0s autopkgtest [15:42:35]: starting date and time: 2025-07-03 15:42:35+0000 0s autopkgtest [15:42:35]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [15:42:35]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4suwitr9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python-anndata --apt-upgrade python-anndata --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python-anndata/0.12.0~rc1-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-5.secgroup --name adt-questing-s390x-python-anndata-20250703-154235-juju-7f2275-prod-proposed-migration-environment-20-888a6498-7cb7-40e9-ab17-05c9162bacf5 --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-questing-s390x-python-anndata-20250703-154235-juju-7f2275-prod-proposed-migration-environment-20-888a6498-7cb7-40e9-ab17-05c9162bacf5 from image adt/ubuntu-questing-s390x-server-20250703.img (UUID 8c5f5de3-6fe2-43ad-80a7-e51f4d8bb7a5)... 37s autopkgtest [15:43:12]: testbed dpkg architecture: s390x 37s autopkgtest [15:43:12]: testbed apt version: 3.1.2 37s autopkgtest [15:43:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 37s autopkgtest [15:43:12]: testbed release detected to be: None 38s autopkgtest [15:43:13]: updating testbed package index (apt update) 39s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [249 kB] 39s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 39s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 39s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 39s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [357 kB] 40s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [16.8 kB] 40s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [27.4 kB] 40s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [37.7 kB] 40s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [237 kB] 40s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [4452 B] 40s Fetched 930 kB in 2s (525 kB/s) 41s Reading package lists... 41s autopkgtest [15:43:16]: upgrading testbed (apt dist-upgrade and autopurge) 41s Reading package lists... 42s Building dependency tree... 42s Reading state information... 42s Calculating upgrade... 42s The following packages will be upgraded: 42s libdrm-amdgpu1 libdrm-common libdrm2 libpython3.13 libpython3.13-minimal 42s libpython3.13-stdlib python3.13 python3.13-gdbm python3.13-minimal 42s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 42s Need to get 8684 kB of archives. 42s After this operation, 9216 B disk space will be freed. 42s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x python3.13 s390x 3.13.5-2 [745 kB] 43s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x python3.13-minimal s390x 3.13.5-2 [2374 kB] 44s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x libpython3.13 s390x 3.13.5-2 [2522 kB] 45s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x libpython3.13-stdlib s390x 3.13.5-2 [2054 kB] 47s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x libpython3.13-minimal s390x 3.13.5-2 [882 kB] 47s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x libdrm-common all 2.4.125-1 [9012 B] 47s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x libdrm2 s390x 2.4.125-1 [43.9 kB] 48s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libdrm-amdgpu1 s390x 2.4.125-1 [21.8 kB] 48s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x python3.13-gdbm s390x 3.13.5-2 [32.1 kB] 48s Fetched 8684 kB in 6s (1482 kB/s) 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82480 files and directories currently installed.) 48s Preparing to unpack .../0-python3.13_3.13.5-2_s390x.deb ... 48s Unpacking python3.13 (3.13.5-2) over (3.13.5-1) ... 48s Preparing to unpack .../1-python3.13-minimal_3.13.5-2_s390x.deb ... 48s Unpacking python3.13-minimal (3.13.5-2) over (3.13.5-1) ... 48s Preparing to unpack .../2-libpython3.13_3.13.5-2_s390x.deb ... 48s Unpacking libpython3.13:s390x (3.13.5-2) over (3.13.5-1) ... 48s Preparing to unpack .../3-libpython3.13-stdlib_3.13.5-2_s390x.deb ... 48s Unpacking libpython3.13-stdlib:s390x (3.13.5-2) over (3.13.5-1) ... 48s Preparing to unpack .../4-libpython3.13-minimal_3.13.5-2_s390x.deb ... 48s Unpacking libpython3.13-minimal:s390x (3.13.5-2) over (3.13.5-1) ... 48s Preparing to unpack .../5-libdrm-common_2.4.125-1_all.deb ... 48s Unpacking libdrm-common (2.4.125-1) over (2.4.124-2) ... 48s Preparing to unpack .../6-libdrm2_2.4.125-1_s390x.deb ... 48s Unpacking libdrm2:s390x (2.4.125-1) over (2.4.124-2) ... 48s Preparing to unpack .../7-libdrm-amdgpu1_2.4.125-1_s390x.deb ... 48s Unpacking libdrm-amdgpu1:s390x (2.4.125-1) over (2.4.124-2) ... 48s Preparing to unpack .../8-python3.13-gdbm_3.13.5-2_s390x.deb ... 48s Unpacking python3.13-gdbm (3.13.5-2) over (3.13.5-1) ... 48s Setting up libpython3.13-minimal:s390x (3.13.5-2) ... 48s Setting up python3.13-minimal (3.13.5-2) ... 49s Setting up libdrm-common (2.4.125-1) ... 49s Setting up libpython3.13-stdlib:s390x (3.13.5-2) ... 49s Setting up python3.13-gdbm (3.13.5-2) ... 49s Setting up libpython3.13:s390x (3.13.5-2) ... 49s Setting up python3.13 (3.13.5-2) ... 50s Setting up libdrm2:s390x (2.4.125-1) ... 50s Setting up libdrm-amdgpu1:s390x (2.4.125-1) ... 50s Processing triggers for systemd (257.6-1ubuntu1) ... 50s Processing triggers for man-db (2.13.1-1) ... 50s Processing triggers for libc-bin (2.41-6ubuntu2) ... 50s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Solving dependencies... 51s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s autopkgtest [15:43:28]: testbed running kernel: Linux 6.15.0-3-generic #3-Ubuntu SMP Wed Jun 4 07:31:50 UTC 2025 54s autopkgtest [15:43:29]: @@@@@@@@@@@@@@@@@@@@ apt-source python-anndata 56s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/universe python-anndata 0.12.0~rc1-1 (dsc) [3137 B] 56s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/universe python-anndata 0.12.0~rc1-1 (tar) [575 kB] 56s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/universe python-anndata 0.12.0~rc1-1 (diff) [6956 B] 57s gpgv: Signature made Wed Jul 2 21:48:07 2025 UTC 57s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 57s gpgv: issuer "tchet@debian.org" 57s gpgv: Can't check signature: No public key 57s dpkg-source: warning: cannot verify inline signature for ./python-anndata_0.12.0~rc1-1.dsc: no acceptable signature found 57s autopkgtest [15:43:32]: testing package python-anndata version 0.12.0~rc1-1 57s autopkgtest [15:43:32]: build not needed 58s autopkgtest [15:43:33]: test run-unit-test: preparing testbed 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s Solving dependencies... 58s Some packages could not be installed. This may mean that you have 58s requested an impossible situation or if you are using the unstable 58s distribution that some required packages have not yet been created 58s or been moved out of Incoming. 58s The following information may help to resolve the situation: 58s 58s The following packages have unmet dependencies: 58s satisfy:command-line : Depends: python3-all but it is not going to be installed 58s Depends: python3-awkward but it is not going to be installed 58s Depends: python3-boltons but it is not going to be installed 58s Depends: python3-dask but it is not going to be installed 58s Depends: python3-distributed but it is not going to be installed 58s Depends: python3-filelock but it is not going to be installed 58s Depends: python3-h5py but it is not going to be installed 58s Depends: python3-joblib but it is not going to be installed 58s Depends: python3-matplotlib but it is not going to be installed 58s Depends: python3-numba but it is not installable 58s Depends: python3-openpyxl but it is not going to be installed 58s Depends: python3-pytest but it is not going to be installed 58s Depends: python3-pytest-cov but it is not going to be installed 58s Depends: python3-pytest-mock but it is not going to be installed 58s Depends: python3-pytest-xdist but it is not going to be installed 58s Depends: python3-sklearn but it is not going to be installed 58s Depends: python3-xarray but it is not going to be installed 58s Depends: python3-xlrd but it is not going to be installed 58s Depends: python3-zarr but it is not going to be installed 58s Depends: quilt but it is not going to be installed 58s Depends: python3-anndata but it is not going to be installed 58s E: Unable to satisfy dependencies. Reached two conflicting decisions: 58s 1. satisfy:command-line:s390x=1 is selected for install 58s 2. satisfy:command-line:s390x Depends python3-numba 58s but none of the choices are installable: 58s [no choices] 58s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed 58s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Solving dependencies... 59s Some packages could not be installed. This may mean that you have 59s requested an impossible situation or if you are using the unstable 59s distribution that some required packages have not yet been created 59s or been moved out of Incoming. 59s The following information may help to resolve the situation: 59s 59s The following packages have unmet dependencies: 59s satisfy:command-line : Depends: python3-all but it is not going to be installed 59s Depends: python3-awkward but it is not going to be installed 59s Depends: python3-boltons but it is not going to be installed 59s Depends: python3-dask but it is not going to be installed 59s Depends: python3-distributed but it is not going to be installed 59s Depends: python3-filelock but it is not going to be installed 59s Depends: python3-h5py but it is not going to be installed 59s Depends: python3-joblib but it is not going to be installed 59s Depends: python3-matplotlib but it is not going to be installed 59s Depends: python3-numba but it is not installable 59s Depends: python3-openpyxl but it is not going to be installed 59s Depends: python3-pytest but it is not going to be installed 59s Depends: python3-pytest-cov but it is not going to be installed 59s Depends: python3-pytest-mock but it is not going to be installed 59s Depends: python3-pytest-xdist but it is not going to be installed 59s Depends: python3-sklearn but it is not going to be installed 59s Depends: python3-xarray but it is not going to be installed 59s Depends: python3-xlrd but it is not going to be installed 59s Depends: python3-zarr but it is not going to be installed 59s Depends: quilt but it is not going to be installed 59s Depends: python3-anndata but it is not going to be installed 59s E: Unable to satisfy dependencies. Reached two conflicting decisions: 59s 1. satisfy:command-line:s390x=1 is selected for install 59s 2. satisfy:command-line:s390x Depends python3-numba 59s but none of the choices are installable: 59s [no choices] 59s run-unit-test FAIL badpkg 59s blame: python-anndata 59s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 59s autopkgtest [15:43:34]: @@@@@@@@@@@@@@@@@@@@ summary 59s run-unit-test FAIL badpkg 59s blame: python-anndata 59s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.