0s autopkgtest [05:50:07]: starting date and time: 2025-05-02 05:50:07+0000 0s autopkgtest [05:50:07]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [05:50:07]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.chcftemv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pyopengl --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pyopengl/3.1.9+dfsg-1.1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-16.secgroup --name adt-questing-s390x-pymol-20250502-055007-juju-7f2275-prod-proposed-migration-environment-20-121731d4-feb1-4eef-860f-1089d2f63caa --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 87s autopkgtest [05:51:34]: testbed dpkg architecture: s390x 87s autopkgtest [05:51:34]: testbed apt version: 3.0.0 87s autopkgtest [05:51:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 87s autopkgtest [05:51:34]: testbed release detected to be: None 88s autopkgtest [05:51:35]: updating testbed package index (apt update) 88s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 89s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 89s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 89s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 89s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2202 kB] 89s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [57.4 kB] 89s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [184 kB] 89s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [216 kB] 89s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1083 kB] 89s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [15.9 kB] 90s Fetched 3868 kB in 1s (2881 kB/s) 90s Reading package lists... 91s autopkgtest [05:51:38]: upgrading testbed (apt dist-upgrade and autopurge) 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 91s Starting 2 pkgProblemResolver with broken count: 0 91s Done 91s Entering ResolveByKeep 92s 92s Calculating upgrade... 92s The following packages will be upgraded: 92s dpkg dpkg-dev libdpkg-perl 92s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 2667 kB of archives. 92s After this operation, 1024 B of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x dpkg s390x 1.22.18ubuntu3 [1297 kB] 92s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x dpkg-dev all 1.22.18ubuntu3 [1089 kB] 92s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x libdpkg-perl all 1.22.18ubuntu3 [281 kB] 93s Fetched 2667 kB in 1s (3385 kB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 93s Preparing to unpack .../dpkg_1.22.18ubuntu3_s390x.deb ... 93s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 93s Setting up dpkg (1.22.18ubuntu3) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 93s Preparing to unpack .../dpkg-dev_1.22.18ubuntu3_all.deb ... 93s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 93s Preparing to unpack .../libdpkg-perl_1.22.18ubuntu3_all.deb ... 93s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 93s Setting up libdpkg-perl (1.22.18ubuntu3) ... 93s Setting up dpkg-dev (1.22.18ubuntu3) ... 93s Processing triggers for man-db (2.13.0-1) ... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Starting pkgProblemResolver with broken count: 0 95s Starting 2 pkgProblemResolver with broken count: 0 95s Done 95s Solving dependencies... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s autopkgtest [05:51:43]: rebooting testbed after setup commands that affected boot 116s autopkgtest [05:52:03]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr 6 13:39:00 UTC 2025 119s autopkgtest [05:52:06]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 123s Get:1 http://ftpmaster.internal/ubuntu questing/universe pymol 3.1.0+dfsg-1 (dsc) [2307 B] 123s Get:2 http://ftpmaster.internal/ubuntu questing/universe pymol 3.1.0+dfsg-1 (tar) [22.0 MB] 123s Get:3 http://ftpmaster.internal/ubuntu questing/universe pymol 3.1.0+dfsg-1 (diff) [57.9 kB] 123s gpgv: Signature made Mon Mar 17 08:37:43 2025 UTC 123s gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 123s gpgv: Can't check signature: No public key 123s dpkg-source: warning: cannot verify inline signature for ./pymol_3.1.0+dfsg-1.dsc: no acceptable signature found 125s autopkgtest [05:52:12]: testing package pymol version 3.1.0+dfsg-1 125s autopkgtest [05:52:12]: build not needed 129s autopkgtest [05:52:16]: test command1: preparing testbed 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 129s The following NEW packages will be installed: 129s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 129s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 129s libdouble-conversion3 libegl-mesa0 libegl1 libfontconfig1 libfreetype6 129s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglew2.2 libglu1-mesa 129s libglut3.12 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 129s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libice6 libinput-bin libinput10 129s libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 libmtdev1t64 libnetcdf22 129s libopengl0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 129s libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 129s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 129s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 129s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 129s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 129s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 129s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 129s libxi6 libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 129s mesa-libgallium pymol pymol-data python3-legacy-cgi python3-numpy 129s python3-numpy-dev python3-opengl python3-pymol python3-pyqt5 129s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 130s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. 130s Need to get 48.0 MB of archives. 130s After this operation, 185 MB of additional disk space will be used. 130s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x python3-numpy-dev s390x 1:2.2.3+ds-5 [147 kB] 130s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 130s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB] 130s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 130s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x python3-numpy s390x 1:2.2.3+ds-5 [4396 kB] 130s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 130s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 131s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 131s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 131s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 131s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig s390x 2.15.0-2.2ubuntu1 [191 kB] 131s Get:12 http://ftpmaster.internal/ubuntu questing/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 131s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x libavahi-common-data s390x 0.8-16ubuntu2 [31.0 kB] 131s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x libavahi-common3 s390x 0.8-16ubuntu2 [23.5 kB] 131s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x libavahi-client3 s390x 0.8-16ubuntu2 [26.3 kB] 131s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libcups2t64 s390x 2.4.12-0ubuntu1 [282 kB] 131s Get:17 http://ftpmaster.internal/ubuntu questing/universe s390x libdouble-conversion3 s390x 3.3.1-1 [43.3 kB] 131s Get:18 http://ftpmaster.internal/ubuntu questing/main s390x libwayland-server0 s390x 1.23.1-3 [37.3 kB] 131s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 131s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 131s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 131s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 131s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 131s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 131s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 131s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x mesa-libgallium s390x 25.0.3-1ubuntu2 [8057 kB] 131s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libgbm1 s390x 25.0.3-1ubuntu2 [34.5 kB] 131s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libwayland-client0 s390x 1.23.1-3 [28.2 kB] 131s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 131s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libegl-mesa0 s390x 25.0.3-1ubuntu2 [127 kB] 131s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 131s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libgl1-mesa-dri s390x 25.0.3-1ubuntu2 [35.5 kB] 131s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 131s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 131s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 131s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libglx-mesa0 s390x 25.0.3-1ubuntu2 [161 kB] 131s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 131s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 131s Get:39 http://ftpmaster.internal/ubuntu questing/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 131s Get:40 http://ftpmaster.internal/ubuntu questing/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB] 131s Get:41 http://ftpmaster.internal/ubuntu questing/universe s390x libglut3.12 s390x 3.4.0-4 [99.3 kB] 131s Get:42 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB] 131s Get:43 http://ftpmaster.internal/ubuntu questing/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 131s Get:44 http://ftpmaster.internal/ubuntu questing/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 131s Get:45 http://ftpmaster.internal/ubuntu questing/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 131s Get:46 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 131s Get:47 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 131s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 131s Get:49 http://ftpmaster.internal/ubuntu questing/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 131s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x libwacom-common all 2.14.0-1 [103 kB] 131s Get:51 http://ftpmaster.internal/ubuntu questing/main s390x libwacom9 s390x 2.14.0-1 [27.1 kB] 131s Get:52 http://ftpmaster.internal/ubuntu questing/main s390x libinput-bin s390x 1.27.1-1 [23.3 kB] 131s Get:53 http://ftpmaster.internal/ubuntu questing/main s390x libmtdev1t64 s390x 1.1.7-1 [15.6 kB] 131s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libinput10 s390x 1.27.1-1 [139 kB] 131s Get:55 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 131s Get:56 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 131s Get:57 http://ftpmaster.internal/ubuntu questing/universe s390x libmd4c0 s390x 0.5.2-2 [47.7 kB] 131s Get:58 http://ftpmaster.internal/ubuntu questing/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 131s Get:59 http://ftpmaster.internal/ubuntu questing/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 132s Get:60 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5core5t64 s390x 5.15.15+dfsg-4ubuntu1 [2242 kB] 132s Get:61 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5dbus5t64 s390x 5.15.15+dfsg-4ubuntu1 [240 kB] 132s Get:62 http://ftpmaster.internal/ubuntu questing/main s390x libegl1 s390x 1.7.0-1build1 [31.8 kB] 132s Get:63 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5network5t64 s390x 5.15.15+dfsg-4ubuntu1 [788 kB] 132s Get:64 http://ftpmaster.internal/ubuntu questing/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 132s Get:65 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-icccm4 s390x 0.4.2-1 [11.4 kB] 132s Get:66 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-util1 s390x 0.4.1-1 [10.7 kB] 132s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-image0 s390x 0.4.0-2build1 [12.0 kB] 132s Get:68 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-keysyms1 s390x 0.4.1-1 [8908 B] 132s Get:69 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 132s Get:70 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render-util0 s390x 0.3.10-1 [10.3 kB] 132s Get:71 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shape0 s390x 1.17.0-2 [6202 B] 132s Get:72 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-xinerama0 s390x 1.17.0-2 [5430 B] 132s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-xinput0 s390x 1.17.0-2 [35.8 kB] 132s Get:74 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-xkb1 s390x 1.17.0-2 [34.5 kB] 132s Get:75 http://ftpmaster.internal/ubuntu questing/main s390x libxkbcommon-x11-0 s390x 1.7.0-2 [14.8 kB] 132s Get:76 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 132s Get:77 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5gui5t64 s390x 5.15.15+dfsg-4ubuntu1 [4187 kB] 132s Get:78 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5widgets5t64 s390x 5.15.15+dfsg-4ubuntu1 [2718 kB] 132s Get:79 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5xml5t64 s390x 5.15.15+dfsg-4ubuntu1 [129 kB] 132s Get:80 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5designer5 s390x 5.15.15-6build1 [2900 kB] 132s Get:81 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5sql5t64 s390x 5.15.15+dfsg-4ubuntu1 [130 kB] 132s Get:82 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5help5 s390x 5.15.15-6build1 [172 kB] 132s Get:83 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5opengl5t64 s390x 5.15.15+dfsg-4ubuntu1 [156 kB] 132s Get:84 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5printsupport5t64 s390x 5.15.15+dfsg-4ubuntu1 [218 kB] 132s Get:85 http://ftpmaster.internal/ubuntu questing/universe s390x libqt5test5t64 s390x 5.15.15+dfsg-4ubuntu1 [156 kB] 132s Get:86 http://ftpmaster.internal/ubuntu questing/main s390x python3-legacy-cgi all 2.6.2-1 [16.6 kB] 132s Get:87 http://ftpmaster.internal/ubuntu questing/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 132s Get:88 http://ftpmaster.internal/ubuntu questing/main s390x libglu1-mesa s390x 9.0.2-1.1build1 [176 kB] 132s Get:89 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x python3-opengl all 3.1.9+dfsg-1.1 [631 kB] 132s Get:90 http://ftpmaster.internal/ubuntu questing/universe s390x python3-pyqt5.sip s390x 12.17.0-1build1 [66.5 kB] 132s Get:91 http://ftpmaster.internal/ubuntu questing/universe s390x python3-pyqt5 s390x 5.15.11+dfsg-2 [2880 kB] 132s Get:92 http://ftpmaster.internal/ubuntu questing/universe s390x python3-pyqt5.qtopengl s390x 5.15.11+dfsg-2 [140 kB] 132s Get:93 http://ftpmaster.internal/ubuntu questing/universe s390x pymol-data all 3.1.0+dfsg-1 [1394 kB] 132s Get:94 http://ftpmaster.internal/ubuntu questing/universe s390x python3-pymol s390x 3.1.0+dfsg-1 [4292 kB] 132s Get:95 http://ftpmaster.internal/ubuntu questing/universe s390x pymol all 3.1.0+dfsg-1 [126 kB] 133s Fetched 48.0 MB in 3s (16.2 MB/s) 133s Selecting previously unselected package python3-numpy-dev:s390x. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 133s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_s390x.deb ... 133s Unpacking python3-numpy-dev:s390x (1:2.2.3+ds-5) ... 133s Selecting previously unselected package libblas3:s390x. 133s Preparing to unpack .../01-libblas3_3.12.1-2_s390x.deb ... 133s Unpacking libblas3:s390x (3.12.1-2) ... 133s Selecting previously unselected package libgfortran5:s390x. 133s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_s390x.deb ... 133s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ... 133s Selecting previously unselected package liblapack3:s390x. 133s Preparing to unpack .../03-liblapack3_3.12.1-2_s390x.deb ... 133s Unpacking liblapack3:s390x (3.12.1-2) ... 133s Selecting previously unselected package python3-numpy. 133s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_s390x.deb ... 133s Unpacking python3-numpy (1:2.2.3+ds-5) ... 133s Selecting previously unselected package libfreetype6:s390x. 133s Preparing to unpack .../05-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 133s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 133s Selecting previously unselected package fonts-dejavu-mono. 133s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 133s Unpacking fonts-dejavu-mono (2.37-8) ... 133s Selecting previously unselected package fonts-dejavu-core. 133s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 133s Unpacking fonts-dejavu-core (2.37-8) ... 133s Selecting previously unselected package fontconfig-config. 133s Preparing to unpack .../08-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 133s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 133s Selecting previously unselected package libfontconfig1:s390x. 133s Preparing to unpack .../09-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 133s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 133s Selecting previously unselected package fontconfig. 133s Preparing to unpack .../10-fontconfig_2.15.0-2.2ubuntu1_s390x.deb ... 133s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 133s Selecting previously unselected package libaec0:s390x. 133s Preparing to unpack .../11-libaec0_1.1.3-1_s390x.deb ... 133s Unpacking libaec0:s390x (1.1.3-1) ... 133s Selecting previously unselected package libavahi-common-data:s390x. 133s Preparing to unpack .../12-libavahi-common-data_0.8-16ubuntu2_s390x.deb ... 133s Unpacking libavahi-common-data:s390x (0.8-16ubuntu2) ... 133s Selecting previously unselected package libavahi-common3:s390x. 133s Preparing to unpack .../13-libavahi-common3_0.8-16ubuntu2_s390x.deb ... 133s Unpacking libavahi-common3:s390x (0.8-16ubuntu2) ... 133s Selecting previously unselected package libavahi-client3:s390x. 133s Preparing to unpack .../14-libavahi-client3_0.8-16ubuntu2_s390x.deb ... 133s Unpacking libavahi-client3:s390x (0.8-16ubuntu2) ... 133s Selecting previously unselected package libcups2t64:s390x. 133s Preparing to unpack .../15-libcups2t64_2.4.12-0ubuntu1_s390x.deb ... 133s Unpacking libcups2t64:s390x (2.4.12-0ubuntu1) ... 133s Selecting previously unselected package libdouble-conversion3:s390x. 133s Preparing to unpack .../16-libdouble-conversion3_3.3.1-1_s390x.deb ... 133s Unpacking libdouble-conversion3:s390x (3.3.1-1) ... 133s Selecting previously unselected package libwayland-server0:s390x. 133s Preparing to unpack .../17-libwayland-server0_1.23.1-3_s390x.deb ... 133s Unpacking libwayland-server0:s390x (1.23.1-3) ... 133s Selecting previously unselected package libx11-xcb1:s390x. 133s Preparing to unpack .../18-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 133s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 133s Selecting previously unselected package libxcb-dri3-0:s390x. 133s Preparing to unpack .../19-libxcb-dri3-0_1.17.0-2_s390x.deb ... 133s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 133s Selecting previously unselected package libxcb-present0:s390x. 133s Preparing to unpack .../20-libxcb-present0_1.17.0-2_s390x.deb ... 133s Unpacking libxcb-present0:s390x (1.17.0-2) ... 133s Selecting previously unselected package libxcb-randr0:s390x. 133s Preparing to unpack .../21-libxcb-randr0_1.17.0-2_s390x.deb ... 133s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 133s Selecting previously unselected package libxcb-sync1:s390x. 133s Preparing to unpack .../22-libxcb-sync1_1.17.0-2_s390x.deb ... 133s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 133s Selecting previously unselected package libxcb-xfixes0:s390x. 133s Preparing to unpack .../23-libxcb-xfixes0_1.17.0-2_s390x.deb ... 133s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 133s Selecting previously unselected package libxshmfence1:s390x. 133s Preparing to unpack .../24-libxshmfence1_1.3-1build5_s390x.deb ... 133s Unpacking libxshmfence1:s390x (1.3-1build5) ... 133s Selecting previously unselected package mesa-libgallium:s390x. 133s Preparing to unpack .../25-mesa-libgallium_25.0.3-1ubuntu2_s390x.deb ... 133s Unpacking mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 134s Selecting previously unselected package libgbm1:s390x. 134s Preparing to unpack .../26-libgbm1_25.0.3-1ubuntu2_s390x.deb ... 134s Unpacking libgbm1:s390x (25.0.3-1ubuntu2) ... 134s Selecting previously unselected package libwayland-client0:s390x. 134s Preparing to unpack .../27-libwayland-client0_1.23.1-3_s390x.deb ... 134s Unpacking libwayland-client0:s390x (1.23.1-3) ... 134s Selecting previously unselected package libxcb-shm0:s390x. 134s Preparing to unpack .../28-libxcb-shm0_1.17.0-2_s390x.deb ... 134s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 134s Selecting previously unselected package libegl-mesa0:s390x. 134s Preparing to unpack .../29-libegl-mesa0_25.0.3-1ubuntu2_s390x.deb ... 134s Unpacking libegl-mesa0:s390x (25.0.3-1ubuntu2) ... 134s Selecting previously unselected package libvulkan1:s390x. 134s Preparing to unpack .../30-libvulkan1_1.4.304.0-1_s390x.deb ... 134s Unpacking libvulkan1:s390x (1.4.304.0-1) ... 134s Selecting previously unselected package libgl1-mesa-dri:s390x. 134s Preparing to unpack .../31-libgl1-mesa-dri_25.0.3-1ubuntu2_s390x.deb ... 134s Unpacking libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 134s Selecting previously unselected package libglvnd0:s390x. 134s Preparing to unpack .../32-libglvnd0_1.7.0-1build1_s390x.deb ... 134s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 134s Selecting previously unselected package libxcb-glx0:s390x. 134s Preparing to unpack .../33-libxcb-glx0_1.17.0-2_s390x.deb ... 134s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 134s Selecting previously unselected package libxxf86vm1:s390x. 134s Preparing to unpack .../34-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 134s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 134s Selecting previously unselected package libglx-mesa0:s390x. 134s Preparing to unpack .../35-libglx-mesa0_25.0.3-1ubuntu2_s390x.deb ... 134s Unpacking libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 134s Selecting previously unselected package libglx0:s390x. 134s Preparing to unpack .../36-libglx0_1.7.0-1build1_s390x.deb ... 134s Unpacking libglx0:s390x (1.7.0-1build1) ... 134s Selecting previously unselected package libgl1:s390x. 134s Preparing to unpack .../37-libgl1_1.7.0-1build1_s390x.deb ... 134s Unpacking libgl1:s390x (1.7.0-1build1) ... 134s Selecting previously unselected package libglew2.2:s390x. 134s Preparing to unpack .../38-libglew2.2_2.2.0-4build1_s390x.deb ... 134s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 134s Selecting previously unselected package libxi6:s390x. 134s Preparing to unpack .../39-libxi6_2%3a1.8.2-1_s390x.deb ... 134s Unpacking libxi6:s390x (2:1.8.2-1) ... 134s Selecting previously unselected package libglut3.12:s390x. 134s Preparing to unpack .../40-libglut3.12_3.4.0-4_s390x.deb ... 134s Unpacking libglut3.12:s390x (3.4.0-4) ... 134s Selecting previously unselected package libgomp1:s390x. 134s Preparing to unpack .../41-libgomp1_15-20250404-0ubuntu1_s390x.deb ... 134s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ... 134s Selecting previously unselected package libgraphite2-3:s390x. 134s Preparing to unpack .../42-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 134s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 134s Selecting previously unselected package libharfbuzz0b:s390x. 134s Preparing to unpack .../43-libharfbuzz0b_10.2.0-1_s390x.deb ... 134s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 134s Selecting previously unselected package libsz2:s390x. 134s Preparing to unpack .../44-libsz2_1.1.3-1_s390x.deb ... 134s Unpacking libsz2:s390x (1.1.3-1) ... 134s Selecting previously unselected package libhdf5-310:s390x. 134s Preparing to unpack .../45-libhdf5-310_1.14.5+repack-3_s390x.deb ... 134s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 134s Selecting previously unselected package libhdf5-hl-310:s390x. 134s Preparing to unpack .../46-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 134s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 134s Selecting previously unselected package x11-common. 134s Preparing to unpack .../47-x11-common_1%3a7.7+23ubuntu4_all.deb ... 134s Unpacking x11-common (1:7.7+23ubuntu4) ... 134s Selecting previously unselected package libice6:s390x. 134s Preparing to unpack .../48-libice6_2%3a1.1.1-1_s390x.deb ... 134s Unpacking libice6:s390x (2:1.1.1-1) ... 134s Selecting previously unselected package libwacom-common. 134s Preparing to unpack .../49-libwacom-common_2.14.0-1_all.deb ... 134s Unpacking libwacom-common (2.14.0-1) ... 134s Selecting previously unselected package libwacom9:s390x. 134s Preparing to unpack .../50-libwacom9_2.14.0-1_s390x.deb ... 134s Unpacking libwacom9:s390x (2.14.0-1) ... 134s Selecting previously unselected package libinput-bin. 134s Preparing to unpack .../51-libinput-bin_1.27.1-1_s390x.deb ... 134s Unpacking libinput-bin (1.27.1-1) ... 134s Selecting previously unselected package libmtdev1t64:s390x. 134s Preparing to unpack .../52-libmtdev1t64_1.1.7-1_s390x.deb ... 134s Unpacking libmtdev1t64:s390x (1.1.7-1) ... 134s Selecting previously unselected package libinput10:s390x. 134s Preparing to unpack .../53-libinput10_1.27.1-1_s390x.deb ... 134s Unpacking libinput10:s390x (1.27.1-1) ... 134s Selecting previously unselected package libjpeg-turbo8:s390x. 134s Preparing to unpack .../54-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 134s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 134s Selecting previously unselected package libjpeg8:s390x. 134s Preparing to unpack .../55-libjpeg8_8c-2ubuntu11_s390x.deb ... 134s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 134s Selecting previously unselected package libmd4c0:s390x. 134s Preparing to unpack .../56-libmd4c0_0.5.2-2_s390x.deb ... 134s Unpacking libmd4c0:s390x (0.5.2-2) ... 134s Selecting previously unselected package libnetcdf22:s390x. 134s Preparing to unpack .../57-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 134s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 134s Selecting previously unselected package libpcre2-16-0:s390x. 134s Preparing to unpack .../58-libpcre2-16-0_10.45-1_s390x.deb ... 134s Unpacking libpcre2-16-0:s390x (10.45-1) ... 134s Selecting previously unselected package libqt5core5t64:s390x. 134s Preparing to unpack .../59-libqt5core5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 134s Unpacking libqt5core5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 134s Selecting previously unselected package libqt5dbus5t64:s390x. 134s Preparing to unpack .../60-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 134s Unpacking libqt5dbus5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 134s Selecting previously unselected package libegl1:s390x. 134s Preparing to unpack .../61-libegl1_1.7.0-1build1_s390x.deb ... 134s Unpacking libegl1:s390x (1.7.0-1build1) ... 134s Selecting previously unselected package libqt5network5t64:s390x. 134s Preparing to unpack .../62-libqt5network5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 134s Unpacking libqt5network5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 134s Selecting previously unselected package libsm6:s390x. 134s Preparing to unpack .../63-libsm6_2%3a1.2.4-1_s390x.deb ... 134s Unpacking libsm6:s390x (2:1.2.4-1) ... 134s Selecting previously unselected package libxcb-icccm4:s390x. 134s Preparing to unpack .../64-libxcb-icccm4_0.4.2-1_s390x.deb ... 134s Unpacking libxcb-icccm4:s390x (0.4.2-1) ... 134s Selecting previously unselected package libxcb-util1:s390x. 134s Preparing to unpack .../65-libxcb-util1_0.4.1-1_s390x.deb ... 134s Unpacking libxcb-util1:s390x (0.4.1-1) ... 134s Selecting previously unselected package libxcb-image0:s390x. 134s Preparing to unpack .../66-libxcb-image0_0.4.0-2build1_s390x.deb ... 134s Unpacking libxcb-image0:s390x (0.4.0-2build1) ... 134s Selecting previously unselected package libxcb-keysyms1:s390x. 134s Preparing to unpack .../67-libxcb-keysyms1_0.4.1-1_s390x.deb ... 134s Unpacking libxcb-keysyms1:s390x (0.4.1-1) ... 134s Selecting previously unselected package libxcb-render0:s390x. 134s Preparing to unpack .../68-libxcb-render0_1.17.0-2_s390x.deb ... 134s Unpacking libxcb-render0:s390x (1.17.0-2) ... 134s Selecting previously unselected package libxcb-render-util0:s390x. 134s Preparing to unpack .../69-libxcb-render-util0_0.3.10-1_s390x.deb ... 134s Unpacking libxcb-render-util0:s390x (0.3.10-1) ... 134s Selecting previously unselected package libxcb-shape0:s390x. 134s Preparing to unpack .../70-libxcb-shape0_1.17.0-2_s390x.deb ... 134s Unpacking libxcb-shape0:s390x (1.17.0-2) ... 134s Selecting previously unselected package libxcb-xinerama0:s390x. 134s Preparing to unpack .../71-libxcb-xinerama0_1.17.0-2_s390x.deb ... 134s Unpacking libxcb-xinerama0:s390x (1.17.0-2) ... 134s Selecting previously unselected package libxcb-xinput0:s390x. 134s Preparing to unpack .../72-libxcb-xinput0_1.17.0-2_s390x.deb ... 134s Unpacking libxcb-xinput0:s390x (1.17.0-2) ... 134s Selecting previously unselected package libxcb-xkb1:s390x. 134s Preparing to unpack .../73-libxcb-xkb1_1.17.0-2_s390x.deb ... 134s Unpacking libxcb-xkb1:s390x (1.17.0-2) ... 134s Selecting previously unselected package libxkbcommon-x11-0:s390x. 134s Preparing to unpack .../74-libxkbcommon-x11-0_1.7.0-2_s390x.deb ... 134s Unpacking libxkbcommon-x11-0:s390x (1.7.0-2) ... 134s Selecting previously unselected package libxrender1:s390x. 134s Preparing to unpack .../75-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 134s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 134s Selecting previously unselected package libqt5gui5t64:s390x. 134s Preparing to unpack .../76-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 134s Unpacking libqt5gui5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 134s Selecting previously unselected package libqt5widgets5t64:s390x. 134s Preparing to unpack .../77-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 134s Unpacking libqt5widgets5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 134s Selecting previously unselected package libqt5xml5t64:s390x. 134s Preparing to unpack .../78-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 134s Unpacking libqt5xml5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 134s Selecting previously unselected package libqt5designer5:s390x. 134s Preparing to unpack .../79-libqt5designer5_5.15.15-6build1_s390x.deb ... 134s Unpacking libqt5designer5:s390x (5.15.15-6build1) ... 135s Selecting previously unselected package libqt5sql5t64:s390x. 135s Preparing to unpack .../80-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 135s Unpacking libqt5sql5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 135s Selecting previously unselected package libqt5help5:s390x. 135s Preparing to unpack .../81-libqt5help5_5.15.15-6build1_s390x.deb ... 135s Unpacking libqt5help5:s390x (5.15.15-6build1) ... 135s Selecting previously unselected package libqt5opengl5t64:s390x. 135s Preparing to unpack .../82-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 135s Unpacking libqt5opengl5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 135s Selecting previously unselected package libqt5printsupport5t64:s390x. 135s Preparing to unpack .../83-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 135s Unpacking libqt5printsupport5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 135s Selecting previously unselected package libqt5test5t64:s390x. 135s Preparing to unpack .../84-libqt5test5t64_5.15.15+dfsg-4ubuntu1_s390x.deb ... 135s Unpacking libqt5test5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 135s Selecting previously unselected package python3-legacy-cgi. 135s Preparing to unpack .../85-python3-legacy-cgi_2.6.2-1_all.deb ... 135s Unpacking python3-legacy-cgi (2.6.2-1) ... 135s Selecting previously unselected package libopengl0:s390x. 135s Preparing to unpack .../86-libopengl0_1.7.0-1build1_s390x.deb ... 135s Unpacking libopengl0:s390x (1.7.0-1build1) ... 135s Selecting previously unselected package libglu1-mesa:s390x. 135s Preparing to unpack .../87-libglu1-mesa_9.0.2-1.1build1_s390x.deb ... 135s Unpacking libglu1-mesa:s390x (9.0.2-1.1build1) ... 135s Selecting previously unselected package python3-opengl. 135s Preparing to unpack .../88-python3-opengl_3.1.9+dfsg-1.1_all.deb ... 135s Unpacking python3-opengl (3.1.9+dfsg-1.1) ... 135s Selecting previously unselected package python3-pyqt5.sip. 135s Preparing to unpack .../89-python3-pyqt5.sip_12.17.0-1build1_s390x.deb ... 135s Unpacking python3-pyqt5.sip (12.17.0-1build1) ... 135s Selecting previously unselected package python3-pyqt5. 135s Preparing to unpack .../90-python3-pyqt5_5.15.11+dfsg-2_s390x.deb ... 135s Unpacking python3-pyqt5 (5.15.11+dfsg-2) ... 135s Selecting previously unselected package python3-pyqt5.qtopengl. 135s Preparing to unpack .../91-python3-pyqt5.qtopengl_5.15.11+dfsg-2_s390x.deb ... 135s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 135s Selecting previously unselected package pymol-data. 135s Preparing to unpack .../92-pymol-data_3.1.0+dfsg-1_all.deb ... 135s Unpacking pymol-data (3.1.0+dfsg-1) ... 135s Selecting previously unselected package python3-pymol. 135s Preparing to unpack .../93-python3-pymol_3.1.0+dfsg-1_s390x.deb ... 135s Unpacking python3-pymol (3.1.0+dfsg-1) ... 135s Selecting previously unselected package pymol. 135s Preparing to unpack .../94-pymol_3.1.0+dfsg-1_all.deb ... 135s Unpacking pymol (3.1.0+dfsg-1) ... 135s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 135s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 135s Setting up libwayland-server0:s390x (1.23.1-3) ... 135s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 135s Setting up libdouble-conversion3:s390x (3.3.1-1) ... 135s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 135s Setting up libxi6:s390x (2:1.8.2-1) ... 135s Setting up libxcb-xinput0:s390x (1.17.0-2) ... 135s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 135s Setting up libxcb-render0:s390x (1.17.0-2) ... 135s Setting up libglvnd0:s390x (1.7.0-1build1) ... 135s Setting up libxcb-glx0:s390x (1.17.0-2) ... 135s Setting up libxcb-keysyms1:s390x (0.4.1-1) ... 135s Setting up libxcb-shape0:s390x (1.17.0-2) ... 135s Setting up x11-common (1:7.7+23ubuntu4) ... 135s Setting up libxcb-render-util0:s390x (0.3.10-1) ... 135s Setting up libxcb-shm0:s390x (1.17.0-2) ... 135s Setting up libxcb-icccm4:s390x (0.4.2-1) ... 135s Setting up libgomp1:s390x (15-20250404-0ubuntu1) ... 135s Setting up libpcre2-16-0:s390x (10.45-1) ... 135s Setting up libaec0:s390x (1.1.3-1) ... 135s Setting up libopengl0:s390x (1.7.0-1build1) ... 135s Setting up libxcb-util1:s390x (0.4.1-1) ... 135s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 135s Setting up libxcb-xkb1:s390x (1.17.0-2) ... 135s Setting up libxcb-image0:s390x (0.4.0-2build1) ... 135s Setting up libxcb-present0:s390x (1.17.0-2) ... 135s Setting up libqt5core5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 135s Setting up libblas3:s390x (3.12.1-2) ... 135s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 135s Setting up libxcb-xinerama0:s390x (1.17.0-2) ... 135s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 135s Setting up libxcb-sync1:s390x (1.17.0-2) ... 135s Setting up libavahi-common-data:s390x (0.8-16ubuntu2) ... 135s Setting up pymol-data (3.1.0+dfsg-1) ... 135s Setting up libxkbcommon-x11-0:s390x (1.7.0-2) ... 135s Setting up fonts-dejavu-mono (2.37-8) ... 135s Setting up python3-numpy-dev:s390x (1:2.2.3+ds-5) ... 135s Setting up fonts-dejavu-core (2.37-8) ... 135s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 135s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ... 135s Setting up libvulkan1:s390x (1.4.304.0-1) ... 135s Setting up python3-legacy-cgi (2.6.2-1) ... 135s Setting up python3-pyqt5.sip (12.17.0-1build1) ... 135s Setting up libmtdev1t64:s390x (1.1.7-1) ... 135s Setting up libxshmfence1:s390x (1.3-1build5) ... 135s Setting up libxcb-randr0:s390x (1.17.0-2) ... 135s Setting up libqt5sql5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 135s Setting up libmd4c0:s390x (0.5.2-2) ... 135s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 135s Setting up libglu1-mesa:s390x (9.0.2-1.1build1) ... 135s Setting up libsz2:s390x (1.1.3-1) ... 135s Setting up libwacom-common (2.14.0-1) ... 135s Setting up libwayland-client0:s390x (1.23.1-3) ... 135s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 135s Setting up libice6:s390x (2:1.1.1-1) ... 135s Setting up mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 135s Setting up liblapack3:s390x (3.12.1-2) ... 135s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 135s Setting up libqt5dbus5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 135s Setting up libgbm1:s390x (25.0.3-1ubuntu2) ... 135s Setting up libwacom9:s390x (2.14.0-1) ... 135s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 135s Setting up libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 136s Setting up libqt5network5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 136s Setting up libavahi-common3:s390x (0.8-16ubuntu2) ... 136s Setting up libqt5xml5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 136s Setting up libqt5test5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 136s Setting up libinput-bin (1.27.1-1) ... 136s Setting up libegl-mesa0:s390x (25.0.3-1ubuntu2) ... 136s Setting up python3-numpy (1:2.2.3+ds-5) ... 137s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 137s Setting up libegl1:s390x (1.7.0-1build1) ... 137s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 137s Setting up libsm6:s390x (2:1.2.4-1) ... 137s Setting up libavahi-client3:s390x (0.8-16ubuntu2) ... 137s Setting up libinput10:s390x (1.27.1-1) ... 137s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 137s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 139s Regenerating fonts cache... done. 139s Setting up libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 139s Setting up libglx0:s390x (1.7.0-1build1) ... 139s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 139s Setting up libgl1:s390x (1.7.0-1build1) ... 139s Setting up libglut3.12:s390x (3.4.0-4) ... 139s Setting up libglew2.2:s390x (2.2.0-4build1) ... 139s Setting up libcups2t64:s390x (2.4.12-0ubuntu1) ... 139s Setting up python3-opengl (3.1.9+dfsg-1.1) ... 139s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ ' 139s |\ |\ 140s Setting up libqt5gui5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 140s Setting up libqt5widgets5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 140s Setting up libqt5help5:s390x (5.15.15-6build1) ... 140s Setting up libqt5opengl5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 140s Setting up libqt5printsupport5t64:s390x (5.15.15+dfsg-4ubuntu1) ... 140s Setting up libqt5designer5:s390x (5.15.15-6build1) ... 140s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 140s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 140s Setting up python3-pymol (3.1.0+dfsg-1) ... 140s Setting up pymol (3.1.0+dfsg-1) ... 140s Processing triggers for libc-bin (2.41-6ubuntu1) ... 140s Processing triggers for man-db (2.13.0-1) ... 141s Processing triggers for udev (257.4-1ubuntu3) ... 142s autopkgtest [05:52:29]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 142s autopkgtest [05:52:29]: test command1: [----------------------- 142s Search pymol scripts in /tmp/autopkgtest.GmFvHt/build.rIg/src/examples... 142s Processing new directory /tmp/autopkgtest.GmFvHt/build.rIg/src/examples 142s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/chempy/generate_amber.py'... 143s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/chempy/generate_mmff.py'... 143s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/area_diff.pml'... 143s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/build_peptide.py'... 144s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/contact.pml 144s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/dali.py 144s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/density.pml 144s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/groel_es.pml 144s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/multiclip_ray.pml 144s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/packing.pml 144s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/packsurf.pml 144s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/ref_frame.pml 144s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/ribosome.pml 144s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/scenes2movie.pml 144s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/seq_match_sele.pml'... 147s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/ss_xfer.pml 147s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/symsph.py'... 147s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/brick01.py'... 147s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo01.py'... 147s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo02.py'... 151s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo03.py'... 154s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo04.py'... 154s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo05.py'... 154s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo06.py'... 156s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo07.py'... 157s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo08.py'... 157s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo_3Dtext01.py'... 157s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo_axes.py'... 157s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo_label_hack.py'... 160s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo_plane.py'... 160s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/chempy_model01.py'... 160s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/chempy_model02.py'... 160s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/chempy_model03.py'... 164s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/click_ordered_list.py'... 164s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/count_molecules.py'... 164s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/extend_demo01.py'... 164s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/gl01.py'... 164s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/gl02.py'... 165s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/gl03.py'... 168s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/importing.py 168s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/link_demo.py'... 168s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/membrane.py'... 168s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/mutate01.pml'... 168s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/mutate02.py'... 170s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/my_ext_gui.py'... 170s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/particle01.py'... 170s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/particle02.py'... 171s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/pick_wiz.py'... 171s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/povray01.py 171s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/scenes_to_movie01.pml'... 171s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/sd_annotate.pml 171s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/sele_wiz.py'... 171s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/start_pymol.py 171s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/syncmol.py'... 171s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/tkwindow.py 171s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/webgui01.py'... 171s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/webgui02.py'... 171s /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 171s mo = re.search("molid\=([A-Z0-9]+)",self.path) 171s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/xmlrpc01.py 171s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/xmlrpc02.py'... 171s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/launching/launch_demo.py'... 171s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/launching/launch_viewer1.py'... 172s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/launching/launch_viewer2.py'... 172s Processing new directory /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/chempy 172s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/chempy/generate_amber.py'... 172s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/chempy/generate_mmff.py'... 172s Processing new directory /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook 172s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/area_diff.pml'... 173s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/build_peptide.py'... 173s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/contact.pml 173s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/dali.py 173s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/density.pml 173s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/groel_es.pml 173s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/multiclip_ray.pml 173s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/packing.pml 173s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/packsurf.pml 173s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/ref_frame.pml 173s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/ribosome.pml 173s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/scenes2movie.pml 173s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/seq_match_sele.pml'... 174s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/ss_xfer.pml 174s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/cookbook/symsph.py'... 175s Processing new directory /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel 175s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/brick01.py'... 175s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo01.py'... 175s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo02.py'... 178s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo03.py'... 181s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo04.py'... 181s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo05.py'... 181s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo06.py'... 182s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo07.py'... 183s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo08.py'... 183s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo_3Dtext01.py'... 183s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo_axes.py'... 183s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo_label_hack.py'... 186s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/cgo_plane.py'... 186s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/chempy_model01.py'... 186s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/chempy_model02.py'... 186s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/chempy_model03.py'... 190s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/click_ordered_list.py'... 190s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/count_molecules.py'... 190s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/extend_demo01.py'... 190s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/gl01.py'... 190s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/gl02.py'... 191s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/gl03.py'... 194s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/importing.py 194s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/link_demo.py'... 194s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/membrane.py'... 194s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/mutate01.pml'... 195s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/mutate02.py'... 196s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/my_ext_gui.py'... 196s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/particle01.py'... 196s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/particle02.py'... 197s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/pick_wiz.py'... 197s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/povray01.py 197s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/scenes_to_movie01.pml'... 197s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/sd_annotate.pml 197s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/sele_wiz.py'... 197s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/start_pymol.py 197s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/syncmol.py'... 197s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/tkwindow.py 197s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/webgui01.py'... 197s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/webgui02.py'... 197s /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 197s mo = re.search("molid\=([A-Z0-9]+)",self.path) 197s Skip /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/xmlrpc01.py 197s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/devel/xmlrpc02.py'... 197s Processing new directory /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/launching 197s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/launching/launch_demo.py'... 198s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/launching/launch_viewer1.py'... 198s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/examples/launching/launch_viewer2.py'... 198s autopkgtest [05:53:25]: test command1: -----------------------] 199s autopkgtest [05:53:26]: test command1: - - - - - - - - - - results - - - - - - - - - - 199s command1 PASS (superficial) 199s autopkgtest [05:53:26]: test command2: preparing testbed 199s Reading package lists... 199s Building dependency tree... 199s Reading state information... 199s Starting pkgProblemResolver with broken count: 0 199s Starting 2 pkgProblemResolver with broken count: 0 199s Done 200s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 201s autopkgtest [05:53:28]: test command2: sh debian/tests/call-pymol-scripts data/demo 201s autopkgtest [05:53:28]: test command2: [----------------------- 201s Search pymol scripts in /tmp/autopkgtest.GmFvHt/build.rIg/src/data/demo... 201s Processing new directory /tmp/autopkgtest.GmFvHt/build.rIg/src/data/demo 201s Run 'pymol -c /tmp/autopkgtest.GmFvHt/build.rIg/src/data/demo/cgo03.py'... 204s autopkgtest [05:53:31]: test command2: -----------------------] 205s autopkgtest [05:53:32]: test command2: - - - - - - - - - - results - - - - - - - - - - 205s command2 PASS (superficial) 205s autopkgtest [05:53:32]: test command3: preparing testbed 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 206s Starting pkgProblemResolver with broken count: 0 206s Starting 2 pkgProblemResolver with broken count: 0 206s Done 206s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 206s autopkgtest [05:53:33]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 206s autopkgtest [05:53:33]: test command3: [----------------------- 207s Search pymol scripts in /usr/share/pymol/examples... 207s Processing new directory /usr/share/pymol/examples 207s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 207s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 207s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 207s Skip /usr/share/pymol/examples/cookbook/contact.pml 207s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 207s Skip /usr/share/pymol/examples/cookbook/packing.pml 207s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 207s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 207s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 207s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 207s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 207s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 210s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 215s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 215s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 215s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 215s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 215s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 219s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 219s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 219s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 219s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 223s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 223s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 223s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 226s Skip /usr/share/pymol/examples/devel/importing.py 226s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 226s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 227s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 227s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 228s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 228s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 229s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 229s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 230s Skip /usr/share/pymol/examples/devel/tkwindow.py 230s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 230s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 230s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 230s mo = re.search("molid\=([A-Z0-9]+)",self.path) 230s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 230s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 230s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 230s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 230s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 230s Processing new directory /usr/share/pymol/examples/chempy 230s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 230s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 230s Processing new directory /usr/share/pymol/examples/cookbook 230s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 230s Skip /usr/share/pymol/examples/cookbook/contact.pml 230s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 230s Skip /usr/share/pymol/examples/cookbook/packing.pml 230s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 230s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 230s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 230s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 230s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 231s Processing new directory /usr/share/pymol/examples/devel 231s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 231s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 231s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 234s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 237s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 237s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 237s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 238s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 242s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 242s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 242s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 242s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 246s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 246s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 246s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 246s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 246s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 246s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 250s Skip /usr/share/pymol/examples/devel/importing.py 250s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 250s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 251s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 252s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 252s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 252s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 253s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 253s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 253s Skip /usr/share/pymol/examples/devel/tkwindow.py 253s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 253s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 253s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 253s mo = re.search("molid\=([A-Z0-9]+)",self.path) 253s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 253s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 253s Processing new directory /usr/share/pymol/examples/launching 253s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 254s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 254s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 254s autopkgtest [05:54:21]: test command3: -----------------------] 255s autopkgtest [05:54:22]: test command3: - - - - - - - - - - results - - - - - - - - - - 255s command3 PASS (superficial) 255s autopkgtest [05:54:22]: test command4: preparing testbed 255s Reading package lists... 255s Building dependency tree... 255s Reading state information... 255s Starting pkgProblemResolver with broken count: 0 256s Starting 2 pkgProblemResolver with broken count: 0 256s Done 256s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 256s autopkgtest [05:54:23]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 256s autopkgtest [05:54:23]: test command4: [----------------------- 257s Search pymol scripts in /usr/share/pymol/examples/cookbook... 257s Processing new directory /usr/share/pymol/examples/cookbook 257s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 257s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 260s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 260s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 261s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 297s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 301s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 302s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 303s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 305s autopkgtest [05:55:12]: test command4: -----------------------] 306s autopkgtest [05:55:13]: test command4: - - - - - - - - - - results - - - - - - - - - - 306s command4 PASS (superficial) 306s autopkgtest [05:55:13]: test command5: preparing testbed 306s Reading package lists... 307s Building dependency tree... 307s Reading state information... 307s Starting pkgProblemResolver with broken count: 0 307s Starting 2 pkgProblemResolver with broken count: 0 307s Done 307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 308s autopkgtest [05:55:15]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 308s autopkgtest [05:55:15]: test command5: [----------------------- 308s PyMOL(TM) Molecular Graphics System, Version 3.1.0. 308s Copyright (c) Schrodinger, LLC. 308s All Rights Reserved. 308s 308s Created by Warren L. DeLano, Ph.D. 308s 308s PyMOL is user-supported open-source software. Although some versions 308s are freely available, PyMOL is not in the public domain. 308s 308s If PyMOL is helpful in your work or study, then please volunteer 308s support for our ongoing efforts to create open and affordable scientific 308s software by purchasing a PyMOL Maintenance and/or Support subscription. 308s 308s More information can be found at "http://www.pymol.org". 308s 308s Enter "help" for a list of commands. 308s Enter "help " for information on a specific command. 308s 308s Hit ESC anytime to toggle between text and graphics. 308s 308s Setting: wizard_prompt_mode set to 3. 308s Detected 2 CPU cores. Enabled multithreaded rendering. 308s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 308s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 308s PyMOL>wizard annotation 308s PyMOL>set wizard_prompt_mode,3 308s PyMOL>load_annotated_sdf demo.sdf 308s HBA ['[1, 25, 26, 34]\n'] 308s HBD ['[20]\n'] 308s ACD_NUMBER ['MFCD02681585\n'] 308s SCORE ['-222.044\n'] 308s MOLID ['MFCD02681585\n'] 308s HBA ['[1, 21]\n'] 308s HBD ['[]\n'] 308s ACD_NUMBER ['MFCD01567969\n'] 308s SCORE ['-219.984\n'] 308s MOLID ['MFCD01567969\n'] 308s HBA ['[1, 24]\n'] 308s HBD ['[10, 22]\n'] 308s ACD_NUMBER ['MFCD00023789\n'] 308s SCORE ['-219.911\n'] 308s MOLID ['MFCD00023789\n'] 308s HBA ['[1, 11]\n'] 308s HBD ['[3]\n'] 308s ACD_NUMBER ['MFCD02579443\n'] 308s SCORE ['-219.769\n'] 308s MOLID ['MFCD02579443\n'] 308s HBA ['[1, 11]\n'] 308s HBD ['[9]\n'] 308s ACD_NUMBER ['MFCD02579410\n'] 308s SCORE ['-214.809\n'] 308s MOLID ['MFCD02579410\n'] 308s HBA ['[1, 20, 22, 27, 32]\n'] 308s HBD ['[10, 20]\n'] 308s ACD_NUMBER ['MFCD02579135\n'] 308s SCORE ['-213.630\n'] 308s MOLID ['MFCD02579135\n'] 308s HBA ['[1, 11, 14, 21]\n'] 308s HBD ['[]\n'] 308s ACD_NUMBER ['MFCD02681468\n'] 308s SCORE ['-213.462\n'] 308s MOLID ['MFCD02681468\n'] 308s HBA ['[1, 13, 14, 29]\n'] 308s HBD ['[]\n'] 308s ACD_NUMBER ['MFCD00141070\n'] 308s SCORE ['-213.240\n'] 308s MOLID ['MFCD00141070\n'] 308s HBA ['[1, 8]\n'] 308s HBD ['[]\n'] 308s ACD_NUMBER ['MFCD02983625\n'] 308s SCORE ['-211.422\n'] 308s MOLID ['MFCD02983625\n'] 308s HBA ['[1, 11]\n'] 308s HBD ['[3, 12]\n'] 308s ACD_NUMBER ['MFCD00115818\n'] 308s SCORE ['-210.482\n'] 308s MOLID ['MFCD00115818\n'] 308s autopkgtest [05:55:15]: test command5: -----------------------] 309s command5 PASS (superficial) 309s autopkgtest [05:55:16]: test command5: - - - - - - - - - - results - - - - - - - - - - 309s autopkgtest [05:55:16]: @@@@@@@@@@@@@@@@@@@@ summary 309s command1 PASS (superficial) 309s command2 PASS (superficial) 309s command3 PASS (superficial) 309s command4 PASS (superficial) 309s command5 PASS (superficial) 326s nova [W] Using flock in prodstack6-s390x 326s Creating nova instance adt-questing-s390x-pymol-20250502-055007-juju-7f2275-prod-proposed-migration-environment-20-121731d4-feb1-4eef-860f-1089d2f63caa from image adt/ubuntu-questing-s390x-server-20250501.img (UUID 06a11845-48a4-4c28-9288-51dd7b757c52)... 326s nova [W] Timed out waiting for b5448653-1830-4c8f-bd40-e690151ab06b to get deleted.