0s autopkgtest [18:55:14]: starting date and time: 2025-05-02 18:55:14+0000 0s autopkgtest [18:55:14]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [18:55:14]: host juju-7f2275-prod-proposed-migration-environment-23; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jw5u1gjs/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:mpich --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mpich/4.3.0-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-23@bos03-s390x-15.secgroup --name adt-questing-s390x-lammps-20250502-182433-juju-7f2275-prod-proposed-migration-environment-23-e454d847-654b-418c-b28f-fed530560269 --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-23 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 86s autopkgtest [18:56:40]: testbed dpkg architecture: s390x 86s autopkgtest [18:56:40]: testbed apt version: 3.0.0 86s autopkgtest [18:56:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 86s autopkgtest [18:56:40]: testbed release detected to be: None 87s autopkgtest [18:56:41]: updating testbed package index (apt update) 87s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 87s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 88s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 88s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 88s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2005 kB] 88s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.1 kB] 88s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [170 kB] 88s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [208 kB] 88s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1295 kB] 88s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [8572 B] 88s Fetched 3841 kB in 1s (3150 kB/s) 89s Reading package lists... 90s autopkgtest [18:56:44]: upgrading testbed (apt dist-upgrade and autopurge) 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 90s Starting 2 pkgProblemResolver with broken count: 0 90s Done 90s Entering ResolveByKeep 90s 91s Calculating upgrade... 91s The following packages will be upgraded: 91s fwupd htop libftdi1-2 libfwupd3 libnpth0t64 libsensors-config libsensors5 91s liburcu8t64 nano usb.ids 91s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Need to get 2536 kB of archives. 91s After this operation, 3749 kB disk space will be freed. 91s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x libnpth0t64 s390x 1.8-3 [8778 B] 91s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x libsensors-config all 1:3.6.2-2 [6756 B] 91s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x libsensors5 s390x 1:3.6.2-2 [29.2 kB] 91s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x liburcu8t64 s390x 0.15.2-2 [66.3 kB] 91s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x nano s390x 8.4-1 [299 kB] 91s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x usb.ids all 2025.04.01-1 [223 kB] 91s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x fwupd s390x 2.0.8-3 [1548 kB] 91s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libfwupd3 s390x 2.0.8-3 [135 kB] 91s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x htop s390x 3.4.1-4 [189 kB] 91s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libftdi1-2 s390x 1.5-10 [31.4 kB] 92s Fetched 2536 kB in 1s (3712 kB/s) 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 92s Preparing to unpack .../libnpth0t64_1.8-3_s390x.deb ... 92s Unpacking libnpth0t64:s390x (1.8-3) over (1.8-2) ... 92s Setting up libnpth0t64:s390x (1.8-3) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 92s Preparing to unpack .../0-libsensors-config_1%3a3.6.2-2_all.deb ... 92s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 92s Preparing to unpack .../1-libsensors5_1%3a3.6.2-2_s390x.deb ... 92s Unpacking libsensors5:s390x (1:3.6.2-2) over (1:3.6.0-10) ... 92s Preparing to unpack .../2-liburcu8t64_0.15.2-2_s390x.deb ... 92s Unpacking liburcu8t64:s390x (0.15.2-2) over (0.15.1-1) ... 92s Preparing to unpack .../3-nano_8.4-1_s390x.deb ... 92s Unpacking nano (8.4-1) over (8.3-1) ... 92s Preparing to unpack .../4-usb.ids_2025.04.01-1_all.deb ... 92s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 92s Preparing to unpack .../5-fwupd_2.0.8-3_s390x.deb ... 92s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 92s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 92s Preparing to unpack .../6-libfwupd3_2.0.8-3_s390x.deb ... 92s Unpacking libfwupd3:s390x (2.0.8-3) over (2.0.7-1) ... 92s Preparing to unpack .../7-htop_3.4.1-4_s390x.deb ... 92s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 92s Preparing to unpack .../8-libftdi1-2_1.5-10_s390x.deb ... 92s Unpacking libftdi1-2:s390x (1.5-10) over (1.5-8build1) ... 92s Setting up liburcu8t64:s390x (0.15.2-2) ... 92s Setting up htop (3.4.1-4) ... 92s Setting up libsensors-config (1:3.6.2-2) ... 92s Installing new version of config file /etc/sensors3.conf ... 92s Setting up libfwupd3:s390x (2.0.8-3) ... 92s Setting up libftdi1-2:s390x (1.5-10) ... 92s Setting up usb.ids (2025.04.01-1) ... 92s Setting up libsensors5:s390x (1:3.6.2-2) ... 92s Setting up nano (8.4-1) ... 92s Installing new version of config file /etc/nanorc ... 92s Setting up fwupd (2.0.8-3) ... 93s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 93s fwupd.service is a disabled or a static unit not running, not starting it. 93s Processing triggers for man-db (2.13.0-1) ... 94s Processing triggers for dbus (1.16.2-2ubuntu1) ... 94s Processing triggers for install-info (7.1.1-1) ... 94s Processing triggers for libc-bin (2.41-6ubuntu1) ... 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 95s Solving dependencies... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s autopkgtest [18:56:49]: rebooting testbed after setup commands that affected boot 116s autopkgtest [18:57:10]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr 6 13:39:00 UTC 2025 119s autopkgtest [18:57:13]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 128s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 128s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 128s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 128s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 128s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 128s gpgv: Can't check signature: No public key 128s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 137s autopkgtest [18:57:31]: testing package lammps version 20240207+dfsg-3build3 137s autopkgtest [18:57:31]: build not needed 156s autopkgtest [18:57:50]: test crack: preparing testbed 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 157s The following NEW packages will be installed: 157s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 157s libaec0 libblas3 libcairo2 libdeflate0 libdouble-conversion3 157s libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 libfontconfig1 157s libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 157s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 157s libhdf5-hl-310 libhwloc-plugins libhwloc15 libjbig0 libjpeg-turbo8 libjpeg8 157s libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 libmunge2 libnetcdf22 157s libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 libpmix2t64 157s libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 157s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 157s libtk8.6 libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 157s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 157s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 157s libxrender1 libxshmfence1 libxss1 libxxf86vm1 mesa-libgallium 157s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 157s x11-common 157s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. 157s Need to get 81.8 MB of archives. 157s After this operation, 365 MB of additional disk space will be used. 157s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 158s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 158s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 158s Get:4 http://ftpmaster.internal/ubuntu questing/universe s390x lammps-data all 20240207+dfsg-3build3 [9732 kB] 159s Get:5 http://ftpmaster.internal/ubuntu questing/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 159s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 159s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 159s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 159s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 159s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 159s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 159s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 159s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB] 159s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 159s Get:15 http://ftpmaster.internal/ubuntu questing/universe s390x libdouble-conversion3 s390x 3.3.1-1 [43.3 kB] 159s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10 [7870 B] 159s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x librdmacm1t64 s390x 56.0-4ubuntu1 [74.0 kB] 159s Get:18 http://ftpmaster.internal/ubuntu questing/universe s390x libfabric1 s390x 1.17.0-3.1 [558 kB] 159s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB] 159s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build1 [511 kB] 159s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x libwayland-server0 s390x 1.23.1-3 [37.3 kB] 159s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 159s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 159s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 159s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 159s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 159s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 159s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 159s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x mesa-libgallium s390x 25.0.3-1ubuntu2 [8057 kB] 159s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libgbm1 s390x 25.0.3-1ubuntu2 [34.5 kB] 159s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB] 159s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 159s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libgl1-mesa-dri s390x 25.0.3-1ubuntu2 [35.5 kB] 159s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 159s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 159s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 159s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libglx-mesa0 s390x 25.0.3-1ubuntu2 [161 kB] 159s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 159s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 159s Get:40 http://ftpmaster.internal/ubuntu questing/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 160s Get:41 http://ftpmaster.internal/ubuntu questing/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 160s Get:42 http://ftpmaster.internal/ubuntu questing/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 160s Get:43 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 160s Get:44 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 160s Get:45 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc15 s390x 2.12.0-1 [176 kB] 160s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 160s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 160s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 160s Get:49 http://ftpmaster.internal/ubuntu questing/universe s390x libkim-api2 s390x 2.3.0-1ubuntu1 [602 kB] 160s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 160s Get:51 http://ftpmaster.internal/ubuntu questing/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 160s Get:52 http://ftpmaster.internal/ubuntu questing/universe s390x libmunge2 s390x 0.5.16-1 [15.2 kB] 160s Get:53 http://ftpmaster.internal/ubuntu questing/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB] 160s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 160s Get:55 http://ftpmaster.internal/ubuntu questing/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1build1 [41.1 kB] 160s Get:56 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc-plugins s390x 2.12.0-1 [16.1 kB] 160s Get:57 http://ftpmaster.internal/ubuntu questing/universe s390x libpmix2t64 s390x 5.0.6-5 [715 kB] 160s Get:58 http://ftpmaster.internal/ubuntu questing/universe s390x libopenmpi40 s390x 5.0.7-1 [2196 kB] 160s Get:59 http://ftpmaster.internal/ubuntu questing/universe s390x libpnetcdf6 s390x 1.14.0-2 [1172 kB] 160s Get:60 http://ftpmaster.internal/ubuntu questing/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 160s Get:61 http://ftpmaster.internal/ubuntu questing/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 160s Get:62 http://ftpmaster.internal/ubuntu questing/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 160s Get:63 http://ftpmaster.internal/ubuntu questing/universe s390x proj-data all 9.5.1-1 [7924 kB] 160s Get:64 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 160s Get:65 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 160s Get:66 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 160s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.7.0-3ubuntu1 [219 kB] 160s Get:68 http://ftpmaster.internal/ubuntu questing/universe s390x libproj25 s390x 9.5.1-1 [1452 kB] 160s Get:69 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbbind-2-5 s390x 2022.0.0-2 [15.3 kB] 160s Get:70 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbmalloc2 s390x 2022.0.0-2 [57.7 kB] 160s Get:71 http://ftpmaster.internal/ubuntu questing/universe s390x libtbb12 s390x 2022.0.0-2 [99.9 kB] 160s Get:72 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 160s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x libtheoradec1 s390x 1.2.0~alpha1+dfsg-6 [68.6 kB] 160s Get:74 http://ftpmaster.internal/ubuntu questing/main s390x libtheoraenc1 s390x 1.2.0~alpha1+dfsg-6 [142 kB] 160s Get:75 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 160s Get:76 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 160s Get:77 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 160s Get:78 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 160s Get:79 http://ftpmaster.internal/ubuntu questing/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-4ubuntu1 [27.1 MB] 161s Get:80 http://ftpmaster.internal/ubuntu questing/universe s390x liblammps0t64 s390x 20240207+dfsg-3build3 [7859 kB] 161s Get:81 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-common all 5.0.7-1 [97.9 kB] 161s Get:82 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-bin s390x 5.0.7-1 [200 kB] 161s Get:83 http://ftpmaster.internal/ubuntu questing/universe s390x mpi-default-bin s390x 1.18 [2510 B] 161s Get:84 http://ftpmaster.internal/ubuntu questing/universe s390x lammps s390x 20240207+dfsg-3build3 [15.3 kB] 162s Fetched 81.8 MB in 4s (19.8 MB/s) 162s Selecting previously unselected package fonts-dejavu-mono. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81470 files and directories currently installed.) 162s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 162s Unpacking fonts-dejavu-mono (2.37-8) ... 162s Selecting previously unselected package fonts-dejavu-core. 162s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 162s Unpacking fonts-dejavu-core (2.37-8) ... 162s Selecting previously unselected package fontconfig-config. 162s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 162s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 162s Selecting previously unselected package lammps-data. 162s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 162s Unpacking lammps-data (20240207+dfsg-3build3) ... 162s Selecting previously unselected package libaec0:s390x. 162s Preparing to unpack .../04-libaec0_1.1.3-1_s390x.deb ... 162s Unpacking libaec0:s390x (1.1.3-1) ... 162s Selecting previously unselected package libblas3:s390x. 162s Preparing to unpack .../05-libblas3_3.12.1-2_s390x.deb ... 162s Unpacking libblas3:s390x (3.12.1-2) ... 162s Selecting previously unselected package libfreetype6:s390x. 162s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 162s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 162s Selecting previously unselected package libfontconfig1:s390x. 162s Preparing to unpack .../07-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 162s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 162s Selecting previously unselected package libpixman-1-0:s390x. 162s Preparing to unpack .../08-libpixman-1-0_0.44.0-3_s390x.deb ... 162s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 162s Selecting previously unselected package libxcb-render0:s390x. 163s Preparing to unpack .../09-libxcb-render0_1.17.0-2_s390x.deb ... 163s Unpacking libxcb-render0:s390x (1.17.0-2) ... 163s Selecting previously unselected package libxcb-shm0:s390x. 163s Preparing to unpack .../10-libxcb-shm0_1.17.0-2_s390x.deb ... 163s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 163s Selecting previously unselected package libxrender1:s390x. 163s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 163s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 163s Selecting previously unselected package libcairo2:s390x. 163s Preparing to unpack .../12-libcairo2_1.18.4-1_s390x.deb ... 163s Unpacking libcairo2:s390x (1.18.4-1) ... 163s Selecting previously unselected package libdeflate0:s390x. 163s Preparing to unpack .../13-libdeflate0_1.23-1_s390x.deb ... 163s Unpacking libdeflate0:s390x (1.23-1) ... 163s Selecting previously unselected package libdouble-conversion3:s390x. 163s Preparing to unpack .../14-libdouble-conversion3_3.3.1-1_s390x.deb ... 163s Unpacking libdouble-conversion3:s390x (3.3.1-1) ... 163s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 163s Preparing to unpack .../15-libevent-pthreads-2.1-7t64_2.1.12-stable-10_s390x.deb ... 163s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 163s Selecting previously unselected package librdmacm1t64:s390x. 163s Preparing to unpack .../16-librdmacm1t64_56.0-4ubuntu1_s390x.deb ... 163s Unpacking librdmacm1t64:s390x (56.0-4ubuntu1) ... 163s Selecting previously unselected package libfabric1:s390x. 163s Preparing to unpack .../17-libfabric1_1.17.0-3.1_s390x.deb ... 163s Unpacking libfabric1:s390x (1.17.0-3.1) ... 163s Selecting previously unselected package libgomp1:s390x. 163s Preparing to unpack .../18-libgomp1_15-20250404-0ubuntu1_s390x.deb ... 163s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ... 163s Selecting previously unselected package libfftw3-double3:s390x. 163s Preparing to unpack .../19-libfftw3-double3_3.3.10-2fakesync1build1_s390x.deb ... 163s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 163s Selecting previously unselected package libwayland-server0:s390x. 163s Preparing to unpack .../20-libwayland-server0_1.23.1-3_s390x.deb ... 163s Unpacking libwayland-server0:s390x (1.23.1-3) ... 163s Selecting previously unselected package libx11-xcb1:s390x. 163s Preparing to unpack .../21-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 163s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 163s Selecting previously unselected package libxcb-dri3-0:s390x. 163s Preparing to unpack .../22-libxcb-dri3-0_1.17.0-2_s390x.deb ... 163s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 163s Selecting previously unselected package libxcb-present0:s390x. 163s Preparing to unpack .../23-libxcb-present0_1.17.0-2_s390x.deb ... 163s Unpacking libxcb-present0:s390x (1.17.0-2) ... 163s Selecting previously unselected package libxcb-randr0:s390x. 163s Preparing to unpack .../24-libxcb-randr0_1.17.0-2_s390x.deb ... 163s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 163s Selecting previously unselected package libxcb-sync1:s390x. 163s Preparing to unpack .../25-libxcb-sync1_1.17.0-2_s390x.deb ... 163s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 163s Selecting previously unselected package libxcb-xfixes0:s390x. 163s Preparing to unpack .../26-libxcb-xfixes0_1.17.0-2_s390x.deb ... 163s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 163s Selecting previously unselected package libxshmfence1:s390x. 163s Preparing to unpack .../27-libxshmfence1_1.3-1build5_s390x.deb ... 163s Unpacking libxshmfence1:s390x (1.3-1build5) ... 163s Selecting previously unselected package mesa-libgallium:s390x. 163s Preparing to unpack .../28-mesa-libgallium_25.0.3-1ubuntu2_s390x.deb ... 163s Unpacking mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 163s Selecting previously unselected package libgbm1:s390x. 163s Preparing to unpack .../29-libgbm1_25.0.3-1ubuntu2_s390x.deb ... 163s Unpacking libgbm1:s390x (25.0.3-1ubuntu2) ... 163s Selecting previously unselected package libgfortran5:s390x. 163s Preparing to unpack .../30-libgfortran5_15-20250404-0ubuntu1_s390x.deb ... 163s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ... 163s Selecting previously unselected package libvulkan1:s390x. 163s Preparing to unpack .../31-libvulkan1_1.4.304.0-1_s390x.deb ... 163s Unpacking libvulkan1:s390x (1.4.304.0-1) ... 163s Selecting previously unselected package libgl1-mesa-dri:s390x. 163s Preparing to unpack .../32-libgl1-mesa-dri_25.0.3-1ubuntu2_s390x.deb ... 163s Unpacking libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 163s Selecting previously unselected package libglvnd0:s390x. 163s Preparing to unpack .../33-libglvnd0_1.7.0-1build1_s390x.deb ... 163s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 163s Selecting previously unselected package libxcb-glx0:s390x. 163s Preparing to unpack .../34-libxcb-glx0_1.17.0-2_s390x.deb ... 163s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 163s Selecting previously unselected package libxxf86vm1:s390x. 163s Preparing to unpack .../35-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 163s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 163s Selecting previously unselected package libglx-mesa0:s390x. 163s Preparing to unpack .../36-libglx-mesa0_25.0.3-1ubuntu2_s390x.deb ... 163s Unpacking libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 163s Selecting previously unselected package libglx0:s390x. 163s Preparing to unpack .../37-libglx0_1.7.0-1build1_s390x.deb ... 163s Unpacking libglx0:s390x (1.7.0-1build1) ... 163s Selecting previously unselected package libgl1:s390x. 163s Preparing to unpack .../38-libgl1_1.7.0-1build1_s390x.deb ... 163s Unpacking libgl1:s390x (1.7.0-1build1) ... 163s Selecting previously unselected package libgl2ps1.4. 163s Preparing to unpack .../39-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 163s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 163s Selecting previously unselected package libglew2.2:s390x. 163s Preparing to unpack .../40-libglew2.2_2.2.0-4build1_s390x.deb ... 163s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 163s Selecting previously unselected package libsz2:s390x. 163s Preparing to unpack .../41-libsz2_1.1.3-1_s390x.deb ... 163s Unpacking libsz2:s390x (1.1.3-1) ... 163s Selecting previously unselected package libhdf5-310:s390x. 163s Preparing to unpack .../42-libhdf5-310_1.14.5+repack-3_s390x.deb ... 163s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 163s Selecting previously unselected package libhdf5-hl-310:s390x. 163s Preparing to unpack .../43-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 163s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 163s Selecting previously unselected package libhwloc15:s390x. 163s Preparing to unpack .../44-libhwloc15_2.12.0-1_s390x.deb ... 163s Unpacking libhwloc15:s390x (2.12.0-1) ... 163s Selecting previously unselected package libjpeg-turbo8:s390x. 163s Preparing to unpack .../45-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 163s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 163s Selecting previously unselected package libjpeg8:s390x. 163s Preparing to unpack .../46-libjpeg8_8c-2ubuntu11_s390x.deb ... 163s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 163s Selecting previously unselected package libjsoncpp26:s390x. 163s Preparing to unpack .../47-libjsoncpp26_1.9.6-3_s390x.deb ... 163s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 163s Selecting previously unselected package libkim-api2:s390x. 163s Preparing to unpack .../48-libkim-api2_2.3.0-1ubuntu1_s390x.deb ... 163s Unpacking libkim-api2:s390x (2.3.0-1ubuntu1) ... 163s Selecting previously unselected package liblapack3:s390x. 163s Preparing to unpack .../49-liblapack3_3.12.1-2_s390x.deb ... 163s Unpacking liblapack3:s390x (3.12.1-2) ... 163s Selecting previously unselected package libnetcdf22:s390x. 163s Preparing to unpack .../50-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 163s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 163s Selecting previously unselected package libmunge2:s390x. 163s Preparing to unpack .../51-libmunge2_0.5.16-1_s390x.deb ... 163s Unpacking libmunge2:s390x (0.5.16-1) ... 163s Selecting previously unselected package libpciaccess0:s390x. 163s Preparing to unpack .../52-libpciaccess0_0.17-3build1_s390x.deb ... 163s Unpacking libpciaccess0:s390x (0.17-3build1) ... 163s Selecting previously unselected package libxnvctrl0:s390x. 163s Preparing to unpack .../53-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 163s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 163s Selecting previously unselected package ocl-icd-libopencl1:s390x. 163s Preparing to unpack .../54-ocl-icd-libopencl1_2.3.2-1build1_s390x.deb ... 163s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 163s Selecting previously unselected package libhwloc-plugins:s390x. 163s Preparing to unpack .../55-libhwloc-plugins_2.12.0-1_s390x.deb ... 163s Unpacking libhwloc-plugins:s390x (2.12.0-1) ... 163s Selecting previously unselected package libpmix2t64:s390x. 163s Preparing to unpack .../56-libpmix2t64_5.0.6-5_s390x.deb ... 163s Unpacking libpmix2t64:s390x (5.0.6-5) ... 163s Selecting previously unselected package libopenmpi40:s390x. 163s Preparing to unpack .../57-libopenmpi40_5.0.7-1_s390x.deb ... 163s Unpacking libopenmpi40:s390x (5.0.7-1) ... 163s Selecting previously unselected package libpnetcdf6:s390x. 163s Preparing to unpack .../58-libpnetcdf6_1.14.0-2_s390x.deb ... 163s Unpacking libpnetcdf6:s390x (1.14.0-2) ... 164s Selecting previously unselected package libvoro++1. 164s Preparing to unpack .../59-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 164s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 164s Selecting previously unselected package libogg0:s390x. 164s Preparing to unpack .../60-libogg0_1.3.5-3build1_s390x.deb ... 164s Unpacking libogg0:s390x (1.3.5-3build1) ... 164s Selecting previously unselected package libopengl0:s390x. 164s Preparing to unpack .../61-libopengl0_1.7.0-1build1_s390x.deb ... 164s Unpacking libopengl0:s390x (1.7.0-1build1) ... 164s Selecting previously unselected package proj-data. 164s Preparing to unpack .../62-proj-data_9.5.1-1_all.deb ... 164s Unpacking proj-data (9.5.1-1) ... 164s Selecting previously unselected package libjbig0:s390x. 164s Preparing to unpack .../63-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 164s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 164s Selecting previously unselected package libsharpyuv0:s390x. 164s Preparing to unpack .../64-libsharpyuv0_1.5.0-0.1_s390x.deb ... 164s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 164s Selecting previously unselected package libwebp7:s390x. 164s Preparing to unpack .../65-libwebp7_1.5.0-0.1_s390x.deb ... 164s Unpacking libwebp7:s390x (1.5.0-0.1) ... 164s Selecting previously unselected package libtiff6:s390x. 164s Preparing to unpack .../66-libtiff6_4.7.0-3ubuntu1_s390x.deb ... 164s Unpacking libtiff6:s390x (4.7.0-3ubuntu1) ... 164s Selecting previously unselected package libproj25:s390x. 164s Preparing to unpack .../67-libproj25_9.5.1-1_s390x.deb ... 164s Unpacking libproj25:s390x (9.5.1-1) ... 164s Selecting previously unselected package libtbbbind-2-5:s390x. 164s Preparing to unpack .../68-libtbbbind-2-5_2022.0.0-2_s390x.deb ... 164s Unpacking libtbbbind-2-5:s390x (2022.0.0-2) ... 164s Selecting previously unselected package libtbbmalloc2:s390x. 164s Preparing to unpack .../69-libtbbmalloc2_2022.0.0-2_s390x.deb ... 164s Unpacking libtbbmalloc2:s390x (2022.0.0-2) ... 164s Selecting previously unselected package libtbb12:s390x. 164s Preparing to unpack .../70-libtbb12_2022.0.0-2_s390x.deb ... 164s Unpacking libtbb12:s390x (2022.0.0-2) ... 164s Selecting previously unselected package libtcl8.6:s390x. 164s Preparing to unpack .../71-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 164s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 164s Selecting previously unselected package libtheoradec1:s390x. 164s Preparing to unpack .../72-libtheoradec1_1.2.0~alpha1+dfsg-6_s390x.deb ... 164s Unpacking libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 164s Selecting previously unselected package libtheoraenc1:s390x. 164s Preparing to unpack .../73-libtheoraenc1_1.2.0~alpha1+dfsg-6_s390x.deb ... 164s Unpacking libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 164s Selecting previously unselected package libxft2:s390x. 164s Preparing to unpack .../74-libxft2_2.3.6-1build1_s390x.deb ... 164s Unpacking libxft2:s390x (2.3.6-1build1) ... 164s Selecting previously unselected package x11-common. 164s Preparing to unpack .../75-x11-common_1%3a7.7+23ubuntu4_all.deb ... 164s Unpacking x11-common (1:7.7+23ubuntu4) ... 164s Selecting previously unselected package libxss1:s390x. 164s Preparing to unpack .../76-libxss1_1%3a1.2.3-1build3_s390x.deb ... 164s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 164s Selecting previously unselected package libtk8.6:s390x. 164s Preparing to unpack .../77-libtk8.6_8.6.16-1_s390x.deb ... 164s Unpacking libtk8.6:s390x (8.6.16-1) ... 164s Selecting previously unselected package libvtk9.3:s390x. 164s Preparing to unpack .../78-libvtk9.3_9.3.0+dfsg1-4ubuntu1_s390x.deb ... 164s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 165s Selecting previously unselected package liblammps0t64:s390x. 165s Preparing to unpack .../79-liblammps0t64_20240207+dfsg-3build3_s390x.deb ... 165s Unpacking liblammps0t64:s390x (20240207+dfsg-3build3) ... 165s Selecting previously unselected package openmpi-common. 165s Preparing to unpack .../80-openmpi-common_5.0.7-1_all.deb ... 165s Unpacking openmpi-common (5.0.7-1) ... 165s Selecting previously unselected package openmpi-bin. 165s Preparing to unpack .../81-openmpi-bin_5.0.7-1_s390x.deb ... 165s Unpacking openmpi-bin (5.0.7-1) ... 165s Selecting previously unselected package mpi-default-bin. 165s Preparing to unpack .../82-mpi-default-bin_1.18_s390x.deb ... 165s Unpacking mpi-default-bin (1.18) ... 165s Selecting previously unselected package lammps. 165s Preparing to unpack .../83-lammps_20240207+dfsg-3build3_s390x.deb ... 165s Unpacking lammps (20240207+dfsg-3build3) ... 165s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 165s Setting up libtbbmalloc2:s390x (2022.0.0-2) ... 165s Setting up libpixman-1-0:s390x (0.44.0-3) ... 165s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 165s Setting up libwayland-server0:s390x (1.23.1-3) ... 165s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 165s Setting up libpciaccess0:s390x (0.17-3build1) ... 165s Setting up libdouble-conversion3:s390x (3.3.1-1) ... 165s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 165s Setting up libogg0:s390x (1.3.5-3build1) ... 165s Setting up proj-data (9.5.1-1) ... 165s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 165s Setting up lammps-data (20240207+dfsg-3build3) ... 165s Setting up libxcb-render0:s390x (1.17.0-2) ... 165s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 165s Setting up libglvnd0:s390x (1.7.0-1build1) ... 165s Setting up libxcb-glx0:s390x (1.17.0-2) ... 165s Setting up x11-common (1:7.7+23ubuntu4) ... 165s Setting up libdeflate0:s390x (1.23-1) ... 165s Setting up libxcb-shm0:s390x (1.17.0-2) ... 165s Setting up libgomp1:s390x (15-20250404-0ubuntu1) ... 165s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 165s Setting up libaec0:s390x (1.1.3-1) ... 165s Setting up libopengl0:s390x (1.7.0-1build1) ... 165s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 165s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 165s Setting up libxcb-present0:s390x (1.17.0-2) ... 165s Setting up libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 165s Setting up libblas3:s390x (3.12.1-2) ... 165s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 165s Setting up libmunge2:s390x (0.5.16-1) ... 165s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 165s Setting up libxcb-sync1:s390x (1.17.0-2) ... 165s Setting up libjsoncpp26:s390x (1.9.6-3) ... 165s Setting up fonts-dejavu-mono (2.37-8) ... 165s Setting up libhwloc15:s390x (2.12.0-1) ... 165s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 165s Setting up fonts-dejavu-core (2.37-8) ... 165s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 165s Setting up libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 165s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ... 165s Setting up libvulkan1:s390x (1.4.304.0-1) ... 165s Setting up libwebp7:s390x (1.5.0-0.1) ... 165s Setting up ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 165s Setting up libxshmfence1:s390x (1.3-1build5) ... 165s Setting up libxcb-randr0:s390x (1.17.0-2) ... 165s Setting up openmpi-common (5.0.7-1) ... 165s Setting up librdmacm1t64:s390x (56.0-4ubuntu1) ... 165s Setting up libxss1:s390x (1:1.2.3-1build3) ... 165s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 165s Setting up libsz2:s390x (1.1.3-1) ... 165s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 165s Setting up libfabric1:s390x (1.17.0-3.1) ... 165s Setting up mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 165s Setting up liblapack3:s390x (3.12.1-2) ... 165s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 165s Setting up libgbm1:s390x (25.0.3-1ubuntu2) ... 165s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 165s Setting up libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 165s Setting up libkim-api2:s390x (2.3.0-1ubuntu1) ... 165s Setting up libhwloc-plugins:s390x (2.12.0-1) ... 165s Setting up libtbbbind-2-5:s390x (2022.0.0-2) ... 165s Setting up libpmix2t64:s390x (5.0.6-5) ... 165s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 165s Setting up libtiff6:s390x (4.7.0-3ubuntu1) ... 165s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 165s Setting up libopenmpi40:s390x (5.0.7-1) ... 165s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 165s Setting up libxft2:s390x (2.3.6-1build1) ... 165s Setting up libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 165s Setting up libglx0:s390x (1.7.0-1build1) ... 165s Setting up libproj25:s390x (9.5.1-1) ... 165s Setting up libpnetcdf6:s390x (1.14.0-2) ... 165s Setting up libtk8.6:s390x (8.6.16-1) ... 165s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 165s Setting up libtbb12:s390x (2022.0.0-2) ... 165s Setting up libcairo2:s390x (1.18.4-1) ... 165s Setting up libgl1:s390x (1.7.0-1build1) ... 165s Setting up libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 165s Setting up libglew2.2:s390x (2.2.0-4build1) ... 165s Setting up openmpi-bin (5.0.7-1) ... 165s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 165s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 165s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 165s Setting up mpi-default-bin (1.18) ... 165s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 165s Setting up libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 165s Setting up liblammps0t64:s390x (20240207+dfsg-3build3) ... 165s Setting up lammps (20240207+dfsg-3build3) ... 165s Processing triggers for man-db (2.13.0-1) ... 168s Processing triggers for libc-bin (2.41-6ubuntu1) ... 169s autopkgtest [18:58:03]: test crack: [----------------------- 169s LAMMPS (7 Feb 2024 - Update 1) 169s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 169s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 169s using 1 OpenMP thread(s) per MPI task 169s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 169s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 169s 2 by 1 by 1 MPI processor grid 169s Created 8141 atoms 169s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 169s create_atoms CPU = 0.001 seconds 169s 302 atoms in group lower 169s 302 atoms in group upper 169s 604 atoms in group boundary 169s 7537 atoms in group mobile 169s 841 atoms in group leftupper 169s 841 atoms in group leftlower 169s Setting atom values ... 169s 841 settings made for type 169s Setting atom values ... 169s 841 settings made for type 169s Setting atom values ... 169s 302 settings made for type 169s Setting atom values ... 169s 302 settings made for type 169s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 169s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 169s Neighbor list info ... 169s update: every = 1 steps, delay = 5 steps, check = yes 169s max neighbors/atom: 2000, page size: 100000 169s master list distance cutoff = 2.8 169s ghost atom cutoff = 2.8 169s binsize = 1.4, bins = 80 56 1 169s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 169s (1) pair lj/cut, perpetual 169s attributes: half, newton on 169s pair build: half/bin/atomonly/newton 169s stencil: half/bin/2d 169s bin: standard 169s Setting up Verlet run ... 169s Unit style : lj 169s Current step : 0 169s Time step : 0.003 169s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 169s Step Temp E_pair E_mol TotEng Press Volume 169s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 169s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 169s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 169s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 169s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 169s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 170s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 170s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 170s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 170s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 170s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 171s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 171s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 171s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 171s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 171s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 171s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 171s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 172s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 172s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 172s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 172s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 172s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 172s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 173s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 173s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 173s Loop time of 3.84862 on 2 procs for 5000 steps with 8141 atoms 173s 173s Performance: 336743.777 tau/day, 1299.166 timesteps/s, 10.577 Matom-step/s 173s 81.3% CPU use with 2 MPI tasks x 1 OpenMP threads 173s 173s MPI task timing breakdown: 173s Section | min time | avg time | max time |%varavg| %total 173s --------------------------------------------------------------- 173s Pair | 2.5657 | 2.6101 | 2.6546 | 2.8 | 67.82 173s Neigh | 0.14549 | 0.14655 | 0.1476 | 0.3 | 3.81 173s Comm | 0.62687 | 0.66541 | 0.70395 | 4.7 | 17.29 173s Output | 0.0012649 | 0.0037711 | 0.0062774 | 4.1 | 0.10 173s Modify | 0.25311 | 0.25345 | 0.25379 | 0.1 | 6.59 173s Other | | 0.1693 | | | 4.40 173s 173s Nlocal: 4070.5 ave 4085 max 4056 min 173s Histogram: 1 0 0 0 0 0 0 0 0 1 173s Nghost: 207 ave 208 max 206 min 173s Histogram: 1 0 0 0 0 0 0 0 0 1 173s Neighs: 35700 ave 35927 max 35473 min 173s Histogram: 1 0 0 0 0 0 0 0 0 1 173s 173s Total # of neighbors = 71400 173s Ave neighs/atom = 8.7704213 173s Neighbor list builds = 106 173s Dangerous builds = 0 173s Total wall time: 0:00:03 173s LAMMPS (7 Feb 2024 - Update 1) 179s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 179s using 1 OpenMP thread(s) per MPI task 179s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 179s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 179s 1 by 1 by 1 MPI processor grid 179s Created 8141 atoms 179s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 179s create_atoms CPU = 0.001 seconds 179s 302 atoms in group lower 179s 302 atoms in group upper 179s 604 atoms in group boundary 179s 7537 atoms in group mobile 179s 841 atoms in group leftupper 179s 841 atoms in group leftlower 179s Setting atom values ... 179s 841 settings made for type 179s Setting atom values ... 179s 841 settings made for type 179s Setting atom values ... 179s 302 settings made for type 179s Setting atom values ... 179s 302 settings made for type 179s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 179s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 179s Neighbor list info ... 179s update: every = 1 steps, delay = 5 steps, check = yes 179s max neighbors/atom: 2000, page size: 100000 179s master list distance cutoff = 2.8 179s ghost atom cutoff = 2.8 179s binsize = 1.4, bins = 80 56 1 179s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 179s (1) pair lj/cut, perpetual 179s attributes: half, newton on 179s pair build: half/bin/atomonly/newton 179s stencil: half/bin/2d 179s bin: standard 179s Setting up Verlet run ... 179s Unit style : lj 179s Current step : 0 179s Time step : 0.003 179s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 179s Step Temp E_pair E_mol TotEng Press Volume 179s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 179s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 179s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 179s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 179s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 179s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 179s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 179s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 179s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 179s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 179s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 179s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 179s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 179s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 179s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 179s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 179s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 179s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 179s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 179s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 179s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 179s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 179s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 180s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 180s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 180s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 180s Loop time of 6.69202 on 1 procs for 5000 steps with 8141 atoms 180s 180s Performance: 193663.363 tau/day, 747.158 timesteps/s, 6.083 Matom-step/s 180s 77.5% CPU use with 1 MPI tasks x 1 OpenMP threads 180s 180s MPI task timing breakdown: 180s Section | min time | avg time | max time |%varavg| %total 180s --------------------------------------------------------------- 180s Pair | 5.5599 | 5.5599 | 5.5599 | 0.0 | 83.08 180s Neigh | 0.36725 | 0.36725 | 0.36725 | 0.0 | 5.49 180s Comm | 0.0038962 | 0.0038962 | 0.0038962 | 0.0 | 0.06 180s Output | 0.00302 | 0.00302 | 0.00302 | 0.0 | 0.05 180s Modify | 0.59856 | 0.59856 | 0.59856 | 0.0 | 8.94 180s Other | | 0.1594 | | | 2.38 180s 180s Nlocal: 8141 ave 8141 max 8141 min 180s Histogram: 1 0 0 0 0 0 0 0 0 0 180s Nghost: 0 ave 0 max 0 min 180s Histogram: 1 0 0 0 0 0 0 0 0 0 180s Neighs: 71389 ave 71389 max 71389 min 180s Histogram: 1 0 0 0 0 0 0 0 0 0 180s 180s Total # of neighbors = 71389 180s Ave neighs/atom = 8.7690701 180s Neighbor list builds = 100 180s Dangerous builds = 0 180s Total wall time: 0:00:06 180s run: OK 180s autopkgtest [18:58:14]: test crack: -----------------------] 180s crack PASS 180s autopkgtest [18:58:14]: test crack: - - - - - - - - - - results - - - - - - - - - - 181s autopkgtest [18:58:15]: test dipole: preparing testbed 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 181s Starting pkgProblemResolver with broken count: 0 181s Starting 2 pkgProblemResolver with broken count: 0 181s Done 182s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s autopkgtest [18:58:17]: test dipole: [----------------------- 183s LAMMPS (7 Feb 2024 - Update 1) 183s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 183s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 183s using 1 OpenMP thread(s) per MPI task 183s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 183s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 183s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 183s 2 by 1 by 1 MPI processor grid 183s Created 200 atoms 183s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 183s create_atoms CPU = 0.000 seconds 183s Setting atom values ... 183s 200 settings made for mass 183s Setting atom values ... 183s 200 settings made for dipole/random 183s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 183s Neighbor list info ... 183s update: every = 1 steps, delay = 0 steps, check = yes 183s max neighbors/atom: 2000, page size: 100000 183s master list distance cutoff = 2.8 183s ghost atom cutoff = 2.8 183s binsize = 1.4, bins = 13 13 2 183s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 183s (1) pair lj/cut/dipole/cut, perpetual 183s attributes: half, newton on 183s pair build: half/bin/atomonly/newton 183s stencil: half/bin/2d 183s bin: standard 183s Setting up Verlet run ... 183s Unit style : lj 183s Current step : 0 183s Time step : 0.005 183s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 183s Step Temp E_pair c_erot TotEng Press 183s 0 0 -2.1717485 0 -2.1717485 -2.5549017 183s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 183s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 183s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 183s 2000 0.41682156 -2.8150619 0.2305314 -2.4003245 -0.12755885 183s 2500 0.4223725 -2.7993826 0.21202048 -2.3791219 -0.42760254 183s 3000 0.40674172 -2.7701159 0.20435228 -2.3654079 0.12191183 183s 3500 0.41566211 -2.7940342 0.2127683 -2.3804504 -0.047420259 183s 4000 0.39899304 -2.7922419 0.23261768 -2.3952438 -0.5584713 183s 4500 0.41521411 -2.7902637 0.21553109 -2.3771257 -0.39868711 183s 5000 0.43435521 -2.7839342 0.20079255 -2.3517508 -0.23557371 183s 5500 0.43573361 -2.832029 0.24954704 -2.3984741 -0.30757008 183s 6000 0.43444077 -2.7971759 0.22707649 -2.3649073 -0.050026659 183s 6500 0.45018406 -2.802489 0.21507806 -2.3545558 -0.24632195 183s 7000 0.50302088 -2.8284285 0.19272668 -2.3279228 0.21477101 183s 7500 0.40216423 -2.7684646 0.24505695 -2.3683112 -0.038037764 183s 8000 0.41559297 -2.759803 0.23021572 -2.346288 -0.2498825 183s 8500 0.44167949 -2.7440933 0.20455344 -2.3046222 0.035670346 183s 9000 0.4218566 -2.7577529 0.23796636 -2.3380055 -0.4366142 184s 9500 0.46009563 -2.7683135 0.2289365 -2.3105184 -0.11500533 184s 10000 0.41474987 -2.747283 0.25293544 -2.3346069 -0.20525996 184s Loop time of 0.463886 on 2 procs for 10000 steps with 200 atoms 184s 184s Performance: 9312626.060 tau/day, 21557.005 timesteps/s, 4.311 Matom-step/s 184s 96.7% CPU use with 2 MPI tasks x 1 OpenMP threads 184s 184s MPI task timing breakdown: 184s Section | min time | avg time | max time |%varavg| %total 184s --------------------------------------------------------------- 184s Pair | 0.30177 | 0.31759 | 0.33341 | 2.8 | 68.46 184s Neigh | 0.016484 | 0.016918 | 0.017351 | 0.3 | 3.65 184s Comm | 0.071444 | 0.090105 | 0.10877 | 6.2 | 19.42 184s Output | 0.00029493 | 0.0004691 | 0.00064328 | 0.0 | 0.10 184s Modify | 0.024594 | 0.024875 | 0.025157 | 0.2 | 5.36 184s Other | | 0.01393 | | | 3.00 184s 184s Nlocal: 100 ave 100 max 100 min 184s Histogram: 2 0 0 0 0 0 0 0 0 0 184s Nghost: 122.5 ave 125 max 120 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s Neighs: 801 ave 817 max 785 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s 184s Total # of neighbors = 1602 184s Ave neighs/atom = 8.01 184s Neighbor list builds = 681 184s Dangerous builds = 0 184s Total wall time: 0:00:00 184s LAMMPS (7 Feb 2024 - Update 1) 184s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 184s using 1 OpenMP thread(s) per MPI task 184s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 184s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 184s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 184s 1 by 1 by 1 MPI processor grid 184s Created 200 atoms 184s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 184s create_atoms CPU = 0.000 seconds 184s Setting atom values ... 184s 200 settings made for mass 184s Setting atom values ... 184s 200 settings made for dipole/random 184s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 184s Neighbor list info ... 184s update: every = 1 steps, delay = 0 steps, check = yes 184s max neighbors/atom: 2000, page size: 100000 184s master list distance cutoff = 2.8 184s ghost atom cutoff = 2.8 184s binsize = 1.4, bins = 13 13 2 184s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 184s (1) pair lj/cut/dipole/cut, perpetual 184s attributes: half, newton on 184s pair build: half/bin/atomonly/newton 184s stencil: half/bin/2d 184s bin: standard 184s Setting up Verlet run ... 184s Unit style : lj 184s Current step : 0 184s Time step : 0.005 184s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 184s Step Temp E_pair c_erot TotEng Press 184s 0 0 -2.1717485 0 -2.1717485 -2.5549017 184s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 184s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 184s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355613 184s 2000 0.4168217 -2.8150621 0.2305314 -2.4003245 -0.12755874 184s 2500 0.42235256 -2.79937 0.21201967 -2.3791292 -0.42752528 184s 3000 0.40118286 -2.7566267 0.19795371 -2.3574498 0.17122949 184s 3500 0.41913359 -2.789969 0.21614734 -2.3729311 -0.22517024 184s 4000 0.4121296 -2.7638868 0.20353041 -2.3538179 -0.07160792 184s 4500 0.45366888 -2.8425735 0.24841497 -2.391173 0.11913846 184s 5000 0.4311204 -2.8002159 0.22949783 -2.3712511 0.23492578 184s 5500 0.44426372 -2.7935996 0.21466537 -2.3515572 0.16360579 184s 6000 0.43178553 -2.7534884 0.19794383 -2.3238618 -0.16038048 184s 6500 0.4124462 -2.7482024 0.21992912 -2.3378185 -0.18038226 184s 7000 0.41507218 -2.7528753 0.21771614 -2.3398785 -0.062657125 184s 7500 0.45230794 -2.7783727 0.21423215 -2.3283263 -0.044538456 184s 8000 0.42726335 -2.7931306 0.26364827 -2.3680036 -0.24929222 184s 8500 0.41614819 -2.7456553 0.23149494 -2.3315878 0.059511435 184s 9000 0.46797377 -2.791191 0.21950369 -2.3255571 -0.094337938 184s 9500 0.44990418 -2.7984325 0.24896606 -2.3507778 -0.34897551 184s 10000 0.45951563 -2.7688659 0.21262443 -2.3116478 -0.29263014 184s Loop time of 0.748264 on 1 procs for 10000 steps with 200 atoms 184s 184s Performance: 5773365.958 tau/day, 13364.273 timesteps/s, 2.673 Matom-step/s 184s 98.8% CPU use with 1 MPI tasks x 1 OpenMP threads 184s 184s MPI task timing breakdown: 184s Section | min time | avg time | max time |%varavg| %total 184s --------------------------------------------------------------- 184s Pair | 0.6208 | 0.6208 | 0.6208 | 0.0 | 82.97 184s Neigh | 0.033644 | 0.033644 | 0.033644 | 0.0 | 4.50 184s Comm | 0.027486 | 0.027486 | 0.027486 | 0.0 | 3.67 184s Output | 0.00036734 | 0.00036734 | 0.00036734 | 0.0 | 0.05 184s Modify | 0.056433 | 0.056433 | 0.056433 | 0.0 | 7.54 184s Other | | 0.009533 | | | 1.27 184s 184s Nlocal: 200 ave 200 max 200 min 184s Histogram: 1 0 0 0 0 0 0 0 0 0 184s Nghost: 146 ave 146 max 146 min 184s Histogram: 1 0 0 0 0 0 0 0 0 0 184s Neighs: 1608 ave 1608 max 1608 min 184s Histogram: 1 0 0 0 0 0 0 0 0 0 184s 184s Total # of neighbors = 1608 184s Ave neighs/atom = 8.04 184s Neighbor list builds = 685 184s Dangerous builds = 0 184s Total wall time: 0:00:00 184s run: OK 185s autopkgtest [18:58:19]: test dipole: -----------------------] 185s dipole PASS 185s autopkgtest [18:58:19]: test dipole: - - - - - - - - - - results - - - - - - - - - - 185s autopkgtest [18:58:19]: test ellipse: preparing testbed 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 186s Starting pkgProblemResolver with broken count: 0 186s Starting 2 pkgProblemResolver with broken count: 0 186s Done 186s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 187s autopkgtest [18:58:21]: test ellipse: [----------------------- 187s LAMMPS (7 Feb 2024 - Update 1) 187s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 187s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 187s using 1 OpenMP thread(s) per MPI task 187s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 187s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 187s 2 by 1 by 1 MPI processor grid 187s Created 400 atoms 187s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 187s create_atoms CPU = 0.000 seconds 187s Setting atom values ... 187s 48 settings made for type/fraction 187s Setting atom values ... 187s 352 settings made for mass 187s Setting atom values ... 187s 48 settings made for mass 187s Setting atom values ... 187s 352 settings made for shape 187s Setting atom values ... 187s 48 settings made for shape 187s Setting atom values ... 187s 400 settings made for quat/random 187s 352 atoms in group spheroid 187s 187s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 187s 187s Your simulation uses code contributions which should be cited: 187s - pair gayberne command: doi:10.1063/1.3058435 187s The log file lists these citations in BibTeX format. 187s 187s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 187s 187s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 187s Neighbor list info ... 187s update: every = 1 steps, delay = 0 steps, check = yes 187s max neighbors/atom: 2000, page size: 100000 187s master list distance cutoff = 4.8 187s ghost atom cutoff = 4.8 187s binsize = 2.4, bins = 59 59 3 187s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 187s (1) pair gayberne, perpetual 187s attributes: half, newton on 187s pair build: half/bin/atomonly/newton 187s stencil: half/bin/2d 187s bin: standard 187s Setting up Verlet run ... 187s Unit style : lj 187s Current step : 0 187s Time step : 0.002 187s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 187s Step c_rot E_pair TotEng Press Volume 187s 0 2.2638298 0 2.394 0.04788 20000 187s 100 1.7507088 0 1.8513745 0.036020794 20558.953 187s 200 2.2704785 0 2.401031 0.046552815 20630.598 187s 300 1.862122 0 1.969194 0.042610426 18485.56 187s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 187s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 187s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 187s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 187s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 187s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 187s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 187s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 187s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 188s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 188s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 188s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 188s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 188s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 188s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 188s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 188s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 188s Loop time of 0.486442 on 2 procs for 2000 steps with 400 atoms 188s 188s Performance: 710465.238 tau/day, 4111.489 timesteps/s, 1.645 Matom-step/s 188s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 188s 188s MPI task timing breakdown: 188s Section | min time | avg time | max time |%varavg| %total 188s --------------------------------------------------------------- 188s Pair | 0.31439 | 0.32964 | 0.34489 | 2.7 | 67.77 188s Neigh | 0.010732 | 0.010856 | 0.01098 | 0.1 | 2.23 188s Comm | 0.024458 | 0.039788 | 0.055119 | 7.7 | 8.18 188s Output | 0.011507 | 0.011582 | 0.011657 | 0.1 | 2.38 188s Modify | 0.0882 | 0.089499 | 0.090798 | 0.4 | 18.40 188s Other | | 0.005073 | | | 1.04 188s 188s Nlocal: 200 ave 227 max 173 min 188s Histogram: 1 0 0 0 0 0 0 0 0 1 188s Nghost: 204 ave 206 max 202 min 188s Histogram: 1 0 0 0 0 0 0 0 0 1 188s Neighs: 1479.5 ave 1784 max 1175 min 188s Histogram: 1 0 0 0 0 0 0 0 0 1 188s 188s Total # of neighbors = 2959 188s Ave neighs/atom = 7.3975 188s Neighbor list builds = 348 188s Dangerous builds = 0 188s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 188s Setting up Verlet run ... 188s Unit style : lj 188s Current step : 2000 188s Time step : 0.002 188s Per MPI rank memory allocation (min/avg/max) = 6.9 | 6.9 | 6.9 Mbytes 188s Step c_rot E_pair TotEng Press Volume 188s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 188s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 188s 2200 1.9590367 -3.3182662 -1.3678333 0.35910433 1149.0282 188s 2300 2.0250309 -3.3891121 -1.3644964 0.46285769 1149.0282 188s 2400 2.085533 -3.4551199 -1.3401904 0.61189864 1149.0282 188s 2500 2.077574 -3.4482359 -1.3340251 1.0190852 1149.0282 188s 2600 2.0840722 -3.4558292 -1.3514352 0.7597702 1149.0282 188s 2700 2.1174248 -3.4915978 -1.3720622 0.82088405 1149.0282 188s 2800 2.0120484 -3.3803498 -1.3351386 1.0472272 1149.0282 188s 2900 2.095772 -3.4692917 -1.3762115 0.6503267 1149.0282 188s 3000 2.005185 -3.3743963 -1.3771538 0.74858505 1149.0282 188s 3100 2.0635196 -3.4375558 -1.3792354 0.72379626 1149.0282 188s 3200 2.0131468 -3.3825952 -1.3703433 1.1087307 1149.0282 188s 3300 2.0467878 -3.4185419 -1.3532024 0.7400243 1149.0282 188s 3400 1.9629403 -3.328306 -1.3871127 0.78865882 1149.0282 188s 3500 2.0576813 -3.4288036 -1.3361687 0.72305492 1149.0282 188s 3600 1.9638286 -3.3256476 -1.3663274 0.83792378 1149.0282 188s 3700 1.9900562 -3.3535764 -1.3259922 0.4389563 1149.0282 189s 3800 1.9016735 -3.2598525 -1.3493967 0.56256005 1149.0282 189s 3900 2.002131 -3.3658151 -1.3768647 0.59924524 1149.0282 189s 4000 1.9750784 -3.33731 -1.3724406 0.70702486 1149.0282 189s Loop time of 0.897835 on 2 procs for 2000 steps with 400 atoms 189s 189s Performance: 384925.972 tau/day, 2227.581 timesteps/s, 891.032 katom-step/s 189s 81.2% CPU use with 2 MPI tasks x 1 OpenMP threads 189s 189s MPI task timing breakdown: 189s Section | min time | avg time | max time |%varavg| %total 189s --------------------------------------------------------------- 189s Pair | 0.37066 | 0.49615 | 0.62164 | 17.8 | 55.26 189s Neigh | 0.0022049 | 0.003488 | 0.004771 | 2.2 | 0.39 189s Comm | 0.14057 | 0.26197 | 0.38338 | 23.7 | 29.18 189s Output | 0.026086 | 0.026164 | 0.026243 | 0.0 | 2.91 189s Modify | 0.067029 | 0.075151 | 0.083273 | 3.0 | 8.37 189s Other | | 0.03491 | | | 3.89 189s 189s Nlocal: 200 ave 242 max 158 min 189s Histogram: 1 0 0 0 0 0 0 0 0 1 189s Nghost: 186 ave 206 max 166 min 189s Histogram: 1 0 0 0 0 0 0 0 0 1 189s Neighs: 1548.5 ave 2045 max 1052 min 189s Histogram: 1 0 0 0 0 0 0 0 0 1 189s 189s Total # of neighbors = 3097 189s Ave neighs/atom = 7.7425 189s Neighbor list builds = 48 189s Dangerous builds = 0 189s Total wall time: 0:00:01 189s LAMMPS (7 Feb 2024 - Update 1) 190s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 190s using 1 OpenMP thread(s) per MPI task 190s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 190s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 190s 1 by 1 by 1 MPI processor grid 190s Created 400 atoms 190s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 190s create_atoms CPU = 0.000 seconds 190s Setting atom values ... 190s 48 settings made for type/fraction 190s Setting atom values ... 190s 352 settings made for mass 190s Setting atom values ... 190s 48 settings made for mass 190s Setting atom values ... 190s 352 settings made for shape 190s Setting atom values ... 190s 48 settings made for shape 190s Setting atom values ... 190s 400 settings made for quat/random 190s 352 atoms in group spheroid 190s 190s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 190s 190s Your simulation uses code contributions which should be cited: 190s - pair gayberne command: doi:10.1063/1.3058435 190s The log file lists these citations in BibTeX format. 190s 190s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 190s 190s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 190s Neighbor list info ... 190s update: every = 1 steps, delay = 0 steps, check = yes 190s max neighbors/atom: 2000, page size: 100000 190s master list distance cutoff = 4.8 190s ghost atom cutoff = 4.8 190s binsize = 2.4, bins = 59 59 3 190s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 190s (1) pair gayberne, perpetual 190s attributes: half, newton on 190s pair build: half/bin/atomonly/newton 190s stencil: half/bin/2d 190s bin: standard 190s Setting up Verlet run ... 190s Unit style : lj 190s Current step : 0 190s Time step : 0.002 190s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 190s Step c_rot E_pair TotEng Press Volume 190s 0 2.2638298 0 2.394 0.04788 20000 190s 100 1.7507088 0 1.8513745 0.036020794 20558.953 190s 200 2.2704785 0 2.401031 0.046552815 20630.598 190s 300 1.862122 0 1.969194 0.042610426 18485.56 190s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 190s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 190s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 190s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 190s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 190s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 190s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 190s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 190s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 190s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 190s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 190s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 190s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 190s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 190s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 190s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 190s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 190s Loop time of 0.883624 on 1 procs for 2000 steps with 400 atoms 190s 190s Performance: 391116.751 tau/day, 2263.407 timesteps/s, 905.363 katom-step/s 190s 98.5% CPU use with 1 MPI tasks x 1 OpenMP threads 190s 190s MPI task timing breakdown: 190s Section | min time | avg time | max time |%varavg| %total 190s --------------------------------------------------------------- 190s Pair | 0.66239 | 0.66239 | 0.66239 | 0.0 | 74.96 191s Neigh | 0.021078 | 0.021078 | 0.021078 | 0.0 | 2.39 191s Comm | 0.0079304 | 0.0079304 | 0.0079304 | 0.0 | 0.90 191s Output | 0.019006 | 0.019006 | 0.019006 | 0.0 | 2.15 191s Modify | 0.16928 | 0.16928 | 0.16928 | 0.0 | 19.16 191s Other | | 0.003937 | | | 0.45 191s 191s Nlocal: 400 ave 400 max 400 min 191s Histogram: 1 0 0 0 0 0 0 0 0 0 191s Nghost: 255 ave 255 max 255 min 191s Histogram: 1 0 0 0 0 0 0 0 0 0 191s Neighs: 2959 ave 2959 max 2959 min 191s Histogram: 1 0 0 0 0 0 0 0 0 0 191s 191s Total # of neighbors = 2959 191s Ave neighs/atom = 7.3975 191s Neighbor list builds = 348 191s Dangerous builds = 0 191s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 191s Setting up Verlet run ... 191s Unit style : lj 191s Current step : 2000 191s Time step : 0.002 191s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 191s Step c_rot E_pair TotEng Press Volume 191s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 191s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 191s 2200 1.9590368 -3.3182663 -1.3678333 0.35910425 1149.0282 191s 2300 2.0250308 -3.3891119 -1.3644964 0.46285779 1149.0282 191s 2400 2.0855331 -3.45512 -1.3401904 0.61189841 1149.0282 191s 2500 2.0775737 -3.4482356 -1.3340258 1.0190836 1149.0282 191s 2600 2.084072 -3.4558289 -1.3514359 0.75976918 1149.0282 191s 2700 2.1174308 -3.4916046 -1.3720664 0.82086811 1149.0282 191s 2800 2.0120441 -3.3803491 -1.3351469 1.047208 1149.0282 191s 2900 2.0957766 -3.4692999 -1.376208 0.65043335 1149.0282 191s 3000 2.00512 -3.3743288 -1.3771585 0.7487656 1149.0282 191s 3100 2.0635277 -3.4376031 -1.3792202 0.72375619 1149.0282 191s 3200 2.0130716 -3.3825107 -1.3702334 1.1098674 1149.0282 191s 3300 2.0463568 -3.4179583 -1.3534773 0.73871011 1149.0282 191s 3400 1.9649348 -3.3304023 -1.3860539 0.77548498 1149.0282 191s 3500 2.0501941 -3.4213612 -1.3373407 0.73278199 1149.0282 191s 3600 1.9881829 -3.3519947 -1.3795107 0.73402726 1149.0282 191s 3700 1.9994085 -3.3655341 -1.3599281 0.3911747 1149.0282 191s 3800 1.963869 -3.3264036 -1.3599099 0.50519594 1149.0282 191s 3900 1.9970107 -3.3624111 -1.3743885 1.0960718 1149.0282 191s 4000 2.0620245 -3.4315752 -1.3998675 0.54966642 1149.0282 191s Loop time of 1.44924 on 1 procs for 2000 steps with 400 atoms 191s 191s Performance: 238469.801 tau/day, 1380.034 timesteps/s, 552.013 katom-step/s 191s 69.1% CPU use with 1 MPI tasks x 1 OpenMP threads 191s 191s MPI task timing breakdown: 191s Section | min time | avg time | max time |%varavg| %total 191s --------------------------------------------------------------- 191s Pair | 1.2038 | 1.2038 | 1.2038 | 0.0 | 83.07 191s Neigh | 0.0065083 | 0.0065083 | 0.0065083 | 0.0 | 0.45 191s Comm | 0.013124 | 0.013124 | 0.013124 | 0.0 | 0.91 191s Output | 0.037701 | 0.037701 | 0.037701 | 0.0 | 2.60 191s Modify | 0.18245 | 0.18245 | 0.18245 | 0.0 | 12.59 191s Other | | 0.005625 | | | 0.39 191s 191s Nlocal: 400 ave 400 max 400 min 191s Histogram: 1 0 0 0 0 0 0 0 0 0 191s Nghost: 240 ave 240 max 240 min 191s Histogram: 1 0 0 0 0 0 0 0 0 0 191s Neighs: 3096 ave 3096 max 3096 min 191s Histogram: 1 0 0 0 0 0 0 0 0 0 191s 191s Total # of neighbors = 3096 191s Ave neighs/atom = 7.74 191s Neighbor list builds = 49 191s Dangerous builds = 0 191s Total wall time: 0:00:02 191s LAMMPS (7 Feb 2024 - Update 1) 191s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 191s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 191s using 1 OpenMP thread(s) per MPI task 191s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 191s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 191s 2 by 1 by 1 MPI processor grid 191s Created 400 atoms 191s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 191s create_atoms CPU = 0.000 seconds 191s Setting atom values ... 191s 48 settings made for type/fraction 191s Setting atom values ... 191s 352 settings made for mass 191s Setting atom values ... 191s 48 settings made for mass 191s Setting atom values ... 191s 352 settings made for shape 191s Setting atom values ... 191s 48 settings made for shape 191s Setting atom values ... 191s 400 settings made for quat/random 191s 352 atoms in group spheroid 191s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 191s Neighbor list info ... 191s update: every = 1 steps, delay = 0 steps, check = yes 191s max neighbors/atom: 2000, page size: 100000 191s master list distance cutoff = 4.8 191s ghost atom cutoff = 4.8 191s binsize = 2.4, bins = 59 59 3 191s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 191s (1) pair resquared, perpetual 191s attributes: half, newton on 191s pair build: half/bin/atomonly/newton 191s stencil: half/bin/2d 191s bin: standard 191s Setting up Verlet run ... 191s Unit style : lj 191s Current step : 0 191s Time step : 0.002 191s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 191s Step c_rot E_pair TotEng Press Volume 191s 0 2.2638298 0 2.394 0.04788 20000 191s 100 1.7507088 0 1.8513745 0.036020794 20558.953 191s 200 2.2704785 0 2.401031 0.046552815 20630.598 191s 300 1.862122 0 1.969194 0.042610426 18485.56 191s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 191s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 191s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 191s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 191s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 192s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 192s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 192s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 192s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 192s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 192s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 192s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 192s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 192s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 192s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 192s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 193s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 193s Loop time of 1.42316 on 2 procs for 2000 steps with 400 atoms 193s 193s Performance: 242839.070 tau/day, 1405.319 timesteps/s, 562.127 katom-step/s 193s 73.3% CPU use with 2 MPI tasks x 1 OpenMP threads 193s 193s MPI task timing breakdown: 193s Section | min time | avg time | max time |%varavg| %total 193s --------------------------------------------------------------- 193s Pair | 0.78863 | 0.82908 | 0.86952 | 4.4 | 58.26 193s Neigh | 0.013485 | 0.014662 | 0.01584 | 1.0 | 1.03 193s Comm | 0.30077 | 0.34258 | 0.38438 | 7.1 | 24.07 193s Output | 0.029663 | 0.030216 | 0.030768 | 0.3 | 2.12 193s Modify | 0.16485 | 0.16883 | 0.17281 | 1.0 | 11.86 193s Other | | 0.0378 | | | 2.66 193s 193s Nlocal: 200 ave 206 max 194 min 193s Histogram: 1 0 0 0 0 0 0 0 0 1 193s Nghost: 166 ave 172 max 160 min 193s Histogram: 1 0 0 0 0 0 0 0 0 1 193s Neighs: 990.5 ave 1028 max 953 min 193s Histogram: 1 0 0 0 0 0 0 0 0 1 193s 193s Total # of neighbors = 1981 193s Ave neighs/atom = 4.9525 193s Neighbor list builds = 410 193s Dangerous builds = 0 193s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 193s Setting up Verlet run ... 193s Unit style : lj 193s Current step : 2000 193s Time step : 0.002 193s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 193s Step c_rot E_pair TotEng Press Volume 193s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 193s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 193s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 193s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 193s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 193s 2500 2.1396456 0.25118294 2.3450649 1.7231479 1625.5704 193s 2600 2.1724989 0.21652796 2.36624 1.5785682 1625.5704 193s 2700 2.1347133 0.2565462 2.3819962 1.7939756 1625.5704 193s 2800 2.2187273 0.16767707 2.3890091 1.3803388 1625.5704 194s 2900 2.2653117 0.11841424 2.358481 1.1423479 1625.5704 194s 3000 2.1965681 0.19125616 2.3687823 1.55014 1625.5704 194s 3100 2.1970501 0.19052613 2.3694703 1.4706426 1625.5704 194s 3200 2.1661439 0.22324214 2.3939177 1.619691 1625.5704 194s 3300 2.1298288 0.26157991 2.3997036 1.8700501 1625.5704 194s 3400 2.1293647 0.26220526 2.373699 1.7332686 1625.5704 194s 3500 2.1835494 0.20483304 2.4031724 1.5471088 1625.5704 194s 3600 2.1875445 0.20049079 2.4159533 1.5995253 1625.5704 194s 3700 2.1186666 0.27351639 2.4141913 1.9057949 1625.5704 194s 3800 2.1752149 0.2136072 2.3067948 1.5705518 1625.5704 195s 3900 2.1976482 0.18993383 2.4017837 1.4844827 1625.5704 195s 4000 2.1788977 0.20960933 2.3437572 1.576965 1625.5704 195s Loop time of 1.99926 on 2 procs for 2000 steps with 400 atoms 195s 195s Performance: 172864.288 tau/day, 1000.372 timesteps/s, 400.149 katom-step/s 195s 81.8% CPU use with 2 MPI tasks x 1 OpenMP threads 195s 195s MPI task timing breakdown: 195s Section | min time | avg time | max time |%varavg| %total 195s --------------------------------------------------------------- 195s Pair | 1.4526 | 1.4646 | 1.4767 | 1.0 | 73.26 195s Neigh | 0.0027118 | 0.0030859 | 0.0034599 | 0.7 | 0.15 195s Comm | 0.37227 | 0.38728 | 0.40229 | 2.4 | 19.37 195s Output | 0.022075 | 0.022181 | 0.022287 | 0.1 | 1.11 195s Modify | 0.07586 | 0.08516 | 0.094459 | 3.2 | 4.26 195s Other | | 0.03691 | | | 1.85 195s 195s Nlocal: 200 ave 207 max 193 min 195s Histogram: 1 0 0 0 0 0 0 0 0 1 195s Nghost: 162.5 ave 165 max 160 min 195s Histogram: 1 0 0 0 0 0 0 0 0 1 195s Neighs: 966 ave 1009 max 923 min 195s Histogram: 1 0 0 0 0 0 0 0 0 1 195s 195s Total # of neighbors = 1932 195s Ave neighs/atom = 4.83 195s Neighbor list builds = 50 195s Dangerous builds = 0 195s Total wall time: 0:00:03 195s LAMMPS (7 Feb 2024 - Update 1) 196s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 196s using 1 OpenMP thread(s) per MPI task 196s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 196s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 196s 1 by 1 by 1 MPI processor grid 196s Created 400 atoms 196s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 196s create_atoms CPU = 0.001 seconds 196s Setting atom values ... 196s 48 settings made for type/fraction 196s Setting atom values ... 196s 352 settings made for mass 196s Setting atom values ... 196s 48 settings made for mass 196s Setting atom values ... 196s 352 settings made for shape 196s Setting atom values ... 196s 48 settings made for shape 196s Setting atom values ... 196s 400 settings made for quat/random 196s 352 atoms in group spheroid 196s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 196s Neighbor list info ... 196s update: every = 1 steps, delay = 0 steps, check = yes 196s max neighbors/atom: 2000, page size: 100000 196s master list distance cutoff = 4.8 196s ghost atom cutoff = 4.8 196s binsize = 2.4, bins = 59 59 3 196s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 196s (1) pair resquared, perpetual 196s attributes: half, newton on 196s pair build: half/bin/atomonly/newton 196s stencil: half/bin/2d 196s bin: standard 196s Setting up Verlet run ... 196s Unit style : lj 196s Current step : 0 196s Time step : 0.002 196s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 196s Step c_rot E_pair TotEng Press Volume 196s 0 2.2638298 0 2.394 0.04788 20000 196s 100 1.7507088 0 1.8513745 0.036020794 20558.953 196s 200 2.2704785 0 2.401031 0.046552815 20630.598 196s 300 1.862122 0 1.969194 0.042610426 18485.56 196s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 196s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 196s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 196s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 196s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 196s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 196s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 196s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 196s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 196s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 196s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 196s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 196s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 196s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 196s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 196s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 196s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 196s Loop time of 1.68 on 1 procs for 2000 steps with 400 atoms 196s 196s Performance: 205714.522 tau/day, 1190.478 timesteps/s, 476.191 katom-step/s 196s 86.3% CPU use with 1 MPI tasks x 1 OpenMP threads 196s 196s MPI task timing breakdown: 196s Section | min time | avg time | max time |%varavg| %total 196s --------------------------------------------------------------- 196s Pair | 1.3716 | 1.3716 | 1.3716 | 0.0 | 81.64 196s Neigh | 0.026591 | 0.026591 | 0.026591 | 0.0 | 1.58 196s Comm | 0.010174 | 0.010174 | 0.010174 | 0.0 | 0.61 196s Output | 0.033449 | 0.033449 | 0.033449 | 0.0 | 1.99 196s Modify | 0.23245 | 0.23245 | 0.23245 | 0.0 | 13.84 196s Other | | 0.005727 | | | 0.34 196s 200s Nlocal: 400 ave 400 max 400 min 200s Histogram: 1 0 0 0 0 0 0 0 0 0 200s Nghost: 214 ave 214 max 214 min 200s Histogram: 1 0 0 0 0 0 0 0 0 0 200s Neighs: 1981 ave 1981 max 1981 min 200s Histogram: 1 0 0 0 0 0 0 0 0 0 200s 200s Total # of neighbors = 1981 200s Ave neighs/atom = 4.9525 200s Neighbor list builds = 410 200s Dangerous builds = 0 200s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 200s Setting up Verlet run ... 200s Unit style : lj 200s Current step : 2000 200s Time step : 0.002 200s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 200s Step c_rot E_pair TotEng Press Volume 200s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 200s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 200s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 200s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 200s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 200s 2500 2.1396456 0.25118295 2.3450649 1.7231479 1625.5704 200s 2600 2.1724989 0.21652796 2.3662399 1.5785682 1625.5704 200s 2700 2.1347133 0.25654622 2.3819962 1.7939757 1625.5704 200s 2800 2.2187273 0.16767709 2.3890091 1.3803389 1625.5704 200s 2900 2.2653117 0.1184142 2.3584809 1.1423477 1625.5704 200s 3000 2.1965682 0.19125607 2.3687823 1.5501394 1625.5704 200s 3100 2.1970503 0.19052592 2.3694702 1.4706415 1625.5704 200s 3200 2.1661438 0.22324217 2.393918 1.619691 1625.5704 200s 3300 2.1298268 0.26158212 2.3997056 1.8700704 1625.5704 200s 3400 2.129366 0.26220387 2.3736989 1.7332623 1625.5704 200s 3500 2.1835467 0.20483593 2.4031735 1.5471227 1625.5704 200s 3600 2.187532 0.20050401 2.4159602 1.5996363 1625.5704 200s 3700 2.1186808 0.2735013 2.4141937 1.9057216 1625.5704 200s 3800 2.1752481 0.21357202 2.3067618 1.5703983 1625.5704 200s 3900 2.1976728 0.18990792 2.4017814 1.4843601 1625.5704 200s 4000 2.1786303 0.20989248 2.3438733 1.578595 1625.5704 200s Loop time of 3.21983 on 1 procs for 2000 steps with 400 atoms 200s 200s Performance: 107334.954 tau/day, 621.151 timesteps/s, 248.461 katom-step/s 200s 78.1% CPU use with 1 MPI tasks x 1 OpenMP threads 200s 200s MPI task timing breakdown: 200s Section | min time | avg time | max time |%varavg| %total 200s --------------------------------------------------------------- 200s Pair | 3.008 | 3.008 | 3.008 | 0.0 | 93.42 200s Neigh | 0.010064 | 0.010064 | 0.010064 | 0.0 | 0.31 200s Comm | 0.01223 | 0.01223 | 0.01223 | 0.0 | 0.38 200s Output | 0.033468 | 0.033468 | 0.033468 | 0.0 | 1.04 200s Modify | 0.14862 | 0.14862 | 0.14862 | 0.0 | 4.62 200s Other | | 0.007417 | | | 0.23 200s 200s Nlocal: 400 ave 400 max 400 min 200s Histogram: 1 0 0 0 0 0 0 0 0 0 200s Nghost: 208 ave 208 max 208 min 200s Histogram: 1 0 0 0 0 0 0 0 0 0 200s Neighs: 1932 ave 1932 max 1932 min 200s Histogram: 1 0 0 0 0 0 0 0 0 0 200s 200s Total # of neighbors = 1932 200s Ave neighs/atom = 4.83 200s Neighbor list builds = 50 200s Dangerous builds = 0 200s Total wall time: 0:00:04 200s run: OK 200s autopkgtest [18:58:34]: test ellipse: -----------------------] 201s autopkgtest [18:58:35]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 201s ellipse PASS 201s autopkgtest [18:58:35]: test flow: preparing testbed 201s Reading package lists... 201s Building dependency tree... 201s Reading state information... 201s Starting pkgProblemResolver with broken count: 0 201s Starting 2 pkgProblemResolver with broken count: 0 201s Done 202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 202s autopkgtest [18:58:36]: test flow: [----------------------- 203s LAMMPS (7 Feb 2024 - Update 1) 203s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 203s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 203s using 1 OpenMP thread(s) per MPI task 203s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 203s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 203s 2 by 1 by 1 MPI processor grid 203s Created 420 atoms 203s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 203s create_atoms CPU = 0.000 seconds 203s 60 atoms in group lower 203s 60 atoms in group upper 203s 120 atoms in group boundary 203s 300 atoms in group flow 203s Setting atom values ... 203s 60 settings made for type 203s Setting atom values ... 203s 60 settings made for type 203s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 203s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 203s Neighbor list info ... 203s update: every = 1 steps, delay = 5 steps, check = yes 203s max neighbors/atom: 2000, page size: 100000 203s master list distance cutoff = 1.42246 203s ghost atom cutoff = 1.42246 203s binsize = 0.71123, bins = 37 32 1 203s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 203s (1) pair lj/cut, perpetual 203s attributes: half, newton on 203s pair build: half/bin/atomonly/newton 203s stencil: half/bin/2d 203s bin: standard 203s Setting up Verlet run ... 203s Unit style : lj 203s Current step : 0 203s Time step : 0.003 203s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 203s Step Temp E_pair E_mol TotEng Press Volume 203s 0 1 0 0 0.71190476 0.52314537 571.54286 203s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 203s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 203s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 203s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 203s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 203s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 203s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 203s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 203s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 203s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 203s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 203s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 203s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 203s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 203s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 203s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 203s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 203s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 203s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 203s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 203s Loop time of 0.258212 on 2 procs for 10000 steps with 420 atoms 203s 203s Performance: 10038251.392 tau/day, 38727.822 timesteps/s, 16.266 Matom-step/s 203s 82.2% CPU use with 2 MPI tasks x 1 OpenMP threads 203s 203s MPI task timing breakdown: 203s Section | min time | avg time | max time |%varavg| %total 203s --------------------------------------------------------------- 203s Pair | 0.052529 | 0.0655 | 0.078472 | 5.1 | 25.37 203s Neigh | 0.024531 | 0.034241 | 0.043951 | 5.2 | 13.26 203s Comm | 0.084326 | 0.10915 | 0.13397 | 7.5 | 42.27 203s Output | 0.00025647 | 0.0004753 | 0.00069413 | 0.0 | 0.18 203s Modify | 0.023676 | 0.02727 | 0.030863 | 2.2 | 10.56 203s Other | | 0.02158 | | | 8.36 203s 203s Nlocal: 210 ave 214 max 206 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s Nghost: 51 ave 52 max 50 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s Neighs: 472 ave 494 max 450 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s 203s Total # of neighbors = 944 203s Ave neighs/atom = 2.247619 203s Neighbor list builds = 994 203s Dangerous builds = 0 203s Total wall time: 0:00:00 203s LAMMPS (7 Feb 2024 - Update 1) 203s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 203s using 1 OpenMP thread(s) per MPI task 203s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 203s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 203s 1 by 1 by 1 MPI processor grid 203s Created 420 atoms 203s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 203s create_atoms CPU = 0.000 seconds 203s 60 atoms in group lower 203s 60 atoms in group upper 203s 120 atoms in group boundary 203s 300 atoms in group flow 203s Setting atom values ... 203s 60 settings made for type 203s Setting atom values ... 203s 60 settings made for type 203s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 203s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 203s Neighbor list info ... 203s update: every = 1 steps, delay = 5 steps, check = yes 203s max neighbors/atom: 2000, page size: 100000 203s master list distance cutoff = 1.42246 203s ghost atom cutoff = 1.42246 203s binsize = 0.71123, bins = 37 32 1 203s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 203s (1) pair lj/cut, perpetual 203s attributes: half, newton on 203s pair build: half/bin/atomonly/newton 203s stencil: half/bin/2d 203s bin: standard 203s Setting up Verlet run ... 203s Unit style : lj 203s Current step : 0 203s Time step : 0.003 203s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 203s Step Temp E_pair E_mol TotEng Press Volume 203s 0 1 0 0 0.71190476 0.52314537 571.54286 203s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 203s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 203s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 203s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 203s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 203s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 203s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 203s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 203s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 203s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 203s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 203s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 203s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 203s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 203s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 203s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 203s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 203s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 203s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 203s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 203s Loop time of 0.206933 on 1 procs for 10000 steps with 420 atoms 203s 203s Performance: 12525768.010 tau/day, 48324.722 timesteps/s, 20.296 Matom-step/s 203s 94.8% CPU use with 1 MPI tasks x 1 OpenMP threads 203s 203s MPI task timing breakdown: 203s Section | min time | avg time | max time |%varavg| %total 203s --------------------------------------------------------------- 203s Pair | 0.10189 | 0.10189 | 0.10189 | 0.0 | 49.24 203s Neigh | 0.045534 | 0.045534 | 0.045534 | 0.0 | 22.00 203s Comm | 0.0055342 | 0.0055342 | 0.0055342 | 0.0 | 2.67 203s Output | 0.00019759 | 0.00019759 | 0.00019759 | 0.0 | 0.10 203s Modify | 0.042357 | 0.042357 | 0.042357 | 0.0 | 20.47 203s Other | | 0.01142 | | | 5.52 203s 203s Nlocal: 420 ave 420 max 420 min 203s Histogram: 1 0 0 0 0 0 0 0 0 0 203s Nghost: 50 ave 50 max 50 min 203s Histogram: 1 0 0 0 0 0 0 0 0 0 203s Neighs: 946 ave 946 max 946 min 203s Histogram: 1 0 0 0 0 0 0 0 0 0 203s 203s Total # of neighbors = 946 203s Ave neighs/atom = 2.252381 203s Neighbor list builds = 979 203s Dangerous builds = 0 203s Total wall time: 0:00:00 203s LAMMPS (7 Feb 2024 - Update 1) 203s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 203s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 203s using 1 OpenMP thread(s) per MPI task 203s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 203s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 203s 2 by 1 by 1 MPI processor grid 203s Created 420 atoms 203s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 203s create_atoms CPU = 0.000 seconds 203s 60 atoms in group lower 203s 60 atoms in group upper 203s 120 atoms in group boundary 203s 300 atoms in group flow 203s Setting atom values ... 203s 60 settings made for type 203s Setting atom values ... 203s 60 settings made for type 203s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 203s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 203s Neighbor list info ... 203s update: every = 1 steps, delay = 5 steps, check = yes 203s max neighbors/atom: 2000, page size: 100000 203s master list distance cutoff = 1.42246 203s ghost atom cutoff = 1.42246 203s binsize = 0.71123, bins = 37 32 1 203s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 203s (1) pair lj/cut, perpetual 203s attributes: half, newton on 203s pair build: half/bin/atomonly/newton 203s stencil: half/bin/2d 203s bin: standard 203s Setting up Verlet run ... 203s Unit style : lj 203s Current step : 0 203s Time step : 0.003 203s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 203s Step Temp E_pair E_mol TotEng Press Volume 203s 0 1 0 0 0.71190476 0.52314537 571.54286 203s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 203s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 203s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 203s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 203s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 203s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 203s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 203s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 204s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 204s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 204s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 204s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 204s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 204s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 204s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 204s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 204s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 204s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 204s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 204s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 204s Loop time of 0.524434 on 2 procs for 10000 steps with 420 atoms 204s 204s Performance: 4942468.230 tau/day, 19068.164 timesteps/s, 8.009 Matom-step/s 204s 74.5% CPU use with 2 MPI tasks x 1 OpenMP threads 204s 204s MPI task timing breakdown: 204s Section | min time | avg time | max time |%varavg| %total 204s --------------------------------------------------------------- 204s Pair | 0.061674 | 0.10467 | 0.14766 | 13.3 | 19.96 204s Neigh | 0.015394 | 0.024182 | 0.03297 | 5.7 | 4.61 204s Comm | 0.14514 | 0.20632 | 0.2675 | 13.5 | 39.34 204s Output | 0.0003813 | 0.001264 | 0.0021466 | 2.5 | 0.24 204s Modify | 0.087163 | 0.11805 | 0.14893 | 9.0 | 22.51 204s Other | | 0.06995 | | | 13.34 204s 204s Nlocal: 210 ave 211 max 209 min 204s Histogram: 1 0 0 0 0 0 0 0 0 1 204s Nghost: 50 ave 51 max 49 min 204s Histogram: 1 0 0 0 0 0 0 0 0 1 204s Neighs: 563.5 ave 569 max 558 min 204s Histogram: 1 0 0 0 0 0 0 0 0 1 204s 204s Total # of neighbors = 1127 204s Ave neighs/atom = 2.6833333 204s Neighbor list builds = 560 204s Dangerous builds = 0 204s Total wall time: 0:00:00 204s LAMMPS (7 Feb 2024 - Update 1) 204s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 204s using 1 OpenMP thread(s) per MPI task 204s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 204s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 204s 1 by 1 by 1 MPI processor grid 204s Created 420 atoms 204s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 204s create_atoms CPU = 0.000 seconds 204s 60 atoms in group lower 204s 60 atoms in group upper 204s 120 atoms in group boundary 204s 300 atoms in group flow 204s Setting atom values ... 204s 60 settings made for type 204s Setting atom values ... 204s 60 settings made for type 204s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 204s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 204s Neighbor list info ... 204s update: every = 1 steps, delay = 5 steps, check = yes 204s max neighbors/atom: 2000, page size: 100000 204s master list distance cutoff = 1.42246 204s ghost atom cutoff = 1.42246 204s binsize = 0.71123, bins = 37 32 1 204s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 204s (1) pair lj/cut, perpetual 204s attributes: half, newton on 204s pair build: half/bin/atomonly/newton 204s stencil: half/bin/2d 204s bin: standard 204s Setting up Verlet run ... 204s Unit style : lj 204s Current step : 0 204s Time step : 0.003 204s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 204s Step Temp E_pair E_mol TotEng Press Volume 204s 0 1 0 0 0.71190476 0.52314537 571.54286 204s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 204s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 204s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 204s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 204s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 204s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 204s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 204s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 204s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 204s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 204s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 204s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 204s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 204s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 204s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 204s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 204s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 204s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 204s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 204s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 204s Loop time of 0.452904 on 1 procs for 10000 steps with 420 atoms 204s 204s Performance: 5723073.130 tau/day, 22079.757 timesteps/s, 9.273 Matom-step/s 204s 51.9% CPU use with 1 MPI tasks x 1 OpenMP threads 204s 204s MPI task timing breakdown: 204s Section | min time | avg time | max time |%varavg| %total 204s --------------------------------------------------------------- 204s Pair | 0.1887 | 0.1887 | 0.1887 | 0.0 | 41.66 204s Neigh | 0.060579 | 0.060579 | 0.060579 | 0.0 | 13.38 204s Comm | 0.016105 | 0.016105 | 0.016105 | 0.0 | 3.56 204s Output | 0.00037397 | 0.00037397 | 0.00037397 | 0.0 | 0.08 204s Modify | 0.15935 | 0.15935 | 0.15935 | 0.0 | 35.18 204s Other | | 0.0278 | | | 6.14 204s 204s Nlocal: 420 ave 420 max 420 min 204s Histogram: 1 0 0 0 0 0 0 0 0 0 204s Nghost: 51 ave 51 max 51 min 204s Histogram: 1 0 0 0 0 0 0 0 0 0 204s Neighs: 1150 ave 1150 max 1150 min 204s Histogram: 1 0 0 0 0 0 0 0 0 0 204s 204s Total # of neighbors = 1150 204s Ave neighs/atom = 2.7380952 204s Neighbor list builds = 563 204s Dangerous builds = 0 204s Total wall time: 0:00:00 204s run: OK 205s autopkgtest [18:58:39]: test flow: -----------------------] 205s flow PASS 205s autopkgtest [18:58:39]: test flow: - - - - - - - - - - results - - - - - - - - - - 206s autopkgtest [18:58:40]: test friction: preparing testbed 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 206s Starting pkgProblemResolver with broken count: 0 206s Starting 2 pkgProblemResolver with broken count: 0 206s Done 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 207s autopkgtest [18:58:41]: test friction: [----------------------- 208s LAMMPS (7 Feb 2024 - Update 1) 208s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 208s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 208s using 1 OpenMP thread(s) per MPI task 208s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 208s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 208s 2 by 1 by 1 MPI processor grid 208s Created 750 atoms 208s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 208s create_atoms CPU = 0.001 seconds 208s Created 750 atoms 208s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 208s create_atoms CPU = 0.001 seconds 208s Created 112 atoms 208s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 208s create_atoms CPU = 0.000 seconds 208s Created 112 atoms 208s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 208s create_atoms CPU = 0.000 seconds 208s 750 atoms in group lo 208s 862 atoms in group lo 208s 750 atoms in group hi 208s 862 atoms in group hi 208s 150 atoms in group lo-fixed 208s 150 atoms in group hi-fixed 208s 300 atoms in group boundary 208s 1424 atoms in group mobile 208s Setting atom values ... 208s 150 settings made for type 208s Setting atom values ... 208s 150 settings made for type 208s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 208s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 208s Neighbor list info ... 208s update: every = 1 steps, delay = 5 steps, check = yes 208s max neighbors/atom: 2000, page size: 100000 208s master list distance cutoff = 2.8 208s ghost atom cutoff = 2.8 208s binsize = 1.4, bins = 41 31 1 208s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 208s (1) pair lj/cut, perpetual 208s attributes: half, newton on 208s pair build: half/bin/atomonly/newton 208s stencil: half/bin/2d 208s bin: standard 208s Setting up Verlet run ... 208s Unit style : lj 208s Current step : 0 208s Time step : 0.0025 208s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 208s Step Temp E_pair E_mol TotEng Press Volume 208s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 208s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 208s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 208s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 209s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 209s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 209s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 209s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 210s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 210s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 210s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 210s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 211s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 211s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 211s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 211s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 211s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 212s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 212s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 212s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 212s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 212s Loop time of 4.61508 on 2 procs for 20000 steps with 1724 atoms 212s 212s Performance: 936060.877 tau/day, 4333.615 timesteps/s, 7.471 Matom-step/s 212s 73.6% CPU use with 2 MPI tasks x 1 OpenMP threads 212s 212s MPI task timing breakdown: 212s Section | min time | avg time | max time |%varavg| %total 212s --------------------------------------------------------------- 212s Pair | 2.307 | 2.4479 | 2.5888 | 9.0 | 53.04 212s Neigh | 0.18545 | 0.21936 | 0.25327 | 7.2 | 4.75 212s Comm | 1.1941 | 1.369 | 1.544 | 15.0 | 29.66 212s Output | 0.00067249 | 0.0023836 | 0.0040946 | 3.5 | 0.05 212s Modify | 0.29901 | 0.30476 | 0.3105 | 1.0 | 6.60 212s Other | | 0.2716 | | | 5.89 212s 212s Nlocal: 862 ave 874 max 850 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Nghost: 165.5 ave 166 max 165 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s Neighs: 7198 ave 7283 max 7113 min 212s Histogram: 1 0 0 0 0 0 0 0 0 1 212s 212s Total # of neighbors = 14396 212s Ave neighs/atom = 8.350348 212s Neighbor list builds = 720 212s Dangerous builds = 0 212s Total wall time: 0:00:04 212s LAMMPS (7 Feb 2024 - Update 1) 217s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 217s using 1 OpenMP thread(s) per MPI task 217s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 217s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 217s 1 by 1 by 1 MPI processor grid 217s Created 750 atoms 217s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 217s create_atoms CPU = 0.000 seconds 217s Created 750 atoms 217s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 217s create_atoms CPU = 0.000 seconds 217s Created 112 atoms 217s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 217s create_atoms CPU = 0.000 seconds 217s Created 112 atoms 217s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 217s create_atoms CPU = 0.000 seconds 217s 750 atoms in group lo 217s 862 atoms in group lo 217s 750 atoms in group hi 217s 862 atoms in group hi 217s 150 atoms in group lo-fixed 217s 150 atoms in group hi-fixed 217s 300 atoms in group boundary 217s 1424 atoms in group mobile 217s Setting atom values ... 217s 150 settings made for type 217s Setting atom values ... 217s 150 settings made for type 217s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 217s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 217s Neighbor list info ... 217s update: every = 1 steps, delay = 5 steps, check = yes 217s max neighbors/atom: 2000, page size: 100000 217s master list distance cutoff = 2.8 217s ghost atom cutoff = 2.8 217s binsize = 1.4, bins = 41 31 1 217s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 217s (1) pair lj/cut, perpetual 217s attributes: half, newton on 217s pair build: half/bin/atomonly/newton 217s stencil: half/bin/2d 217s bin: standard 217s Setting up Verlet run ... 217s Unit style : lj 217s Current step : 0 217s Time step : 0.0025 217s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 217s Step Temp E_pair E_mol TotEng Press Volume 217s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 217s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 217s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 217s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 217s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 217s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 217s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 217s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 217s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 217s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 217s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 217s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 217s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 217s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 217s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 217s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 217s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 217s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 217s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 218s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 218s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 218s Loop time of 5.37702 on 1 procs for 20000 steps with 1724 atoms 218s 218s Performance: 803418.330 tau/day, 3719.529 timesteps/s, 6.412 Matom-step/s 218s 81.3% CPU use with 1 MPI tasks x 1 OpenMP threads 218s 218s MPI task timing breakdown: 218s Section | min time | avg time | max time |%varavg| %total 218s --------------------------------------------------------------- 218s Pair | 4.3505 | 4.3505 | 4.3505 | 0.0 | 80.91 218s Neigh | 0.3647 | 0.3647 | 0.3647 | 0.0 | 6.78 218s Comm | 0.036487 | 0.036487 | 0.036487 | 0.0 | 0.68 218s Output | 0.0017738 | 0.0017738 | 0.0017738 | 0.0 | 0.03 218s Modify | 0.4902 | 0.4902 | 0.4902 | 0.0 | 9.12 218s Other | | 0.1334 | | | 2.48 218s 218s Nlocal: 1724 ave 1724 max 1724 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s Nghost: 145 ave 145 max 145 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s Neighs: 14397 ave 14397 max 14397 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s 218s Total # of neighbors = 14397 218s Ave neighs/atom = 8.3509281 218s Neighbor list builds = 723 218s Dangerous builds = 0 218s Total wall time: 0:00:05 218s run: OK 218s autopkgtest [18:58:52]: test friction: -----------------------] 219s friction PASS 219s autopkgtest [18:58:53]: test friction: - - - - - - - - - - results - - - - - - - - - - 219s autopkgtest [18:58:53]: test hugo: preparing testbed 219s Reading package lists... 220s Building dependency tree... 220s Reading state information... 220s Starting pkgProblemResolver with broken count: 0 220s Starting 2 pkgProblemResolver with broken count: 0 220s Done 220s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 221s autopkgtest [18:58:55]: test hugo: [----------------------- 221s LAMMPS (7 Feb 2024 - Update 1) 221s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 221s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 221s using 1 OpenMP thread(s) per MPI task 221s Lattice spacing in x,y,z = 1.4142135 2 2 221s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 221s 1 by 1 by 2 MPI processor grid 221s Created 1000 atoms 221s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 221s create_atoms CPU = 0.000 seconds 221s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 221s Neighbor list info ... 221s update: every = 1 steps, delay = 0 steps, check = yes 221s max neighbors/atom: 2000, page size: 100000 221s master list distance cutoff = 1.8475372 221s ghost atom cutoff = 1.8475372 221s binsize = 0.92376862, bins = 8 11 11 221s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 221s (1) pair lj/cubic, perpetual 221s attributes: half, newton on 221s pair build: half/bin/atomonly/newton 221s stencil: half/bin/3d 221s bin: standard 221s Setting up cg style minimization ... 221s Unit style : lj 221s Current step : 0 221s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 221s (src/min.cpp:219) 221s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 221s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 221s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 221s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 221s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 221s Loop time of 0.0427336 on 2 procs for 134 steps with 1000 atoms 221s 221s 102.6% CPU use with 2 MPI tasks x 1 OpenMP threads 221s 221s Minimization stats: 221s Stopping criterion = force tolerance 221s Energy initial, next-to-last, final = 221s -6.29375358358574 -6.33442531515467 -6.33442531515467 221s Force two-norm initial, final = 3395.2895 5.526433e-10 221s Force max component initial, final = 1960.2713 3.2059964e-10 221s Final line search alpha, max atom move = 1 3.2059964e-10 221s Iterations, force evaluations = 134 137 221s 221s MPI task timing breakdown: 221s Section | min time | avg time | max time |%varavg| %total 221s --------------------------------------------------------------- 221s Pair | 0.029812 | 0.030917 | 0.032022 | 0.6 | 72.35 221s Neigh | 0.00050168 | 0.00052612 | 0.00055056 | 0.0 | 1.23 221s Comm | 0.0041156 | 0.0052358 | 0.0063559 | 1.5 | 12.25 221s Output | 1.4966e-05 | 1.7422e-05 | 1.9878e-05 | 0.0 | 0.04 221s Modify | 0 | 0 | 0 | 0.0 | 0.00 221s Other | | 0.006037 | | | 14.13 221s 221s Nlocal: 500 ave 550 max 450 min 221s Histogram: 1 0 0 0 0 0 0 0 0 1 221s Nghost: 1214 ave 1264 max 1164 min 221s Histogram: 1 0 0 0 0 0 0 0 0 1 221s Neighs: 10500 ave 11550 max 9450 min 221s Histogram: 1 0 0 0 0 0 0 0 0 1 221s 221s Total # of neighbors = 21000 221s Ave neighs/atom = 21 221s Neighbor list builds = 1 221s Dangerous builds = 0 221s System init for write_restart ... 221s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 221s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 221s using 1 OpenMP thread(s) per MPI task 221s Reading restart file ... 221s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 221s restoring atom style atomic from restart 221s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 221s 1 by 1 by 2 MPI processor grid 221s restoring pair style lj/cubic from restart 222s 1000 atoms 222s read_restart CPU = 0.000 seconds 222s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 222s Neighbor list info ... 222s update: every = 1 steps, delay = 0 steps, check = yes 222s max neighbors/atom: 2000, page size: 100000 222s master list distance cutoff = 1.7475372 222s ghost atom cutoff = 1.7475372 222s binsize = 0.87376862, bins = 8 12 12 222s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 222s (1) pair lj/cubic, perpetual 222s attributes: half, newton on 222s pair build: half/bin/atomonly/newton 222s stencil: half/bin/3d 222s bin: standard 222s Setting up Verlet run ... 222s Unit style : lj 222s Current step : 0 222s Time step : 0.001 222s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 222s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 222s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 222s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 222s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 222s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 223s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 223s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 224s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 224s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 225s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 225s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 226s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 226s Loop time of 4.49209 on 2 procs for 10000 steps with 1000 atoms 226s 226s Performance: 192337.899 tau/day, 2226.133 timesteps/s, 2.226 Matom-step/s 226s 79.9% CPU use with 2 MPI tasks x 1 OpenMP threads 226s 226s MPI task timing breakdown: 226s Section | min time | avg time | max time |%varavg| %total 226s --------------------------------------------------------------- 226s Pair | 2.7365 | 2.809 | 2.8815 | 4.3 | 62.53 226s Neigh | 0.11202 | 0.11453 | 0.11704 | 0.7 | 2.55 226s Comm | 0.95607 | 1.0302 | 1.1044 | 7.3 | 22.93 226s Output | 0.00071083 | 0.0012556 | 0.0018004 | 1.5 | 0.03 226s Modify | 0.46107 | 0.4643 | 0.46753 | 0.5 | 10.34 226s Other | | 0.07278 | | | 1.62 226s 226s Nlocal: 500 ave 509 max 491 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Nghost: 1346.5 ave 1369 max 1324 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Neighs: 10311.5 ave 10391 max 10232 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s 226s Total # of neighbors = 20623 226s Ave neighs/atom = 20.623 226s Neighbor list builds = 205 226s Dangerous builds = 0 226s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 226s using 1 OpenMP thread(s) per MPI task 226s Reading restart file ... 226s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 226s restoring atom style atomic from restart 226s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 226s 1 by 1 by 2 MPI processor grid 226s restoring pair style lj/cubic from restart 226s 1000 atoms 226s read_restart CPU = 0.002 seconds 226s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 226s Neighbor list info ... 226s update: every = 1 steps, delay = 0 steps, check = yes 226s max neighbors/atom: 2000, page size: 100000 226s master list distance cutoff = 1.7475372 226s ghost atom cutoff = 1.7475372 226s binsize = 0.87376862, bins = 8 12 12 226s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 226s (1) pair lj/cubic, perpetual 226s attributes: half, newton on 226s pair build: half/bin/atomonly/newton 226s stencil: half/bin/3d 226s bin: standard 226s Setting up Verlet run ... 226s Unit style : lj 226s Current step : 0 226s Time step : 0.001 226s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 226s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 226s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 226s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 227s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 227s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 228s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 228s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 229s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 229s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 229s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 230s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 230s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 230s Loop time of 4.10795 on 2 procs for 10000 steps with 1000 atoms 230s 230s Performance: 210323.767 tau/day, 2434.303 timesteps/s, 2.434 Matom-step/s 230s 78.8% CPU use with 2 MPI tasks x 1 OpenMP threads 230s 230s MPI task timing breakdown: 230s Section | min time | avg time | max time |%varavg| %total 230s --------------------------------------------------------------- 230s Pair | 2.4651 | 2.5314 | 2.5976 | 4.2 | 61.62 230s Neigh | 0.0046184 | 0.0047695 | 0.0049206 | 0.2 | 0.12 230s Comm | 0.96032 | 1.0246 | 1.0888 | 6.3 | 24.94 230s Output | 0.0020919 | 0.0048511 | 0.0076103 | 4.0 | 0.12 230s Modify | 0.46656 | 0.46835 | 0.47014 | 0.3 | 11.40 230s Other | | 0.07407 | | | 1.80 230s 230s Nlocal: 500 ave 508 max 492 min 230s Histogram: 1 0 0 0 0 0 0 0 0 1 230s Nghost: 1214 ave 1222 max 1206 min 230s Histogram: 1 0 0 0 0 0 0 0 0 1 230s Neighs: 10500 ave 10668 max 10332 min 230s Histogram: 1 0 0 0 0 0 0 0 0 1 230s 230s Total # of neighbors = 21000 230s Ave neighs/atom = 21 230s Neighbor list builds = 10 230s Dangerous builds = 0 230s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 230s using 1 OpenMP thread(s) per MPI task 230s Reading restart file ... 230s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 230s restoring atom style atomic from restart 230s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 230s 1 by 1 by 2 MPI processor grid 230s restoring pair style lj/cubic from restart 230s 1000 atoms 230s read_restart CPU = 0.003 seconds 230s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 230s Neighbor list info ... 230s update: every = 1 steps, delay = 0 steps, check = yes 230s max neighbors/atom: 2000, page size: 100000 230s master list distance cutoff = 1.7475372 230s ghost atom cutoff = 1.7475372 230s binsize = 0.87376862, bins = 8 12 12 230s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 230s (1) pair lj/cubic, perpetual 230s attributes: half, newton on 230s pair build: half/bin/atomonly/newton 230s stencil: half/bin/3d 230s bin: standard 230s Setting up Verlet run ... 230s Unit style : lj 230s Current step : 0 230s Time step : 0.001 230s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 230s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 230s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 231s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 231s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 231s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 232s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 233s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 233s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 234s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 234s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 234s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 235s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 235s Loop time of 4.69829 on 2 procs for 10000 steps with 1000 atoms 235s 235s Performance: 183896.809 tau/day, 2128.435 timesteps/s, 2.128 Matom-step/s 235s 75.5% CPU use with 2 MPI tasks x 1 OpenMP threads 235s 235s MPI task timing breakdown: 235s Section | min time | avg time | max time |%varavg| %total 235s --------------------------------------------------------------- 235s Pair | 2.5732 | 2.6702 | 2.7672 | 5.9 | 56.83 235s Neigh | 0.051413 | 0.057281 | 0.063149 | 2.5 | 1.22 235s Comm | 1.2236 | 1.3191 | 1.4146 | 8.3 | 28.08 235s Output | 0.0046366 | 0.0095459 | 0.014455 | 5.0 | 0.20 235s Modify | 0.51568 | 0.54364 | 0.57161 | 3.8 | 11.57 235s Other | | 0.09846 | | | 2.10 235s 235s Nlocal: 500 ave 510 max 490 min 235s Histogram: 1 0 0 0 0 0 0 0 0 1 235s Nghost: 1216.5 ave 1227 max 1206 min 235s Histogram: 1 0 0 0 0 0 0 0 0 1 235s Neighs: 10311 ave 10520 max 10102 min 235s Histogram: 1 0 0 0 0 0 0 0 0 1 235s 235s Total # of neighbors = 20622 235s Ave neighs/atom = 20.622 235s Neighbor list builds = 95 235s Dangerous builds = 0 235s Total wall time: 0:00:13 235s LAMMPS (7 Feb 2024 - Update 1) 235s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 235s using 1 OpenMP thread(s) per MPI task 235s Lattice spacing in x,y,z = 1.4142135 2 2 235s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 235s 1 by 1 by 1 MPI processor grid 235s Created 1000 atoms 235s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 235s create_atoms CPU = 0.000 seconds 235s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 235s Neighbor list info ... 235s update: every = 1 steps, delay = 0 steps, check = yes 235s max neighbors/atom: 2000, page size: 100000 235s master list distance cutoff = 1.8475372 235s ghost atom cutoff = 1.8475372 235s binsize = 0.92376862, bins = 8 11 11 235s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 235s (1) pair lj/cubic, perpetual 235s attributes: half, newton on 235s pair build: half/bin/atomonly/newton 235s stencil: half/bin/3d 235s bin: standard 235s Setting up cg style minimization ... 235s Unit style : lj 235s Current step : 0 235s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 235s (src/min.cpp:219) 235s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 235s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 235s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 235s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 235s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 235s Loop time of 0.063701 on 1 procs for 134 steps with 1000 atoms 235s 235s 93.6% CPU use with 1 MPI tasks x 1 OpenMP threads 235s 235s Minimization stats: 235s Stopping criterion = force tolerance 235s Energy initial, next-to-last, final = 235s -6.29375358358556 -6.33442531515503 -6.33442531515503 235s Force two-norm initial, final = 3395.2895 5.6047601e-10 235s Force max component initial, final = 1960.2713 3.2666928e-10 235s Final line search alpha, max atom move = 1 3.2666928e-10 235s Iterations, force evaluations = 134 137 235s 235s MPI task timing breakdown: 235s Section | min time | avg time | max time |%varavg| %total 235s --------------------------------------------------------------- 235s Pair | 0.054725 | 0.054725 | 0.054725 | 0.0 | 85.91 235s Neigh | 0.00095031 | 0.00095031 | 0.00095031 | 0.0 | 1.49 235s Comm | 0.00073807 | 0.00073807 | 0.00073807 | 0.0 | 1.16 235s Output | 2.8514e-05 | 2.8514e-05 | 2.8514e-05 | 0.0 | 0.04 235s Modify | 0 | 0 | 0 | 0.0 | 0.00 235s Other | | 0.007259 | | | 11.40 235s 235s Nlocal: 1000 ave 1000 max 1000 min 235s Histogram: 1 0 0 0 0 0 0 0 0 0 235s Nghost: 1724 ave 1724 max 1724 min 235s Histogram: 1 0 0 0 0 0 0 0 0 0 235s Neighs: 21000 ave 21000 max 21000 min 235s Histogram: 1 0 0 0 0 0 0 0 0 0 235s 235s Total # of neighbors = 21000 235s Ave neighs/atom = 21 235s Neighbor list builds = 1 235s Dangerous builds = 0 235s System init for write_restart ... 235s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 235s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 235s using 1 OpenMP thread(s) per MPI task 235s Reading restart file ... 235s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 235s restoring atom style atomic from restart 235s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 235s 1 by 1 by 1 MPI processor grid 235s restoring pair style lj/cubic from restart 235s 1000 atoms 235s read_restart CPU = 0.000 seconds 235s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 235s Neighbor list info ... 235s update: every = 1 steps, delay = 0 steps, check = yes 235s max neighbors/atom: 2000, page size: 100000 235s master list distance cutoff = 1.7475372 235s ghost atom cutoff = 1.7475372 235s binsize = 0.87376862, bins = 8 12 12 235s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 241s (1) pair lj/cubic, perpetual 241s attributes: half, newton on 241s pair build: half/bin/atomonly/newton 241s stencil: half/bin/3d 241s bin: standard 241s Setting up Verlet run ... 241s Unit style : lj 241s Current step : 0 241s Time step : 0.001 241s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 241s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 241s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 241s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 241s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 241s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 241s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 241s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 241s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 241s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 241s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 241s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 241s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 241s Loop time of 6.48835 on 1 procs for 10000 steps with 1000 atoms 241s 241s Performance: 133161.656 tau/day, 1541.223 timesteps/s, 1.541 Matom-step/s 241s 81.4% CPU use with 1 MPI tasks x 1 OpenMP threads 241s 241s MPI task timing breakdown: 241s Section | min time | avg time | max time |%varavg| %total 241s --------------------------------------------------------------- 241s Pair | 5.6129 | 5.6129 | 5.6129 | 0.0 | 86.51 241s Neigh | 0.20831 | 0.20831 | 0.20831 | 0.0 | 3.21 241s Comm | 0.080135 | 0.080135 | 0.080135 | 0.0 | 1.24 241s Output | 0.0016016 | 0.0016016 | 0.0016016 | 0.0 | 0.02 241s Modify | 0.52781 | 0.52781 | 0.52781 | 0.0 | 8.13 241s Other | | 0.05758 | | | 0.89 241s 241s Nlocal: 1000 ave 1000 max 1000 min 241s Histogram: 1 0 0 0 0 0 0 0 0 0 241s Nghost: 1886 ave 1886 max 1886 min 241s Histogram: 1 0 0 0 0 0 0 0 0 0 241s Neighs: 20874 ave 20874 max 20874 min 241s Histogram: 1 0 0 0 0 0 0 0 0 0 241s 241s Total # of neighbors = 20874 241s Ave neighs/atom = 20.874 241s Neighbor list builds = 188 241s Dangerous builds = 0 241s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 241s using 1 OpenMP thread(s) per MPI task 241s Reading restart file ... 241s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 241s restoring atom style atomic from restart 241s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 241s 1 by 1 by 1 MPI processor grid 241s restoring pair style lj/cubic from restart 241s 1000 atoms 241s read_restart CPU = 0.001 seconds 241s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 241s Neighbor list info ... 247s update: every = 1 steps, delay = 0 steps, check = yes 247s max neighbors/atom: 2000, page size: 100000 247s master list distance cutoff = 1.7475372 247s ghost atom cutoff = 1.7475372 247s binsize = 0.87376862, bins = 8 12 12 247s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 247s (1) pair lj/cubic, perpetual 247s attributes: half, newton on 247s pair build: half/bin/atomonly/newton 247s stencil: half/bin/3d 247s bin: standard 247s Setting up Verlet run ... 247s Unit style : lj 247s Current step : 0 247s Time step : 0.001 247s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 247s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 247s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 247s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 247s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 247s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 247s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 247s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 247s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 247s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 247s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 247s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 247s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 247s Loop time of 5.73536 on 1 procs for 10000 steps with 1000 atoms 247s 247s Performance: 150644.479 tau/day, 1743.570 timesteps/s, 1.744 Matom-step/s 247s 80.3% CPU use with 1 MPI tasks x 1 OpenMP threads 247s 247s MPI task timing breakdown: 247s Section | min time | avg time | max time |%varavg| %total 247s --------------------------------------------------------------- 247s Pair | 5.0502 | 5.0502 | 5.0502 | 0.0 | 88.05 247s Neigh | 0.011415 | 0.011415 | 0.011415 | 0.0 | 0.20 247s Comm | 0.078316 | 0.078316 | 0.078316 | 0.0 | 1.37 247s Output | 0.00062611 | 0.00062611 | 0.00062611 | 0.0 | 0.01 247s Modify | 0.55008 | 0.55008 | 0.55008 | 0.0 | 9.59 247s Other | | 0.04477 | | | 0.78 247s 247s Nlocal: 1000 ave 1000 max 1000 min 247s Histogram: 1 0 0 0 0 0 0 0 0 0 247s Nghost: 1724 ave 1724 max 1724 min 247s Histogram: 1 0 0 0 0 0 0 0 0 0 247s Neighs: 21000 ave 21000 max 21000 min 247s Histogram: 1 0 0 0 0 0 0 0 0 0 247s 247s Total # of neighbors = 21000 247s Ave neighs/atom = 21 247s Neighbor list builds = 11 247s Dangerous builds = 0 247s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 247s using 1 OpenMP thread(s) per MPI task 247s Reading restart file ... 247s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 247s restoring atom style atomic from restart 254s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 254s 1 by 1 by 1 MPI processor grid 254s restoring pair style lj/cubic from restart 254s 1000 atoms 254s read_restart CPU = 0.002 seconds 254s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 254s Neighbor list info ... 254s update: every = 1 steps, delay = 0 steps, check = yes 254s max neighbors/atom: 2000, page size: 100000 254s master list distance cutoff = 1.7475372 254s ghost atom cutoff = 1.7475372 254s binsize = 0.87376862, bins = 8 12 12 254s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 254s (1) pair lj/cubic, perpetual 254s attributes: half, newton on 254s pair build: half/bin/atomonly/newton 254s stencil: half/bin/3d 254s bin: standard 254s Setting up Verlet run ... 254s Unit style : lj 254s Current step : 0 254s Time step : 0.001 254s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 254s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 254s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 254s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 254s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 254s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 254s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 254s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 254s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 254s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 254s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 254s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 254s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 254s Loop time of 6.77574 on 1 procs for 10000 steps with 1000 atoms 254s 254s Performance: 127513.679 tau/day, 1475.853 timesteps/s, 1.476 Matom-step/s 254s 70.4% CPU use with 1 MPI tasks x 1 OpenMP threads 254s 254s MPI task timing breakdown: 254s Section | min time | avg time | max time |%varavg| %total 254s --------------------------------------------------------------- 254s Pair | 5.8154 | 5.8154 | 5.8154 | 0.0 | 85.83 254s Neigh | 0.12227 | 0.12227 | 0.12227 | 0.0 | 1.80 254s Comm | 0.10816 | 0.10816 | 0.10816 | 0.0 | 1.60 254s Output | 0.00058663 | 0.00058663 | 0.00058663 | 0.0 | 0.01 254s Modify | 0.66054 | 0.66054 | 0.66054 | 0.0 | 9.75 254s Other | | 0.0688 | | | 1.02 254s 254s Nlocal: 1000 ave 1000 max 1000 min 254s Histogram: 1 0 0 0 0 0 0 0 0 0 254s Nghost: 1724 ave 1724 max 1724 min 254s Histogram: 1 0 0 0 0 0 0 0 0 0 254s Neighs: 20654 ave 20654 max 20654 min 254s Histogram: 1 0 0 0 0 0 0 0 0 0 254s 254s Total # of neighbors = 20654 254s Ave neighs/atom = 20.654 254s Neighbor list builds = 94 254s Dangerous builds = 0 254s Total wall time: 0:00:19 254s run: OK 254s autopkgtest [18:59:28]: test hugo: -----------------------] 255s hugo PASS 255s autopkgtest [18:59:29]: test hugo: - - - - - - - - - - results - - - - - - - - - - 255s autopkgtest [18:59:29]: test command1: preparing testbed 389s autopkgtest [19:01:43]: testbed dpkg architecture: s390x 389s autopkgtest [19:01:43]: testbed apt version: 3.0.0 389s autopkgtest [19:01:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 389s autopkgtest [19:01:43]: testbed release detected to be: questing 390s autopkgtest [19:01:44]: updating testbed package index (apt update) 390s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 391s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 391s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 391s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 391s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [170 kB] 391s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2005 kB] 391s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.1 kB] 391s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [208 kB] 391s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1295 kB] 391s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [8572 B] 392s Fetched 3841 kB in 1s (3038 kB/s) 392s Reading package lists... 393s autopkgtest [19:01:47]: upgrading testbed (apt dist-upgrade and autopurge) 393s Reading package lists... 393s Building dependency tree... 393s Reading state information... 394s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 394s Starting 2 pkgProblemResolver with broken count: 0 394s Done 394s Entering ResolveByKeep 394s 394s Calculating upgrade... 395s The following packages will be upgraded: 395s fwupd htop libftdi1-2 libfwupd3 libnpth0t64 libsensors-config libsensors5 395s liburcu8t64 nano usb.ids 395s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 395s Need to get 2536 kB of archives. 395s After this operation, 3749 kB disk space will be freed. 395s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x libnpth0t64 s390x 1.8-3 [8778 B] 395s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x libsensors-config all 1:3.6.2-2 [6756 B] 395s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x libsensors5 s390x 1:3.6.2-2 [29.2 kB] 395s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x liburcu8t64 s390x 0.15.2-2 [66.3 kB] 395s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x nano s390x 8.4-1 [299 kB] 395s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x usb.ids all 2025.04.01-1 [223 kB] 395s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x fwupd s390x 2.0.8-3 [1548 kB] 395s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libfwupd3 s390x 2.0.8-3 [135 kB] 395s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x htop s390x 3.4.1-4 [189 kB] 395s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libftdi1-2 s390x 1.5-10 [31.4 kB] 396s Fetched 2536 kB in 1s (3564 kB/s) 396s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 396s Preparing to unpack .../libnpth0t64_1.8-3_s390x.deb ... 396s Unpacking libnpth0t64:s390x (1.8-3) over (1.8-2) ... 396s Setting up libnpth0t64:s390x (1.8-3) ... 396s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 396s Preparing to unpack .../0-libsensors-config_1%3a3.6.2-2_all.deb ... 396s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 396s Preparing to unpack .../1-libsensors5_1%3a3.6.2-2_s390x.deb ... 396s Unpacking libsensors5:s390x (1:3.6.2-2) over (1:3.6.0-10) ... 396s Preparing to unpack .../2-liburcu8t64_0.15.2-2_s390x.deb ... 396s Unpacking liburcu8t64:s390x (0.15.2-2) over (0.15.1-1) ... 396s Preparing to unpack .../3-nano_8.4-1_s390x.deb ... 396s Unpacking nano (8.4-1) over (8.3-1) ... 396s Preparing to unpack .../4-usb.ids_2025.04.01-1_all.deb ... 396s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 396s Preparing to unpack .../5-fwupd_2.0.8-3_s390x.deb ... 396s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 396s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 396s Preparing to unpack .../6-libfwupd3_2.0.8-3_s390x.deb ... 396s Unpacking libfwupd3:s390x (2.0.8-3) over (2.0.7-1) ... 396s Preparing to unpack .../7-htop_3.4.1-4_s390x.deb ... 396s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 396s Preparing to unpack .../8-libftdi1-2_1.5-10_s390x.deb ... 396s Unpacking libftdi1-2:s390x (1.5-10) over (1.5-8build1) ... 396s Setting up liburcu8t64:s390x (0.15.2-2) ... 396s Setting up htop (3.4.1-4) ... 396s Setting up libsensors-config (1:3.6.2-2) ... 396s Installing new version of config file /etc/sensors3.conf ... 396s Setting up libfwupd3:s390x (2.0.8-3) ... 396s Setting up libftdi1-2:s390x (1.5-10) ... 396s Setting up usb.ids (2025.04.01-1) ... 396s Setting up libsensors5:s390x (1:3.6.2-2) ... 396s Setting up nano (8.4-1) ... 396s Installing new version of config file /etc/nanorc ... 396s Setting up fwupd (2.0.8-3) ... 397s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 397s fwupd.service is a disabled or a static unit not running, not starting it. 397s Processing triggers for man-db (2.13.0-1) ... 399s Processing triggers for dbus (1.16.2-2ubuntu1) ... 399s Processing triggers for install-info (7.1.1-1) ... 399s Processing triggers for libc-bin (2.41-6ubuntu1) ... 399s Reading package lists... 399s Building dependency tree... 399s Reading state information... 399s Starting pkgProblemResolver with broken count: 0 399s Starting 2 pkgProblemResolver with broken count: 0 399s Done 400s Solving dependencies... 400s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 400s autopkgtest [19:01:54]: rebooting testbed after setup commands that affected boot 425s Reading package lists... 425s Building dependency tree... 425s Reading state information... 425s Starting pkgProblemResolver with broken count: 0 425s Starting 2 pkgProblemResolver with broken count: 0 425s Done 426s The following NEW packages will be installed: 426s autoconf automake autotools-dev cpp-14 cpp-14-s390x-linux-gnu 426s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14 426s gcc-14-s390x-linux-gnu gfortran-14 gfortran-14-s390x-linux-gnu libaec0 426s libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 libdouble-conversion3 426s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 426s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 426s libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 libgcc-14-dev 426s libgfortran-14-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 426s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 426s libhdf5-hl-310 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev 426s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 426s libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev liblammps0t64 426s liblapack3 libltdl-dev libltdl7 libmpc3 libmunge2 libnetcdf22 libnl-3-dev 426s libnl-route-3-dev libnuma-dev libogg0 libopengl0 libopenmpi-dev libopenmpi40 426s libpciaccess0 libpixman-1-0 libpmix-dev libpmix2t64 libpnetcdf6 libproj25 426s librdmacm1t64 libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 426s libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libubsan1 libvoro++1 426s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 426s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 426s libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 426s libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin mpi-default-dev 426s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 426s x11-common zlib1g-dev 426s 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded. 426s Need to get 128 MB of archives. 426s After this operation, 480 MB of additional disk space will be used. 426s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x m4 s390x 1.4.19-7 [259 kB] 426s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x autoconf all 2.72-3ubuntu1 [383 kB] 426s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x autotools-dev all 20220109.1 [44.9 kB] 426s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x automake all 1:1.17-3ubuntu1 [572 kB] 426s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x libisl23 s390x 0.27-1 [704 kB] 427s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 427s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [9572 kB] 427s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x cpp-14 s390x 14.2.0-19ubuntu2 [1024 B] 427s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 427s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 427s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 427s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x libcc1-0 s390x 15-20250404-0ubuntu1 [49.6 kB] 427s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB] 427s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x libitm1 s390x 15-20250404-0ubuntu1 [31.2 kB] 427s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x libasan8 s390x 15-20250404-0ubuntu1 [2966 kB] 428s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libubsan1 s390x 15-20250404-0ubuntu1 [1210 kB] 428s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x libgcc-14-dev s390x 14.2.0-19ubuntu2 [1037 kB] 428s Get:18 http://ftpmaster.internal/ubuntu questing/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [18.7 MB] 430s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x gcc-14 s390x 14.2.0-19ubuntu2 [529 kB] 430s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB] 430s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran-14-dev s390x 14.2.0-19ubuntu2 [653 kB] 430s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [10.3 MB] 431s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-14 s390x 14.2.0-19ubuntu2 [14.2 kB] 431s Get:24 http://ftpmaster.internal/ubuntu questing/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 431s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 431s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 431s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 431s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 431s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 431s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 431s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 431s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB] 431s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 431s Get:34 http://ftpmaster.internal/ubuntu questing/universe s390x libdouble-conversion3 s390x 3.3.1-1 [43.3 kB] 431s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-10 [145 kB] 431s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libevent-extra-2.1-7t64 s390x 2.1.12-stable-10 [64.1 kB] 431s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10 [7870 B] 431s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libevent-openssl-2.1-7t64 s390x 2.1.12-stable-10 [14.9 kB] 431s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x libevent-dev s390x 2.1.12-stable-10 [276 kB] 431s Get:40 http://ftpmaster.internal/ubuntu questing/main s390x librdmacm1t64 s390x 56.0-4ubuntu1 [74.0 kB] 431s Get:41 http://ftpmaster.internal/ubuntu questing/universe s390x libfabric1 s390x 1.17.0-3.1 [558 kB] 432s Get:42 http://ftpmaster.internal/ubuntu questing/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build1 [511 kB] 432s Get:43 http://ftpmaster.internal/ubuntu questing/main s390x libwayland-server0 s390x 1.23.1-3 [37.3 kB] 432s Get:44 http://ftpmaster.internal/ubuntu questing/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 432s Get:45 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 432s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 432s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 432s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 432s Get:49 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 432s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 432s Get:51 http://ftpmaster.internal/ubuntu questing/main s390x mesa-libgallium s390x 25.0.3-1ubuntu2 [8057 kB] 433s Get:52 http://ftpmaster.internal/ubuntu questing/main s390x libgbm1 s390x 25.0.3-1ubuntu2 [34.5 kB] 433s Get:53 http://ftpmaster.internal/ubuntu questing/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 433s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libgl1-mesa-dri s390x 25.0.3-1ubuntu2 [35.5 kB] 433s Get:55 http://ftpmaster.internal/ubuntu questing/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 433s Get:56 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 433s Get:57 http://ftpmaster.internal/ubuntu questing/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 433s Get:58 http://ftpmaster.internal/ubuntu questing/main s390x libglx-mesa0 s390x 25.0.3-1ubuntu2 [161 kB] 433s Get:59 http://ftpmaster.internal/ubuntu questing/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 433s Get:60 http://ftpmaster.internal/ubuntu questing/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 433s Get:61 http://ftpmaster.internal/ubuntu questing/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 433s Get:62 http://ftpmaster.internal/ubuntu questing/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 433s Get:63 http://ftpmaster.internal/ubuntu questing/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 433s Get:64 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 433s Get:65 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 433s Get:66 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc15 s390x 2.12.0-1 [176 kB] 433s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 433s Get:68 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 433s Get:69 http://ftpmaster.internal/ubuntu questing/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 433s Get:70 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 433s Get:71 http://ftpmaster.internal/ubuntu questing/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 433s Get:72 http://ftpmaster.internal/ubuntu questing/universe s390x libkim-api2 s390x 2.3.0-1ubuntu1 [602 kB] 433s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 434s Get:74 http://ftpmaster.internal/ubuntu questing/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 434s Get:75 http://ftpmaster.internal/ubuntu questing/universe s390x libmunge2 s390x 0.5.16-1 [15.2 kB] 434s Get:76 http://ftpmaster.internal/ubuntu questing/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB] 434s Get:77 http://ftpmaster.internal/ubuntu questing/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 434s Get:78 http://ftpmaster.internal/ubuntu questing/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1build1 [41.1 kB] 434s Get:79 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc-plugins s390x 2.12.0-1 [16.1 kB] 434s Get:80 http://ftpmaster.internal/ubuntu questing/universe s390x libpmix2t64 s390x 5.0.6-5 [715 kB] 434s Get:81 http://ftpmaster.internal/ubuntu questing/universe s390x libopenmpi40 s390x 5.0.7-1 [2196 kB] 434s Get:82 http://ftpmaster.internal/ubuntu questing/universe s390x libpnetcdf6 s390x 1.14.0-2 [1172 kB] 435s Get:83 http://ftpmaster.internal/ubuntu questing/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 435s Get:84 http://ftpmaster.internal/ubuntu questing/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 435s Get:85 http://ftpmaster.internal/ubuntu questing/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 435s Get:86 http://ftpmaster.internal/ubuntu questing/universe s390x proj-data all 9.5.1-1 [7924 kB] 436s Get:87 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 436s Get:88 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 436s Get:89 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 436s Get:90 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.7.0-3ubuntu1 [219 kB] 436s Get:91 http://ftpmaster.internal/ubuntu questing/universe s390x libproj25 s390x 9.5.1-1 [1452 kB] 436s Get:92 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbbind-2-5 s390x 2022.0.0-2 [15.3 kB] 436s Get:93 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbmalloc2 s390x 2022.0.0-2 [57.7 kB] 436s Get:94 http://ftpmaster.internal/ubuntu questing/universe s390x libtbb12 s390x 2022.0.0-2 [99.9 kB] 436s Get:95 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 437s Get:96 http://ftpmaster.internal/ubuntu questing/main s390x libtheoradec1 s390x 1.2.0~alpha1+dfsg-6 [68.6 kB] 437s Get:97 http://ftpmaster.internal/ubuntu questing/main s390x libtheoraenc1 s390x 1.2.0~alpha1+dfsg-6 [142 kB] 437s Get:98 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 437s Get:99 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 437s Get:100 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 437s Get:101 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 437s Get:102 http://ftpmaster.internal/ubuntu questing/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-4ubuntu1 [27.1 MB] 441s Get:103 http://ftpmaster.internal/ubuntu questing/universe s390x liblammps0t64 s390x 20240207+dfsg-3build3 [7859 kB] 441s Get:104 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-common all 5.0.7-1 [97.9 kB] 441s Get:105 http://ftpmaster.internal/ubuntu questing/main s390x libnl-3-dev s390x 3.7.0-2 [103 kB] 441s Get:106 http://ftpmaster.internal/ubuntu questing/main s390x libnl-route-3-dev s390x 3.7.0-2 [214 kB] 441s Get:107 http://ftpmaster.internal/ubuntu questing/main s390x libibverbs-dev s390x 56.0-4ubuntu1 [717 kB] 441s Get:108 http://ftpmaster.internal/ubuntu questing/main s390x libnuma-dev s390x 2.0.18-1build1 [38.9 kB] 441s Get:109 http://ftpmaster.internal/ubuntu questing/main s390x libltdl7 s390x 2.5.4-4 [43.8 kB] 441s Get:110 http://ftpmaster.internal/ubuntu questing/main s390x libltdl-dev s390x 2.5.4-4 [173 kB] 441s Get:111 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc-dev s390x 2.12.0-1 [275 kB] 441s Get:112 http://ftpmaster.internal/ubuntu questing/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 441s Get:113 http://ftpmaster.internal/ubuntu questing/universe s390x libpmix-dev s390x 5.0.6-5 [4058 kB] 442s Get:114 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-bin s390x 5.0.7-1 [200 kB] 442s Get:115 http://ftpmaster.internal/ubuntu questing/universe s390x libopenmpi-dev s390x 5.0.7-1 [1023 kB] 442s Get:116 http://ftpmaster.internal/ubuntu questing/universe s390x mpi-default-dev s390x 1.18 [3324 B] 442s Get:117 http://ftpmaster.internal/ubuntu questing/universe s390x liblammps-dev s390x 20240207+dfsg-3build3 [112 kB] 442s Get:118 http://ftpmaster.internal/ubuntu questing/universe s390x mpi-default-bin s390x 1.18 [2510 B] 442s Get:119 http://ftpmaster.internal/ubuntu questing/universe s390x python3-lammps s390x 20240207+dfsg-3build3 [70.5 kB] 442s Fetched 128 MB in 16s (8119 kB/s) 442s Selecting previously unselected package m4. 442s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81470 files and directories currently installed.) 442s Preparing to unpack .../000-m4_1.4.19-7_s390x.deb ... 442s Unpacking m4 (1.4.19-7) ... 442s Selecting previously unselected package autoconf. 442s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 442s Unpacking autoconf (2.72-3ubuntu1) ... 442s Selecting previously unselected package autotools-dev. 442s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 442s Unpacking autotools-dev (20220109.1) ... 442s Selecting previously unselected package automake. 442s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 442s Unpacking automake (1:1.17-3ubuntu1) ... 442s Selecting previously unselected package libisl23:s390x. 442s Preparing to unpack .../004-libisl23_0.27-1_s390x.deb ... 442s Unpacking libisl23:s390x (0.27-1) ... 442s Selecting previously unselected package libmpc3:s390x. 442s Preparing to unpack .../005-libmpc3_1.3.1-1build2_s390x.deb ... 442s Unpacking libmpc3:s390x (1.3.1-1build2) ... 442s Selecting previously unselected package cpp-14-s390x-linux-gnu. 442s Preparing to unpack .../006-cpp-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 442s Unpacking cpp-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 443s Selecting previously unselected package cpp-14. 443s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_s390x.deb ... 443s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 443s Selecting previously unselected package fonts-dejavu-mono. 443s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 443s Unpacking fonts-dejavu-mono (2.37-8) ... 443s Selecting previously unselected package fonts-dejavu-core. 443s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 443s Unpacking fonts-dejavu-core (2.37-8) ... 443s Selecting previously unselected package fontconfig-config. 443s Preparing to unpack .../010-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 443s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 443s Selecting previously unselected package libcc1-0:s390x. 443s Preparing to unpack .../011-libcc1-0_15-20250404-0ubuntu1_s390x.deb ... 443s Unpacking libcc1-0:s390x (15-20250404-0ubuntu1) ... 443s Selecting previously unselected package libgomp1:s390x. 443s Preparing to unpack .../012-libgomp1_15-20250404-0ubuntu1_s390x.deb ... 443s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ... 443s Selecting previously unselected package libitm1:s390x. 443s Preparing to unpack .../013-libitm1_15-20250404-0ubuntu1_s390x.deb ... 443s Unpacking libitm1:s390x (15-20250404-0ubuntu1) ... 443s Selecting previously unselected package libasan8:s390x. 443s Preparing to unpack .../014-libasan8_15-20250404-0ubuntu1_s390x.deb ... 443s Unpacking libasan8:s390x (15-20250404-0ubuntu1) ... 443s Selecting previously unselected package libubsan1:s390x. 443s Preparing to unpack .../015-libubsan1_15-20250404-0ubuntu1_s390x.deb ... 443s Unpacking libubsan1:s390x (15-20250404-0ubuntu1) ... 443s Selecting previously unselected package libgcc-14-dev:s390x. 443s Preparing to unpack .../016-libgcc-14-dev_14.2.0-19ubuntu2_s390x.deb ... 443s Unpacking libgcc-14-dev:s390x (14.2.0-19ubuntu2) ... 443s Selecting previously unselected package gcc-14-s390x-linux-gnu. 443s Preparing to unpack .../017-gcc-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 443s Unpacking gcc-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 443s Selecting previously unselected package gcc-14. 443s Preparing to unpack .../018-gcc-14_14.2.0-19ubuntu2_s390x.deb ... 443s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 443s Selecting previously unselected package libgfortran5:s390x. 443s Preparing to unpack .../019-libgfortran5_15-20250404-0ubuntu1_s390x.deb ... 443s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ... 443s Selecting previously unselected package libgfortran-14-dev:s390x. 443s Preparing to unpack .../020-libgfortran-14-dev_14.2.0-19ubuntu2_s390x.deb ... 443s Unpacking libgfortran-14-dev:s390x (14.2.0-19ubuntu2) ... 443s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 443s Preparing to unpack .../021-gfortran-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 443s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 443s Selecting previously unselected package gfortran-14. 443s Preparing to unpack .../022-gfortran-14_14.2.0-19ubuntu2_s390x.deb ... 443s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 443s Selecting previously unselected package libaec0:s390x. 443s Preparing to unpack .../023-libaec0_1.1.3-1_s390x.deb ... 443s Unpacking libaec0:s390x (1.1.3-1) ... 443s Selecting previously unselected package libblas3:s390x. 443s Preparing to unpack .../024-libblas3_3.12.1-2_s390x.deb ... 443s Unpacking libblas3:s390x (3.12.1-2) ... 443s Selecting previously unselected package libfreetype6:s390x. 443s Preparing to unpack .../025-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 443s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 443s Selecting previously unselected package libfontconfig1:s390x. 443s Preparing to unpack .../026-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 443s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 443s Selecting previously unselected package libpixman-1-0:s390x. 443s Preparing to unpack .../027-libpixman-1-0_0.44.0-3_s390x.deb ... 443s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 443s Selecting previously unselected package libxcb-render0:s390x. 444s Preparing to unpack .../028-libxcb-render0_1.17.0-2_s390x.deb ... 444s Unpacking libxcb-render0:s390x (1.17.0-2) ... 444s Selecting previously unselected package libxcb-shm0:s390x. 444s Preparing to unpack .../029-libxcb-shm0_1.17.0-2_s390x.deb ... 444s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 444s Selecting previously unselected package libxrender1:s390x. 444s Preparing to unpack .../030-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 444s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 444s Selecting previously unselected package libcairo2:s390x. 444s Preparing to unpack .../031-libcairo2_1.18.4-1_s390x.deb ... 444s Unpacking libcairo2:s390x (1.18.4-1) ... 444s Selecting previously unselected package libdeflate0:s390x. 444s Preparing to unpack .../032-libdeflate0_1.23-1_s390x.deb ... 444s Unpacking libdeflate0:s390x (1.23-1) ... 444s Selecting previously unselected package libdouble-conversion3:s390x. 444s Preparing to unpack .../033-libdouble-conversion3_3.3.1-1_s390x.deb ... 444s Unpacking libdouble-conversion3:s390x (3.3.1-1) ... 444s Selecting previously unselected package libevent-2.1-7t64:s390x. 444s Preparing to unpack .../034-libevent-2.1-7t64_2.1.12-stable-10_s390x.deb ... 444s Unpacking libevent-2.1-7t64:s390x (2.1.12-stable-10) ... 444s Selecting previously unselected package libevent-extra-2.1-7t64:s390x. 444s Preparing to unpack .../035-libevent-extra-2.1-7t64_2.1.12-stable-10_s390x.deb ... 444s Unpacking libevent-extra-2.1-7t64:s390x (2.1.12-stable-10) ... 444s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 444s Preparing to unpack .../036-libevent-pthreads-2.1-7t64_2.1.12-stable-10_s390x.deb ... 444s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 444s Selecting previously unselected package libevent-openssl-2.1-7t64:s390x. 444s Preparing to unpack .../037-libevent-openssl-2.1-7t64_2.1.12-stable-10_s390x.deb ... 444s Unpacking libevent-openssl-2.1-7t64:s390x (2.1.12-stable-10) ... 444s Selecting previously unselected package libevent-dev. 444s Preparing to unpack .../038-libevent-dev_2.1.12-stable-10_s390x.deb ... 444s Unpacking libevent-dev (2.1.12-stable-10) ... 444s Selecting previously unselected package librdmacm1t64:s390x. 444s Preparing to unpack .../039-librdmacm1t64_56.0-4ubuntu1_s390x.deb ... 444s Unpacking librdmacm1t64:s390x (56.0-4ubuntu1) ... 444s Selecting previously unselected package libfabric1:s390x. 444s Preparing to unpack .../040-libfabric1_1.17.0-3.1_s390x.deb ... 444s Unpacking libfabric1:s390x (1.17.0-3.1) ... 444s Selecting previously unselected package libfftw3-double3:s390x. 444s Preparing to unpack .../041-libfftw3-double3_3.3.10-2fakesync1build1_s390x.deb ... 444s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 444s Selecting previously unselected package libwayland-server0:s390x. 444s Preparing to unpack .../042-libwayland-server0_1.23.1-3_s390x.deb ... 444s Unpacking libwayland-server0:s390x (1.23.1-3) ... 444s Selecting previously unselected package libx11-xcb1:s390x. 444s Preparing to unpack .../043-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 444s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 444s Selecting previously unselected package libxcb-dri3-0:s390x. 444s Preparing to unpack .../044-libxcb-dri3-0_1.17.0-2_s390x.deb ... 444s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 444s Selecting previously unselected package libxcb-present0:s390x. 444s Preparing to unpack .../045-libxcb-present0_1.17.0-2_s390x.deb ... 444s Unpacking libxcb-present0:s390x (1.17.0-2) ... 444s Selecting previously unselected package libxcb-randr0:s390x. 444s Preparing to unpack .../046-libxcb-randr0_1.17.0-2_s390x.deb ... 444s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 444s Selecting previously unselected package libxcb-sync1:s390x. 444s Preparing to unpack .../047-libxcb-sync1_1.17.0-2_s390x.deb ... 444s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 444s Selecting previously unselected package libxcb-xfixes0:s390x. 444s Preparing to unpack .../048-libxcb-xfixes0_1.17.0-2_s390x.deb ... 444s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 444s Selecting previously unselected package libxshmfence1:s390x. 444s Preparing to unpack .../049-libxshmfence1_1.3-1build5_s390x.deb ... 444s Unpacking libxshmfence1:s390x (1.3-1build5) ... 444s Selecting previously unselected package mesa-libgallium:s390x. 444s Preparing to unpack .../050-mesa-libgallium_25.0.3-1ubuntu2_s390x.deb ... 444s Unpacking mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 444s Selecting previously unselected package libgbm1:s390x. 444s Preparing to unpack .../051-libgbm1_25.0.3-1ubuntu2_s390x.deb ... 444s Unpacking libgbm1:s390x (25.0.3-1ubuntu2) ... 444s Selecting previously unselected package libvulkan1:s390x. 444s Preparing to unpack .../052-libvulkan1_1.4.304.0-1_s390x.deb ... 444s Unpacking libvulkan1:s390x (1.4.304.0-1) ... 444s Selecting previously unselected package libgl1-mesa-dri:s390x. 444s Preparing to unpack .../053-libgl1-mesa-dri_25.0.3-1ubuntu2_s390x.deb ... 444s Unpacking libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 444s Selecting previously unselected package libglvnd0:s390x. 444s Preparing to unpack .../054-libglvnd0_1.7.0-1build1_s390x.deb ... 444s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 444s Selecting previously unselected package libxcb-glx0:s390x. 444s Preparing to unpack .../055-libxcb-glx0_1.17.0-2_s390x.deb ... 444s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 444s Selecting previously unselected package libxxf86vm1:s390x. 444s Preparing to unpack .../056-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 444s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 444s Selecting previously unselected package libglx-mesa0:s390x. 444s Preparing to unpack .../057-libglx-mesa0_25.0.3-1ubuntu2_s390x.deb ... 444s Unpacking libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 444s Selecting previously unselected package libglx0:s390x. 444s Preparing to unpack .../058-libglx0_1.7.0-1build1_s390x.deb ... 444s Unpacking libglx0:s390x (1.7.0-1build1) ... 444s Selecting previously unselected package libgl1:s390x. 444s Preparing to unpack .../059-libgl1_1.7.0-1build1_s390x.deb ... 444s Unpacking libgl1:s390x (1.7.0-1build1) ... 444s Selecting previously unselected package libgl2ps1.4. 444s Preparing to unpack .../060-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 444s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 444s Selecting previously unselected package libglew2.2:s390x. 444s Preparing to unpack .../061-libglew2.2_2.2.0-4build1_s390x.deb ... 444s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 444s Selecting previously unselected package libsz2:s390x. 444s Preparing to unpack .../062-libsz2_1.1.3-1_s390x.deb ... 444s Unpacking libsz2:s390x (1.1.3-1) ... 444s Selecting previously unselected package libhdf5-310:s390x. 444s Preparing to unpack .../063-libhdf5-310_1.14.5+repack-3_s390x.deb ... 444s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 444s Selecting previously unselected package libhdf5-hl-310:s390x. 444s Preparing to unpack .../064-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 444s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 444s Selecting previously unselected package libhwloc15:s390x. 444s Preparing to unpack .../065-libhwloc15_2.12.0-1_s390x.deb ... 444s Unpacking libhwloc15:s390x (2.12.0-1) ... 444s Selecting previously unselected package libjpeg-turbo8:s390x. 444s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 444s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 444s Selecting previously unselected package libjpeg8:s390x. 444s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_s390x.deb ... 444s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 444s Selecting previously unselected package libjs-jquery. 444s Preparing to unpack .../068-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 444s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 444s Selecting previously unselected package libjs-jquery-ui. 444s Preparing to unpack .../069-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 444s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 444s Selecting previously unselected package libjsoncpp26:s390x. 444s Preparing to unpack .../070-libjsoncpp26_1.9.6-3_s390x.deb ... 444s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 444s Selecting previously unselected package libkim-api2:s390x. 444s Preparing to unpack .../071-libkim-api2_2.3.0-1ubuntu1_s390x.deb ... 444s Unpacking libkim-api2:s390x (2.3.0-1ubuntu1) ... 444s Selecting previously unselected package liblapack3:s390x. 444s Preparing to unpack .../072-liblapack3_3.12.1-2_s390x.deb ... 444s Unpacking liblapack3:s390x (3.12.1-2) ... 444s Selecting previously unselected package libnetcdf22:s390x. 444s Preparing to unpack .../073-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 444s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 444s Selecting previously unselected package libmunge2:s390x. 444s Preparing to unpack .../074-libmunge2_0.5.16-1_s390x.deb ... 444s Unpacking libmunge2:s390x (0.5.16-1) ... 444s Selecting previously unselected package libpciaccess0:s390x. 444s Preparing to unpack .../075-libpciaccess0_0.17-3build1_s390x.deb ... 444s Unpacking libpciaccess0:s390x (0.17-3build1) ... 444s Selecting previously unselected package libxnvctrl0:s390x. 444s Preparing to unpack .../076-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 444s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 444s Selecting previously unselected package ocl-icd-libopencl1:s390x. 444s Preparing to unpack .../077-ocl-icd-libopencl1_2.3.2-1build1_s390x.deb ... 444s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 444s Selecting previously unselected package libhwloc-plugins:s390x. 444s Preparing to unpack .../078-libhwloc-plugins_2.12.0-1_s390x.deb ... 444s Unpacking libhwloc-plugins:s390x (2.12.0-1) ... 445s Selecting previously unselected package libpmix2t64:s390x. 445s Preparing to unpack .../079-libpmix2t64_5.0.6-5_s390x.deb ... 445s Unpacking libpmix2t64:s390x (5.0.6-5) ... 445s Selecting previously unselected package libopenmpi40:s390x. 445s Preparing to unpack .../080-libopenmpi40_5.0.7-1_s390x.deb ... 445s Unpacking libopenmpi40:s390x (5.0.7-1) ... 445s Selecting previously unselected package libpnetcdf6:s390x. 445s Preparing to unpack .../081-libpnetcdf6_1.14.0-2_s390x.deb ... 445s Unpacking libpnetcdf6:s390x (1.14.0-2) ... 445s Selecting previously unselected package libvoro++1. 445s Preparing to unpack .../082-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 445s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 445s Selecting previously unselected package libogg0:s390x. 445s Preparing to unpack .../083-libogg0_1.3.5-3build1_s390x.deb ... 445s Unpacking libogg0:s390x (1.3.5-3build1) ... 445s Selecting previously unselected package libopengl0:s390x. 445s Preparing to unpack .../084-libopengl0_1.7.0-1build1_s390x.deb ... 445s Unpacking libopengl0:s390x (1.7.0-1build1) ... 445s Selecting previously unselected package proj-data. 445s Preparing to unpack .../085-proj-data_9.5.1-1_all.deb ... 445s Unpacking proj-data (9.5.1-1) ... 445s Selecting previously unselected package libjbig0:s390x. 445s Preparing to unpack .../086-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 445s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 445s Selecting previously unselected package libsharpyuv0:s390x. 445s Preparing to unpack .../087-libsharpyuv0_1.5.0-0.1_s390x.deb ... 445s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 445s Selecting previously unselected package libwebp7:s390x. 445s Preparing to unpack .../088-libwebp7_1.5.0-0.1_s390x.deb ... 445s Unpacking libwebp7:s390x (1.5.0-0.1) ... 445s Selecting previously unselected package libtiff6:s390x. 445s Preparing to unpack .../089-libtiff6_4.7.0-3ubuntu1_s390x.deb ... 445s Unpacking libtiff6:s390x (4.7.0-3ubuntu1) ... 445s Selecting previously unselected package libproj25:s390x. 445s Preparing to unpack .../090-libproj25_9.5.1-1_s390x.deb ... 445s Unpacking libproj25:s390x (9.5.1-1) ... 445s Selecting previously unselected package libtbbbind-2-5:s390x. 445s Preparing to unpack .../091-libtbbbind-2-5_2022.0.0-2_s390x.deb ... 445s Unpacking libtbbbind-2-5:s390x (2022.0.0-2) ... 445s Selecting previously unselected package libtbbmalloc2:s390x. 445s Preparing to unpack .../092-libtbbmalloc2_2022.0.0-2_s390x.deb ... 445s Unpacking libtbbmalloc2:s390x (2022.0.0-2) ... 445s Selecting previously unselected package libtbb12:s390x. 445s Preparing to unpack .../093-libtbb12_2022.0.0-2_s390x.deb ... 445s Unpacking libtbb12:s390x (2022.0.0-2) ... 445s Selecting previously unselected package libtcl8.6:s390x. 445s Preparing to unpack .../094-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 445s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 445s Selecting previously unselected package libtheoradec1:s390x. 445s Preparing to unpack .../095-libtheoradec1_1.2.0~alpha1+dfsg-6_s390x.deb ... 445s Unpacking libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 445s Selecting previously unselected package libtheoraenc1:s390x. 445s Preparing to unpack .../096-libtheoraenc1_1.2.0~alpha1+dfsg-6_s390x.deb ... 445s Unpacking libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 445s Selecting previously unselected package libxft2:s390x. 445s Preparing to unpack .../097-libxft2_2.3.6-1build1_s390x.deb ... 445s Unpacking libxft2:s390x (2.3.6-1build1) ... 445s Selecting previously unselected package x11-common. 445s Preparing to unpack .../098-x11-common_1%3a7.7+23ubuntu4_all.deb ... 445s Unpacking x11-common (1:7.7+23ubuntu4) ... 445s Selecting previously unselected package libxss1:s390x. 445s Preparing to unpack .../099-libxss1_1%3a1.2.3-1build3_s390x.deb ... 445s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 445s Selecting previously unselected package libtk8.6:s390x. 445s Preparing to unpack .../100-libtk8.6_8.6.16-1_s390x.deb ... 445s Unpacking libtk8.6:s390x (8.6.16-1) ... 445s Selecting previously unselected package libvtk9.3:s390x. 445s Preparing to unpack .../101-libvtk9.3_9.3.0+dfsg1-4ubuntu1_s390x.deb ... 445s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 446s Selecting previously unselected package liblammps0t64:s390x. 446s Preparing to unpack .../102-liblammps0t64_20240207+dfsg-3build3_s390x.deb ... 446s Unpacking liblammps0t64:s390x (20240207+dfsg-3build3) ... 446s Selecting previously unselected package openmpi-common. 446s Preparing to unpack .../103-openmpi-common_5.0.7-1_all.deb ... 446s Unpacking openmpi-common (5.0.7-1) ... 446s Selecting previously unselected package libnl-3-dev:s390x. 446s Preparing to unpack .../104-libnl-3-dev_3.7.0-2_s390x.deb ... 446s Unpacking libnl-3-dev:s390x (3.7.0-2) ... 446s Selecting previously unselected package libnl-route-3-dev:s390x. 446s Preparing to unpack .../105-libnl-route-3-dev_3.7.0-2_s390x.deb ... 446s Unpacking libnl-route-3-dev:s390x (3.7.0-2) ... 446s Selecting previously unselected package libibverbs-dev:s390x. 446s Preparing to unpack .../106-libibverbs-dev_56.0-4ubuntu1_s390x.deb ... 446s Unpacking libibverbs-dev:s390x (56.0-4ubuntu1) ... 446s Selecting previously unselected package libnuma-dev:s390x. 446s Preparing to unpack .../107-libnuma-dev_2.0.18-1build1_s390x.deb ... 446s Unpacking libnuma-dev:s390x (2.0.18-1build1) ... 446s Selecting previously unselected package libltdl7:s390x. 446s Preparing to unpack .../108-libltdl7_2.5.4-4_s390x.deb ... 446s Unpacking libltdl7:s390x (2.5.4-4) ... 446s Selecting previously unselected package libltdl-dev:s390x. 446s Preparing to unpack .../109-libltdl-dev_2.5.4-4_s390x.deb ... 446s Unpacking libltdl-dev:s390x (2.5.4-4) ... 446s Selecting previously unselected package libhwloc-dev:s390x. 446s Preparing to unpack .../110-libhwloc-dev_2.12.0-1_s390x.deb ... 446s Unpacking libhwloc-dev:s390x (2.12.0-1) ... 446s Selecting previously unselected package zlib1g-dev:s390x. 446s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 446s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 446s Selecting previously unselected package libpmix-dev:s390x. 446s Preparing to unpack .../112-libpmix-dev_5.0.6-5_s390x.deb ... 446s Unpacking libpmix-dev:s390x (5.0.6-5) ... 446s Selecting previously unselected package openmpi-bin. 446s Preparing to unpack .../113-openmpi-bin_5.0.7-1_s390x.deb ... 446s Unpacking openmpi-bin (5.0.7-1) ... 446s Selecting previously unselected package libopenmpi-dev:s390x. 446s Preparing to unpack .../114-libopenmpi-dev_5.0.7-1_s390x.deb ... 446s Unpacking libopenmpi-dev:s390x (5.0.7-1) ... 446s Selecting previously unselected package mpi-default-dev. 446s Preparing to unpack .../115-mpi-default-dev_1.18_s390x.deb ... 446s Unpacking mpi-default-dev (1.18) ... 446s Selecting previously unselected package liblammps-dev. 446s Preparing to unpack .../116-liblammps-dev_20240207+dfsg-3build3_s390x.deb ... 446s Unpacking liblammps-dev (20240207+dfsg-3build3) ... 446s Selecting previously unselected package mpi-default-bin. 446s Preparing to unpack .../117-mpi-default-bin_1.18_s390x.deb ... 446s Unpacking mpi-default-bin (1.18) ... 446s Selecting previously unselected package python3-lammps. 446s Preparing to unpack .../118-python3-lammps_20240207+dfsg-3build3_s390x.deb ... 446s Unpacking python3-lammps (20240207+dfsg-3build3) ... 446s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 446s Setting up libtbbmalloc2:s390x (2022.0.0-2) ... 446s Setting up libpixman-1-0:s390x (0.44.0-3) ... 446s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 446s Setting up libwayland-server0:s390x (1.23.1-3) ... 446s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 446s Setting up libpciaccess0:s390x (0.17-3build1) ... 446s Setting up libdouble-conversion3:s390x (3.3.1-1) ... 446s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 446s Setting up libogg0:s390x (1.3.5-3build1) ... 446s Setting up proj-data (9.5.1-1) ... 446s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 446s Setting up libxcb-render0:s390x (1.17.0-2) ... 446s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 446s Setting up libglvnd0:s390x (1.7.0-1build1) ... 446s 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/usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 447s Setting up libmunge2:s390x (0.5.16-1) ... 447s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 447s Setting up libxcb-sync1:s390x (1.17.0-2) ... 447s Setting up libjsoncpp26:s390x (1.9.6-3) ... 447s Setting up fonts-dejavu-mono (2.37-8) ... 447s Setting up libhwloc15:s390x (2.12.0-1) ... 447s Setting up libmpc3:s390x (1.3.1-1build2) ... 447s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 447s Setting up fonts-dejavu-core (2.37-8) ... 447s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 447s Setting up libltdl7:s390x (2.5.4-4) ... 447s Setting up libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 447s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ... 447s Setting up libvulkan1:s390x (1.4.304.0-1) ... 447s Setting up autoconf (2.72-3ubuntu1) ... 447s Setting up libevent-extra-2.1-7t64:s390x (2.1.12-stable-10) ... 447s Setting up libwebp7:s390x (1.5.0-0.1) ... 447s Setting up libubsan1:s390x (15-20250404-0ubuntu1) ... 447s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 447s Setting up libnl-3-dev:s390x (3.7.0-2) ... 447s Setting up ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 447s Setting up libxshmfence1:s390x (1.3-1build5) ... 447s Setting up libxcb-randr0:s390x (1.17.0-2) ... 447s Setting up libasan8:s390x (15-20250404-0ubuntu1) ... 447s Setting up openmpi-common (5.0.7-1) ... 447s Setting up librdmacm1t64:s390x (56.0-4ubuntu1) ... 447s Setting up libxss1:s390x (1:1.2.3-1build3) ... 447s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 447s Setting up libisl23:s390x (0.27-1) ... 447s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 447s Setting up libcc1-0:s390x (15-20250404-0ubuntu1) ... 447s Setting up libsz2:s390x (1.1.3-1) ... 447s Setting up libitm1:s390x (15-20250404-0ubuntu1) ... 447s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 447s Setting up automake (1:1.17-3ubuntu1) ... 447s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 447s Setting up libfabric1:s390x (1.17.0-3.1) ... 447s Setting up mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 447s Setting up liblapack3:s390x (3.12.1-2) ... 447s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 447s Setting up libgbm1:s390x (25.0.3-1ubuntu2) ... 447s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 447s Setting up libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 447s Setting up libkim-api2:s390x (2.3.0-1ubuntu1) ... 447s Setting up libhwloc-plugins:s390x (2.12.0-1) ... 447s Setting up libtbbbind-2-5:s390x (2022.0.0-2) ... 447s Setting up libnl-route-3-dev:s390x (3.7.0-2) ... 447s Setting up libltdl-dev:s390x (2.5.4-4) ... 447s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 447s Setting up libevent-dev (2.1.12-stable-10) ... 447s Setting up libpmix2t64:s390x (5.0.6-5) ... 447s Setting up cpp-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 447s Setting up cpp-14 (14.2.0-19ubuntu2) ... 447s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 447s Setting up libtiff6:s390x (4.7.0-3ubuntu1) ... 447s Setting up libhwloc-dev:s390x (2.12.0-1) ... 447s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 447s Setting up libgcc-14-dev:s390x (14.2.0-19ubuntu2) ... 447s Setting up libpmix-dev:s390x (5.0.6-5) ... 447s Setting up libgfortran-14-dev:s390x (14.2.0-19ubuntu2) ... 447s Setting up libopenmpi40:s390x (5.0.7-1) ... 447s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 447s Setting up libxft2:s390x (2.3.6-1build1) ... 447s Setting up libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 447s Setting up libglx0:s390x (1.7.0-1build1) ... 447s Setting up libproj25:s390x (9.5.1-1) ... 447s Setting up libpnetcdf6:s390x (1.14.0-2) ... 447s Setting up libtk8.6:s390x (8.6.16-1) ... 447s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 447s Setting up libtbb12:s390x (2022.0.0-2) ... 447s Setting up libibverbs-dev:s390x (56.0-4ubuntu1) ... 447s Setting up libcairo2:s390x (1.18.4-1) ... 447s Setting up gcc-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 447s Setting up libgl1:s390x (1.7.0-1build1) ... 447s Setting up libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 447s Setting up libglew2.2:s390x (2.2.0-4build1) ... 447s Setting up openmpi-bin (5.0.7-1) ... 447s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 447s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 447s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 447s Setting up gfortran-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 447s Setting up mpi-default-bin (1.18) ... 447s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 447s Setting up gcc-14 (14.2.0-19ubuntu2) ... 447s Setting up libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 447s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 447s Setting up liblammps0t64:s390x (20240207+dfsg-3build3) ... 447s Setting up libopenmpi-dev:s390x (5.0.7-1) ... 447s update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode 447s Setting up mpi-default-dev (1.18) ... 447s Setting up liblammps-dev (20240207+dfsg-3build3) ... 447s Setting up python3-lammps (20240207+dfsg-3build3) ... 447s Processing triggers for man-db (2.13.0-1) ... 448s Processing triggers for install-info (7.1.1-1) ... 448s Processing triggers for libc-bin (2.41-6ubuntu1) ... 526s autopkgtest [19:04:00]: test command1: cd python/examples; python3 demo.py 526s autopkgtest [19:04:00]: test command1: [----------------------- 527s LAMMPS (7 Feb 2024 - Update 1) 527s 527s Python output: 527s Natoms, mass, x[0][0] coord = 4000 1.0 0.2727243714666721 527s Temperature from compute = 0.750609109548371 527s Energy from equal-style variable = -5.748192616533703 527s Velocity component from atom-style variable = -0.008231833025308041 527s Volume from get_thermo = 4738.213693437576 527s Natoms from get_natoms = 4000 527s Global coords from gather_atoms = 0.2727243714666721 0.1442606170751015 0.02741951954247279 527s Changed x[0][0] via scatter_atoms = 1.272724371466672 527s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 527s using 1 OpenMP thread(s) per MPI task 527s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 527s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 527s 1 by 1 by 1 MPI processor grid 527s Created 4000 atoms 527s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 527s create_atoms CPU = 0.001 seconds 527s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 527s Neighbor list info ... 527s update: every = 20 steps, delay = 0 steps, check = no 527s max neighbors/atom: 2000, page size: 100000 527s master list distance cutoff = 2.8 527s ghost atom cutoff = 2.8 527s binsize = 1.4, bins = 12 12 12 527s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 527s (1) pair lj/cut, perpetual 527s attributes: half, newton on 527s pair build: half/bin/atomonly/newton 527s stencil: half/bin/3d 527s bin: standard 527s Setting up Verlet run ... 527s Unit style : lj 527s Current step : 0 527s Time step : 0.005 527s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 527s Step Temp E_pair E_mol TotEng Press 527s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 527s 100 0.75060911 -5.7481926 0 -4.6225604 0.24772341 527s Loop time of 0.228447 on 1 procs for 100 steps with 4000 atoms 527s 527s Performance: 189102.826 tau/day, 437.738 timesteps/s, 1.751 Matom-step/s 527s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 527s 527s MPI task timing breakdown: 527s Section | min time | avg time | max time |%varavg| %total 527s --------------------------------------------------------------- 527s Pair | 0.19209 | 0.19209 | 0.19209 | 0.0 | 84.08 527s Neigh | 0.027947 | 0.027947 | 0.027947 | 0.0 | 12.23 527s Comm | 0.0036911 | 0.0036911 | 0.0036911 | 0.0 | 1.62 527s Output | 0.00010665 | 0.00010665 | 0.00010665 | 0.0 | 0.05 527s Modify | 0.0037873 | 0.0037873 | 0.0037873 | 0.0 | 1.66 527s Other | | 0.0008257 | | | 0.36 527s 527s Nlocal: 4000 ave 4000 max 4000 min 527s Histogram: 1 0 0 0 0 0 0 0 0 0 527s Nghost: 5770 ave 5770 max 5770 min 527s Histogram: 1 0 0 0 0 0 0 0 0 0 527s Neighs: 150293 ave 150293 max 150293 min 527s Histogram: 1 0 0 0 0 0 0 0 0 0 527s 527s Total # of neighbors = 150293 527s Ave neighs/atom = 37.57325 527s Neighbor list builds = 5 527s Dangerous builds not checked 527s Total wall time: 0:00:00 527s autopkgtest [19:04:01]: test command1: -----------------------] 528s autopkgtest [19:04:02]: test command1: - - - - - - - - - - results - - - - - - - - - - 528s command1 PASS 528s autopkgtest [19:04:02]: @@@@@@@@@@@@@@@@@@@@ summary 528s crack PASS 528s dipole PASS 528s ellipse PASS 528s flow PASS 528s friction PASS 528s hugo PASS 528s command1 PASS 546s nova [W] Using flock in prodstack6-s390x 546s Creating nova instance adt-questing-s390x-lammps-20250502-182433-juju-7f2275-prod-proposed-migration-environment-23-e454d847-654b-418c-b28f-fed530560269 from image adt/ubuntu-questing-s390x-server-20250502.img (UUID 632ecfca-a19d-4f3a-af48-b7883fa0ccf2)... 546s nova [W] Timed out waiting for 3d2f4acb-2670-49b4-aabf-a2fa16e69f52 to get deleted. 546s nova [W] Using flock in prodstack6-s390x 546s flock: timeout while waiting to get lock 546s Creating nova instance adt-questing-s390x-lammps-20250502-182433-juju-7f2275-prod-proposed-migration-environment-23-e454d847-654b-418c-b28f-fed530560269 from image adt/ubuntu-questing-s390x-server-20250502.img (UUID 632ecfca-a19d-4f3a-af48-b7883fa0ccf2)... 546s nova [W] Timed out waiting for 59e5c63a-ed2b-4f99-b932-c2968677e812 to get deleted.