:105 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
154s Get:106 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
154s Get:107 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
154s Get:108 http://ftpmaster.internal/ubuntu questing/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
154s Get:109 http://ftpmaster.internal/ubuntu questing/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
154s Get:110 http://ftpmaster.internal/ubuntu questing/main s390x libpng-dev s390x 1.6.47-1.1 [278 kB]
154s Get:111 http://ftpmaster.internal/ubuntu questing/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB]
154s Get:112 http://ftpmaster.internal/ubuntu questing/universe s390x libptexenc1 s390x 2024.20240313.70630+ds-6 [43.4 kB]
154s Get:113 http://ftpmaster.internal/ubuntu questing/main s390x libreadline-dev s390x 8.2-6 [187 kB]
154s Get:114 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
154s Get:115 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libsm6 s390x 2:1.2.6-1 [18.3 kB]
154s Get:116 http://ftpmaster.internal/ubuntu questing/universe s390x libsynctex2 s390x 2024.20240313.70630+ds-6 [64.8 kB]
154s Get:117 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
155s Get:118 http://ftpmaster.internal/ubuntu questing/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB]
155s Get:119 http://ftpmaster.internal/ubuntu questing/universe s390x libtexlua53-5 s390x 2024.20240313.70630+ds-6 [131 kB]
155s Get:120 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
155s Get:121 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
155s Get:122 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.7.0-3ubuntu1 [219 kB]
155s Get:123 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
155s Get:124 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
155s Get:125 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
155s Get:126 http://ftpmaster.internal/ubuntu questing/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
155s Get:127 http://ftpmaster.internal/ubuntu questing/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB]
155s Get:128 http://ftpmaster.internal/ubuntu questing/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB]
155s Get:129 http://ftpmaster.internal/ubuntu questing/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB]
155s Get:130 http://ftpmaster.internal/ubuntu questing/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
155s Get:131 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libzstd-dev s390x 1.5.7+dfsg-1 [415 kB]
155s Get:132 http://ftpmaster.internal/ubuntu questing/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB]
155s Get:133 http://ftpmaster.internal/ubuntu questing/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
155s Get:134 http://ftpmaster.internal/ubuntu questing/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
155s Get:135 http://ftpmaster.internal/ubuntu questing/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
155s Get:136 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-base-core s390x 4.5.0-3 [29.0 MB]
157s Get:137 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-cran-littler s390x 0.3.21-1 [97.4 kB]
157s Get:138 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x littler all 0.3.21-1 [2584 B]
157s Get:139 http://ftpmaster.internal/ubuntu questing/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB]
157s Get:140 http://ftpmaster.internal/ubuntu questing/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
157s Get:141 http://ftpmaster.internal/ubuntu questing/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB]
157s Get:142 http://ftpmaster.internal/ubuntu questing/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB]
157s Get:143 http://ftpmaster.internal/ubuntu questing/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB]
163s Get:144 http://ftpmaster.internal/ubuntu questing/main s390x liblzma-dev s390x 5.6.4-1ubuntu1 [184 kB]
163s Get:145 http://ftpmaster.internal/ubuntu questing/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
163s Get:146 http://ftpmaster.internal/ubuntu questing/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
163s Get:147 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libtirpc-dev s390x 1.3.6+ds-1 [196 kB]
163s Get:148 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-base-dev all 4.5.0-3 [4188 B]
163s Get:149 http://ftpmaster.internal/ubuntu questing/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
163s Get:150 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
163s Get:151 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
163s Get:152 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB]
164s Get:153 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-bioc-iranges s390x 2.40.1-3 [2300 kB]
164s Get:154 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-dbi all 1.2.3-1 [853 kB]
165s Get:155 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB]
165s Get:156 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB]
165s Get:157 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-cran-rlang s390x 1.1.5-3 [1711 kB]
165s Get:158 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
165s Get:159 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
165s Get:160 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
165s Get:161 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
166s Get:162 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB]
166s Get:163 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB]
166s Get:164 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB]
166s Get:165 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
166s Get:166 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
166s Get:167 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB]
166s Get:168 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB]
166s Get:169 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB]
166s Get:170 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB]
166s Get:171 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
166s Get:172 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
166s Get:173 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB]
166s Get:174 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB]
166s Get:175 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB]
166s Get:176 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
166s Get:177 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
166s Get:178 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB]
166s Get:179 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
166s Get:180 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB]
166s Get:181 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
166s Get:182 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
169s Get:183 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
169s Get:184 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
169s Get:185 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB]
171s Get:186 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB]
171s Get:187 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
172s Get:188 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
172s Get:189 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-formatr all 1.14-2 [152 kB]
172s Get:190 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB]
172s Get:191 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
172s Get:192 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
172s Get:193 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB]
172s Get:194 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB]
172s Get:195 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
172s Get:196 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB]
172s Get:197 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB]
172s Get:198 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
172s Get:199 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB]
172s Get:200 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
172s Get:201 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB]
172s Get:202 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB]
172s Get:203 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB]
173s Get:204 http://ftpmaster.internal/ubuntu questing/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
174s Get:205 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-knitr all 1.50+dfsg-1 [840 kB]
174s Get:206 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
174s Get:207 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
174s Get:208 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB]
174s Get:209 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB]
174s Get:210 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-cran-bslib all 0.9.0+dfsg-3 [4562 kB]
174s Get:211 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB]
174s Get:212 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-tinytex all 0.56-1 [148 kB]
174s Get:213 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB]
174s Get:214 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
174s Get:215 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
175s Get:216 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB]
175s Get:217 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
175s Get:218 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB]
175s Get:219 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB]
175s Get:220 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
175s Get:221 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB]
175s Get:222 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
175s Get:223 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-commonmark s390x 1.9.5-1 [142 kB]
175s Get:224 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
175s Get:225 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
175s Get:226 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
175s Get:227 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
175s Get:228 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
175s Get:229 http://ftpmaster.internal/ubuntu questing/universe s390x tex-common all 6.19 [29.8 kB]
175s Get:230 http://ftpmaster.internal/ubuntu questing/main s390x t1utils s390x 1.41-4build3 [65.6 kB]
175s Get:231 http://ftpmaster.internal/ubuntu questing/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-6 [9170 kB]
176s Get:232 http://ftpmaster.internal/ubuntu questing/universe s390x texlive-base all 2024.20250309-1 [22.7 MB]
177s Get:233 http://ftpmaster.internal/ubuntu questing/universe s390x texlive-latex-base all 2024.20250309-1 [1276 kB]
177s Get:234 http://ftpmaster.internal/ubuntu questing/universe s390x texlive-bibtex-extra all 2024.20250309-2 [79.3 MB]
181s Get:235 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB]
181s Get:236 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
181s Get:237 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x r-cran-lattice s390x 0.22-7-1 [1365 kB]
181s Get:238 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
181s Get:239 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB]
181s Get:240 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
181s Get:241 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB]
181s Get:242 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB]
181s Get:243 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB]
181s Get:244 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB]
181s Get:245 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB]
181s Get:246 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-limma s390x 3.62.2+dfsg-1 [1973 kB]
182s Get:247 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-locfit s390x 1.5-9.12-1 [539 kB]
182s Get:248 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-edger s390x 4.4.2+dfsg-1 [1125 kB]
182s Get:249 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB]
182s Get:250 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
182s Get:251 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB]
182s Get:252 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB]
182s Get:253 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-rsamtools s390x 2.22.0+dfsg-2 [3729 kB]
182s Get:254 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomicalignments s390x 1.42.0-2 [2152 kB]
182s Get:255 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB]
182s Get:256 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB]
182s Get:257 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-rjson s390x 0.2.23-1 [104 kB]
182s Get:258 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB]
182s Get:259 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-rtracklayer s390x 1.66.0-2 [5235 kB]
183s Get:260 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
183s Get:261 http://ftpmaster.internal/ubuntu questing/universe s390x r-cran-mass s390x 7.3-65-1 [1114 kB]
183s Get:262 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-grohmm s390x 1.40.3-2 [4458 kB]
183s Get:263 http://ftpmaster.internal/ubuntu questing/universe s390x r-bioc-org.hs.eg.db all 3.20.0-3 [63.1 MB]
187s Get:264 http://ftpmaster.internal/ubuntu questing-proposed/main s390x zstd s390x 1.5.7+dfsg-1 [722 kB]
187s Preconfiguring packages ...
187s Fetched 499 MB in 41s (12.2 MB/s)
187s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81470 files and directories currently installed.)
187s Preparing to unpack .../gcc-15-base_15.1.0-1ubuntu1_s390x.deb ...
187s Unpacking gcc-15-base:s390x (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
187s Setting up gcc-15-base:s390x (15.1.0-1ubuntu1) ...
187s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81470 files and directories currently installed.)
187s Preparing to unpack .../libgcc-s1_15.1.0-1ubuntu1_s390x.deb ...
187s Unpacking libgcc-s1:s390x (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
187s Setting up libgcc-s1:s390x (15.1.0-1ubuntu1) ...
188s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81470 files and directories currently installed.)
188s Preparing to unpack .../libatomic1_15.1.0-1ubuntu1_s390x.deb ...
188s Unpacking libatomic1:s390x (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
188s Preparing to unpack .../libstdc++6_15.1.0-1ubuntu1_s390x.deb ...
188s Unpacking libstdc++6:s390x (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
188s Setting up libstdc++6:s390x (15.1.0-1ubuntu1) ...
188s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
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192s Selecting previously unselected package r-base-core.
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192s Selecting previously unselected package r-cran-littler.
192s Preparing to unpack .../131-r-cran-littler_0.3.21-1_s390x.deb ...
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192s Selecting previously unselected package littler.
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192s Selecting previously unselected package node-html5shiv.
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192s Selecting previously unselected package pandoc-data.
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193s Selecting previously unselected package liblzma-dev:s390x.
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194s Selecting previously unselected package r-bioc-biocgenerics.
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194s Selecting previously unselected package r-cran-dbi.
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194s Selecting previously unselected package r-cran-rsqlite.
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194s Selecting previously unselected package r-cran-r6.
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194s Selecting previously unselected package r-cran-png.
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194s Selecting previously unselected package r-bioc-zlibbioc.
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194s Selecting previously unselected package r-bioc-genomeinfodbdata.
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194s Selecting previously unselected package r-cran-crayon.
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194s Selecting previously unselected package r-bioc-biostrings.
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194s Selecting previously unselected package r-bioc-annotationdbi.
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194s Selecting previously unselected package r-bioc-biocio.
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194s Selecting previously unselected package r-cran-formatr.
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194s Selecting previously unselected package r-cran-snow.
194s Preparing to unpack .../187-r-cran-snow_1%3a0.4.4-2_all.deb ...
194s Unpacking r-cran-snow (1:0.4.4-2) ...
194s Selecting previously unselected package r-cran-codetools.
194s Preparing to unpack .../188-r-cran-codetools_0.2-20-1_all.deb ...
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194s Selecting previously unselected package r-cran-bh.
194s Preparing to unpack .../189-r-cran-bh_1.84.0-1_all.deb ...
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194s Selecting previously unselected package r-bioc-biocparallel.
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195s Selecting previously unselected package r-cran-base64enc.
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195s Selecting previously unselected package r-cran-digest.
195s Preparing to unpack .../192-r-cran-digest_0.6.37-1_s390x.deb ...
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195s Selecting previously unselected package r-cran-htmltools.
195s Preparing to unpack .../193-r-cran-htmltools_0.5.8.1-1_s390x.deb ...
195s Unpacking r-cran-htmltools (0.5.8.1-1) ...
195s Selecting previously unselected package r-cran-evaluate.
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195s Selecting previously unselected package r-cran-xfun.
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195s Unpacking r-cran-xfun (0.51+dfsg-1) ...
195s Selecting previously unselected package r-cran-highr.
195s Preparing to unpack .../196-r-cran-highr_0.11+dfsg-1_all.deb ...
195s Unpacking r-cran-highr (0.11+dfsg-1) ...
195s Selecting previously unselected package r-cran-yaml.
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195s Selecting previously unselected package libjs-mathjax.
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195s Selecting previously unselected package r-cran-knitr.
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205s Setting up libboost1.83-dev:s390x (1.83.0-4.2ubuntu1) ...
205s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
205s Setting up libtk8.6:s390x (8.6.16-1) ...
205s Setting up libpango-1.0-0:s390x (1.56.3-1) ...
205s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
205s Setting up libcairo2:s390x (1.18.4-1) ...
205s Setting up gcc-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
205s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
205s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
205s Setting up g++-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
205s Setting up cpp (4:14.2.0-1ubuntu1) ...
205s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ...
205s Setting up libpangoft2-1.0-0:s390x (1.56.3-1) ...
205s Setting up libpangocairo-1.0-0:s390x (1.56.3-1) ...
205s Setting up libxmu6:s390x (2:1.1.3-3build2) ...
205s Setting up gfortran-14-s390x-linux-gnu (14.2.0-22ubuntu1) ...
205s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
205s Setting up libxaw7:s390x (2:1.0.16-1) ...
205s Setting up gcc-14 (14.2.0-22ubuntu1) ...
205s Setting up r-base-core (4.5.0-3) ...
205s Creating config file /etc/R/Renviron with new version
205s Setting up r-cran-crayon (1.5.3-1) ...
205s Setting up r-cran-sourcetools (0.1.7-1-1) ...
205s Setting up r-cran-futile.options (1.0.1-3build1) ...
205s Setting up r-cran-lattice (0.22-7-1) ...
205s Setting up r-cran-formatr (1.14-2) ...
205s Setting up r-cran-xml (3.99-0.18-1) ...
205s Setting up r-cran-locfit (1.5-9.12-1) ...
205s Setting up texlive-binaries (2024.20240313.70630+ds-6) ...
205s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
205s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
205s Setting up r-cran-statmod (1.5.0-1) ...
205s Setting up r-cran-commonmark (1.9.5-1) ...
205s Setting up g++-14 (14.2.0-22ubuntu1) ...
205s Setting up r-cran-rjson (0.2.23-1) ...
205s Setting up r-cran-r6 (2.6.1-1) ...
205s Setting up r-cran-pkgkitten (0.2.4-1) ...
205s Setting up gfortran-14 (14.2.0-22ubuntu1) ...
205s Setting up texlive-base (2024.20250309-1) ...
205s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
205s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
205s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
206s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
206s Setting up r-cran-magrittr (2.0.3-1) ...
206s Setting up r-cran-rappdirs (0.3.3-1) ...
206s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
206s Setting up r-cran-littler (0.3.21-1) ...
206s Setting up r-cran-bh (1.84.0-1) ...
206s Setting up r-cran-fs (1.6.5+dfsg-1) ...
206s Setting up r-cran-rcpp (1.0.14-1) ...
206s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
206s Setting up r-cran-codetools (0.2-20-1) ...
206s Setting up r-bioc-biocgenerics (0.52.0-2) ...
206s Setting up r-cran-rlang (1.1.5-3) ...
206s Setting up r-cran-matrixstats (1.5.0-1) ...
206s Setting up littler (0.3.21-1) ...
206s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
206s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
206s Setting up r-cran-xfun (0.51+dfsg-1) ...
206s Setting up r-cran-sys (3.4.3-1) ...
206s Setting up r-cran-plogr (0.2.0-3build1) ...
206s Setting up r-cran-withr (3.0.2+dfsg-1) ...
206s Setting up r-cran-mime (0.12-2) ...
206s Setting up r-cran-base64enc (0.1-3-3) ...
206s Setting up r-cran-abind (1.4-8-1) ...
206s Setting up r-cran-digest (0.6.37-1) ...
206s Setting up r-cran-yaml (2.3.10-1) ...
206s Setting up r-cran-lambda.r (1.2.4-2build1) ...
206s Setting up r-cran-evaluate (1.0.3-1) ...
206s Setting up r-cran-dbi (1.2.3-1) ...
206s Setting up r-cran-highr (0.11+dfsg-1) ...
206s Setting up r-cran-mass (7.3-65-1) ...
206s Setting up r-cran-snow (1:0.4.4-2) ...
206s Setting up r-cran-glue (1.8.0-1) ...
206s Setting up r-cran-bit (4.6.0+dfsg-1) ...
206s Setting up r-cran-xtable (1:1.8-4-2) ...
206s Setting up r-cran-cli (3.6.4-1) ...
206s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
206s Setting up r-cran-bitops (1.0-9-1) ...
206s Setting up r-bioc-biocversion (3.20.0-2) ...
206s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ...
206s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
206s Setting up gcc (4:14.2.0-1ubuntu1) ...
206s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
206s Setting up r-cran-askpass (1.2.1-1) ...
206s Setting up r-cran-fastmap (1.2.0-1) ...
206s Setting up r-cran-png (0.1-8-1build2) ...
206s Setting up r-bioc-biobase (2.66.0-2) ...
206s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
206s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
206s Setting up texlive-latex-base (2024.20250309-1) ...
206s Setting up r-cran-cpp11 (0.5.2-1) ...
206s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
206s Setting up r-cran-futile.logger (1.4.3-4build1) ...
206s Setting up r-bioc-limma (3.62.2+dfsg-1) ...
206s Setting up r-cran-later (1.4.1+dfsg-1) ...
206s Setting up r-cran-matrix (1.7-3-1) ...
206s Setting up r-cran-htmltools (0.5.8.1-1) ...
206s Setting up r-cran-tinytex (0.56-1) ...
206s Setting up r-cran-knitr (1.50+dfsg-1) ...
206s Setting up g++ (4:14.2.0-1ubuntu1) ...
206s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
206s Setting up r-cran-cachem (1.1.0-1) ...
206s Setting up r-cran-sass (0.4.9+dfsg-1) ...
206s Setting up build-essential (12.12ubuntu1) ...
206s Setting up r-bioc-iranges (2.40.1-3) ...
206s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
206s Setting up r-cran-restfulr (0.0.15-1) ...
206s Setting up r-cran-vctrs (0.6.5-1) ...
206s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
206s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
206s Setting up r-bioc-biocparallel (1.40.0-2) ...
206s Setting up r-bioc-edger (4.4.2+dfsg-1) ...
206s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
206s Setting up r-cran-fontawesome (0.5.3-1) ...
206s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
206s Setting up gfortran (4:14.2.0-1ubuntu1) ...
206s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
206s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
206s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
206s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
206s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
206s Setting up texlive-bibtex-extra (2024.20250309-2) ...
206s Setting up r-cran-httr (1.4.7+dfsg-1) ...
206s Setting up r-cran-memoise (2.0.1-1) ...
206s Setting up r-cran-promises (1.3.2+dfsg-1) ...
206s Setting up r-cran-blob (1.2.4-1) ...
206s Setting up r-bioc-xvector (0.46.0-2) ...
206s Setting up r-cran-rsqlite (2.3.9-1) ...
206s Setting up r-base-dev (4.5.0-3) ...
206s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
206s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ...
206s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
206s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
206s Setting up r-cran-bslib (0.9.0+dfsg-3) ...
206s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
206s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
206s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
206s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
206s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
206s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
206s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
206s Setting up r-cran-bookdown (0.42+dfsg-1) ...
206s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
206s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ...
206s Setting up r-bioc-annotationdbi (1.68.0-2) ...
206s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
206s Setting up r-bioc-genomicalignments (1.42.0-2) ...
206s Setting up r-bioc-org.hs.eg.db (3.20.0-3) ...
206s Setting up r-bioc-rtracklayer (1.66.0-2) ...
206s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
206s Setting up r-bioc-grohmm (1.40.3-2) ...
206s Processing triggers for libc-bin (2.41-6ubuntu1) ...
206s Processing triggers for man-db (2.13.0-1) ...
207s Processing triggers for install-info (7.1.1-1) ...
207s Processing triggers for tex-common (6.19) ...
207s Running updmap-sys. This may take some time... done.
208s Running mktexlsr /var/lib/texmf ... done.
208s Building format(s) --all.
247s 	This may take some time... done.
248s autopkgtest [15:20:32]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
248s autopkgtest [15:20:32]: test pkg-r-autopkgtest: [-----------------------
248s Test: Try to load the R library groHMM
248s 
248s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
248s Copyright (C) 2025 The R Foundation for Statistical Computing
248s Platform: s390x-ibm-linux-gnu
248s 
248s R is free software and comes with ABSOLUTELY NO WARRANTY.
248s You are welcome to redistribute it under certain conditions.
248s Type 'license()' or 'licence()' for distribution details.
248s 
248s R is a collaborative project with many contributors.
248s Type 'contributors()' for more information and
248s 'citation()' on how to cite R or R packages in publications.
248s 
248s Type 'demo()' for some demos, 'help()' for on-line help, or
248s 'help.start()' for an HTML browser interface to help.
248s Type 'q()' to quit R.
248s 
248s > library('groHMM')
248s Loading required package: MASS
248s Loading required package: parallel
248s Loading required package: S4Vectors
248s Loading required package: stats4
248s Loading required package: BiocGenerics
248s 
248s Attaching package: ‘BiocGenerics’
248s 
248s The following objects are masked from ‘package:stats’:
248s 
248s     IQR, mad, sd, var, xtabs
248s 
248s The following objects are masked from ‘package:base’:
248s 
248s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
248s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
248s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
248s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
248s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
248s     table, tapply, union, unique, unsplit, which.max, which.min
248s 
249s 
249s Attaching package: ‘S4Vectors’
249s 
249s The following object is masked from ‘package:utils’:
249s 
249s     findMatches
249s 
249s The following objects are masked from ‘package:base’:
249s 
249s     expand.grid, I, unname
249s 
249s Loading required package: IRanges
249s Loading required package: GenomeInfoDb
249s Loading required package: GenomicRanges
250s Loading required package: GenomicAlignments
250s Loading required package: SummarizedExperiment
250s Loading required package: MatrixGenerics
250s Loading required package: matrixStats
250s 
250s Attaching package: ‘MatrixGenerics’
250s 
250s The following objects are masked from ‘package:matrixStats’:
250s 
250s     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
250s     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
250s     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
250s     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
250s     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
250s     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
250s     colWeightedMeans, colWeightedMedians, colWeightedSds,
250s     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
250s     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
250s     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
250s     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
250s     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
250s     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
250s     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
250s     rowWeightedSds, rowWeightedVars
250s 
250s Loading required package: Biobase
250s Welcome to Bioconductor
250s 
250s     Vignettes contain introductory material; view with
250s     'browseVignettes()'. To cite Bioconductor, see
250s     'citation("Biobase")', and for packages 'citation("pkgname")'.
250s 
250s 
250s Attaching package: ‘Biobase’
250s 
250s The following object is masked from ‘package:MatrixGenerics’:
250s 
250s     rowMedians
250s 
250s The following objects are masked from ‘package:matrixStats’:
250s 
250s     anyMissing, rowMedians
250s 
253s Loading required package: Biostrings
253s Loading required package: XVector
253s 
253s Attaching package: ‘Biostrings’
253s 
253s The following object is masked from ‘package:base’:
253s 
253s     strsplit
253s 
253s Loading required package: Rsamtools
254s Loading required package: rtracklayer
255s > 
256s Other tests are currently unsupported!
256s They will be progressively added.
256s autopkgtest [15:20:40]: test pkg-r-autopkgtest: -----------------------]
256s autopkgtest [15:20:40]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
256s pkg-r-autopkgtest    PASS
257s autopkgtest [15:20:41]: @@@@@@@@@@@@@@@@@@@@ summary
257s pkg-r-autopkgtest    PASS
276s nova [W] Using flock in prodstack6-s390x
276s Creating nova instance adt-questing-s390x-r-bioc-grohmm-20250502-151624-juju-7f2275-prod-proposed-migration-environment-2-e09acc1c-1626-4fe0-ab03-c826b6350031 from image adt/ubuntu-questing-s390x-server-20250502.img (UUID 632ecfca-a19d-4f3a-af48-b7883fa0ccf2)...
276s nova [W] Timed out waiting for 73b5265f-b3cf-4a8f-96d7-f06f8a8c131b to get deleted.