0s autopkgtest [13:24:03]: starting date and time: 2025-05-02 13:24:03+0000 0s autopkgtest [13:24:03]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [13:24:03]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3_w5l9er/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest --apt-upgrade python-pyfaidx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.3.5-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-s390x-4.secgroup --name adt-questing-s390x-python-pyfaidx-20250502-132402-juju-7f2275-prod-proposed-migration-environment-20-f5c74027-cbd6-48e2-8fbc-5179bd7bcbe8 --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 132s autopkgtest [13:26:15]: testbed dpkg architecture: s390x 132s autopkgtest [13:26:15]: testbed apt version: 3.0.0 132s autopkgtest [13:26:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 133s autopkgtest [13:26:16]: testbed release detected to be: None 134s autopkgtest [13:26:17]: updating testbed package index (apt update) 135s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 135s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 135s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 135s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 135s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 135s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [171 kB] 135s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2029 kB] 135s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [207 kB] 135s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1182 kB] 135s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [9148 B] 138s Fetched 3752 kB in 4s (944 kB/s) 143s Reading package lists... 145s autopkgtest [13:26:28]: upgrading testbed (apt dist-upgrade and autopurge) 145s Reading package lists... 147s Building dependency tree... 147s Reading state information... 149s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 149s Starting 2 pkgProblemResolver with broken count: 0 149s Done 150s Entering ResolveByKeep 151s 151s Calculating upgrade... 151s The following packages will be upgraded: 151s htop libnpth0t64 libperl5.40 nano perl perl-base perl-modules-5.40 usb.ids 152s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 11.1 MB of archives. 152s After this operation, 1024 B disk space will be freed. 152s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libperl5.40 s390x 5.40.1-3 [4972 kB] 152s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl s390x 5.40.1-3 [262 kB] 152s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl-base s390x 5.40.1-3 [1954 kB] 152s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl-modules-5.40 all 5.40.1-3 [3217 kB] 153s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x libnpth0t64 s390x 1.8-3 [8778 B] 153s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x nano s390x 8.4-1 [299 kB] 153s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x usb.ids all 2025.04.01-1 [223 kB] 153s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x htop s390x 3.4.1-4 [189 kB] 155s Fetched 11.1 MB in 2s (7170 kB/s) 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 157s Preparing to unpack .../libperl5.40_5.40.1-3_s390x.deb ... 157s Unpacking libperl5.40:s390x (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 161s Preparing to unpack .../perl_5.40.1-3_s390x.deb ... 161s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 162s Preparing to unpack .../perl-base_5.40.1-3_s390x.deb ... 162s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 164s Setting up perl-base (5.40.1-3) ... 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 164s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 164s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 169s Preparing to unpack .../libnpth0t64_1.8-3_s390x.deb ... 169s Unpacking libnpth0t64:s390x (1.8-3) over (1.8-2) ... 169s Setting up libnpth0t64:s390x (1.8-3) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 169s Preparing to unpack .../archives/nano_8.4-1_s390x.deb ... 169s Unpacking nano (8.4-1) over (8.3-1) ... 171s Preparing to unpack .../usb.ids_2025.04.01-1_all.deb ... 171s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 171s Preparing to unpack .../htop_3.4.1-4_s390x.deb ... 171s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 172s Setting up htop (3.4.1-4) ... 172s Setting up usb.ids (2025.04.01-1) ... 172s Setting up nano (8.4-1) ... 172s Installing new version of config file /etc/nanorc ... 172s Setting up perl-modules-5.40 (5.40.1-3) ... 172s Setting up libperl5.40:s390x (5.40.1-3) ... 172s Setting up perl (5.40.1-3) ... 172s Processing triggers for libc-bin (2.41-6ubuntu1) ... 173s Processing triggers for man-db (2.13.0-1) ... 179s Processing triggers for install-info (7.1.1-1) ... 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 182s Starting pkgProblemResolver with broken count: 0 183s Starting 2 pkgProblemResolver with broken count: 0 183s Done 184s Solving dependencies... 185s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 189s autopkgtest [13:27:12]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr 6 13:39:00 UTC 2025 189s autopkgtest [13:27:12]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyfaidx 192s Get:1 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (dsc) [2544 B] 192s Get:2 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (tar) [96.5 kB] 192s Get:3 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (diff) [7096 B] 193s gpgv: Signature made Wed Oct 16 19:20:44 2024 UTC 193s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 193s gpgv: issuer "emollier@debian.org" 193s gpgv: Can't check signature: No public key 193s dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.3-1.dsc: no acceptable signature found 193s autopkgtest [13:27:16]: testing package python-pyfaidx version 0.8.1.3-1 193s autopkgtest [13:27:16]: build not needed 194s autopkgtest [13:27:17]: test run-unit-test: preparing testbed 195s Reading package lists... 196s Building dependency tree... 196s Reading state information... 197s Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 199s The following NEW packages will be installed: 199s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 199s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 199s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhtscodecs2 199s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 199s libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 199s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 199s python-pyfaidx-examples python3-all python3-biopython python3-cairo 199s python3-freetype python3-importlib-metadata python3-iniconfig python3-numpy 199s python3-numpy-dev python3-pil python3-pluggy python3-pyfaidx python3-pytest 199s python3-reportlab python3-rlpycairo sgml-base tabix w3c-sgml-lib x11-common 199s xfonts-encodings xfonts-utils xml-core 199s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 199s Need to get 29.7 MB of archives. 199s After this operation, 92.1 MB of additional disk space will be used. 199s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x python3-numpy-dev s390x 1:2.2.3+ds-5 [147 kB] 199s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 199s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB] 199s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 200s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x python3-numpy s390x 1:2.2.3+ds-5 [4396 kB] 200s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x sgml-base all 1.31 [11.4 kB] 200s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 200s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 200s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB] 200s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 200s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 200s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 200s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x xfonts-utils s390x 1:7.7+7 [101 kB] 200s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 200s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 200s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 200s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 200s Get:18 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 200s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 200s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 201s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB] 201s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 201s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB] 201s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 201s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 201s Get:26 http://ftpmaster.internal/ubuntu questing/universe s390x libhtscodecs2 s390x 1.6.1-2 [91.0 kB] 201s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 201s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 201s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 201s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 201s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libraqm0 s390x 0.10.2-1 [15.8 kB] 201s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 201s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 201s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 201s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 201s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libwebpdemux2 s390x 1.5.0-0.1 [12.6 kB] 201s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libwebpmux3 s390x 1.5.0-0.1 [25.8 kB] 201s Get:38 http://ftpmaster.internal/ubuntu questing/universe s390x python-pyfaidx-examples all 0.8.1.3-1 [38.6 kB] 201s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x python3-all s390x 3.13.3-1 [882 B] 201s Get:40 http://ftpmaster.internal/ubuntu questing/main s390x libopenjp2-7 s390x 2.5.3-2 [207 kB] 201s Get:41 http://ftpmaster.internal/ubuntu questing/main s390x python3-pil s390x 11.1.0-5build1 [498 kB] 201s Get:42 http://ftpmaster.internal/ubuntu questing/main s390x python3-cairo s390x 1.27.0-2 [120 kB] 201s Get:43 http://ftpmaster.internal/ubuntu questing/universe s390x python3-freetype all 2.5.1-1 [92.3 kB] 201s Get:44 http://ftpmaster.internal/ubuntu questing/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 201s Get:45 http://ftpmaster.internal/ubuntu questing/universe s390x python3-reportlab all 4.3.1-1 [1137 kB] 201s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x xml-core all 0.19 [20.3 kB] 201s Get:47 http://ftpmaster.internal/ubuntu questing/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 201s Get:48 http://ftpmaster.internal/ubuntu questing/universe s390x python3-biopython s390x 1.85+dfsg-2build1 [1745 kB] 201s Get:49 http://ftpmaster.internal/ubuntu questing/main s390x python3-importlib-metadata all 8.6.1-1 [20.7 kB] 201s Get:50 http://ftpmaster.internal/ubuntu questing/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 201s Get:51 http://ftpmaster.internal/ubuntu questing/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 201s Get:52 http://ftpmaster.internal/ubuntu questing/universe s390x python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 201s Get:53 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x python3-pytest all 8.3.5-2 [252 kB] 201s Get:54 http://ftpmaster.internal/ubuntu questing/universe s390x tabix s390x 1.21+ds-1 [546 kB] 204s Fetched 29.7 MB in 2s (12.9 MB/s) 204s Selecting previously unselected package python3-numpy-dev:s390x. 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 204s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_s390x.deb ... 204s Unpacking python3-numpy-dev:s390x (1:2.2.3+ds-5) ... 204s Selecting previously unselected package libblas3:s390x. 204s Preparing to unpack .../01-libblas3_3.12.1-2_s390x.deb ... 204s Unpacking libblas3:s390x (3.12.1-2) ... 204s Selecting previously unselected package libgfortran5:s390x. 204s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_s390x.deb ... 204s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ... 205s Selecting previously unselected package liblapack3:s390x. 205s Preparing to unpack .../03-liblapack3_3.12.1-2_s390x.deb ... 205s Unpacking liblapack3:s390x (3.12.1-2) ... 205s Selecting previously unselected package python3-numpy. 205s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_s390x.deb ... 205s Unpacking python3-numpy (1:2.2.3+ds-5) ... 207s Selecting previously unselected package sgml-base. 207s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 207s Unpacking sgml-base (1.31) ... 207s Selecting previously unselected package fonts-dejavu-mono. 207s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 207s Unpacking fonts-dejavu-mono (2.37-8) ... 207s Selecting previously unselected package fonts-dejavu-core. 207s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 207s Unpacking fonts-dejavu-core (2.37-8) ... 207s Selecting previously unselected package libfontenc1:s390x. 207s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_s390x.deb ... 207s Unpacking libfontenc1:s390x (1:1.1.8-1build1) ... 207s Selecting previously unselected package libfreetype6:s390x. 207s Preparing to unpack .../09-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 207s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 207s Selecting previously unselected package x11-common. 207s Preparing to unpack .../10-x11-common_1%3a7.7+23ubuntu4_all.deb ... 207s Unpacking x11-common (1:7.7+23ubuntu4) ... 207s Selecting previously unselected package xfonts-encodings. 207s Preparing to unpack .../11-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 207s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 207s Selecting previously unselected package xfonts-utils. 207s Preparing to unpack .../12-xfonts-utils_1%3a7.7+7_s390x.deb ... 207s Unpacking xfonts-utils (1:7.7+7) ... 208s Selecting previously unselected package fonts-urw-base35. 208s Preparing to unpack .../13-fonts-urw-base35_20200910-8_all.deb ... 208s Unpacking fonts-urw-base35 (20200910-8) ... 208s Selecting previously unselected package fontconfig-config. 208s Preparing to unpack .../14-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 210s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 210s Selecting previously unselected package libfontconfig1:s390x. 210s Preparing to unpack .../15-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 210s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 210s Selecting previously unselected package libpixman-1-0:s390x. 210s Preparing to unpack .../16-libpixman-1-0_0.44.0-3_s390x.deb ... 210s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 210s Selecting previously unselected package libxcb-render0:s390x. 210s Preparing to unpack .../17-libxcb-render0_1.17.0-2_s390x.deb ... 210s Unpacking libxcb-render0:s390x (1.17.0-2) ... 210s Selecting previously unselected package libxcb-shm0:s390x. 210s Preparing to unpack .../18-libxcb-shm0_1.17.0-2_s390x.deb ... 210s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 210s Selecting previously unselected package libxrender1:s390x. 210s Preparing to unpack .../19-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 210s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 210s Selecting previously unselected package libcairo2:s390x. 210s Preparing to unpack .../20-libcairo2_1.18.4-1_s390x.deb ... 210s Unpacking libcairo2:s390x (1.18.4-1) ... 210s Selecting previously unselected package libdeflate0:s390x. 210s Preparing to unpack .../21-libdeflate0_1.23-1_s390x.deb ... 210s Unpacking libdeflate0:s390x (1.23-1) ... 210s Selecting previously unselected package libgomp1:s390x. 210s Preparing to unpack .../22-libgomp1_15-20250404-0ubuntu1_s390x.deb ... 210s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ... 210s Selecting previously unselected package libgraphite2-3:s390x. 210s Preparing to unpack .../23-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 210s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 210s Selecting previously unselected package libharfbuzz0b:s390x. 210s Preparing to unpack .../24-libharfbuzz0b_10.2.0-1_s390x.deb ... 210s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 210s Selecting previously unselected package libhtscodecs2:s390x. 210s Preparing to unpack .../25-libhtscodecs2_1.6.1-2_s390x.deb ... 210s Unpacking libhtscodecs2:s390x (1.6.1-2) ... 210s Selecting previously unselected package libimagequant0:s390x. 210s Preparing to unpack .../26-libimagequant0_2.18.0-1build1_s390x.deb ... 210s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 210s Selecting previously unselected package libjpeg-turbo8:s390x. 210s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 210s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 211s Selecting previously unselected package libjpeg8:s390x. 211s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_s390x.deb ... 211s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 211s Selecting previously unselected package liblcms2-2:s390x. 211s Preparing to unpack .../29-liblcms2-2_2.16-2_s390x.deb ... 211s Unpacking liblcms2-2:s390x (2.16-2) ... 211s Selecting previously unselected package libraqm0:s390x. 211s Preparing to unpack .../30-libraqm0_0.10.2-1_s390x.deb ... 211s Unpacking libraqm0:s390x (0.10.2-1) ... 211s Selecting previously unselected package libsharpyuv0:s390x. 211s Preparing to unpack .../31-libsharpyuv0_1.5.0-0.1_s390x.deb ... 211s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 211s Selecting previously unselected package libjbig0:s390x. 211s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 211s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 211s Selecting previously unselected package libwebp7:s390x. 211s Preparing to unpack .../33-libwebp7_1.5.0-0.1_s390x.deb ... 211s Unpacking libwebp7:s390x (1.5.0-0.1) ... 211s Selecting previously unselected package libtiff6:s390x. 211s Preparing to unpack .../34-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 211s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 211s Selecting previously unselected package libwebpdemux2:s390x. 211s Preparing to unpack .../35-libwebpdemux2_1.5.0-0.1_s390x.deb ... 211s Unpacking libwebpdemux2:s390x (1.5.0-0.1) ... 211s Selecting previously unselected package libwebpmux3:s390x. 211s Preparing to unpack .../36-libwebpmux3_1.5.0-0.1_s390x.deb ... 211s Unpacking libwebpmux3:s390x (1.5.0-0.1) ... 211s Selecting previously unselected package python-pyfaidx-examples. 211s Preparing to unpack .../37-python-pyfaidx-examples_0.8.1.3-1_all.deb ... 211s Unpacking python-pyfaidx-examples (0.8.1.3-1) ... 211s Selecting previously unselected package python3-all. 211s Preparing to unpack .../38-python3-all_3.13.3-1_s390x.deb ... 211s Unpacking python3-all (3.13.3-1) ... 211s Selecting previously unselected package libopenjp2-7:s390x. 211s Preparing to unpack .../39-libopenjp2-7_2.5.3-2_s390x.deb ... 211s Unpacking libopenjp2-7:s390x (2.5.3-2) ... 212s Selecting previously unselected package python3-pil:s390x. 212s Preparing to unpack .../40-python3-pil_11.1.0-5build1_s390x.deb ... 212s Unpacking python3-pil:s390x (11.1.0-5build1) ... 212s Selecting previously unselected package python3-cairo. 212s Preparing to unpack .../41-python3-cairo_1.27.0-2_s390x.deb ... 212s Unpacking python3-cairo (1.27.0-2) ... 212s Selecting previously unselected package python3-freetype. 212s Preparing to unpack .../42-python3-freetype_2.5.1-1_all.deb ... 212s Unpacking python3-freetype (2.5.1-1) ... 212s Selecting previously unselected package python3-rlpycairo. 212s Preparing to unpack .../43-python3-rlpycairo_0.3.0-3_all.deb ... 212s Unpacking python3-rlpycairo (0.3.0-3) ... 212s Selecting previously unselected package python3-reportlab. 212s Preparing to unpack .../44-python3-reportlab_4.3.1-1_all.deb ... 212s Unpacking python3-reportlab (4.3.1-1) ... 212s Selecting previously unselected package xml-core. 212s Preparing to unpack .../45-xml-core_0.19_all.deb ... 212s Unpacking xml-core (0.19) ... 213s Selecting previously unselected package w3c-sgml-lib. 213s Preparing to unpack .../46-w3c-sgml-lib_1.3-3_all.deb ... 213s Unpacking w3c-sgml-lib (1.3-3) ... 213s Selecting previously unselected package python3-biopython. 213s Preparing to unpack .../47-python3-biopython_1.85+dfsg-2build1_s390x.deb ... 213s Unpacking python3-biopython (1.85+dfsg-2build1) ... 214s Selecting previously unselected package python3-importlib-metadata. 214s Preparing to unpack .../48-python3-importlib-metadata_8.6.1-1_all.deb ... 214s Unpacking python3-importlib-metadata (8.6.1-1) ... 214s Selecting previously unselected package python3-iniconfig. 214s Preparing to unpack .../49-python3-iniconfig_1.1.1-2_all.deb ... 214s Unpacking python3-iniconfig (1.1.1-2) ... 214s Selecting previously unselected package python3-pluggy. 214s Preparing to unpack .../50-python3-pluggy_1.5.0-1_all.deb ... 214s Unpacking python3-pluggy (1.5.0-1) ... 214s Selecting previously unselected package python3-pyfaidx. 214s Preparing to unpack .../51-python3-pyfaidx_0.8.1.3-1_all.deb ... 214s Unpacking python3-pyfaidx (0.8.1.3-1) ... 214s Selecting previously unselected package python3-pytest. 214s Preparing to unpack .../52-python3-pytest_8.3.5-2_all.deb ... 214s Unpacking python3-pytest (8.3.5-2) ... 214s Selecting previously unselected package tabix. 215s Preparing to unpack .../53-tabix_1.21+ds-1_s390x.deb ... 215s Unpacking tabix (1.21+ds-1) ... 215s Setting up libhtscodecs2:s390x (1.6.1-2) ... 215s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 215s Setting up liblcms2-2:s390x (2.16-2) ... 215s Setting up python3-iniconfig (1.1.1-2) ... 216s Setting up libpixman-1-0:s390x (0.44.0-3) ... 216s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 216s Setting up python3-importlib-metadata (8.6.1-1) ... 216s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 216s Setting up python-pyfaidx-examples (0.8.1.3-1) ... 216s Setting up libxcb-render0:s390x (1.17.0-2) ... 216s Setting up x11-common (1:7.7+23ubuntu4) ... 218s Setting up libdeflate0:s390x (1.23-1) ... 218s Setting up python3-all (3.13.3-1) ... 218s Setting up libxcb-shm0:s390x (1.17.0-2) ... 218s Setting up libgomp1:s390x (15-20250404-0ubuntu1) ... 218s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 218s Setting up libfontenc1:s390x (1:1.1.8-1build1) ... 218s Setting up libblas3:s390x (3.12.1-2) ... 218s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 218s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 218s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 218s Setting up libimagequant0:s390x (2.18.0-1build1) ... 218s Setting up fonts-dejavu-mono (2.37-8) ... 218s Setting up python3-numpy-dev:s390x (1:2.2.3+ds-5) ... 218s Setting up fonts-dejavu-core (2.37-8) ... 218s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 218s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ... 218s Setting up python3-pluggy (1.5.0-1) ... 218s Setting up libwebp7:s390x (1.5.0-0.1) ... 218s Setting up libopenjp2-7:s390x (2.5.3-2) ... 218s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 218s Setting up sgml-base (1.31) ... 218s Setting up libwebpmux3:s390x (1.5.0-0.1) ... 218s Setting up tabix (1.21+ds-1) ... 218s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 218s Setting up python3-pyfaidx (0.8.1.3-1) ... 219s Setting up liblapack3:s390x (3.12.1-2) ... 219s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 219s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 219s Setting up python3-pytest (8.3.5-2) ... 219s Setting up libwebpdemux2:s390x (1.5.0-0.1) ... 219s Setting up python3-freetype (2.5.1-1) ... 220s Setting up xfonts-utils (1:7.7+7) ... 220s Setting up libraqm0:s390x (0.10.2-1) ... 220s Setting up python3-numpy (1:2.2.3+ds-5) ... 232s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 232s Setting up xml-core (0.19) ... 234s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 234s Setting up fonts-urw-base35 (20200910-8) ... 236s Setting up libcairo2:s390x (1.18.4-1) ... 236s Setting up python3-pil:s390x (11.1.0-5build1) ... 238s Setting up python3-cairo (1.27.0-2) ... 239s Setting up python3-rlpycairo (0.3.0-3) ... 240s Setting up python3-reportlab (4.3.1-1) ... 244s Processing triggers for libc-bin (2.41-6ubuntu1) ... 244s Processing triggers for man-db (2.13.0-1) ... 253s Processing triggers for sgml-base (1.31) ... 253s Setting up w3c-sgml-lib (1.3-3) ... 417s Setting up python3-biopython (1.85+dfsg-2build1) ... 430s autopkgtest [13:31:13]: test run-unit-test: [----------------------- 431s Testing with python3.13 in /tmp/autopkgtest.ECuCwv/build.QCE/src: 435s ============================= test session starts ============================== 435s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 435s cachedir: .pytest_cache 435s rootdir: /tmp/autopkgtest.ECuCwv/build.QCE/src 435s configfile: pyproject.toml 435s plugins: typeguard-4.4.2 438s collecting ... collected 136 items 438s 438s tests/test_FastaRecord.py::test_sequence_uppercase PASSED [ 0%] 438s tests/test_FastaRecord.py::test_long_names PASSED [ 1%] 438s tests/test_FastaRecord.py::test_issue_62 PASSED [ 2%] 438s tests/test_FastaRecord.py::test_unpadded_length PASSED [ 2%] 439s tests/test_FastaRecord.py::test_numpy_array PASSED [ 3%] 439s tests/test_FastaRecord_iter.py::test_fetch_whole_fasta PASSED [ 4%] 439s tests/test_FastaRecord_iter.py::test_line_len PASSED [ 5%] 439s tests/test_FastaRecord_iter.py::test_reverse_iter PASSED [ 5%] 439s tests/test_FastaVariant.py::test_fetch_variant SKIPPED (pysam not in...) [ 6%] 439s tests/test_FastaVariant.py::test_fetch_hom_variant SKIPPED (pysam no...) [ 7%] 439s tests/test_FastaVariant.py::test_fetch_het_variant SKIPPED (pysam no...) [ 8%] 439s tests/test_FastaVariant.py::test_fetch_chr_not_in_vcf SKIPPED (pysam...) [ 8%] 439s tests/test_FastaVariant.py::test_all_pos SKIPPED (pysam not installed.) [ 9%] 439s tests/test_FastaVariant.py::test_all_diff SKIPPED (pysam not installed.) [ 10%] 439s tests/test_Fasta_bgzip.py::test_build_issue_126 XFAIL [ 11%] 439s tests/test_Fasta_bgzip.py::test_integer_slice PASSED [ 11%] 439s tests/test_Fasta_bgzip.py::test_integer_index PASSED [ 12%] 439s tests/test_Fasta_bgzip.py::test_fetch_whole_fasta PASSED [ 13%] 439s tests/test_Fasta_bgzip.py::test_line_len PASSED [ 13%] 439s tests/test_Fasta_bgzip.py::test_mutable_bgzf PASSED [ 14%] 440s tests/test_Fasta_bgzip.py::test_long_names XFAIL [ 15%] 440s tests/test_Fasta_bgzip.py::test_fetch_whole_entry PASSED [ 16%] 440s tests/test_Fasta_bgzip.py::test_fetch_middle PASSED [ 16%] 440s tests/test_Fasta_bgzip.py::test_fetch_end PASSED [ 17%] 440s tests/test_Fasta_bgzip.py::test_fetch_border PASSED [ 18%] 440s tests/test_Fasta_bgzip.py::test_rev PASSED [ 19%] 440s tests/test_Fasta_bgzip.py::test_fetch_past_bounds PASSED [ 19%] 440s tests/test_Fasta_bgzip.py::test_fetch_negative PASSED [ 20%] 440s tests/test_Fasta_bgzip.py::test_fetch_reversed_coordinates PASSED [ 21%] 440s tests/test_Fasta_bgzip.py::test_fetch_keyerror PASSED [ 22%] 440s tests/test_Fasta_bgzip.py::test_blank_string PASSED [ 22%] 440s tests/test_Fasta_bgzip.py::test_slice_from_beginning PASSED [ 23%] 440s tests/test_Fasta_bgzip.py::test_slice_from_end PASSED [ 24%] 440s tests/test_Fasta_bgzip.py::test_issue_74_start PASSED [ 25%] 440s tests/test_Fasta_bgzip.py::test_issue_74_consistency PASSED [ 25%] 440s tests/test_Fasta_bgzip.py::test_issue_74_end_faidx PASSED [ 26%] 440s tests/test_Fasta_bgzip.py::test_issue_74_end_fasta PASSED [ 27%] 440s tests/test_Fasta_bgzip.py::test_issue_79_fix PASSED [ 27%] 440s tests/test_Fasta_bgzip.py::test_issue_79_fix_negate PASSED [ 28%] 440s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false PASSED [ 29%] 440s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false_negate PASSED [ 30%] 440s tests/test_Fasta_bgzip.py::test_fetch_border_padded PASSED [ 30%] 440s tests/test_Fasta_integer_index.py::test_integer_slice PASSED [ 31%] 440s tests/test_Fasta_integer_index.py::test_integer_index PASSED [ 32%] 440s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads PASSED [ 33%] 441s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads_and_writes PASSED [ 33%] 442s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_writes PASSED [ 34%] 442s tests/test_Path.py::test_Faidx PASSED [ 35%] 442s tests/test_Path.py::test_Fasta PASSED [ 36%] 442s tests/test_bio_seqio.py::test_fetch_whole_entry PASSED [ 36%] 442s tests/test_bio_seqio.py::test_slice_whole_entry PASSED [ 37%] 442s tests/test_bio_seqio.py::test_revcomp_whole_entry PASSED [ 38%] 442s tests/test_faidx.py::test_short_line_lengths PASSED [ 38%] 442s tests/test_faidx.py::test_fetch_whole_file PASSED [ 39%] 442s tests/test_faidx.py::test_split_entry PASSED [ 40%] 442s tests/test_faidx.py::test_fetch_error PASSED [ 41%] 442s tests/test_faidx.py::test_key_warning PASSED [ 41%] 442s tests/test_faidx.py::test_auto_strand PASSED [ 42%] 442s tests/test_faidx.py::test_regexp PASSED [ 43%] 442s tests/test_faidx.py::test_not_regexp PASSED [ 44%] 442s tests/test_faidx.py::test_not_regexp_multi PASSED [ 44%] 442s tests/test_feature_bounds_check.py::test_index_zero_length PASSED [ 45%] 442s tests/test_feature_bounds_check.py::test_fetch_zero_length PASSED [ 46%] 442s tests/test_feature_bounds_check.py::test_as_raw_zero_length_subsequence PASSED [ 47%] 442s tests/test_feature_bounds_check.py::test_zero_length_subsequence PASSED [ 47%] 442s tests/test_feature_bounds_check.py::test_fetch_whole_entry PASSED [ 48%] 442s tests/test_feature_bounds_check.py::test_fetch_middle PASSED [ 49%] 442s tests/test_feature_bounds_check.py::test_fetch_end PASSED [ 50%] 442s tests/test_feature_bounds_check.py::test_fetch_border PASSED [ 50%] 442s tests/test_feature_bounds_check.py::test_rev PASSED [ 51%] 442s tests/test_feature_bounds_check.py::test_fetch_past_bounds PASSED [ 52%] 442s tests/test_feature_bounds_check.py::test_fetch_negative PASSED [ 52%] 442s tests/test_feature_bounds_check.py::test_fetch_reversed_coordinates PASSED [ 53%] 442s tests/test_feature_bounds_check.py::test_fetch_keyerror PASSED [ 54%] 442s tests/test_feature_bounds_check.py::test_blank_string PASSED [ 55%] 442s tests/test_feature_bounds_check.py::test_slice_from_beginning PASSED [ 55%] 442s tests/test_feature_bounds_check.py::test_slice_from_end PASSED [ 56%] 442s tests/test_feature_bounds_check.py::test_issue_74_start PASSED [ 57%] 442s tests/test_feature_bounds_check.py::test_issue_74_consistency PASSED [ 58%] 442s tests/test_feature_bounds_check.py::test_issue_74_end_faidx PASSED [ 58%] 442s tests/test_feature_bounds_check.py::test_issue_74_end_fasta PASSED [ 59%] 442s tests/test_feature_bounds_check.py::test_issue_79_fix PASSED [ 60%] 442s tests/test_feature_bounds_check.py::test_issue_79_fix_negate PASSED [ 61%] 442s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false PASSED [ 61%] 442s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false_negate PASSED [ 62%] 442s tests/test_feature_default_seq.py::test_fetch_border_padded PASSED [ 63%] 442s tests/test_feature_indexing.py::test_version_issue_206 PASSED [ 63%] 442s tests/test_feature_indexing.py::test_build PASSED [ 64%] 442s tests/test_feature_indexing.py::test_build_issue_141 PASSED [ 65%] 442s tests/test_feature_indexing.py::test_build_issue_111 PASSED [ 66%] 442s tests/test_feature_indexing.py::test_order PASSED [ 66%] 452s tests/test_feature_indexing.py::test_valgrind_short_lines PASSED [ 67%] 465s tests/test_feature_indexing.py::test_valgrind_long_lines PASSED [ 68%] 476s tests/test_feature_indexing.py::test_valgrind_blank_lines PASSED [ 69%] 478s tests/test_feature_indexing.py::test_reindex_on_modification PASSED [ 69%] 478s tests/test_feature_indexing.py::test_build_issue_83 PASSED [ 70%] 478s tests/test_feature_indexing.py::test_build_issue_96_fail_build_faidx PASSED [ 71%] 478s tests/test_feature_indexing.py::test_build_issue_96_fail_read_malformed_index_duplicate_key PASSED [ 72%] 478s tests/test_feature_indexing.py::test_read_back_index PASSED [ 72%] 478s tests/test_feature_indexing.py::test_issue_134_no_build_index PASSED [ 73%] 478s tests/test_feature_indexing.py::test_issue_144_no_defline PASSED [ 74%] 478s tests/test_feature_key_function.py::test_keys PASSED [ 75%] 478s tests/test_feature_key_function.py::test_key_function_by_dictionary_get_key PASSED [ 75%] 478s tests/test_feature_key_function.py::test_key_function_by_fetch PASSED [ 76%] 478s tests/test_feature_key_function.py::test_duplicated_keys PASSED [ 77%] 478s tests/test_feature_key_function.py::test_duplicated_keys_shortest PASSED [ 77%] 479s tests/test_feature_key_function.py::test_duplicated_keys_longest PASSED [ 78%] 479s tests/test_feature_read_ahead_buffer.py::test_buffer_false PASSED [ 79%] 479s tests/test_feature_read_ahead_buffer.py::test_buffer_true PASSED [ 80%] 479s tests/test_feature_read_ahead_buffer.py::test_buffer_exceed PASSED [ 80%] 479s tests/test_feature_read_ahead_buffer.py::test_bounds_error PASSED [ 81%] 479s tests/test_feature_read_ahead_buffer.py::test_buffer_value PASSED [ 82%] 479s tests/test_feature_sequence_as_raw.py::test_as_raw_false PASSED [ 83%] 479s tests/test_feature_sequence_as_raw.py::test_as_raw_true PASSED [ 83%] 479s tests/test_feature_sequence_as_raw.py::test_as_raw_false_error PASSED [ 84%] 479s tests/test_feature_sequence_as_raw.py::test_as_raw_true_error PASSED [ 85%] 479s tests/test_feature_sequence_as_raw.py::test_as_raw_type_when_blen_lt_0 PASSED [ 86%] 479s tests/test_feature_spliced_seq.py::test_split_seq PASSED [ 86%] 479s tests/test_feature_spliced_seq.py::test_get_seq_rc PASSED [ 87%] 479s tests/test_feature_split_char.py::test_keys PASSED [ 88%] 479s tests/test_feature_split_char.py::test_key_function_by_dictionary_get_key PASSED [ 88%] 479s tests/test_feature_split_char.py::test_key_function_by_fetch PASSED [ 89%] 479s tests/test_feature_split_char.py::test_stop PASSED [ 90%] 479s tests/test_fsspec.py::test_fsspec_fetch_whole_file SKIPPED (uncondit...) [ 91%] 479s tests/test_fsspec.py::test_fsspec_default_index SKIPPED (uncondition...) [ 91%] 479s tests/test_fsspec.py::test_fsspec_local_index SKIPPED (unconditional...) [ 92%] 479s tests/test_fsspec.py::test_fsspec_remote_index SKIPPED (unconditiona...) [ 93%] 479s tests/test_sequence_class.py::test_negate PASSED [ 94%] 479s tests/test_sequence_class.py::test_negate_metadata PASSED [ 94%] 479s tests/test_sequence_class.py::test_seq_invalid PASSED [ 95%] 479s tests/test_sequence_class.py::test_integer_index PASSED [ 96%] 479s tests/test_sequence_class.py::test_slice_index PASSED [ 97%] 479s tests/test_sequence_class.py::test_comp_invalid PASSED [ 97%] 479s tests/test_sequence_class.py::test_check_coordinates PASSED [ 98%] 479s tests/test_sequence_class.py::test_comp_valid PASSED [ 99%] 479s tests/test_sequence_class.py::test_comp_empty PASSED [100%] 479s 479s ================= 124 passed, 10 skipped, 2 xfailed in 43.54s ================== 479s autopkgtest [13:32:02]: test run-unit-test: -----------------------] 481s run-unit-test PASS 481s autopkgtest [13:32:04]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 481s autopkgtest [13:32:04]: test autodep8-python3: preparing testbed 705s autopkgtest [13:35:48]: testbed dpkg architecture: s390x 705s autopkgtest [13:35:48]: testbed apt version: 3.0.0 706s autopkgtest [13:35:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 706s autopkgtest [13:35:49]: testbed release detected to be: questing 707s autopkgtest [13:35:50]: updating testbed package index (apt update) 707s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 707s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 707s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 707s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 707s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2029 kB] 708s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 708s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [171 kB] 708s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [207 kB] 708s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1182 kB] 708s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [9148 B] 712s Fetched 3752 kB in 4s (892 kB/s) 717s Reading package lists... 718s autopkgtest [13:36:01]: upgrading testbed (apt dist-upgrade and autopurge) 719s Reading package lists... 720s Building dependency tree... 720s Reading state information... 721s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 721s Starting 2 pkgProblemResolver with broken count: 0 721s Done 723s Entering ResolveByKeep 724s 724s Calculating upgrade... 725s The following packages will be upgraded: 725s htop libnpth0t64 libperl5.40 nano perl perl-base perl-modules-5.40 usb.ids 726s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 726s Need to get 11.1 MB of archives. 726s After this operation, 1024 B disk space will be freed. 726s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libperl5.40 s390x 5.40.1-3 [4972 kB] 726s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl s390x 5.40.1-3 [262 kB] 726s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl-base s390x 5.40.1-3 [1954 kB] 727s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl-modules-5.40 all 5.40.1-3 [3217 kB] 727s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x libnpth0t64 s390x 1.8-3 [8778 B] 727s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x nano s390x 8.4-1 [299 kB] 727s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x usb.ids all 2025.04.01-1 [223 kB] 727s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x htop s390x 3.4.1-4 [189 kB] 730s Fetched 11.1 MB in 1s (11.0 MB/s) 733s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 733s Preparing to unpack .../libperl5.40_5.40.1-3_s390x.deb ... 733s Unpacking libperl5.40:s390x (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 735s Preparing to unpack .../perl_5.40.1-3_s390x.deb ... 735s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 735s Preparing to unpack .../perl-base_5.40.1-3_s390x.deb ... 735s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 738s Setting up perl-base (5.40.1-3) ... 738s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 738s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 738s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 744s Preparing to unpack .../libnpth0t64_1.8-3_s390x.deb ... 744s Unpacking libnpth0t64:s390x (1.8-3) over (1.8-2) ... 744s Setting up libnpth0t64:s390x (1.8-3) ... 744s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 744s Preparing to unpack .../archives/nano_8.4-1_s390x.deb ... 744s Unpacking nano (8.4-1) over (8.3-1) ... 745s Preparing to unpack .../usb.ids_2025.04.01-1_all.deb ... 745s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 745s Preparing to unpack .../htop_3.4.1-4_s390x.deb ... 745s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 745s Setting up htop (3.4.1-4) ... 746s Setting up usb.ids (2025.04.01-1) ... 746s Setting up nano (8.4-1) ... 746s Installing new version of config file /etc/nanorc ... 746s Setting up perl-modules-5.40 (5.40.1-3) ... 746s Setting up libperl5.40:s390x (5.40.1-3) ... 746s Setting up perl (5.40.1-3) ... 746s Processing triggers for libc-bin (2.41-6ubuntu1) ... 747s Processing triggers for man-db (2.13.0-1) ... 755s Processing triggers for install-info (7.1.1-1) ... 757s Reading package lists... 758s Building dependency tree... 758s Reading state information... 758s Starting pkgProblemResolver with broken count: 0 759s Starting 2 pkgProblemResolver with broken count: 0 759s Done 759s Solving dependencies... 761s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 765s Reading package lists... 767s Building dependency tree... 767s Reading state information... 767s Starting pkgProblemResolver with broken count: 0 768s Starting 2 pkgProblemResolver with broken count: 0 768s Done 769s The following NEW packages will be installed: 769s python3-all python3-importlib-metadata python3-pyfaidx 769s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 769s Need to get 51.3 kB of archives. 769s After this operation, 223 kB of additional disk space will be used. 769s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x python3-all s390x 3.13.3-1 [882 B] 769s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x python3-importlib-metadata all 8.6.1-1 [20.7 kB] 769s Get:3 http://ftpmaster.internal/ubuntu questing/universe s390x python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 771s Fetched 51.3 kB in 0s (158 kB/s) 772s Selecting previously unselected package python3-all. 772s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 772s Preparing to unpack .../python3-all_3.13.3-1_s390x.deb ... 772s Unpacking python3-all (3.13.3-1) ... 772s Selecting previously unselected package python3-importlib-metadata. 772s Preparing to unpack .../python3-importlib-metadata_8.6.1-1_all.deb ... 772s Unpacking python3-importlib-metadata (8.6.1-1) ... 772s Selecting previously unselected package python3-pyfaidx. 772s Preparing to unpack .../python3-pyfaidx_0.8.1.3-1_all.deb ... 772s Unpacking python3-pyfaidx (0.8.1.3-1) ... 772s Setting up python3-importlib-metadata (8.6.1-1) ... 773s Setting up python3-all (3.13.3-1) ... 773s Setting up python3-pyfaidx (0.8.1.3-1) ... 774s Processing triggers for man-db (2.13.0-1) ... 779s autopkgtest [13:37:02]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyfaidx; print(pyfaidx)" ; done 779s autopkgtest [13:37:02]: test autodep8-python3: [----------------------- 781s Testing with python3.13: 781s 781s autopkgtest [13:37:04]: test autodep8-python3: -----------------------] 782s autopkgtest [13:37:05]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 782s autodep8-python3 PASS (superficial) 782s autopkgtest [13:37:05]: @@@@@@@@@@@@@@@@@@@@ summary 782s run-unit-test PASS 782s autodep8-python3 PASS (superficial) 798s nova [W] Using flock in prodstack7-s390x 798s Creating nova instance adt-questing-s390x-python-pyfaidx-20250502-132402-juju-7f2275-prod-proposed-migration-environment-20-f5c74027-cbd6-48e2-8fbc-5179bd7bcbe8 from image adt/ubuntu-questing-s390x-server-20250501.img (UUID 2a693762-e567-4bbe-9838-630e77f0775f)... 798s nova [W] Timed out waiting for 1875ded8-e130-4156-aebf-e41caa9b86a4 to get deleted. 798s nova [W] Using flock in prodstack7-s390x 798s Creating nova instance adt-questing-s390x-python-pyfaidx-20250502-132402-juju-7f2275-prod-proposed-migration-environment-20-f5c74027-cbd6-48e2-8fbc-5179bd7bcbe8 from image adt/ubuntu-questing-s390x-server-20250501.img (UUID 2a693762-e567-4bbe-9838-630e77f0775f)... 798s nova [W] Timed out waiting for 7877ea9c-f0f8-4a57-9fee-aa5159b0e506 to get deleted.