0s autopkgtest [09:24:18]: starting date and time: 2025-05-02 09:24:18+0000 0s autopkgtest [09:24:18]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [09:24:18]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1k5ja0h4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3.13 --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3.13/3.13.3-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-3.secgroup --name adt-questing-s390x-lammps-20250502-092418-juju-7f2275-prod-proposed-migration-environment-20-c4e45de4-9772-4333-b382-7a12df6400bf --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 90s autopkgtest [09:25:48]: testbed dpkg architecture: s390x 90s autopkgtest [09:25:48]: testbed apt version: 3.0.0 91s autopkgtest [09:25:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 91s autopkgtest [09:25:49]: testbed release detected to be: None 92s autopkgtest [09:25:50]: updating testbed package index (apt update) 92s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 92s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 92s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 93s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 93s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 93s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB] 93s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB] 93s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [208 kB] 93s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1079 kB] 93s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [9148 B] 94s Fetched 3701 kB in 2s (2341 kB/s) 94s Reading package lists... 95s autopkgtest [09:25:53]: upgrading testbed (apt dist-upgrade and autopurge) 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 95s Starting 2 pkgProblemResolver with broken count: 0 95s Done 96s Entering ResolveByKeep 96s 96s Calculating upgrade... 96s The following packages will be upgraded: 96s htop libpython3.13 libpython3.13-minimal libpython3.13-stdlib nano 96s python3.13 python3.13-gdbm python3.13-minimal 96s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Need to get 9090 kB of archives. 96s After this operation, 7168 B of additional disk space will be used. 96s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main s390x python3.13 s390x 3.13.3-2 [739 kB] 97s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libpython3.13 s390x 3.13.3-2 [2517 kB] 97s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libpython3.13-stdlib s390x 3.13.3-2 [2054 kB] 98s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main s390x python3.13-minimal s390x 3.13.3-2 [2377 kB] 98s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libpython3.13-minimal s390x 3.13.3-2 [883 kB] 98s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x nano s390x 8.4-1 [299 kB] 98s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x htop s390x 3.4.1-4 [189 kB] 98s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x python3.13-gdbm s390x 3.13.3-2 [31.8 kB] 98s Fetched 9090 kB in 2s (4728 kB/s) 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 99s Preparing to unpack .../0-python3.13_3.13.3-2_s390x.deb ... 99s Unpacking python3.13 (3.13.3-2) over (3.13.3-1) ... 99s Preparing to unpack .../1-libpython3.13_3.13.3-2_s390x.deb ... 99s Unpacking libpython3.13:s390x (3.13.3-2) over (3.13.3-1) ... 99s Preparing to unpack .../2-libpython3.13-stdlib_3.13.3-2_s390x.deb ... 99s Unpacking libpython3.13-stdlib:s390x (3.13.3-2) over (3.13.3-1) ... 99s Preparing to unpack .../3-python3.13-minimal_3.13.3-2_s390x.deb ... 99s Unpacking python3.13-minimal (3.13.3-2) over (3.13.3-1) ... 100s Preparing to unpack .../4-libpython3.13-minimal_3.13.3-2_s390x.deb ... 100s Unpacking libpython3.13-minimal:s390x (3.13.3-2) over (3.13.3-1) ... 100s Preparing to unpack .../5-nano_8.4-1_s390x.deb ... 100s Unpacking nano (8.4-1) over (8.3-1) ... 100s Preparing to unpack .../6-htop_3.4.1-4_s390x.deb ... 100s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 100s Preparing to unpack .../7-python3.13-gdbm_3.13.3-2_s390x.deb ... 100s Unpacking python3.13-gdbm (3.13.3-2) over (3.13.3-1) ... 100s Setting up htop (3.4.1-4) ... 100s Setting up libpython3.13-minimal:s390x (3.13.3-2) ... 100s Setting up nano (8.4-1) ... 100s Installing new version of config file /etc/nanorc ... 100s Setting up python3.13-minimal (3.13.3-2) ... 101s Setting up libpython3.13-stdlib:s390x (3.13.3-2) ... 101s Setting up python3.13-gdbm (3.13.3-2) ... 101s Setting up libpython3.13:s390x (3.13.3-2) ... 101s Setting up python3.13 (3.13.3-2) ... 102s Processing triggers for systemd (257.4-1ubuntu3) ... 102s Processing triggers for man-db (2.13.0-1) ... 104s Processing triggers for install-info (7.1.1-1) ... 104s Processing triggers for libc-bin (2.41-6ubuntu1) ... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Starting pkgProblemResolver with broken count: 0 104s Starting 2 pkgProblemResolver with broken count: 0 104s Done 105s Solving dependencies... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s autopkgtest [09:26:05]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr 6 13:39:00 UTC 2025 107s autopkgtest [09:26:05]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 141s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 141s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 141s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 142s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 142s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 142s gpgv: Can't check signature: No public key 142s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 153s autopkgtest [09:26:51]: testing package lammps version 20240207+dfsg-3build3 154s autopkgtest [09:26:52]: build not needed 174s autopkgtest [09:27:12]: test crack: preparing testbed 174s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 175s The following NEW packages will be installed: 175s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 175s libaec0 libblas3 libcairo2 libdeflate0 libdouble-conversion3 175s libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 libfontconfig1 175s libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 175s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 175s libhdf5-hl-310 libhwloc-plugins libhwloc15 libjbig0 libjpeg-turbo8 libjpeg8 175s libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 libmunge2 libnetcdf22 175s libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 libpmix2t64 175s libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 175s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 175s libtk8.6 libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 175s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 175s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 175s libxrender1 libxshmfence1 libxss1 libxxf86vm1 mesa-libgallium 175s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 175s x11-common 175s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. 175s Need to get 81.8 MB of archives. 175s After this operation, 365 MB of additional disk space will be used. 175s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 175s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 176s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 176s Get:4 http://ftpmaster.internal/ubuntu questing/universe s390x lammps-data all 20240207+dfsg-3build3 [9732 kB] 177s Get:5 http://ftpmaster.internal/ubuntu questing/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 177s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 177s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 177s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 177s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 177s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 177s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 177s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 177s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB] 177s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 177s Get:15 http://ftpmaster.internal/ubuntu questing/universe s390x libdouble-conversion3 s390x 3.3.1-1 [43.3 kB] 177s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10 [7870 B] 177s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x librdmacm1t64 s390x 56.0-4ubuntu1 [74.0 kB] 177s Get:18 http://ftpmaster.internal/ubuntu questing/universe s390x libfabric1 s390x 1.17.0-3.1 [558 kB] 177s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB] 177s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build1 [511 kB] 177s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x libwayland-server0 s390x 1.23.1-3 [37.3 kB] 177s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 177s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 177s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 177s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 177s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 177s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 177s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 177s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x mesa-libgallium s390x 25.0.3-1ubuntu2 [8057 kB] 178s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libgbm1 s390x 25.0.3-1ubuntu2 [34.5 kB] 178s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB] 178s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 178s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libgl1-mesa-dri s390x 25.0.3-1ubuntu2 [35.5 kB] 178s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 178s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 178s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 178s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libglx-mesa0 s390x 25.0.3-1ubuntu2 [161 kB] 178s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 178s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 178s Get:40 http://ftpmaster.internal/ubuntu questing/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 178s Get:41 http://ftpmaster.internal/ubuntu questing/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 178s Get:42 http://ftpmaster.internal/ubuntu questing/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 178s Get:43 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 178s Get:44 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 178s Get:45 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc15 s390x 2.12.0-1 [176 kB] 178s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 178s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 178s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 178s Get:49 http://ftpmaster.internal/ubuntu questing/universe s390x libkim-api2 s390x 2.3.0-1ubuntu1 [602 kB] 178s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 178s Get:51 http://ftpmaster.internal/ubuntu questing/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 178s Get:52 http://ftpmaster.internal/ubuntu questing/universe s390x libmunge2 s390x 0.5.16-1 [15.2 kB] 178s Get:53 http://ftpmaster.internal/ubuntu questing/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB] 178s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 178s Get:55 http://ftpmaster.internal/ubuntu questing/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1build1 [41.1 kB] 178s Get:56 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc-plugins s390x 2.12.0-1 [16.1 kB] 178s Get:57 http://ftpmaster.internal/ubuntu questing/universe s390x libpmix2t64 s390x 5.0.6-5 [715 kB] 178s Get:58 http://ftpmaster.internal/ubuntu questing/universe s390x libopenmpi40 s390x 5.0.7-1 [2196 kB] 178s Get:59 http://ftpmaster.internal/ubuntu questing/universe s390x libpnetcdf6 s390x 1.14.0-2 [1172 kB] 178s Get:60 http://ftpmaster.internal/ubuntu questing/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 178s Get:61 http://ftpmaster.internal/ubuntu questing/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 178s Get:62 http://ftpmaster.internal/ubuntu questing/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 178s Get:63 http://ftpmaster.internal/ubuntu questing/universe s390x proj-data all 9.5.1-1 [7924 kB] 179s Get:64 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 179s Get:65 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 179s Get:66 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 179s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 179s Get:68 http://ftpmaster.internal/ubuntu questing/universe s390x libproj25 s390x 9.5.1-1 [1452 kB] 179s Get:69 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbbind-2-5 s390x 2022.0.0-2 [15.3 kB] 179s Get:70 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbmalloc2 s390x 2022.0.0-2 [57.7 kB] 179s Get:71 http://ftpmaster.internal/ubuntu questing/universe s390x libtbb12 s390x 2022.0.0-2 [99.9 kB] 179s Get:72 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 179s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x libtheoradec1 s390x 1.2.0~alpha1+dfsg-6 [68.6 kB] 179s Get:74 http://ftpmaster.internal/ubuntu questing/main s390x libtheoraenc1 s390x 1.2.0~alpha1+dfsg-6 [142 kB] 179s Get:75 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 179s Get:76 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 179s Get:77 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 179s Get:78 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 179s Get:79 http://ftpmaster.internal/ubuntu questing/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-4ubuntu1 [27.1 MB] 180s Get:80 http://ftpmaster.internal/ubuntu questing/universe s390x liblammps0t64 s390x 20240207+dfsg-3build3 [7859 kB] 180s Get:81 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-common all 5.0.7-1 [97.9 kB] 180s Get:82 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-bin s390x 5.0.7-1 [200 kB] 180s Get:83 http://ftpmaster.internal/ubuntu questing/universe s390x mpi-default-bin s390x 1.18 [2510 B] 180s Get:84 http://ftpmaster.internal/ubuntu questing/universe s390x lammps s390x 20240207+dfsg-3build3 [15.3 kB] 180s Fetched 81.8 MB in 5s (15.9 MB/s) 180s Selecting previously unselected package fonts-dejavu-mono. 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 180s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 180s Unpacking fonts-dejavu-mono (2.37-8) ... 180s Selecting previously unselected package fonts-dejavu-core. 180s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 180s Unpacking fonts-dejavu-core (2.37-8) ... 180s Selecting previously unselected package fontconfig-config. 180s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 180s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 181s Selecting previously unselected package lammps-data. 181s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 181s Unpacking lammps-data (20240207+dfsg-3build3) ... 181s Selecting previously unselected package libaec0:s390x. 181s Preparing to unpack .../04-libaec0_1.1.3-1_s390x.deb ... 181s Unpacking libaec0:s390x (1.1.3-1) ... 181s Selecting previously unselected package libblas3:s390x. 181s Preparing to unpack .../05-libblas3_3.12.1-2_s390x.deb ... 181s Unpacking libblas3:s390x (3.12.1-2) ... 181s Selecting previously unselected package libfreetype6:s390x. 181s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 181s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 181s Selecting previously unselected package libfontconfig1:s390x. 181s Preparing to unpack .../07-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 181s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 181s Selecting previously unselected package libpixman-1-0:s390x. 181s Preparing to unpack .../08-libpixman-1-0_0.44.0-3_s390x.deb ... 181s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 181s Selecting previously unselected package libxcb-render0:s390x. 181s Preparing to unpack .../09-libxcb-render0_1.17.0-2_s390x.deb ... 181s Unpacking libxcb-render0:s390x (1.17.0-2) ... 181s Selecting previously unselected package libxcb-shm0:s390x. 181s Preparing to unpack .../10-libxcb-shm0_1.17.0-2_s390x.deb ... 181s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 181s Selecting previously unselected package libxrender1:s390x. 181s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 181s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 181s Selecting previously unselected package libcairo2:s390x. 181s Preparing to unpack .../12-libcairo2_1.18.4-1_s390x.deb ... 181s Unpacking libcairo2:s390x (1.18.4-1) ... 181s Selecting previously unselected package libdeflate0:s390x. 181s Preparing to unpack .../13-libdeflate0_1.23-1_s390x.deb ... 181s Unpacking libdeflate0:s390x (1.23-1) ... 181s Selecting previously unselected package libdouble-conversion3:s390x. 181s Preparing to unpack .../14-libdouble-conversion3_3.3.1-1_s390x.deb ... 181s Unpacking libdouble-conversion3:s390x (3.3.1-1) ... 181s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 181s Preparing to unpack .../15-libevent-pthreads-2.1-7t64_2.1.12-stable-10_s390x.deb ... 181s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 181s Selecting previously unselected package librdmacm1t64:s390x. 181s Preparing to unpack .../16-librdmacm1t64_56.0-4ubuntu1_s390x.deb ... 181s Unpacking librdmacm1t64:s390x (56.0-4ubuntu1) ... 181s Selecting previously unselected package libfabric1:s390x. 181s Preparing to unpack .../17-libfabric1_1.17.0-3.1_s390x.deb ... 181s Unpacking libfabric1:s390x (1.17.0-3.1) ... 181s Selecting previously unselected package libgomp1:s390x. 181s Preparing to unpack .../18-libgomp1_15-20250404-0ubuntu1_s390x.deb ... 181s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ... 181s Selecting previously unselected package libfftw3-double3:s390x. 181s Preparing to unpack .../19-libfftw3-double3_3.3.10-2fakesync1build1_s390x.deb ... 181s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 181s Selecting previously unselected package libwayland-server0:s390x. 181s Preparing to unpack .../20-libwayland-server0_1.23.1-3_s390x.deb ... 181s Unpacking libwayland-server0:s390x (1.23.1-3) ... 181s Selecting previously unselected package libx11-xcb1:s390x. 181s Preparing to unpack .../21-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 181s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 181s Selecting previously unselected package libxcb-dri3-0:s390x. 181s Preparing to unpack .../22-libxcb-dri3-0_1.17.0-2_s390x.deb ... 181s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 181s Selecting previously unselected package libxcb-present0:s390x. 181s Preparing to unpack .../23-libxcb-present0_1.17.0-2_s390x.deb ... 181s Unpacking libxcb-present0:s390x (1.17.0-2) ... 181s Selecting previously unselected package libxcb-randr0:s390x. 181s Preparing to unpack .../24-libxcb-randr0_1.17.0-2_s390x.deb ... 181s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 181s Selecting previously unselected package libxcb-sync1:s390x. 181s Preparing to unpack .../25-libxcb-sync1_1.17.0-2_s390x.deb ... 181s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 181s Selecting previously unselected package libxcb-xfixes0:s390x. 181s Preparing to unpack .../26-libxcb-xfixes0_1.17.0-2_s390x.deb ... 181s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 181s Selecting previously unselected package libxshmfence1:s390x. 181s Preparing to unpack .../27-libxshmfence1_1.3-1build5_s390x.deb ... 181s Unpacking libxshmfence1:s390x (1.3-1build5) ... 181s Selecting previously unselected package mesa-libgallium:s390x. 181s Preparing to unpack .../28-mesa-libgallium_25.0.3-1ubuntu2_s390x.deb ... 181s Unpacking mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 181s Selecting previously unselected package libgbm1:s390x. 182s Preparing to unpack .../29-libgbm1_25.0.3-1ubuntu2_s390x.deb ... 182s Unpacking libgbm1:s390x (25.0.3-1ubuntu2) ... 182s Selecting previously unselected package libgfortran5:s390x. 182s Preparing to unpack .../30-libgfortran5_15-20250404-0ubuntu1_s390x.deb ... 182s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ... 182s Selecting previously unselected package libvulkan1:s390x. 182s Preparing to unpack .../31-libvulkan1_1.4.304.0-1_s390x.deb ... 182s Unpacking libvulkan1:s390x (1.4.304.0-1) ... 182s Selecting previously unselected package libgl1-mesa-dri:s390x. 182s Preparing to unpack .../32-libgl1-mesa-dri_25.0.3-1ubuntu2_s390x.deb ... 182s Unpacking libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 182s Selecting previously unselected package libglvnd0:s390x. 182s Preparing to unpack .../33-libglvnd0_1.7.0-1build1_s390x.deb ... 182s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 182s Selecting previously unselected package libxcb-glx0:s390x. 182s Preparing to unpack .../34-libxcb-glx0_1.17.0-2_s390x.deb ... 182s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 182s Selecting previously unselected package libxxf86vm1:s390x. 182s Preparing to unpack .../35-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 182s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 182s Selecting previously unselected package libglx-mesa0:s390x. 182s Preparing to unpack .../36-libglx-mesa0_25.0.3-1ubuntu2_s390x.deb ... 182s Unpacking libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 182s Selecting previously unselected package libglx0:s390x. 182s Preparing to unpack .../37-libglx0_1.7.0-1build1_s390x.deb ... 182s Unpacking libglx0:s390x (1.7.0-1build1) ... 182s Selecting previously unselected package libgl1:s390x. 182s Preparing to unpack .../38-libgl1_1.7.0-1build1_s390x.deb ... 182s Unpacking libgl1:s390x (1.7.0-1build1) ... 182s Selecting previously unselected package libgl2ps1.4. 182s Preparing to unpack .../39-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 182s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 182s Selecting previously unselected package libglew2.2:s390x. 182s Preparing to unpack .../40-libglew2.2_2.2.0-4build1_s390x.deb ... 182s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 182s Selecting previously unselected package libsz2:s390x. 182s Preparing to unpack .../41-libsz2_1.1.3-1_s390x.deb ... 182s Unpacking libsz2:s390x (1.1.3-1) ... 182s Selecting previously unselected package libhdf5-310:s390x. 182s Preparing to unpack .../42-libhdf5-310_1.14.5+repack-3_s390x.deb ... 182s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 182s Selecting previously unselected package libhdf5-hl-310:s390x. 182s Preparing to unpack .../43-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 182s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 182s Selecting previously unselected package libhwloc15:s390x. 182s Preparing to unpack .../44-libhwloc15_2.12.0-1_s390x.deb ... 182s Unpacking libhwloc15:s390x (2.12.0-1) ... 182s Selecting previously unselected package libjpeg-turbo8:s390x. 182s Preparing to unpack .../45-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 182s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 182s Selecting previously unselected package libjpeg8:s390x. 182s Preparing to unpack .../46-libjpeg8_8c-2ubuntu11_s390x.deb ... 182s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 182s Selecting previously unselected package libjsoncpp26:s390x. 182s Preparing to unpack .../47-libjsoncpp26_1.9.6-3_s390x.deb ... 182s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 182s Selecting previously unselected package libkim-api2:s390x. 182s Preparing to unpack .../48-libkim-api2_2.3.0-1ubuntu1_s390x.deb ... 182s Unpacking libkim-api2:s390x (2.3.0-1ubuntu1) ... 182s Selecting previously unselected package liblapack3:s390x. 182s Preparing to unpack .../49-liblapack3_3.12.1-2_s390x.deb ... 182s Unpacking liblapack3:s390x (3.12.1-2) ... 182s Selecting previously unselected package libnetcdf22:s390x. 182s Preparing to unpack .../50-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 182s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 182s Selecting previously unselected package libmunge2:s390x. 182s Preparing to unpack .../51-libmunge2_0.5.16-1_s390x.deb ... 182s Unpacking libmunge2:s390x (0.5.16-1) ... 182s Selecting previously unselected package libpciaccess0:s390x. 182s Preparing to unpack .../52-libpciaccess0_0.17-3build1_s390x.deb ... 182s Unpacking libpciaccess0:s390x (0.17-3build1) ... 182s Selecting previously unselected package libxnvctrl0:s390x. 182s Preparing to unpack .../53-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 182s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 182s Selecting previously unselected package ocl-icd-libopencl1:s390x. 182s Preparing to unpack .../54-ocl-icd-libopencl1_2.3.2-1build1_s390x.deb ... 182s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 182s Selecting previously unselected package libhwloc-plugins:s390x. 182s Preparing to unpack .../55-libhwloc-plugins_2.12.0-1_s390x.deb ... 182s Unpacking libhwloc-plugins:s390x (2.12.0-1) ... 182s Selecting previously unselected package libpmix2t64:s390x. 182s Preparing to unpack .../56-libpmix2t64_5.0.6-5_s390x.deb ... 182s Unpacking libpmix2t64:s390x (5.0.6-5) ... 182s Selecting previously unselected package libopenmpi40:s390x. 182s Preparing to unpack .../57-libopenmpi40_5.0.7-1_s390x.deb ... 182s Unpacking libopenmpi40:s390x (5.0.7-1) ... 182s Selecting previously unselected package libpnetcdf6:s390x. 182s Preparing to unpack .../58-libpnetcdf6_1.14.0-2_s390x.deb ... 182s Unpacking libpnetcdf6:s390x (1.14.0-2) ... 182s Selecting previously unselected package libvoro++1. 182s Preparing to unpack .../59-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 182s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 182s Selecting previously unselected package libogg0:s390x. 182s Preparing to unpack .../60-libogg0_1.3.5-3build1_s390x.deb ... 182s Unpacking libogg0:s390x (1.3.5-3build1) ... 182s Selecting previously unselected package libopengl0:s390x. 182s Preparing to unpack .../61-libopengl0_1.7.0-1build1_s390x.deb ... 182s Unpacking libopengl0:s390x (1.7.0-1build1) ... 182s Selecting previously unselected package proj-data. 182s Preparing to unpack .../62-proj-data_9.5.1-1_all.deb ... 182s Unpacking proj-data (9.5.1-1) ... 182s Selecting previously unselected package libjbig0:s390x. 182s Preparing to unpack .../63-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 182s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 182s Selecting previously unselected package libsharpyuv0:s390x. 182s Preparing to unpack .../64-libsharpyuv0_1.5.0-0.1_s390x.deb ... 182s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 182s Selecting previously unselected package libwebp7:s390x. 182s Preparing to unpack .../65-libwebp7_1.5.0-0.1_s390x.deb ... 182s Unpacking libwebp7:s390x (1.5.0-0.1) ... 182s Selecting previously unselected package libtiff6:s390x. 182s Preparing to unpack .../66-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 182s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 182s Selecting previously unselected package libproj25:s390x. 182s Preparing to unpack .../67-libproj25_9.5.1-1_s390x.deb ... 182s Unpacking libproj25:s390x (9.5.1-1) ... 182s Selecting previously unselected package libtbbbind-2-5:s390x. 182s Preparing to unpack .../68-libtbbbind-2-5_2022.0.0-2_s390x.deb ... 182s Unpacking libtbbbind-2-5:s390x (2022.0.0-2) ... 182s Selecting previously unselected package libtbbmalloc2:s390x. 182s Preparing to unpack .../69-libtbbmalloc2_2022.0.0-2_s390x.deb ... 182s Unpacking libtbbmalloc2:s390x (2022.0.0-2) ... 182s Selecting previously unselected package libtbb12:s390x. 182s Preparing to unpack .../70-libtbb12_2022.0.0-2_s390x.deb ... 182s Unpacking libtbb12:s390x (2022.0.0-2) ... 182s Selecting previously unselected package libtcl8.6:s390x. 182s Preparing to unpack .../71-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 182s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 182s Selecting previously unselected package libtheoradec1:s390x. 182s Preparing to unpack .../72-libtheoradec1_1.2.0~alpha1+dfsg-6_s390x.deb ... 182s Unpacking libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 182s Selecting previously unselected package libtheoraenc1:s390x. 182s Preparing to unpack .../73-libtheoraenc1_1.2.0~alpha1+dfsg-6_s390x.deb ... 182s Unpacking libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 182s Selecting previously unselected package libxft2:s390x. 182s Preparing to unpack .../74-libxft2_2.3.6-1build1_s390x.deb ... 182s Unpacking libxft2:s390x (2.3.6-1build1) ... 182s Selecting previously unselected package x11-common. 182s Preparing to unpack .../75-x11-common_1%3a7.7+23ubuntu4_all.deb ... 182s Unpacking x11-common (1:7.7+23ubuntu4) ... 182s Selecting previously unselected package libxss1:s390x. 182s Preparing to unpack .../76-libxss1_1%3a1.2.3-1build3_s390x.deb ... 182s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 182s Selecting previously unselected package libtk8.6:s390x. 182s Preparing to unpack .../77-libtk8.6_8.6.16-1_s390x.deb ... 182s Unpacking libtk8.6:s390x (8.6.16-1) ... 182s Selecting previously unselected package libvtk9.3:s390x. 182s Preparing to unpack .../78-libvtk9.3_9.3.0+dfsg1-4ubuntu1_s390x.deb ... 182s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 183s Selecting previously unselected package liblammps0t64:s390x. 183s Preparing to unpack .../79-liblammps0t64_20240207+dfsg-3build3_s390x.deb ... 183s Unpacking liblammps0t64:s390x (20240207+dfsg-3build3) ... 183s Selecting previously unselected package openmpi-common. 183s Preparing to unpack .../80-openmpi-common_5.0.7-1_all.deb ... 183s Unpacking openmpi-common (5.0.7-1) ... 183s Selecting previously unselected package openmpi-bin. 183s Preparing to unpack .../81-openmpi-bin_5.0.7-1_s390x.deb ... 183s Unpacking openmpi-bin (5.0.7-1) ... 183s Selecting previously unselected package mpi-default-bin. 183s Preparing to unpack .../82-mpi-default-bin_1.18_s390x.deb ... 183s Unpacking mpi-default-bin (1.18) ... 183s Selecting previously unselected package lammps. 183s Preparing to unpack .../83-lammps_20240207+dfsg-3build3_s390x.deb ... 183s Unpacking lammps (20240207+dfsg-3build3) ... 183s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 183s Setting up libtbbmalloc2:s390x (2022.0.0-2) ... 183s Setting up libpixman-1-0:s390x (0.44.0-3) ... 183s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 183s Setting up libwayland-server0:s390x (1.23.1-3) ... 183s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 183s Setting up libpciaccess0:s390x (0.17-3build1) ... 183s Setting up libdouble-conversion3:s390x (3.3.1-1) ... 183s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 183s Setting up libogg0:s390x (1.3.5-3build1) ... 183s Setting up proj-data (9.5.1-1) ... 183s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 183s Setting up lammps-data (20240207+dfsg-3build3) ... 183s Setting up libxcb-render0:s390x (1.17.0-2) ... 183s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 183s Setting up libglvnd0:s390x (1.7.0-1build1) ... 183s Setting up libxcb-glx0:s390x (1.17.0-2) ... 183s Setting up x11-common (1:7.7+23ubuntu4) ... 184s Setting up libdeflate0:s390x (1.23-1) ... 184s Setting up libxcb-shm0:s390x (1.17.0-2) ... 184s Setting up libgomp1:s390x (15-20250404-0ubuntu1) ... 184s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 184s Setting up libaec0:s390x (1.1.3-1) ... 184s Setting up libopengl0:s390x (1.7.0-1build1) ... 184s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 184s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 184s Setting up libxcb-present0:s390x (1.17.0-2) ... 184s Setting up libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 184s Setting up libblas3:s390x (3.12.1-2) ... 184s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 184s Setting up libmunge2:s390x (0.5.16-1) ... 184s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 184s Setting up libxcb-sync1:s390x (1.17.0-2) ... 184s Setting up libjsoncpp26:s390x (1.9.6-3) ... 184s Setting up fonts-dejavu-mono (2.37-8) ... 184s Setting up libhwloc15:s390x (2.12.0-1) ... 184s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 184s Setting up fonts-dejavu-core (2.37-8) ... 184s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 184s Setting up libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 184s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ... 184s Setting up libvulkan1:s390x (1.4.304.0-1) ... 184s Setting up libwebp7:s390x (1.5.0-0.1) ... 184s Setting up ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 184s Setting up libxshmfence1:s390x (1.3-1build5) ... 184s Setting up libxcb-randr0:s390x (1.17.0-2) ... 184s Setting up openmpi-common (5.0.7-1) ... 184s Setting up librdmacm1t64:s390x (56.0-4ubuntu1) ... 184s Setting up libxss1:s390x (1:1.2.3-1build3) ... 184s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 184s Setting up libsz2:s390x (1.1.3-1) ... 184s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 184s Setting up libfabric1:s390x (1.17.0-3.1) ... 184s Setting up mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 184s Setting up liblapack3:s390x (3.12.1-2) ... 184s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 184s Setting up libgbm1:s390x (25.0.3-1ubuntu2) ... 184s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 184s Setting up libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 184s Setting up libkim-api2:s390x (2.3.0-1ubuntu1) ... 184s Setting up libhwloc-plugins:s390x (2.12.0-1) ... 184s Setting up libtbbbind-2-5:s390x (2022.0.0-2) ... 184s Setting up libpmix2t64:s390x (5.0.6-5) ... 184s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 184s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 184s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 184s Setting up libopenmpi40:s390x (5.0.7-1) ... 184s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 184s Setting up libxft2:s390x (2.3.6-1build1) ... 184s Setting up libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 184s Setting up libglx0:s390x (1.7.0-1build1) ... 184s Setting up libproj25:s390x (9.5.1-1) ... 184s Setting up libpnetcdf6:s390x (1.14.0-2) ... 184s Setting up libtk8.6:s390x (8.6.16-1) ... 184s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 184s Setting up libtbb12:s390x (2022.0.0-2) ... 184s Setting up libcairo2:s390x (1.18.4-1) ... 184s Setting up libgl1:s390x (1.7.0-1build1) ... 184s Setting up libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 184s Setting up libglew2.2:s390x (2.2.0-4build1) ... 184s Setting up openmpi-bin (5.0.7-1) ... 184s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 184s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 184s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 184s Setting up mpi-default-bin (1.18) ... 184s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 184s Setting up libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 184s Setting up liblammps0t64:s390x (20240207+dfsg-3build3) ... 184s Setting up lammps (20240207+dfsg-3build3) ... 184s Processing triggers for man-db (2.13.0-1) ... 185s Processing triggers for libc-bin (2.41-6ubuntu1) ... 186s autopkgtest [09:27:24]: test crack: [----------------------- 186s LAMMPS (7 Feb 2024 - Update 1) 186s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 186s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 186s using 1 OpenMP thread(s) per MPI task 186s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 186s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 186s 2 by 1 by 1 MPI processor grid 186s Created 8141 atoms 186s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 186s create_atoms CPU = 0.001 seconds 186s 302 atoms in group lower 186s 302 atoms in group upper 186s 604 atoms in group boundary 186s 7537 atoms in group mobile 186s 841 atoms in group leftupper 186s 841 atoms in group leftlower 186s Setting atom values ... 186s 841 settings made for type 186s Setting atom values ... 186s 841 settings made for type 186s Setting atom values ... 186s 302 settings made for type 186s Setting atom values ... 186s 302 settings made for type 186s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 186s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 186s Neighbor list info ... 186s update: every = 1 steps, delay = 5 steps, check = yes 186s max neighbors/atom: 2000, page size: 100000 186s master list distance cutoff = 2.8 186s ghost atom cutoff = 2.8 186s binsize = 1.4, bins = 80 56 1 186s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 186s (1) pair lj/cut, perpetual 186s attributes: half, newton on 186s pair build: half/bin/atomonly/newton 186s stencil: half/bin/2d 186s bin: standard 186s Setting up Verlet run ... 186s Unit style : lj 186s Current step : 0 186s Time step : 0.003 186s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 186s Step Temp E_pair E_mol TotEng Press Volume 186s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 186s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 186s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 186s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 187s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 187s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 187s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 187s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 187s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 187s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 188s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 188s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 188s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 188s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 189s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 189s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 189s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 189s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 189s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 190s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 190s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 190s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 190s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 191s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 191s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 191s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 191s Loop time of 5.21007 on 2 procs for 5000 steps with 8141 atoms 191s 191s Performance: 248748.873 tau/day, 959.679 timesteps/s, 7.813 Matom-step/s 191s 68.8% CPU use with 2 MPI tasks x 1 OpenMP threads 191s 191s MPI task timing breakdown: 191s Section | min time | avg time | max time |%varavg| %total 191s --------------------------------------------------------------- 191s Pair | 2.9186 | 2.9628 | 3.007 | 2.6 | 56.87 191s Neigh | 0.1766 | 0.18361 | 0.19063 | 1.6 | 3.52 191s Comm | 1.3398 | 1.3633 | 1.3867 | 2.0 | 26.17 191s Output | 0.0011436 | 0.0029705 | 0.0047973 | 3.4 | 0.06 191s Modify | 0.36291 | 0.36835 | 0.37379 | 0.9 | 7.07 191s Other | | 0.3291 | | | 6.32 191s 191s Nlocal: 4070.5 ave 4085 max 4056 min 191s Histogram: 1 0 0 0 0 0 0 0 0 1 191s Nghost: 207 ave 208 max 206 min 191s Histogram: 1 0 0 0 0 0 0 0 0 1 191s Neighs: 35700 ave 35927 max 35473 min 191s Histogram: 1 0 0 0 0 0 0 0 0 1 191s 191s Total # of neighbors = 71400 191s Ave neighs/atom = 8.7704213 191s Neighbor list builds = 106 191s Dangerous builds = 0 191s Total wall time: 0:00:05 191s LAMMPS (7 Feb 2024 - Update 1) 200s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 200s using 1 OpenMP thread(s) per MPI task 200s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 200s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 200s 1 by 1 by 1 MPI processor grid 200s Created 8141 atoms 200s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 200s create_atoms CPU = 0.002 seconds 200s 302 atoms in group lower 200s 302 atoms in group upper 200s 604 atoms in group boundary 200s 7537 atoms in group mobile 200s 841 atoms in group leftupper 200s 841 atoms in group leftlower 200s Setting atom values ... 200s 841 settings made for type 200s Setting atom values ... 200s 841 settings made for type 200s Setting atom values ... 200s 302 settings made for type 200s Setting atom values ... 200s 302 settings made for type 200s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 200s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 200s Neighbor list info ... 200s update: every = 1 steps, delay = 5 steps, check = yes 200s max neighbors/atom: 2000, page size: 100000 200s master list distance cutoff = 2.8 200s ghost atom cutoff = 2.8 200s binsize = 1.4, bins = 80 56 1 200s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 200s (1) pair lj/cut, perpetual 200s attributes: half, newton on 200s pair build: half/bin/atomonly/newton 200s stencil: half/bin/2d 200s bin: standard 200s Setting up Verlet run ... 200s Unit style : lj 200s Current step : 0 200s Time step : 0.003 200s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 200s Step Temp E_pair E_mol TotEng Press Volume 200s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 200s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 200s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 200s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 200s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 200s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 200s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 200s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 200s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 200s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 200s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 200s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 200s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 200s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 200s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 200s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 200s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 200s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 200s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 200s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 200s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 200s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 200s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 200s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 200s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 200s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 200s Loop time of 8.64886 on 1 procs for 5000 steps with 8141 atoms 200s 200s Performance: 149846.324 tau/day, 578.111 timesteps/s, 4.706 Matom-step/s 200s 61.2% CPU use with 1 MPI tasks x 1 OpenMP threads 200s 200s MPI task timing breakdown: 200s Section | min time | avg time | max time |%varavg| %total 200s --------------------------------------------------------------- 200s Pair | 7.1646 | 7.1646 | 7.1646 | 0.0 | 82.84 200s Neigh | 0.38705 | 0.38705 | 0.38705 | 0.0 | 4.48 200s Comm | 0.0058094 | 0.0058094 | 0.0058094 | 0.0 | 0.07 200s Output | 0.0025153 | 0.0025153 | 0.0025153 | 0.0 | 0.03 200s Modify | 0.85979 | 0.85979 | 0.85979 | 0.0 | 9.94 200s Other | | 0.2291 | | | 2.65 200s 200s Nlocal: 8141 ave 8141 max 8141 min 200s Histogram: 1 0 0 0 0 0 0 0 0 0 200s Nghost: 0 ave 0 max 0 min 200s Histogram: 1 0 0 0 0 0 0 0 0 0 200s Neighs: 71389 ave 71389 max 71389 min 200s Histogram: 1 0 0 0 0 0 0 0 0 0 200s 200s Total # of neighbors = 71389 200s Ave neighs/atom = 8.7690701 200s Neighbor list builds = 100 200s Dangerous builds = 0 200s Total wall time: 0:00:08 200s run: OK 200s autopkgtest [09:27:38]: test crack: -----------------------] 201s crack PASS 201s autopkgtest [09:27:39]: test crack: - - - - - - - - - - results - - - - - - - - - - 201s autopkgtest [09:27:39]: test dipole: preparing testbed 201s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s Starting pkgProblemResolver with broken count: 0 202s Starting 2 pkgProblemResolver with broken count: 0 202s Done 202s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 203s autopkgtest [09:27:41]: test dipole: [----------------------- 203s LAMMPS (7 Feb 2024 - Update 1) 203s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 203s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 203s using 1 OpenMP thread(s) per MPI task 203s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 203s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 203s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 203s 2 by 1 by 1 MPI processor grid 203s Created 200 atoms 203s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 203s create_atoms CPU = 0.001 seconds 203s Setting atom values ... 203s 200 settings made for mass 203s Setting atom values ... 203s 200 settings made for dipole/random 203s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 203s Neighbor list info ... 203s update: every = 1 steps, delay = 0 steps, check = yes 203s max neighbors/atom: 2000, page size: 100000 203s master list distance cutoff = 2.8 203s ghost atom cutoff = 2.8 203s binsize = 1.4, bins = 13 13 2 203s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 203s (1) pair lj/cut/dipole/cut, perpetual 203s attributes: half, newton on 203s pair build: half/bin/atomonly/newton 203s stencil: half/bin/2d 203s bin: standard 203s Setting up Verlet run ... 203s Unit style : lj 203s Current step : 0 203s Time step : 0.005 203s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 203s Step Temp E_pair c_erot TotEng Press 203s 0 0 -2.1717485 0 -2.1717485 -2.5549017 203s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 203s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 203s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 203s 2000 0.41682156 -2.8150619 0.2305314 -2.4003245 -0.12755885 203s 2500 0.4223725 -2.7993826 0.21202048 -2.3791219 -0.42760254 203s 3000 0.40674172 -2.7701159 0.20435228 -2.3654079 0.12191183 203s 3500 0.41566211 -2.7940342 0.2127683 -2.3804504 -0.047420259 203s 4000 0.39899304 -2.7922419 0.23261768 -2.3952438 -0.5584713 203s 4500 0.41521411 -2.7902637 0.21553109 -2.3771257 -0.39868711 203s 5000 0.43435521 -2.7839342 0.20079255 -2.3517508 -0.23557371 203s 5500 0.43573361 -2.832029 0.24954704 -2.3984741 -0.30757008 203s 6000 0.43444077 -2.7971759 0.22707649 -2.3649073 -0.050026659 203s 6500 0.45018406 -2.802489 0.21507806 -2.3545558 -0.24632195 203s 7000 0.50302088 -2.8284285 0.19272668 -2.3279228 0.21477101 203s 7500 0.40216423 -2.7684646 0.24505695 -2.3683112 -0.038037764 203s 8000 0.41559297 -2.759803 0.23021572 -2.346288 -0.2498825 203s 8500 0.44167949 -2.7440933 0.20455344 -2.3046222 0.035670346 203s 9000 0.4218566 -2.7577529 0.23796636 -2.3380055 -0.4366142 203s 9500 0.46009563 -2.7683135 0.2289365 -2.3105184 -0.11500533 203s 10000 0.41474987 -2.747283 0.25293544 -2.3346069 -0.20525996 203s Loop time of 0.473726 on 2 procs for 10000 steps with 200 atoms 203s 203s Performance: 9119186.341 tau/day, 21109.228 timesteps/s, 4.222 Matom-step/s 203s 98.5% CPU use with 2 MPI tasks x 1 OpenMP threads 203s 203s MPI task timing breakdown: 203s Section | min time | avg time | max time |%varavg| %total 203s --------------------------------------------------------------- 203s Pair | 0.31851 | 0.3238 | 0.3291 | 0.9 | 68.35 203s Neigh | 0.01706 | 0.017235 | 0.017409 | 0.1 | 3.64 203s Comm | 0.085251 | 0.09105 | 0.096849 | 1.9 | 19.22 203s Output | 0.00027572 | 0.00048888 | 0.00070204 | 0.0 | 0.10 203s Modify | 0.028175 | 0.028606 | 0.029036 | 0.3 | 6.04 203s Other | | 0.01255 | | | 2.65 203s 203s Nlocal: 100 ave 100 max 100 min 203s Histogram: 2 0 0 0 0 0 0 0 0 0 203s Nghost: 122.5 ave 125 max 120 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s Neighs: 801 ave 817 max 785 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s 203s Total # of neighbors = 1602 203s Ave neighs/atom = 8.01 203s Neighbor list builds = 681 203s Dangerous builds = 0 203s Total wall time: 0:00:00 204s LAMMPS (7 Feb 2024 - Update 1) 205s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 205s using 1 OpenMP thread(s) per MPI task 205s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 205s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 205s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 205s 1 by 1 by 1 MPI processor grid 205s Created 200 atoms 205s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 205s create_atoms CPU = 0.000 seconds 205s Setting atom values ... 205s 200 settings made for mass 205s Setting atom values ... 205s 200 settings made for dipole/random 205s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 205s Neighbor list info ... 205s update: every = 1 steps, delay = 0 steps, check = yes 205s max neighbors/atom: 2000, page size: 100000 205s master list distance cutoff = 2.8 205s ghost atom cutoff = 2.8 205s binsize = 1.4, bins = 13 13 2 205s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 205s (1) pair lj/cut/dipole/cut, perpetual 205s attributes: half, newton on 205s pair build: half/bin/atomonly/newton 205s stencil: half/bin/2d 205s bin: standard 205s Setting up Verlet run ... 205s Unit style : lj 205s Current step : 0 205s Time step : 0.005 205s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 205s Step Temp E_pair c_erot TotEng Press 205s 0 0 -2.1717485 0 -2.1717485 -2.5549017 205s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 205s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 205s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355613 205s 2000 0.4168217 -2.8150621 0.2305314 -2.4003245 -0.12755874 205s 2500 0.42235256 -2.79937 0.21201967 -2.3791292 -0.42752528 205s 3000 0.40118286 -2.7566267 0.19795371 -2.3574498 0.17122949 205s 3500 0.41913359 -2.789969 0.21614734 -2.3729311 -0.22517024 205s 4000 0.4121296 -2.7638868 0.20353041 -2.3538179 -0.07160792 205s 4500 0.45366888 -2.8425735 0.24841497 -2.391173 0.11913846 205s 5000 0.4311204 -2.8002159 0.22949783 -2.3712511 0.23492578 205s 5500 0.44426372 -2.7935996 0.21466537 -2.3515572 0.16360579 205s 6000 0.43178553 -2.7534884 0.19794383 -2.3238618 -0.16038048 205s 6500 0.4124462 -2.7482024 0.21992912 -2.3378185 -0.18038226 205s 7000 0.41507218 -2.7528753 0.21771614 -2.3398785 -0.062657125 205s 7500 0.45230794 -2.7783727 0.21423215 -2.3283263 -0.044538456 205s 8000 0.42726335 -2.7931306 0.26364827 -2.3680036 -0.24929222 205s 8500 0.41614819 -2.7456553 0.23149494 -2.3315878 0.059511435 205s 9000 0.46797377 -2.791191 0.21950369 -2.3255571 -0.094337938 205s 9500 0.44990418 -2.7984325 0.24896606 -2.3507778 -0.34897551 205s 10000 0.45951563 -2.7688659 0.21262443 -2.3116478 -0.29263014 205s Loop time of 1.27154 on 1 procs for 10000 steps with 200 atoms 205s 205s Performance: 3397455.568 tau/day, 7864.480 timesteps/s, 1.573 Matom-step/s 205s 57.4% CPU use with 1 MPI tasks x 1 OpenMP threads 205s 205s MPI task timing breakdown: 205s Section | min time | avg time | max time |%varavg| %total 205s --------------------------------------------------------------- 205s Pair | 1.0429 | 1.0429 | 1.0429 | 0.0 | 82.02 205s Neigh | 0.042571 | 0.042571 | 0.042571 | 0.0 | 3.35 205s Comm | 0.065008 | 0.065008 | 0.065008 | 0.0 | 5.11 205s Output | 0.00060834 | 0.00060834 | 0.00060834 | 0.0 | 0.05 205s Modify | 0.093138 | 0.093138 | 0.093138 | 0.0 | 7.32 205s Other | | 0.02729 | | | 2.15 205s 205s Nlocal: 200 ave 200 max 200 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s Nghost: 146 ave 146 max 146 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s Neighs: 1608 ave 1608 max 1608 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s 205s Total # of neighbors = 1608 205s Ave neighs/atom = 8.04 205s Neighbor list builds = 685 205s Dangerous builds = 0 205s Total wall time: 0:00:01 205s run: OK 205s autopkgtest [09:27:43]: test dipole: -----------------------] 206s autopkgtest [09:27:44]: test dipole: - - - - - - - - - - results - - - - - - - - - - 206s dipole PASS 206s autopkgtest [09:27:44]: test ellipse: preparing testbed 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 207s Starting 2 pkgProblemResolver with broken count: 0 207s Done 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 208s autopkgtest [09:27:46]: test ellipse: [----------------------- 208s LAMMPS (7 Feb 2024 - Update 1) 208s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 208s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 208s using 1 OpenMP thread(s) per MPI task 208s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 208s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 208s 2 by 1 by 1 MPI processor grid 208s Created 400 atoms 208s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 208s create_atoms CPU = 0.000 seconds 208s Setting atom values ... 208s 48 settings made for type/fraction 208s Setting atom values ... 208s 352 settings made for mass 208s Setting atom values ... 208s 48 settings made for mass 208s Setting atom values ... 208s 352 settings made for shape 208s Setting atom values ... 208s 48 settings made for shape 208s Setting atom values ... 208s 400 settings made for quat/random 208s 352 atoms in group spheroid 208s 208s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 208s 208s Your simulation uses code contributions which should be cited: 208s - pair gayberne command: doi:10.1063/1.3058435 208s The log file lists these citations in BibTeX format. 208s 208s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 208s 208s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 208s Neighbor list info ... 208s update: every = 1 steps, delay = 0 steps, check = yes 208s max neighbors/atom: 2000, page size: 100000 208s master list distance cutoff = 4.8 208s ghost atom cutoff = 4.8 208s binsize = 2.4, bins = 59 59 3 208s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 208s (1) pair gayberne, perpetual 208s attributes: half, newton on 208s pair build: half/bin/atomonly/newton 208s stencil: half/bin/2d 208s bin: standard 208s Setting up Verlet run ... 208s Unit style : lj 208s Current step : 0 208s Time step : 0.002 208s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 208s Step c_rot E_pair TotEng Press Volume 208s 0 2.2638298 0 2.394 0.04788 20000 208s 100 1.7507088 0 1.8513745 0.036020794 20558.953 208s 200 2.2704785 0 2.401031 0.046552815 20630.598 208s 300 1.862122 0 1.969194 0.042610426 18485.56 208s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 208s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 208s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 208s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 208s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 208s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 208s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 208s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 208s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 208s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 208s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 208s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 208s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 208s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 208s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 208s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 209s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 209s Loop time of 0.526523 on 2 procs for 2000 steps with 400 atoms 209s 209s Performance: 656381.250 tau/day, 3798.503 timesteps/s, 1.519 Matom-step/s 209s 95.5% CPU use with 2 MPI tasks x 1 OpenMP threads 209s 209s MPI task timing breakdown: 209s Section | min time | avg time | max time |%varavg| %total 209s --------------------------------------------------------------- 209s Pair | 0.33984 | 0.34607 | 0.3523 | 1.1 | 65.73 209s Neigh | 0.010929 | 0.011675 | 0.01242 | 0.7 | 2.22 209s Comm | 0.046048 | 0.052944 | 0.059841 | 3.0 | 10.06 209s Output | 0.011908 | 0.011977 | 0.012046 | 0.1 | 2.27 209s Modify | 0.09275 | 0.096205 | 0.099661 | 1.1 | 18.27 209s Other | | 0.007654 | | | 1.45 209s 209s Nlocal: 200 ave 227 max 173 min 209s Histogram: 1 0 0 0 0 0 0 0 0 1 209s Nghost: 204 ave 206 max 202 min 209s Histogram: 1 0 0 0 0 0 0 0 0 1 209s Neighs: 1479.5 ave 1784 max 1175 min 209s Histogram: 1 0 0 0 0 0 0 0 0 1 209s 209s Total # of neighbors = 2959 209s Ave neighs/atom = 7.3975 209s Neighbor list builds = 348 209s Dangerous builds = 0 209s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 209s Setting up Verlet run ... 209s Unit style : lj 209s Current step : 2000 209s Time step : 0.002 209s Per MPI rank memory allocation (min/avg/max) = 6.9 | 6.9 | 6.9 Mbytes 209s Step c_rot E_pair TotEng Press Volume 209s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 209s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 209s 2200 1.9590367 -3.3182662 -1.3678333 0.35910433 1149.0282 209s 2300 2.0250309 -3.3891121 -1.3644964 0.46285769 1149.0282 209s 2400 2.085533 -3.4551199 -1.3401904 0.61189864 1149.0282 209s 2500 2.077574 -3.4482359 -1.3340251 1.0190852 1149.0282 209s 2600 2.0840722 -3.4558292 -1.3514352 0.7597702 1149.0282 209s 2700 2.1174248 -3.4915978 -1.3720622 0.82088405 1149.0282 210s 2800 2.0120484 -3.3803498 -1.3351386 1.0472272 1149.0282 210s 2900 2.095772 -3.4692917 -1.3762115 0.6503267 1149.0282 210s 3000 2.005185 -3.3743963 -1.3771538 0.74858505 1149.0282 210s 3100 2.0635196 -3.4375558 -1.3792354 0.72379626 1149.0282 210s 3200 2.0131468 -3.3825952 -1.3703433 1.1087307 1149.0282 210s 3300 2.0467878 -3.4185419 -1.3532024 0.7400243 1149.0282 210s 3400 1.9629403 -3.328306 -1.3871127 0.78865882 1149.0282 210s 3500 2.0576813 -3.4288036 -1.3361687 0.72305492 1149.0282 210s 3600 1.9638286 -3.3256476 -1.3663274 0.83792378 1149.0282 210s 3700 1.9900562 -3.3535764 -1.3259922 0.4389563 1149.0282 210s 3800 1.9016735 -3.2598525 -1.3493967 0.56256005 1149.0282 210s 3900 2.002131 -3.3658151 -1.3768647 0.59924524 1149.0282 210s 4000 1.9750784 -3.33731 -1.3724406 0.70702486 1149.0282 210s Loop time of 1.43053 on 2 procs for 2000 steps with 400 atoms 210s 210s Performance: 241588.159 tau/day, 1398.080 timesteps/s, 559.232 katom-step/s 210s 59.5% CPU use with 2 MPI tasks x 1 OpenMP threads 210s 210s MPI task timing breakdown: 210s Section | min time | avg time | max time |%varavg| %total 210s --------------------------------------------------------------- 210s Pair | 0.3241 | 0.52101 | 0.71792 | 27.3 | 36.42 210s Neigh | 0.0021576 | 0.0029712 | 0.0037847 | 1.5 | 0.21 210s Comm | 0.43352 | 0.67825 | 0.92299 | 29.7 | 47.41 210s Output | 0.043688 | 0.043739 | 0.04379 | 0.0 | 3.06 210s Modify | 0.075134 | 0.093393 | 0.11165 | 6.0 | 6.53 210s Other | | 0.09117 | | | 6.37 210s 210s Nlocal: 200 ave 242 max 158 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s Nghost: 186 ave 206 max 166 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s Neighs: 1548.5 ave 2045 max 1052 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s 210s Total # of neighbors = 3097 210s Ave neighs/atom = 7.7425 210s Neighbor list builds = 48 210s Dangerous builds = 0 210s Total wall time: 0:00:01 210s LAMMPS (7 Feb 2024 - Update 1) 212s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 212s using 1 OpenMP thread(s) per MPI task 212s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 212s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 212s 1 by 1 by 1 MPI processor grid 212s Created 400 atoms 212s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 212s create_atoms CPU = 0.000 seconds 212s Setting atom values ... 212s 48 settings made for type/fraction 212s Setting atom values ... 212s 352 settings made for mass 212s Setting atom values ... 212s 48 settings made for mass 212s Setting atom values ... 212s 352 settings made for shape 212s Setting atom values ... 212s 48 settings made for shape 212s Setting atom values ... 212s 400 settings made for quat/random 212s 352 atoms in group spheroid 212s 212s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 212s 212s Your simulation uses code contributions which should be cited: 212s - pair gayberne command: doi:10.1063/1.3058435 212s The log file lists these citations in BibTeX format. 212s 212s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 212s 212s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 212s Neighbor list info ... 212s update: every = 1 steps, delay = 0 steps, check = yes 212s max neighbors/atom: 2000, page size: 100000 212s master list distance cutoff = 4.8 212s ghost atom cutoff = 4.8 212s binsize = 2.4, bins = 59 59 3 212s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 212s (1) pair gayberne, perpetual 212s attributes: half, newton on 212s pair build: half/bin/atomonly/newton 212s stencil: half/bin/2d 212s bin: standard 212s Setting up Verlet run ... 212s Unit style : lj 212s Current step : 0 212s Time step : 0.002 212s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 212s Step c_rot E_pair TotEng Press Volume 212s 0 2.2638298 0 2.394 0.04788 20000 212s 100 1.7507088 0 1.8513745 0.036020794 20558.953 212s 200 2.2704785 0 2.401031 0.046552815 20630.598 212s 300 1.862122 0 1.969194 0.042610426 18485.56 212s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 212s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 212s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 212s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 212s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 212s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 212s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 212s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 212s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 212s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 212s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 212s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 212s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 212s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 212s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 212s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 212s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 212s Loop time of 1.45446 on 1 procs for 2000 steps with 400 atoms 212s 212s Performance: 237613.361 tau/day, 1375.077 timesteps/s, 550.031 katom-step/s 212s 61.3% CPU use with 1 MPI tasks x 1 OpenMP threads 212s 212s MPI task timing breakdown: 212s Section | min time | avg time | max time |%varavg| %total 212s --------------------------------------------------------------- 212s Pair | 1.1484 | 1.1484 | 1.1484 | 0.0 | 78.95 213s Neigh | 0.022145 | 0.022145 | 0.022145 | 0.0 | 1.52 213s Comm | 0.024453 | 0.024453 | 0.024453 | 0.0 | 1.68 213s Output | 0.020551 | 0.020551 | 0.020551 | 0.0 | 1.41 213s Modify | 0.23396 | 0.23396 | 0.23396 | 0.0 | 16.09 213s Other | | 0.004988 | | | 0.34 213s 213s Nlocal: 400 ave 400 max 400 min 213s Histogram: 1 0 0 0 0 0 0 0 0 0 213s Nghost: 255 ave 255 max 255 min 213s Histogram: 1 0 0 0 0 0 0 0 0 0 213s Neighs: 2959 ave 2959 max 2959 min 213s Histogram: 1 0 0 0 0 0 0 0 0 0 213s 213s Total # of neighbors = 2959 213s Ave neighs/atom = 7.3975 213s Neighbor list builds = 348 213s Dangerous builds = 0 213s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 213s Setting up Verlet run ... 213s Unit style : lj 213s Current step : 2000 213s Time step : 0.002 213s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 213s Step c_rot E_pair TotEng Press Volume 213s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 213s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 213s 2200 1.9590368 -3.3182663 -1.3678333 0.35910425 1149.0282 213s 2300 2.0250308 -3.3891119 -1.3644964 0.46285779 1149.0282 213s 2400 2.0855331 -3.45512 -1.3401904 0.61189841 1149.0282 213s 2500 2.0775737 -3.4482356 -1.3340258 1.0190836 1149.0282 213s 2600 2.084072 -3.4558289 -1.3514359 0.75976918 1149.0282 213s 2700 2.1174308 -3.4916046 -1.3720664 0.82086811 1149.0282 213s 2800 2.0120441 -3.3803491 -1.3351469 1.047208 1149.0282 213s 2900 2.0957766 -3.4692999 -1.376208 0.65043335 1149.0282 213s 3000 2.00512 -3.3743288 -1.3771585 0.7487656 1149.0282 213s 3100 2.0635277 -3.4376031 -1.3792202 0.72375619 1149.0282 213s 3200 2.0130716 -3.3825107 -1.3702334 1.1098674 1149.0282 213s 3300 2.0463568 -3.4179583 -1.3534773 0.73871011 1149.0282 213s 3400 1.9649348 -3.3304023 -1.3860539 0.77548498 1149.0282 213s 3500 2.0501941 -3.4213612 -1.3373407 0.73278199 1149.0282 213s 3600 1.9881829 -3.3519947 -1.3795107 0.73402726 1149.0282 213s 3700 1.9994085 -3.3655341 -1.3599281 0.3911747 1149.0282 213s 3800 1.963869 -3.3264036 -1.3599099 0.50519594 1149.0282 213s 3900 1.9970107 -3.3624111 -1.3743885 1.0960718 1149.0282 213s 4000 2.0620245 -3.4315752 -1.3998675 0.54966642 1149.0282 213s Loop time of 1.12005 on 1 procs for 2000 steps with 400 atoms 213s 213s Performance: 308557.699 tau/day, 1785.635 timesteps/s, 714.254 katom-step/s 213s 88.2% CPU use with 1 MPI tasks x 1 OpenMP threads 213s 213s MPI task timing breakdown: 213s Section | min time | avg time | max time |%varavg| %total 213s --------------------------------------------------------------- 213s Pair | 0.95551 | 0.95551 | 0.95551 | 0.0 | 85.31 213s Neigh | 0.0058541 | 0.0058541 | 0.0058541 | 0.0 | 0.52 213s Comm | 0.0090282 | 0.0090282 | 0.0090282 | 0.0 | 0.81 213s Output | 0.021901 | 0.021901 | 0.021901 | 0.0 | 1.96 213s Modify | 0.12333 | 0.12333 | 0.12333 | 0.0 | 11.01 213s Other | | 0.004424 | | | 0.40 213s 213s Nlocal: 400 ave 400 max 400 min 213s Histogram: 1 0 0 0 0 0 0 0 0 0 213s Nghost: 240 ave 240 max 240 min 213s Histogram: 1 0 0 0 0 0 0 0 0 0 213s Neighs: 3096 ave 3096 max 3096 min 213s Histogram: 1 0 0 0 0 0 0 0 0 0 213s 213s Total # of neighbors = 3096 213s Ave neighs/atom = 7.74 213s Neighbor list builds = 49 213s Dangerous builds = 0 213s Total wall time: 0:00:02 213s LAMMPS (7 Feb 2024 - Update 1) 213s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 213s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 213s using 1 OpenMP thread(s) per MPI task 213s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 213s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 213s 2 by 1 by 1 MPI processor grid 213s Created 400 atoms 213s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 213s create_atoms CPU = 0.002 seconds 213s Setting atom values ... 213s 48 settings made for type/fraction 213s Setting atom values ... 213s 352 settings made for mass 213s Setting atom values ... 213s 48 settings made for mass 213s Setting atom values ... 213s 352 settings made for shape 213s Setting atom values ... 213s 48 settings made for shape 213s Setting atom values ... 213s 400 settings made for quat/random 213s 352 atoms in group spheroid 213s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 213s Neighbor list info ... 213s update: every = 1 steps, delay = 0 steps, check = yes 213s max neighbors/atom: 2000, page size: 100000 213s master list distance cutoff = 4.8 213s ghost atom cutoff = 4.8 213s binsize = 2.4, bins = 59 59 3 213s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 213s (1) pair resquared, perpetual 213s attributes: half, newton on 213s pair build: half/bin/atomonly/newton 213s stencil: half/bin/2d 213s bin: standard 213s Setting up Verlet run ... 213s Unit style : lj 213s Current step : 0 213s Time step : 0.002 213s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 213s Step c_rot E_pair TotEng Press Volume 213s 0 2.2638298 0 2.394 0.04788 20000 213s 100 1.7507088 0 1.8513745 0.036020794 20558.953 213s 200 2.2704785 0 2.401031 0.046552815 20630.598 213s 300 1.862122 0 1.969194 0.042610426 18485.56 213s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 213s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 213s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 213s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 213s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 214s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 214s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 214s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 214s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 214s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 214s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 214s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 214s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 215s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 215s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 215s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 215s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 215s Loop time of 1.79799 on 2 procs for 2000 steps with 400 atoms 215s 215s Performance: 192214.532 tau/day, 1112.353 timesteps/s, 444.941 katom-step/s 215s 64.8% CPU use with 2 MPI tasks x 1 OpenMP threads 215s 215s MPI task timing breakdown: 215s Section | min time | avg time | max time |%varavg| %total 215s --------------------------------------------------------------- 215s Pair | 0.84174 | 0.8724 | 0.90306 | 3.3 | 48.52 215s Neigh | 0.018277 | 0.021797 | 0.025317 | 2.4 | 1.21 215s Comm | 0.49641 | 0.52377 | 0.55114 | 3.8 | 29.13 215s Output | 0.086929 | 0.087032 | 0.087134 | 0.0 | 4.84 215s Modify | 0.19832 | 0.22115 | 0.24398 | 4.9 | 12.30 215s Other | | 0.07184 | | | 4.00 215s 215s Nlocal: 200 ave 206 max 194 min 215s Histogram: 1 0 0 0 0 0 0 0 0 1 215s Nghost: 166 ave 172 max 160 min 215s Histogram: 1 0 0 0 0 0 0 0 0 1 215s Neighs: 990.5 ave 1028 max 953 min 215s Histogram: 1 0 0 0 0 0 0 0 0 1 215s 215s Total # of neighbors = 1981 215s Ave neighs/atom = 4.9525 215s Neighbor list builds = 410 215s Dangerous builds = 0 215s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 215s Setting up Verlet run ... 215s Unit style : lj 215s Current step : 2000 215s Time step : 0.002 215s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 215s Step c_rot E_pair TotEng Press Volume 215s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 215s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 215s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 215s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 216s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 216s 2500 2.1396456 0.25118294 2.3450649 1.7231479 1625.5704 216s 2600 2.1724989 0.21652796 2.36624 1.5785682 1625.5704 216s 2700 2.1347133 0.2565462 2.3819962 1.7939756 1625.5704 216s 2800 2.2187273 0.16767707 2.3890091 1.3803388 1625.5704 216s 2900 2.2653117 0.11841424 2.358481 1.1423479 1625.5704 216s 3000 2.1965681 0.19125616 2.3687823 1.55014 1625.5704 217s 3100 2.1970501 0.19052613 2.3694703 1.4706426 1625.5704 217s 3200 2.1661439 0.22324214 2.3939177 1.619691 1625.5704 217s 3300 2.1298288 0.26157991 2.3997036 1.8700501 1625.5704 217s 3400 2.1293647 0.26220526 2.373699 1.7332686 1625.5704 217s 3500 2.1835494 0.20483304 2.4031724 1.5471088 1625.5704 217s 3600 2.1875445 0.20049079 2.4159533 1.5995253 1625.5704 218s 3700 2.1186666 0.27351639 2.4141913 1.9057949 1625.5704 218s 3800 2.1752149 0.2136072 2.3067948 1.5705518 1625.5704 218s 3900 2.1976482 0.18993383 2.4017837 1.4844827 1625.5704 218s 4000 2.1788977 0.20960933 2.3437572 1.576965 1625.5704 218s Loop time of 3.21826 on 2 procs for 2000 steps with 400 atoms 218s 218s Performance: 107387.257 tau/day, 621.454 timesteps/s, 248.582 katom-step/s 218s 68.5% CPU use with 2 MPI tasks x 1 OpenMP threads 218s 218s MPI task timing breakdown: 218s Section | min time | avg time | max time |%varavg| %total 218s --------------------------------------------------------------- 218s Pair | 1.6496 | 1.9393 | 2.2289 | 20.8 | 60.26 218s Neigh | 0.0026657 | 0.0035249 | 0.004384 | 1.4 | 0.11 218s Comm | 0.73315 | 1.0227 | 1.3123 | 28.6 | 31.78 218s Output | 0.042838 | 0.043479 | 0.04412 | 0.3 | 1.35 218s Modify | 0.12049 | 0.12398 | 0.12747 | 1.0 | 3.85 218s Other | | 0.08528 | | | 2.65 218s 218s Nlocal: 200 ave 207 max 193 min 218s Histogram: 1 0 0 0 0 0 0 0 0 1 218s Nghost: 162.5 ave 165 max 160 min 218s Histogram: 1 0 0 0 0 0 0 0 0 1 218s Neighs: 966 ave 1009 max 923 min 218s Histogram: 1 0 0 0 0 0 0 0 0 1 218s 218s Total # of neighbors = 1932 218s Ave neighs/atom = 4.83 218s Neighbor list builds = 50 218s Dangerous builds = 0 218s Total wall time: 0:00:05 218s LAMMPS (7 Feb 2024 - Update 1) 220s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 220s using 1 OpenMP thread(s) per MPI task 220s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 220s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 220s 1 by 1 by 1 MPI processor grid 220s Created 400 atoms 220s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 220s create_atoms CPU = 0.000 seconds 220s Setting atom values ... 220s 48 settings made for type/fraction 220s Setting atom values ... 220s 352 settings made for mass 220s Setting atom values ... 220s 48 settings made for mass 220s Setting atom values ... 220s 352 settings made for shape 220s Setting atom values ... 220s 48 settings made for shape 220s Setting atom values ... 220s 400 settings made for quat/random 220s 352 atoms in group spheroid 220s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 220s Neighbor list info ... 220s update: every = 1 steps, delay = 0 steps, check = yes 220s max neighbors/atom: 2000, page size: 100000 220s master list distance cutoff = 4.8 220s ghost atom cutoff = 4.8 220s binsize = 2.4, bins = 59 59 3 220s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 220s (1) pair resquared, perpetual 220s attributes: half, newton on 220s pair build: half/bin/atomonly/newton 220s stencil: half/bin/2d 220s bin: standard 220s Setting up Verlet run ... 220s Unit style : lj 220s Current step : 0 220s Time step : 0.002 220s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 220s Step c_rot E_pair TotEng Press Volume 220s 0 2.2638298 0 2.394 0.04788 20000 220s 100 1.7507088 0 1.8513745 0.036020794 20558.953 220s 200 2.2704785 0 2.401031 0.046552815 20630.598 220s 300 1.862122 0 1.969194 0.042610426 18485.56 220s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 220s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 220s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 220s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 220s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 220s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 220s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 220s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 220s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 220s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 220s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 220s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 220s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 220s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 220s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 220s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 220s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 220s Loop time of 1.84282 on 1 procs for 2000 steps with 400 atoms 220s 220s Performance: 187538.753 tau/day, 1085.294 timesteps/s, 434.117 katom-step/s 220s 78.3% CPU use with 1 MPI tasks x 1 OpenMP threads 220s 220s MPI task timing breakdown: 220s Section | min time | avg time | max time |%varavg| %total 220s --------------------------------------------------------------- 220s Pair | 1.5156 | 1.5156 | 1.5156 | 0.0 | 82.25 220s Neigh | 0.031221 | 0.031221 | 0.031221 | 0.0 | 1.69 220s Comm | 0.011593 | 0.011593 | 0.011593 | 0.0 | 0.63 220s Output | 0.028076 | 0.028076 | 0.028076 | 0.0 | 1.52 220s Modify | 0.24545 | 0.24545 | 0.24545 | 0.0 | 13.32 224s Other | | 0.01085 | | | 0.59 224s 224s Nlocal: 400 ave 400 max 400 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s Nghost: 214 ave 214 max 214 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s Neighs: 1981 ave 1981 max 1981 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s 224s Total # of neighbors = 1981 224s Ave neighs/atom = 4.9525 224s Neighbor list builds = 410 224s Dangerous builds = 0 224s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 224s Setting up Verlet run ... 224s Unit style : lj 224s Current step : 2000 224s Time step : 0.002 224s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 224s Step c_rot E_pair TotEng Press Volume 224s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 224s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 224s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 224s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 224s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 224s 2500 2.1396456 0.25118295 2.3450649 1.7231479 1625.5704 224s 2600 2.1724989 0.21652796 2.3662399 1.5785682 1625.5704 224s 2700 2.1347133 0.25654622 2.3819962 1.7939757 1625.5704 224s 2800 2.2187273 0.16767709 2.3890091 1.3803389 1625.5704 224s 2900 2.2653117 0.1184142 2.3584809 1.1423477 1625.5704 224s 3000 2.1965682 0.19125607 2.3687823 1.5501394 1625.5704 224s 3100 2.1970503 0.19052592 2.3694702 1.4706415 1625.5704 224s 3200 2.1661438 0.22324217 2.393918 1.619691 1625.5704 224s 3300 2.1298268 0.26158212 2.3997056 1.8700704 1625.5704 224s 3400 2.129366 0.26220387 2.3736989 1.7332623 1625.5704 224s 3500 2.1835467 0.20483593 2.4031735 1.5471227 1625.5704 224s 3600 2.187532 0.20050401 2.4159602 1.5996363 1625.5704 224s 3700 2.1186808 0.2735013 2.4141937 1.9057216 1625.5704 224s 3800 2.1752481 0.21357202 2.3067618 1.5703983 1625.5704 224s 3900 2.1976728 0.18990792 2.4017814 1.4843601 1625.5704 224s 4000 2.1786303 0.20989248 2.3438733 1.578595 1625.5704 224s Loop time of 4.08679 on 1 procs for 2000 steps with 400 atoms 224s 224s Performance: 84565.141 tau/day, 489.382 timesteps/s, 195.753 katom-step/s 224s 63.0% CPU use with 1 MPI tasks x 1 OpenMP threads 224s 224s MPI task timing breakdown: 224s Section | min time | avg time | max time |%varavg| %total 224s --------------------------------------------------------------- 224s Pair | 3.7787 | 3.7787 | 3.7787 | 0.0 | 92.46 224s Neigh | 0.0096777 | 0.0096777 | 0.0096777 | 0.0 | 0.24 224s Comm | 0.019073 | 0.019073 | 0.019073 | 0.0 | 0.47 224s Output | 0.030342 | 0.030342 | 0.030342 | 0.0 | 0.74 224s Modify | 0.23822 | 0.23822 | 0.23822 | 0.0 | 5.83 224s Other | | 0.01076 | | | 0.26 224s 224s Nlocal: 400 ave 400 max 400 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s Nghost: 208 ave 208 max 208 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s Neighs: 1932 ave 1932 max 1932 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s 224s Total # of neighbors = 1932 224s Ave neighs/atom = 4.83 224s Neighbor list builds = 50 224s Dangerous builds = 0 224s Total wall time: 0:00:05 224s run: OK 225s autopkgtest [09:28:03]: test ellipse: -----------------------] 225s autopkgtest [09:28:03]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 225s ellipse PASS 226s autopkgtest [09:28:04]: test flow: preparing testbed 226s Reading package lists... 226s Building dependency tree... 226s Reading state information... 226s Starting pkgProblemResolver with broken count: 0 226s Starting 2 pkgProblemResolver with broken count: 0 226s Done 226s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 228s autopkgtest [09:28:06]: test flow: [----------------------- 228s LAMMPS (7 Feb 2024 - Update 1) 228s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 228s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 228s using 1 OpenMP thread(s) per MPI task 228s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 228s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 228s 2 by 1 by 1 MPI processor grid 228s Created 420 atoms 228s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 228s create_atoms CPU = 0.000 seconds 228s 60 atoms in group lower 228s 60 atoms in group upper 228s 120 atoms in group boundary 228s 300 atoms in group flow 228s Setting atom values ... 228s 60 settings made for type 228s Setting atom values ... 228s 60 settings made for type 228s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 228s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 228s Neighbor list info ... 228s update: every = 1 steps, delay = 5 steps, check = yes 228s max neighbors/atom: 2000, page size: 100000 228s master list distance cutoff = 1.42246 228s ghost atom cutoff = 1.42246 228s binsize = 0.71123, bins = 37 32 1 228s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 228s (1) pair lj/cut, perpetual 228s attributes: half, newton on 228s pair build: half/bin/atomonly/newton 228s stencil: half/bin/2d 228s bin: standard 228s Setting up Verlet run ... 228s Unit style : lj 228s Current step : 0 228s Time step : 0.003 228s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 228s Step Temp E_pair E_mol TotEng Press Volume 228s 0 1 0 0 0.71190476 0.52314537 571.54286 228s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 228s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 228s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 228s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 228s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 228s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 228s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 228s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 228s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 228s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 228s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 228s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 228s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 228s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 228s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 228s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 228s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 228s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 228s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 228s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 228s Loop time of 0.1735 on 2 procs for 10000 steps with 420 atoms 228s 228s Performance: 14939474.207 tau/day, 57636.860 timesteps/s, 24.207 Matom-step/s 228s 97.0% CPU use with 2 MPI tasks x 1 OpenMP threads 228s 228s MPI task timing breakdown: 228s Section | min time | avg time | max time |%varavg| %total 228s --------------------------------------------------------------- 228s Pair | 0.050825 | 0.05216 | 0.053496 | 0.6 | 30.06 228s Neigh | 0.022344 | 0.023222 | 0.0241 | 0.6 | 13.38 228s Comm | 0.059888 | 0.061905 | 0.063921 | 0.8 | 35.68 228s Output | 0.00027934 | 0.00037076 | 0.00046219 | 0.0 | 0.21 228s Modify | 0.021962 | 0.022597 | 0.023231 | 0.4 | 13.02 228s Other | | 0.01325 | | | 7.63 228s 228s Nlocal: 210 ave 214 max 206 min 228s Histogram: 1 0 0 0 0 0 0 0 0 1 228s Nghost: 51 ave 52 max 50 min 228s Histogram: 1 0 0 0 0 0 0 0 0 1 228s Neighs: 472 ave 494 max 450 min 228s Histogram: 1 0 0 0 0 0 0 0 0 1 228s 228s Total # of neighbors = 944 228s Ave neighs/atom = 2.247619 228s Neighbor list builds = 994 228s Dangerous builds = 0 228s Total wall time: 0:00:00 228s LAMMPS (7 Feb 2024 - Update 1) 228s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 228s using 1 OpenMP thread(s) per MPI task 228s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 228s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 228s 1 by 1 by 1 MPI processor grid 228s Created 420 atoms 228s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 228s create_atoms CPU = 0.000 seconds 228s 60 atoms in group lower 228s 60 atoms in group upper 228s 120 atoms in group boundary 228s 300 atoms in group flow 228s Setting atom values ... 228s 60 settings made for type 228s Setting atom values ... 228s 60 settings made for type 228s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 228s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 228s Neighbor list info ... 228s update: every = 1 steps, delay = 5 steps, check = yes 228s max neighbors/atom: 2000, page size: 100000 228s master list distance cutoff = 1.42246 228s ghost atom cutoff = 1.42246 228s binsize = 0.71123, bins = 37 32 1 228s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 228s (1) pair lj/cut, perpetual 228s attributes: half, newton on 228s pair build: half/bin/atomonly/newton 228s stencil: half/bin/2d 228s bin: standard 228s Setting up Verlet run ... 228s Unit style : lj 228s Current step : 0 228s Time step : 0.003 228s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 228s Step Temp E_pair E_mol TotEng Press Volume 228s 0 1 0 0 0.71190476 0.52314537 571.54286 228s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 228s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 228s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 228s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 228s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 228s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 228s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 228s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 228s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 228s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 228s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 228s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 228s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 228s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 228s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 228s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 228s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 228s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 228s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 228s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 228s Loop time of 0.202532 on 1 procs for 10000 steps with 420 atoms 228s 228s Performance: 12797957.762 tau/day, 49374.837 timesteps/s, 20.737 Matom-step/s 228s 94.2% CPU use with 1 MPI tasks x 1 OpenMP threads 228s 228s MPI task timing breakdown: 228s Section | min time | avg time | max time |%varavg| %total 228s --------------------------------------------------------------- 228s Pair | 0.10031 | 0.10031 | 0.10031 | 0.0 | 49.53 228s Neigh | 0.04376 | 0.04376 | 0.04376 | 0.0 | 21.61 228s Comm | 0.0047201 | 0.0047201 | 0.0047201 | 0.0 | 2.33 228s Output | 0.00019412 | 0.00019412 | 0.00019412 | 0.0 | 0.10 228s Modify | 0.042604 | 0.042604 | 0.042604 | 0.0 | 21.04 228s Other | | 0.01094 | | | 5.40 228s 228s Nlocal: 420 ave 420 max 420 min 228s Histogram: 1 0 0 0 0 0 0 0 0 0 228s Nghost: 50 ave 50 max 50 min 228s Histogram: 1 0 0 0 0 0 0 0 0 0 228s Neighs: 946 ave 946 max 946 min 228s Histogram: 1 0 0 0 0 0 0 0 0 0 228s 228s Total # of neighbors = 946 228s Ave neighs/atom = 2.252381 228s Neighbor list builds = 979 228s Dangerous builds = 0 228s Total wall time: 0:00:00 229s LAMMPS (7 Feb 2024 - Update 1) 229s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 229s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 229s using 1 OpenMP thread(s) per MPI task 229s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 229s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 229s 2 by 1 by 1 MPI processor grid 229s Created 420 atoms 229s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 229s create_atoms CPU = 0.000 seconds 229s 60 atoms in group lower 229s 60 atoms in group upper 229s 120 atoms in group boundary 229s 300 atoms in group flow 229s Setting atom values ... 229s 60 settings made for type 229s Setting atom values ... 229s 60 settings made for type 229s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 229s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 229s Neighbor list info ... 229s update: every = 1 steps, delay = 5 steps, check = yes 229s max neighbors/atom: 2000, page size: 100000 229s master list distance cutoff = 1.42246 229s ghost atom cutoff = 1.42246 229s binsize = 0.71123, bins = 37 32 1 229s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 229s (1) pair lj/cut, perpetual 229s attributes: half, newton on 229s pair build: half/bin/atomonly/newton 229s stencil: half/bin/2d 229s bin: standard 229s Setting up Verlet run ... 229s Unit style : lj 229s Current step : 0 229s Time step : 0.003 229s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 229s Step Temp E_pair E_mol TotEng Press Volume 229s 0 1 0 0 0.71190476 0.52314537 571.54286 229s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 229s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 229s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 229s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 229s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 229s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 229s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 229s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 229s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 229s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 229s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 229s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 229s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 229s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 229s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 229s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 229s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 229s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 229s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 229s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 229s Loop time of 0.167341 on 2 procs for 10000 steps with 420 atoms 229s 229s Performance: 15489305.364 tau/day, 59758.123 timesteps/s, 25.098 Matom-step/s 229s 97.5% CPU use with 2 MPI tasks x 1 OpenMP threads 229s 229s MPI task timing breakdown: 229s Section | min time | avg time | max time |%varavg| %total 229s --------------------------------------------------------------- 229s Pair | 0.055935 | 0.056838 | 0.057741 | 0.4 | 33.97 229s Neigh | 0.013394 | 0.013413 | 0.013433 | 0.0 | 8.02 229s Comm | 0.038236 | 0.03909 | 0.039944 | 0.4 | 23.36 229s Output | 0.00016235 | 0.00028887 | 0.0004154 | 0.0 | 0.17 229s Modify | 0.047512 | 0.047613 | 0.047714 | 0.0 | 28.45 229s Other | | 0.0101 | | | 6.03 229s 229s Nlocal: 210 ave 211 max 209 min 229s Histogram: 1 0 0 0 0 0 0 0 0 1 229s Nghost: 50 ave 51 max 49 min 229s Histogram: 1 0 0 0 0 0 0 0 0 1 229s Neighs: 563.5 ave 569 max 558 min 229s Histogram: 1 0 0 0 0 0 0 0 0 1 229s 229s Total # of neighbors = 1127 229s Ave neighs/atom = 2.6833333 229s Neighbor list builds = 560 229s Dangerous builds = 0 229s Total wall time: 0:00:00 229s LAMMPS (7 Feb 2024 - Update 1) 229s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 229s using 1 OpenMP thread(s) per MPI task 229s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 229s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 229s 1 by 1 by 1 MPI processor grid 229s Created 420 atoms 229s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 229s create_atoms CPU = 0.000 seconds 229s 60 atoms in group lower 229s 60 atoms in group upper 229s 120 atoms in group boundary 229s 300 atoms in group flow 229s Setting atom values ... 229s 60 settings made for type 229s Setting atom values ... 229s 60 settings made for type 229s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 229s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 229s Neighbor list info ... 229s update: every = 1 steps, delay = 5 steps, check = yes 229s max neighbors/atom: 2000, page size: 100000 229s master list distance cutoff = 1.42246 229s ghost atom cutoff = 1.42246 229s binsize = 0.71123, bins = 37 32 1 229s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 229s (1) pair lj/cut, perpetual 229s attributes: half, newton on 229s pair build: half/bin/atomonly/newton 229s stencil: half/bin/2d 229s bin: standard 229s Setting up Verlet run ... 229s Unit style : lj 229s Current step : 0 229s Time step : 0.003 229s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 229s Step Temp E_pair E_mol TotEng Press Volume 229s 0 1 0 0 0.71190476 0.52314537 571.54286 229s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 229s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 229s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 229s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 229s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 229s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 229s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 229s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 229s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 229s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 229s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 229s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 229s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 229s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 229s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 229s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 229s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 229s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 229s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 229s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 229s Loop time of 0.236144 on 1 procs for 10000 steps with 420 atoms 229s 229s Performance: 10976336.585 tau/day, 42346.978 timesteps/s, 17.786 Matom-step/s 229s 98.2% CPU use with 1 MPI tasks x 1 OpenMP threads 229s 229s MPI task timing breakdown: 229s Section | min time | avg time | max time |%varavg| %total 229s --------------------------------------------------------------- 229s Pair | 0.11216 | 0.11216 | 0.11216 | 0.0 | 47.50 229s Neigh | 0.025907 | 0.025907 | 0.025907 | 0.0 | 10.97 229s Comm | 0.0041704 | 0.0041704 | 0.0041704 | 0.0 | 1.77 229s Output | 0.00023428 | 0.00023428 | 0.00023428 | 0.0 | 0.10 229s Modify | 0.082637 | 0.082637 | 0.082637 | 0.0 | 34.99 229s Other | | 0.01103 | | | 4.67 229s 229s Nlocal: 420 ave 420 max 420 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s Nghost: 51 ave 51 max 51 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s Neighs: 1150 ave 1150 max 1150 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s 229s Total # of neighbors = 1150 229s Ave neighs/atom = 2.7380952 229s Neighbor list builds = 563 229s Dangerous builds = 0 229s Total wall time: 0:00:00 229s run: OK 229s autopkgtest [09:28:07]: test flow: -----------------------] 230s flow PASS 230s autopkgtest [09:28:08]: test flow: - - - - - - - - - - results - - - - - - - - - - 230s autopkgtest [09:28:08]: test friction: preparing testbed 230s Reading package lists... 231s Building dependency tree... 231s Reading state information... 231s Starting pkgProblemResolver with broken count: 0 231s Starting 2 pkgProblemResolver with broken count: 0 231s Done 231s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 232s autopkgtest [09:28:10]: test friction: [----------------------- 232s LAMMPS (7 Feb 2024 - Update 1) 232s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 232s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 232s using 1 OpenMP thread(s) per MPI task 232s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 232s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 232s 2 by 1 by 1 MPI processor grid 232s Created 750 atoms 232s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 232s create_atoms CPU = 0.000 seconds 232s Created 750 atoms 232s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 232s create_atoms CPU = 0.000 seconds 232s Created 112 atoms 232s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 232s create_atoms CPU = 0.000 seconds 232s Created 112 atoms 232s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 232s create_atoms CPU = 0.000 seconds 232s 750 atoms in group lo 232s 862 atoms in group lo 232s 750 atoms in group hi 232s 862 atoms in group hi 232s 150 atoms in group lo-fixed 232s 150 atoms in group hi-fixed 232s 300 atoms in group boundary 232s 1424 atoms in group mobile 232s Setting atom values ... 232s 150 settings made for type 232s Setting atom values ... 232s 150 settings made for type 232s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 232s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 232s Neighbor list info ... 232s update: every = 1 steps, delay = 5 steps, check = yes 232s max neighbors/atom: 2000, page size: 100000 232s master list distance cutoff = 2.8 232s ghost atom cutoff = 2.8 232s binsize = 1.4, bins = 41 31 1 232s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 232s (1) pair lj/cut, perpetual 232s attributes: half, newton on 232s pair build: half/bin/atomonly/newton 232s stencil: half/bin/2d 232s bin: standard 232s Setting up Verlet run ... 232s Unit style : lj 232s Current step : 0 232s Time step : 0.0025 232s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 232s Step Temp E_pair E_mol TotEng Press Volume 232s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 232s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 232s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 232s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 233s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 233s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 233s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 234s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 234s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 234s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 234s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 234s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 235s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 235s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 235s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 235s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 235s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 236s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 236s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 236s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 236s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 236s Loop time of 4.25882 on 2 procs for 20000 steps with 1724 atoms 236s 236s Performance: 1014365.177 tau/day, 4696.135 timesteps/s, 8.096 Matom-step/s 236s 74.2% CPU use with 2 MPI tasks x 1 OpenMP threads 236s 236s MPI task timing breakdown: 236s Section | min time | avg time | max time |%varavg| %total 236s --------------------------------------------------------------- 236s Pair | 1.9279 | 2.2168 | 2.5056 | 19.4 | 52.05 236s Neigh | 0.2055 | 0.21278 | 0.22006 | 1.6 | 5.00 236s Comm | 1.1092 | 1.3109 | 1.5125 | 17.6 | 30.78 236s Output | 0.00064783 | 0.0031997 | 0.0057515 | 4.5 | 0.08 236s Modify | 0.19705 | 0.23825 | 0.27944 | 8.4 | 5.59 236s Other | | 0.277 | | | 6.50 236s 236s Nlocal: 862 ave 874 max 850 min 236s Histogram: 1 0 0 0 0 0 0 0 0 1 236s Nghost: 165.5 ave 166 max 165 min 236s Histogram: 1 0 0 0 0 0 0 0 0 1 236s Neighs: 7198 ave 7283 max 7113 min 236s Histogram: 1 0 0 0 0 0 0 0 0 1 236s 236s Total # of neighbors = 14396 236s Ave neighs/atom = 8.350348 236s Neighbor list builds = 720 236s Dangerous builds = 0 236s Total wall time: 0:00:04 236s LAMMPS (7 Feb 2024 - Update 1) 241s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 241s using 1 OpenMP thread(s) per MPI task 241s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 241s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 241s 1 by 1 by 1 MPI processor grid 241s Created 750 atoms 241s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 241s create_atoms CPU = 0.000 seconds 241s Created 750 atoms 241s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 241s create_atoms CPU = 0.000 seconds 241s Created 112 atoms 241s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 241s create_atoms CPU = 0.000 seconds 241s Created 112 atoms 241s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 241s create_atoms CPU = 0.000 seconds 241s 750 atoms in group lo 241s 862 atoms in group lo 241s 750 atoms in group hi 241s 862 atoms in group hi 241s 150 atoms in group lo-fixed 241s 150 atoms in group hi-fixed 241s 300 atoms in group boundary 241s 1424 atoms in group mobile 241s Setting atom values ... 241s 150 settings made for type 241s Setting atom values ... 241s 150 settings made for type 241s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 241s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 241s Neighbor list info ... 241s update: every = 1 steps, delay = 5 steps, check = yes 241s max neighbors/atom: 2000, page size: 100000 241s master list distance cutoff = 2.8 241s ghost atom cutoff = 2.8 241s binsize = 1.4, bins = 41 31 1 241s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 241s (1) pair lj/cut, perpetual 241s attributes: half, newton on 241s pair build: half/bin/atomonly/newton 241s stencil: half/bin/2d 241s bin: standard 241s Setting up Verlet run ... 241s Unit style : lj 241s Current step : 0 241s Time step : 0.0025 241s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 241s Step Temp E_pair E_mol TotEng Press Volume 241s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 241s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 241s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 241s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 241s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 241s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 241s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 241s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 241s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 241s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 241s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 241s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 241s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 241s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 241s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 241s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 241s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 241s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 241s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 241s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 241s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 241s Loop time of 4.8423 on 1 procs for 20000 steps with 1724 atoms 241s 241s Performance: 892138.505 tau/day, 4130.271 timesteps/s, 7.121 Matom-step/s 241s 88.8% CPU use with 1 MPI tasks x 1 OpenMP threads 241s 241s MPI task timing breakdown: 241s Section | min time | avg time | max time |%varavg| %total 241s --------------------------------------------------------------- 241s Pair | 4.0002 | 4.0002 | 4.0002 | 0.0 | 82.61 241s Neigh | 0.30685 | 0.30685 | 0.30685 | 0.0 | 6.34 241s Comm | 0.023629 | 0.023629 | 0.023629 | 0.0 | 0.49 241s Output | 0.0010656 | 0.0010656 | 0.0010656 | 0.0 | 0.02 241s Modify | 0.40621 | 0.40621 | 0.40621 | 0.0 | 8.39 241s Other | | 0.1043 | | | 2.15 241s 241s Nlocal: 1724 ave 1724 max 1724 min 241s Histogram: 1 0 0 0 0 0 0 0 0 0 241s Nghost: 145 ave 145 max 145 min 241s Histogram: 1 0 0 0 0 0 0 0 0 0 241s Neighs: 14397 ave 14397 max 14397 min 241s Histogram: 1 0 0 0 0 0 0 0 0 0 241s 241s Total # of neighbors = 14397 241s Ave neighs/atom = 8.3509281 241s Neighbor list builds = 723 241s Dangerous builds = 0 241s Total wall time: 0:00:04 241s run: OK 242s autopkgtest [09:28:20]: test friction: -----------------------] 242s autopkgtest [09:28:20]: test friction: - - - - - - - - - - results - - - - - - - - - - 242s friction PASS 242s autopkgtest [09:28:20]: test hugo: preparing testbed 243s Reading package lists... 243s Building dependency tree... 243s Reading state information... 243s Starting pkgProblemResolver with broken count: 0 243s Starting 2 pkgProblemResolver with broken count: 0 243s Done 244s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 245s autopkgtest [09:28:23]: test hugo: [----------------------- 245s LAMMPS (7 Feb 2024 - Update 1) 245s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 245s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 245s using 1 OpenMP thread(s) per MPI task 245s Lattice spacing in x,y,z = 1.4142135 2 2 245s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 245s 1 by 1 by 2 MPI processor grid 245s Created 1000 atoms 245s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 245s create_atoms CPU = 0.001 seconds 245s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 245s Neighbor list info ... 245s update: every = 1 steps, delay = 0 steps, check = yes 245s max neighbors/atom: 2000, page size: 100000 245s master list distance cutoff = 1.8475372 245s ghost atom cutoff = 1.8475372 245s binsize = 0.92376862, bins = 8 11 11 245s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 245s (1) pair lj/cubic, perpetual 245s attributes: half, newton on 245s pair build: half/bin/atomonly/newton 245s stencil: half/bin/3d 245s bin: standard 245s Setting up cg style minimization ... 245s Unit style : lj 245s Current step : 0 245s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 245s (src/min.cpp:219) 245s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 245s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 245s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 245s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 245s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 245s Loop time of 0.0382465 on 2 procs for 134 steps with 1000 atoms 245s 245s 98.4% CPU use with 2 MPI tasks x 1 OpenMP threads 245s 245s Minimization stats: 245s Stopping criterion = force tolerance 245s Energy initial, next-to-last, final = 245s -6.29375358358574 -6.33442531515467 -6.33442531515467 245s Force two-norm initial, final = 3395.2895 5.526433e-10 245s Force max component initial, final = 1960.2713 3.2059964e-10 245s Final line search alpha, max atom move = 1 3.2059964e-10 245s Iterations, force evaluations = 134 137 245s 245s MPI task timing breakdown: 245s Section | min time | avg time | max time |%varavg| %total 245s --------------------------------------------------------------- 245s Pair | 0.025461 | 0.027812 | 0.030163 | 1.4 | 72.72 245s Neigh | 0.00044932 | 0.00047883 | 0.00050834 | 0.0 | 1.25 245s Comm | 0.0023543 | 0.0047091 | 0.007064 | 3.4 | 12.31 245s Output | 1.6845e-05 | 3.0657e-05 | 4.4469e-05 | 0.0 | 0.08 245s Modify | 0 | 0 | 0 | 0.0 | 0.00 245s Other | | 0.005216 | | | 13.64 245s 245s Nlocal: 500 ave 550 max 450 min 245s Histogram: 1 0 0 0 0 0 0 0 0 1 245s Nghost: 1214 ave 1264 max 1164 min 245s Histogram: 1 0 0 0 0 0 0 0 0 1 245s Neighs: 10500 ave 11550 max 9450 min 245s Histogram: 1 0 0 0 0 0 0 0 0 1 245s 245s Total # of neighbors = 21000 245s Ave neighs/atom = 21 245s Neighbor list builds = 1 245s Dangerous builds = 0 245s System init for write_restart ... 245s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 245s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 245s using 1 OpenMP thread(s) per MPI task 245s Reading restart file ... 245s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 245s restoring atom style atomic from restart 245s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 245s 1 by 1 by 2 MPI processor grid 245s restoring pair style lj/cubic from restart 245s 1000 atoms 245s read_restart CPU = 0.000 seconds 245s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 245s Neighbor list info ... 245s update: every = 1 steps, delay = 0 steps, check = yes 245s max neighbors/atom: 2000, page size: 100000 245s master list distance cutoff = 1.7475372 245s ghost atom cutoff = 1.7475372 245s binsize = 0.87376862, bins = 8 12 12 245s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 245s (1) pair lj/cubic, perpetual 245s attributes: half, newton on 245s pair build: half/bin/atomonly/newton 245s stencil: half/bin/3d 245s bin: standard 245s Setting up Verlet run ... 245s Unit style : lj 245s Current step : 0 245s Time step : 0.001 245s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 245s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 245s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 245s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 245s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 246s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 247s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 247s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 248s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 249s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 249s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 250s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 251s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 251s Loop time of 5.91599 on 2 procs for 10000 steps with 1000 atoms 251s 251s Performance: 146044.866 tau/day, 1690.334 timesteps/s, 1.690 Matom-step/s 251s 71.4% CPU use with 2 MPI tasks x 1 OpenMP threads 251s 251s MPI task timing breakdown: 251s Section | min time | avg time | max time |%varavg| %total 251s --------------------------------------------------------------- 251s Pair | 3.094 | 3.2358 | 3.3775 | 7.9 | 54.70 251s Neigh | 0.11848 | 0.12836 | 0.13824 | 2.8 | 2.17 251s Comm | 1.6377 | 1.7719 | 1.906 | 10.1 | 29.95 251s Output | 0.00059847 | 0.002165 | 0.0037315 | 3.4 | 0.04 251s Modify | 0.65362 | 0.65619 | 0.65876 | 0.3 | 11.09 251s Other | | 0.1216 | | | 2.06 251s 251s Nlocal: 500 ave 509 max 491 min 251s Histogram: 1 0 0 0 0 0 0 0 0 1 251s Nghost: 1346.5 ave 1369 max 1324 min 251s Histogram: 1 0 0 0 0 0 0 0 0 1 251s Neighs: 10311.5 ave 10391 max 10232 min 251s Histogram: 1 0 0 0 0 0 0 0 0 1 251s 251s Total # of neighbors = 20623 251s Ave neighs/atom = 20.623 251s Neighbor list builds = 205 251s Dangerous builds = 0 251s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 251s using 1 OpenMP thread(s) per MPI task 251s Reading restart file ... 251s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 251s restoring atom style atomic from restart 251s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 251s 1 by 1 by 2 MPI processor grid 251s restoring pair style lj/cubic from restart 251s 1000 atoms 251s read_restart CPU = 0.003 seconds 251s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 251s Neighbor list info ... 251s update: every = 1 steps, delay = 0 steps, check = yes 251s max neighbors/atom: 2000, page size: 100000 251s master list distance cutoff = 1.7475372 251s ghost atom cutoff = 1.7475372 251s binsize = 0.87376862, bins = 8 12 12 251s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 251s (1) pair lj/cubic, perpetual 251s attributes: half, newton on 251s pair build: half/bin/atomonly/newton 251s stencil: half/bin/3d 251s bin: standard 251s Setting up Verlet run ... 251s Unit style : lj 251s Current step : 0 251s Time step : 0.001 251s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 251s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 251s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 251s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 252s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 252s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 253s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 254s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 254s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 254s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 255s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 255s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 256s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 256s Loop time of 5.06779 on 2 procs for 10000 steps with 1000 atoms 256s 256s Performance: 170488.617 tau/day, 1973.248 timesteps/s, 1.973 Matom-step/s 256s 72.6% CPU use with 2 MPI tasks x 1 OpenMP threads 256s 256s MPI task timing breakdown: 256s Section | min time | avg time | max time |%varavg| %total 256s --------------------------------------------------------------- 256s Pair | 2.761 | 2.838 | 2.915 | 4.6 | 56.00 256s Neigh | 0.0044645 | 0.0060437 | 0.0076228 | 2.0 | 0.12 256s Comm | 1.4414 | 1.5133 | 1.5853 | 5.9 | 29.86 256s Output | 0.00095913 | 0.0031735 | 0.0053878 | 3.9 | 0.06 256s Modify | 0.5924 | 0.59523 | 0.59807 | 0.4 | 11.75 256s Other | | 0.112 | | | 2.21 256s 256s Nlocal: 500 ave 508 max 492 min 256s Histogram: 1 0 0 0 0 0 0 0 0 1 256s Nghost: 1214 ave 1222 max 1206 min 256s Histogram: 1 0 0 0 0 0 0 0 0 1 256s Neighs: 10500 ave 10668 max 10332 min 256s Histogram: 1 0 0 0 0 0 0 0 0 1 256s 256s Total # of neighbors = 21000 256s Ave neighs/atom = 21 256s Neighbor list builds = 10 256s Dangerous builds = 0 256s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 256s using 1 OpenMP thread(s) per MPI task 256s Reading restart file ... 256s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 256s restoring atom style atomic from restart 256s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 256s 1 by 1 by 2 MPI processor grid 256s restoring pair style lj/cubic from restart 256s 1000 atoms 256s read_restart CPU = 0.002 seconds 256s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 256s Neighbor list info ... 256s update: every = 1 steps, delay = 0 steps, check = yes 256s max neighbors/atom: 2000, page size: 100000 256s master list distance cutoff = 1.7475372 256s ghost atom cutoff = 1.7475372 256s binsize = 0.87376862, bins = 8 12 12 256s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 256s (1) pair lj/cubic, perpetual 256s attributes: half, newton on 256s pair build: half/bin/atomonly/newton 256s stencil: half/bin/3d 256s bin: standard 256s Setting up Verlet run ... 256s Unit style : lj 256s Current step : 0 256s Time step : 0.001 256s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 256s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 256s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 256s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 257s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 257s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 258s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 258s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 259s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 259s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 259s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 260s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 260s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 260s Loop time of 4.58447 on 2 procs for 10000 steps with 1000 atoms 260s 260s Performance: 188462.287 tau/day, 2181.276 timesteps/s, 2.181 Matom-step/s 260s 75.3% CPU use with 2 MPI tasks x 1 OpenMP threads 260s 260s MPI task timing breakdown: 260s Section | min time | avg time | max time |%varavg| %total 260s --------------------------------------------------------------- 260s Pair | 2.7188 | 2.7242 | 2.7296 | 0.3 | 59.42 260s Neigh | 0.057507 | 0.057546 | 0.057585 | 0.0 | 1.26 260s Comm | 1.1411 | 1.1444 | 1.1476 | 0.3 | 24.96 260s Output | 0.0010299 | 0.0066023 | 0.012175 | 6.9 | 0.14 260s Modify | 0.55455 | 0.55655 | 0.55856 | 0.3 | 12.14 260s Other | | 0.09521 | | | 2.08 260s 260s Nlocal: 500 ave 510 max 490 min 260s Histogram: 1 0 0 0 0 0 0 0 0 1 260s Nghost: 1216.5 ave 1227 max 1206 min 260s Histogram: 1 0 0 0 0 0 0 0 0 1 260s Neighs: 10311 ave 10520 max 10102 min 260s Histogram: 1 0 0 0 0 0 0 0 0 1 260s 260s Total # of neighbors = 20622 260s Ave neighs/atom = 20.622 260s Neighbor list builds = 95 260s Dangerous builds = 0 260s Total wall time: 0:00:15 261s LAMMPS (7 Feb 2024 - Update 1) 261s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 261s using 1 OpenMP thread(s) per MPI task 261s Lattice spacing in x,y,z = 1.4142135 2 2 261s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 261s 1 by 1 by 1 MPI processor grid 261s Created 1000 atoms 261s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 261s create_atoms CPU = 0.000 seconds 261s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 261s Neighbor list info ... 261s update: every = 1 steps, delay = 0 steps, check = yes 261s max neighbors/atom: 2000, page size: 100000 261s master list distance cutoff = 1.8475372 261s ghost atom cutoff = 1.8475372 261s binsize = 0.92376862, bins = 8 11 11 261s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 261s (1) pair lj/cubic, perpetual 261s attributes: half, newton on 261s pair build: half/bin/atomonly/newton 261s stencil: half/bin/3d 261s bin: standard 261s Setting up cg style minimization ... 261s Unit style : lj 261s Current step : 0 261s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 261s (src/min.cpp:219) 261s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 261s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 261s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 261s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 261s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 261s Loop time of 0.0645716 on 1 procs for 134 steps with 1000 atoms 261s 261s 96.9% CPU use with 1 MPI tasks x 1 OpenMP threads 261s 261s Minimization stats: 261s Stopping criterion = force tolerance 261s Energy initial, next-to-last, final = 261s -6.29375358358556 -6.33442531515503 -6.33442531515503 261s Force two-norm initial, final = 3395.2895 5.6047601e-10 261s Force max component initial, final = 1960.2713 3.2666928e-10 261s Final line search alpha, max atom move = 1 3.2666928e-10 261s Iterations, force evaluations = 134 137 261s 261s MPI task timing breakdown: 261s Section | min time | avg time | max time |%varavg| %total 261s --------------------------------------------------------------- 261s Pair | 0.055328 | 0.055328 | 0.055328 | 0.0 | 85.69 261s Neigh | 0.00095294 | 0.00095294 | 0.00095294 | 0.0 | 1.48 261s Comm | 0.00074666 | 0.00074666 | 0.00074666 | 0.0 | 1.16 261s Output | 2.1116e-05 | 2.1116e-05 | 2.1116e-05 | 0.0 | 0.03 261s Modify | 0 | 0 | 0 | 0.0 | 0.00 261s Other | | 0.007523 | | | 11.65 261s 261s Nlocal: 1000 ave 1000 max 1000 min 261s Histogram: 1 0 0 0 0 0 0 0 0 0 261s Nghost: 1724 ave 1724 max 1724 min 261s Histogram: 1 0 0 0 0 0 0 0 0 0 261s Neighs: 21000 ave 21000 max 21000 min 261s Histogram: 1 0 0 0 0 0 0 0 0 0 261s 261s Total # of neighbors = 21000 261s Ave neighs/atom = 21 261s Neighbor list builds = 1 261s Dangerous builds = 0 261s System init for write_restart ... 261s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 261s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 261s using 1 OpenMP thread(s) per MPI task 261s Reading restart file ... 261s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 261s restoring atom style atomic from restart 261s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 261s 1 by 1 by 1 MPI processor grid 261s restoring pair style lj/cubic from restart 261s 1000 atoms 261s read_restart CPU = 0.000 seconds 261s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 261s Neighbor list info ... 261s update: every = 1 steps, delay = 0 steps, check = yes 261s max neighbors/atom: 2000, page size: 100000 261s master list distance cutoff = 1.7475372 261s ghost atom cutoff = 1.7475372 261s binsize = 0.87376862, bins = 8 12 12 261s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 269s (1) pair lj/cubic, perpetual 269s attributes: half, newton on 269s pair build: half/bin/atomonly/newton 269s stencil: half/bin/3d 269s bin: standard 269s Setting up Verlet run ... 269s Unit style : lj 269s Current step : 0 269s Time step : 0.001 269s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 269s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 269s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 269s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 269s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 269s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 269s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 269s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 269s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 269s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 269s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 269s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 269s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 269s Loop time of 7.81034 on 1 procs for 10000 steps with 1000 atoms 269s 269s Performance: 110622.544 tau/day, 1280.354 timesteps/s, 1.280 Matom-step/s 269s 71.5% CPU use with 1 MPI tasks x 1 OpenMP threads 269s 269s MPI task timing breakdown: 269s Section | min time | avg time | max time |%varavg| %total 269s --------------------------------------------------------------- 269s Pair | 6.6922 | 6.6922 | 6.6922 | 0.0 | 85.68 269s Neigh | 0.24645 | 0.24645 | 0.24645 | 0.0 | 3.16 269s Comm | 0.11137 | 0.11137 | 0.11137 | 0.0 | 1.43 269s Output | 0.00071026 | 0.00071026 | 0.00071026 | 0.0 | 0.01 269s Modify | 0.69771 | 0.69771 | 0.69771 | 0.0 | 8.93 269s Other | | 0.06196 | | | 0.79 269s 269s Nlocal: 1000 ave 1000 max 1000 min 269s Histogram: 1 0 0 0 0 0 0 0 0 0 269s Nghost: 1886 ave 1886 max 1886 min 269s Histogram: 1 0 0 0 0 0 0 0 0 0 269s Neighs: 20874 ave 20874 max 20874 min 269s Histogram: 1 0 0 0 0 0 0 0 0 0 269s 269s Total # of neighbors = 20874 269s Ave neighs/atom = 20.874 269s Neighbor list builds = 188 269s Dangerous builds = 0 269s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 269s using 1 OpenMP thread(s) per MPI task 269s Reading restart file ... 269s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 269s restoring atom style atomic from restart 269s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 269s 1 by 1 by 1 MPI processor grid 269s restoring pair style lj/cubic from restart 269s 1000 atoms 269s read_restart CPU = 0.001 seconds 269s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 269s Neighbor list info ... 274s update: every = 1 steps, delay = 0 steps, check = yes 274s max neighbors/atom: 2000, page size: 100000 274s master list distance cutoff = 1.7475372 274s ghost atom cutoff = 1.7475372 274s binsize = 0.87376862, bins = 8 12 12 274s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 274s (1) pair lj/cubic, perpetual 274s attributes: half, newton on 274s pair build: half/bin/atomonly/newton 274s stencil: half/bin/3d 274s bin: standard 274s Setting up Verlet run ... 274s Unit style : lj 274s Current step : 0 274s Time step : 0.001 274s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 274s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 274s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 274s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 274s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 274s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 274s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 274s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 274s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 274s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 274s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 274s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 274s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 274s Loop time of 5.64061 on 1 procs for 10000 steps with 1000 atoms 274s 274s Performance: 153174.970 tau/day, 1772.858 timesteps/s, 1.773 Matom-step/s 274s 81.8% CPU use with 1 MPI tasks x 1 OpenMP threads 274s 274s MPI task timing breakdown: 274s Section | min time | avg time | max time |%varavg| %total 274s --------------------------------------------------------------- 274s Pair | 4.9723 | 4.9723 | 4.9723 | 0.0 | 88.15 274s Neigh | 0.022715 | 0.022715 | 0.022715 | 0.0 | 0.40 274s Comm | 0.06707 | 0.06707 | 0.06707 | 0.0 | 1.19 274s Output | 0.00057434 | 0.00057434 | 0.00057434 | 0.0 | 0.01 274s Modify | 0.53592 | 0.53592 | 0.53592 | 0.0 | 9.50 274s Other | | 0.04201 | | | 0.74 274s 274s Nlocal: 1000 ave 1000 max 1000 min 274s Histogram: 1 0 0 0 0 0 0 0 0 0 274s Nghost: 1724 ave 1724 max 1724 min 274s Histogram: 1 0 0 0 0 0 0 0 0 0 274s Neighs: 21000 ave 21000 max 21000 min 274s Histogram: 1 0 0 0 0 0 0 0 0 0 274s 274s Total # of neighbors = 21000 274s Ave neighs/atom = 21 274s Neighbor list builds = 11 274s Dangerous builds = 0 274s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 274s using 1 OpenMP thread(s) per MPI task 274s Reading restart file ... 274s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 274s restoring atom style atomic from restart 281s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 281s 1 by 1 by 1 MPI processor grid 281s restoring pair style lj/cubic from restart 281s 1000 atoms 281s read_restart CPU = 0.002 seconds 281s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 281s Neighbor list info ... 281s update: every = 1 steps, delay = 0 steps, check = yes 281s max neighbors/atom: 2000, page size: 100000 281s master list distance cutoff = 1.7475372 281s ghost atom cutoff = 1.7475372 281s binsize = 0.87376862, bins = 8 12 12 281s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 281s (1) pair lj/cubic, perpetual 281s attributes: half, newton on 281s pair build: half/bin/atomonly/newton 281s stencil: half/bin/3d 281s bin: standard 281s Setting up Verlet run ... 281s Unit style : lj 281s Current step : 0 281s Time step : 0.001 281s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 281s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 281s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 281s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 281s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 281s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 281s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 281s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 281s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 281s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 281s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 281s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 281s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 281s Loop time of 6.56388 on 1 procs for 10000 steps with 1000 atoms 281s 281s Performance: 131629.490 tau/day, 1523.489 timesteps/s, 1.523 Matom-step/s 281s 73.6% CPU use with 1 MPI tasks x 1 OpenMP threads 281s 281s MPI task timing breakdown: 281s Section | min time | avg time | max time |%varavg| %total 281s --------------------------------------------------------------- 281s Pair | 5.6637 | 5.6637 | 5.6637 | 0.0 | 86.29 281s Neigh | 0.10569 | 0.10569 | 0.10569 | 0.0 | 1.61 281s Comm | 0.094398 | 0.094398 | 0.094398 | 0.0 | 1.44 281s Output | 0.00061977 | 0.00061977 | 0.00061977 | 0.0 | 0.01 281s Modify | 0.63565 | 0.63565 | 0.63565 | 0.0 | 9.68 281s Other | | 0.06382 | | | 0.97 281s 281s Nlocal: 1000 ave 1000 max 1000 min 281s Histogram: 1 0 0 0 0 0 0 0 0 0 281s Nghost: 1724 ave 1724 max 1724 min 281s Histogram: 1 0 0 0 0 0 0 0 0 0 281s Neighs: 20654 ave 20654 max 20654 min 281s Histogram: 1 0 0 0 0 0 0 0 0 0 281s 281s Total # of neighbors = 20654 281s Ave neighs/atom = 20.654 281s Neighbor list builds = 94 281s Dangerous builds = 0 281s Total wall time: 0:00:20 281s run: OK 281s autopkgtest [09:28:59]: test hugo: -----------------------] 281s hugo PASS 281s autopkgtest [09:28:59]: test hugo: - - - - - - - - - - results - - - - - - - - - - 282s autopkgtest [09:29:00]: test command1: preparing testbed 413s autopkgtest [09:31:11]: testbed dpkg architecture: s390x 413s autopkgtest [09:31:11]: testbed apt version: 3.0.0 413s autopkgtest [09:31:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 413s autopkgtest [09:31:11]: testbed release detected to be: questing 414s autopkgtest [09:31:12]: updating testbed package index (apt update) 415s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 415s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 415s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 415s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 415s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB] 415s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 415s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB] 415s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [208 kB] 415s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1079 kB] 416s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [9148 B] 416s Fetched 3701 kB in 1s (2523 kB/s) 417s Reading package lists... 417s autopkgtest [09:31:15]: upgrading testbed (apt dist-upgrade and autopurge) 417s Reading package lists... 417s Building dependency tree... 417s Reading state information... 418s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 418s Starting 2 pkgProblemResolver with broken count: 0 418s Done 418s Entering ResolveByKeep 418s 418s Calculating upgrade... 418s The following packages will be upgraded: 418s htop libpython3.13 libpython3.13-minimal libpython3.13-stdlib nano 418s python3.13 python3.13-gdbm python3.13-minimal 418s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 418s Need to get 9090 kB of archives. 418s After this operation, 7168 B of additional disk space will be used. 418s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main s390x python3.13 s390x 3.13.3-2 [739 kB] 419s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libpython3.13 s390x 3.13.3-2 [2517 kB] 419s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libpython3.13-stdlib s390x 3.13.3-2 [2054 kB] 419s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main s390x python3.13-minimal s390x 3.13.3-2 [2377 kB] 419s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libpython3.13-minimal s390x 3.13.3-2 [883 kB] 419s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x nano s390x 8.4-1 [299 kB] 419s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x htop s390x 3.4.1-4 [189 kB] 419s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x python3.13-gdbm s390x 3.13.3-2 [31.8 kB] 419s Fetched 9090 kB in 1s (10.1 MB/s) 420s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 420s Preparing to unpack .../0-python3.13_3.13.3-2_s390x.deb ... 420s Unpacking python3.13 (3.13.3-2) over (3.13.3-1) ... 420s Preparing to unpack .../1-libpython3.13_3.13.3-2_s390x.deb ... 420s Unpacking libpython3.13:s390x (3.13.3-2) over (3.13.3-1) ... 420s Preparing to unpack .../2-libpython3.13-stdlib_3.13.3-2_s390x.deb ... 420s Unpacking libpython3.13-stdlib:s390x (3.13.3-2) over (3.13.3-1) ... 420s Preparing to unpack .../3-python3.13-minimal_3.13.3-2_s390x.deb ... 420s Unpacking python3.13-minimal (3.13.3-2) over (3.13.3-1) ... 420s Preparing to unpack .../4-libpython3.13-minimal_3.13.3-2_s390x.deb ... 420s Unpacking libpython3.13-minimal:s390x (3.13.3-2) over (3.13.3-1) ... 420s Preparing to unpack .../5-nano_8.4-1_s390x.deb ... 420s Unpacking nano (8.4-1) over (8.3-1) ... 420s Preparing to unpack .../6-htop_3.4.1-4_s390x.deb ... 420s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 420s Preparing to unpack .../7-python3.13-gdbm_3.13.3-2_s390x.deb ... 420s Unpacking python3.13-gdbm (3.13.3-2) over (3.13.3-1) ... 420s Setting up htop (3.4.1-4) ... 420s Setting up libpython3.13-minimal:s390x (3.13.3-2) ... 420s Setting up nano (8.4-1) ... 420s Installing new version of config file /etc/nanorc ... 420s Setting up python3.13-minimal (3.13.3-2) ... 421s Setting up libpython3.13-stdlib:s390x (3.13.3-2) ... 421s Setting up python3.13-gdbm (3.13.3-2) ... 421s Setting up libpython3.13:s390x (3.13.3-2) ... 421s Setting up python3.13 (3.13.3-2) ... 421s Processing triggers for systemd (257.4-1ubuntu3) ... 422s Processing triggers for man-db (2.13.0-1) ... 422s Processing triggers for install-info (7.1.1-1) ... 422s Processing triggers for libc-bin (2.41-6ubuntu1) ... 423s Reading package lists... 423s Building dependency tree... 423s Reading state information... 423s Starting pkgProblemResolver with broken count: 0 423s Starting 2 pkgProblemResolver with broken count: 0 423s Done 423s Solving dependencies... 423s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 429s Reading package lists... 429s Building dependency tree... 429s Reading state information... 429s Starting pkgProblemResolver with broken count: 0 429s Starting 2 pkgProblemResolver with broken count: 0 429s Done 429s The following NEW packages will be installed: 429s autoconf automake autotools-dev cpp-14 cpp-14-s390x-linux-gnu 429s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14 429s gcc-14-s390x-linux-gnu gfortran-14 gfortran-14-s390x-linux-gnu libaec0 429s libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 libdouble-conversion3 429s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 429s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 429s libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 libgcc-14-dev 429s libgfortran-14-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 429s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 429s libhdf5-hl-310 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev 429s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 429s libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev liblammps0t64 429s liblapack3 libltdl-dev libltdl7 libmpc3 libmunge2 libnetcdf22 libnl-3-dev 429s libnl-route-3-dev libnuma-dev libogg0 libopengl0 libopenmpi-dev libopenmpi40 429s libpciaccess0 libpixman-1-0 libpmix-dev libpmix2t64 libpnetcdf6 libproj25 429s librdmacm1t64 libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 429s libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libubsan1 libvoro++1 429s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 429s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 429s libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 429s libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin mpi-default-dev 429s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 429s x11-common zlib1g-dev 430s 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded. 430s Need to get 128 MB of archives. 430s After this operation, 480 MB of additional disk space will be used. 430s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x m4 s390x 1.4.19-7 [259 kB] 430s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x autoconf all 2.72-3ubuntu1 [383 kB] 430s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x autotools-dev all 20220109.1 [44.9 kB] 430s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x automake all 1:1.17-3ubuntu1 [572 kB] 430s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x libisl23 s390x 0.27-1 [704 kB] 430s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 430s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [9572 kB] 430s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x cpp-14 s390x 14.2.0-19ubuntu2 [1024 B] 430s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 430s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 430s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 430s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x libcc1-0 s390x 15-20250404-0ubuntu1 [49.6 kB] 430s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB] 430s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x libitm1 s390x 15-20250404-0ubuntu1 [31.2 kB] 431s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x libasan8 s390x 15-20250404-0ubuntu1 [2966 kB] 431s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libubsan1 s390x 15-20250404-0ubuntu1 [1210 kB] 431s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x libgcc-14-dev s390x 14.2.0-19ubuntu2 [1037 kB] 431s Get:18 http://ftpmaster.internal/ubuntu questing/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [18.7 MB] 431s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x gcc-14 s390x 14.2.0-19ubuntu2 [529 kB] 431s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB] 431s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran-14-dev s390x 14.2.0-19ubuntu2 [653 kB] 431s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [10.3 MB] 431s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-14 s390x 14.2.0-19ubuntu2 [14.2 kB] 431s Get:24 http://ftpmaster.internal/ubuntu questing/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 431s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 431s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 431s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 431s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 432s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 432s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 432s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 432s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB] 432s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 432s Get:34 http://ftpmaster.internal/ubuntu questing/universe s390x libdouble-conversion3 s390x 3.3.1-1 [43.3 kB] 432s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-10 [145 kB] 432s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libevent-extra-2.1-7t64 s390x 2.1.12-stable-10 [64.1 kB] 432s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10 [7870 B] 432s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libevent-openssl-2.1-7t64 s390x 2.1.12-stable-10 [14.9 kB] 432s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x libevent-dev s390x 2.1.12-stable-10 [276 kB] 432s Get:40 http://ftpmaster.internal/ubuntu questing/main s390x librdmacm1t64 s390x 56.0-4ubuntu1 [74.0 kB] 432s Get:41 http://ftpmaster.internal/ubuntu questing/universe s390x libfabric1 s390x 1.17.0-3.1 [558 kB] 432s Get:42 http://ftpmaster.internal/ubuntu questing/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build1 [511 kB] 432s Get:43 http://ftpmaster.internal/ubuntu questing/main s390x libwayland-server0 s390x 1.23.1-3 [37.3 kB] 432s Get:44 http://ftpmaster.internal/ubuntu questing/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 432s Get:45 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 432s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 432s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 432s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 432s Get:49 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 432s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 432s Get:51 http://ftpmaster.internal/ubuntu questing/main s390x mesa-libgallium s390x 25.0.3-1ubuntu2 [8057 kB] 432s Get:52 http://ftpmaster.internal/ubuntu questing/main s390x libgbm1 s390x 25.0.3-1ubuntu2 [34.5 kB] 432s Get:53 http://ftpmaster.internal/ubuntu questing/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 432s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libgl1-mesa-dri s390x 25.0.3-1ubuntu2 [35.5 kB] 432s Get:55 http://ftpmaster.internal/ubuntu questing/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 432s Get:56 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 432s Get:57 http://ftpmaster.internal/ubuntu questing/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 432s Get:58 http://ftpmaster.internal/ubuntu questing/main s390x libglx-mesa0 s390x 25.0.3-1ubuntu2 [161 kB] 432s Get:59 http://ftpmaster.internal/ubuntu questing/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 432s Get:60 http://ftpmaster.internal/ubuntu questing/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 432s Get:61 http://ftpmaster.internal/ubuntu questing/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 432s Get:62 http://ftpmaster.internal/ubuntu questing/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 432s Get:63 http://ftpmaster.internal/ubuntu questing/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 432s Get:64 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 432s Get:65 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 432s Get:66 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc15 s390x 2.12.0-1 [176 kB] 432s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 432s Get:68 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 432s Get:69 http://ftpmaster.internal/ubuntu questing/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 432s Get:70 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 432s Get:71 http://ftpmaster.internal/ubuntu questing/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 432s Get:72 http://ftpmaster.internal/ubuntu questing/universe s390x libkim-api2 s390x 2.3.0-1ubuntu1 [602 kB] 432s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 432s Get:74 http://ftpmaster.internal/ubuntu questing/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 432s Get:75 http://ftpmaster.internal/ubuntu questing/universe s390x libmunge2 s390x 0.5.16-1 [15.2 kB] 432s Get:76 http://ftpmaster.internal/ubuntu questing/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB] 432s Get:77 http://ftpmaster.internal/ubuntu questing/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 432s Get:78 http://ftpmaster.internal/ubuntu questing/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1build1 [41.1 kB] 432s Get:79 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc-plugins s390x 2.12.0-1 [16.1 kB] 432s Get:80 http://ftpmaster.internal/ubuntu questing/universe s390x libpmix2t64 s390x 5.0.6-5 [715 kB] 432s Get:81 http://ftpmaster.internal/ubuntu questing/universe s390x libopenmpi40 s390x 5.0.7-1 [2196 kB] 432s Get:82 http://ftpmaster.internal/ubuntu questing/universe s390x libpnetcdf6 s390x 1.14.0-2 [1172 kB] 432s Get:83 http://ftpmaster.internal/ubuntu questing/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 432s Get:84 http://ftpmaster.internal/ubuntu questing/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 432s Get:85 http://ftpmaster.internal/ubuntu questing/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 432s Get:86 http://ftpmaster.internal/ubuntu questing/universe s390x proj-data all 9.5.1-1 [7924 kB] 433s Get:87 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 433s Get:88 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 433s Get:89 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 433s Get:90 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 433s Get:91 http://ftpmaster.internal/ubuntu questing/universe s390x libproj25 s390x 9.5.1-1 [1452 kB] 433s Get:92 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbbind-2-5 s390x 2022.0.0-2 [15.3 kB] 433s Get:93 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbmalloc2 s390x 2022.0.0-2 [57.7 kB] 433s Get:94 http://ftpmaster.internal/ubuntu questing/universe s390x libtbb12 s390x 2022.0.0-2 [99.9 kB] 433s Get:95 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 433s Get:96 http://ftpmaster.internal/ubuntu questing/main s390x libtheoradec1 s390x 1.2.0~alpha1+dfsg-6 [68.6 kB] 433s Get:97 http://ftpmaster.internal/ubuntu questing/main s390x libtheoraenc1 s390x 1.2.0~alpha1+dfsg-6 [142 kB] 433s Get:98 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 433s Get:99 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 433s Get:100 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 433s Get:101 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 433s Get:102 http://ftpmaster.internal/ubuntu questing/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-4ubuntu1 [27.1 MB] 434s Get:103 http://ftpmaster.internal/ubuntu questing/universe s390x liblammps0t64 s390x 20240207+dfsg-3build3 [7859 kB] 435s Get:104 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-common all 5.0.7-1 [97.9 kB] 435s Get:105 http://ftpmaster.internal/ubuntu questing/main s390x libnl-3-dev s390x 3.7.0-2 [103 kB] 435s Get:106 http://ftpmaster.internal/ubuntu questing/main s390x libnl-route-3-dev s390x 3.7.0-2 [214 kB] 435s Get:107 http://ftpmaster.internal/ubuntu questing/main s390x libibverbs-dev s390x 56.0-4ubuntu1 [717 kB] 435s Get:108 http://ftpmaster.internal/ubuntu questing/main s390x libnuma-dev s390x 2.0.18-1build1 [38.9 kB] 435s Get:109 http://ftpmaster.internal/ubuntu questing/main s390x libltdl7 s390x 2.5.4-4 [43.8 kB] 435s Get:110 http://ftpmaster.internal/ubuntu questing/main s390x libltdl-dev s390x 2.5.4-4 [173 kB] 435s Get:111 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc-dev s390x 2.12.0-1 [275 kB] 435s Get:112 http://ftpmaster.internal/ubuntu questing/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 435s Get:113 http://ftpmaster.internal/ubuntu questing/universe s390x libpmix-dev s390x 5.0.6-5 [4058 kB] 435s Get:114 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-bin s390x 5.0.7-1 [200 kB] 435s Get:115 http://ftpmaster.internal/ubuntu questing/universe s390x libopenmpi-dev s390x 5.0.7-1 [1023 kB] 435s Get:116 http://ftpmaster.internal/ubuntu questing/universe s390x mpi-default-dev s390x 1.18 [3324 B] 435s Get:117 http://ftpmaster.internal/ubuntu questing/universe s390x liblammps-dev s390x 20240207+dfsg-3build3 [112 kB] 435s Get:118 http://ftpmaster.internal/ubuntu questing/universe s390x mpi-default-bin s390x 1.18 [2510 B] 435s Get:119 http://ftpmaster.internal/ubuntu questing/universe s390x python3-lammps s390x 20240207+dfsg-3build3 [70.5 kB] 436s Fetched 128 MB in 6s (22.9 MB/s) 436s Selecting previously unselected package m4. 436s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 436s Preparing to unpack .../000-m4_1.4.19-7_s390x.deb ... 436s Unpacking m4 (1.4.19-7) ... 436s Selecting previously unselected package autoconf. 436s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 436s Unpacking autoconf (2.72-3ubuntu1) ... 436s Selecting previously unselected package autotools-dev. 436s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 436s Unpacking autotools-dev (20220109.1) ... 436s Selecting previously unselected package automake. 436s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 436s Unpacking automake (1:1.17-3ubuntu1) ... 436s Selecting previously unselected package libisl23:s390x. 436s Preparing to unpack .../004-libisl23_0.27-1_s390x.deb ... 436s Unpacking libisl23:s390x (0.27-1) ... 436s Selecting previously unselected package libmpc3:s390x. 436s Preparing to unpack .../005-libmpc3_1.3.1-1build2_s390x.deb ... 436s Unpacking libmpc3:s390x (1.3.1-1build2) ... 436s Selecting previously unselected package cpp-14-s390x-linux-gnu. 436s Preparing to unpack .../006-cpp-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 436s Unpacking cpp-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 436s Selecting previously unselected package cpp-14. 436s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_s390x.deb ... 436s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 436s Selecting previously unselected package fonts-dejavu-mono. 436s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 436s Unpacking fonts-dejavu-mono (2.37-8) ... 436s Selecting previously unselected package fonts-dejavu-core. 436s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 436s Unpacking fonts-dejavu-core (2.37-8) ... 436s Selecting previously unselected package fontconfig-config. 436s Preparing to unpack .../010-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 436s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 436s Selecting previously unselected package libcc1-0:s390x. 436s Preparing to unpack .../011-libcc1-0_15-20250404-0ubuntu1_s390x.deb ... 436s Unpacking libcc1-0:s390x (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package libgomp1:s390x. 436s Preparing to unpack .../012-libgomp1_15-20250404-0ubuntu1_s390x.deb ... 436s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package libitm1:s390x. 436s Preparing to unpack .../013-libitm1_15-20250404-0ubuntu1_s390x.deb ... 436s Unpacking libitm1:s390x (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package libasan8:s390x. 436s Preparing to unpack .../014-libasan8_15-20250404-0ubuntu1_s390x.deb ... 436s Unpacking libasan8:s390x (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package libubsan1:s390x. 436s Preparing to unpack .../015-libubsan1_15-20250404-0ubuntu1_s390x.deb ... 436s Unpacking libubsan1:s390x (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package libgcc-14-dev:s390x. 436s Preparing to unpack .../016-libgcc-14-dev_14.2.0-19ubuntu2_s390x.deb ... 436s Unpacking libgcc-14-dev:s390x (14.2.0-19ubuntu2) ... 436s Selecting previously unselected package gcc-14-s390x-linux-gnu. 436s Preparing to unpack .../017-gcc-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 436s Unpacking gcc-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 437s Selecting previously unselected package gcc-14. 437s Preparing to unpack .../018-gcc-14_14.2.0-19ubuntu2_s390x.deb ... 437s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 437s Selecting previously unselected package libgfortran5:s390x. 437s Preparing to unpack .../019-libgfortran5_15-20250404-0ubuntu1_s390x.deb ... 437s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ... 437s Selecting previously unselected package libgfortran-14-dev:s390x. 437s Preparing to unpack .../020-libgfortran-14-dev_14.2.0-19ubuntu2_s390x.deb ... 437s Unpacking libgfortran-14-dev:s390x (14.2.0-19ubuntu2) ... 437s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 437s Preparing to unpack .../021-gfortran-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 437s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 437s Selecting previously unselected package gfortran-14. 437s Preparing to unpack .../022-gfortran-14_14.2.0-19ubuntu2_s390x.deb ... 437s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 437s Selecting previously unselected package libaec0:s390x. 437s Preparing to unpack .../023-libaec0_1.1.3-1_s390x.deb ... 437s Unpacking libaec0:s390x (1.1.3-1) ... 437s Selecting previously unselected package libblas3:s390x. 437s Preparing to unpack .../024-libblas3_3.12.1-2_s390x.deb ... 437s Unpacking libblas3:s390x (3.12.1-2) ... 437s Selecting previously unselected package libfreetype6:s390x. 437s Preparing to unpack .../025-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 437s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 437s Selecting previously unselected package libfontconfig1:s390x. 437s Preparing to unpack .../026-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 437s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 437s Selecting previously unselected package libpixman-1-0:s390x. 437s Preparing to unpack .../027-libpixman-1-0_0.44.0-3_s390x.deb ... 437s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 437s Selecting previously unselected package libxcb-render0:s390x. 437s Preparing to unpack .../028-libxcb-render0_1.17.0-2_s390x.deb ... 437s Unpacking libxcb-render0:s390x (1.17.0-2) ... 437s Selecting previously unselected package libxcb-shm0:s390x. 437s Preparing to unpack .../029-libxcb-shm0_1.17.0-2_s390x.deb ... 437s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 437s Selecting previously unselected package libxrender1:s390x. 437s Preparing to unpack .../030-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 437s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 437s Selecting previously unselected package libcairo2:s390x. 437s Preparing to unpack .../031-libcairo2_1.18.4-1_s390x.deb ... 437s Unpacking libcairo2:s390x (1.18.4-1) ... 437s Selecting previously unselected package libdeflate0:s390x. 437s Preparing to unpack .../032-libdeflate0_1.23-1_s390x.deb ... 437s Unpacking libdeflate0:s390x (1.23-1) ... 437s Selecting previously unselected package libdouble-conversion3:s390x. 437s Preparing to unpack .../033-libdouble-conversion3_3.3.1-1_s390x.deb ... 437s Unpacking libdouble-conversion3:s390x (3.3.1-1) ... 437s Selecting previously unselected package libevent-2.1-7t64:s390x. 437s Preparing to unpack .../034-libevent-2.1-7t64_2.1.12-stable-10_s390x.deb ... 437s Unpacking libevent-2.1-7t64:s390x (2.1.12-stable-10) ... 437s Selecting previously unselected package libevent-extra-2.1-7t64:s390x. 437s Preparing to unpack .../035-libevent-extra-2.1-7t64_2.1.12-stable-10_s390x.deb ... 437s Unpacking libevent-extra-2.1-7t64:s390x (2.1.12-stable-10) ... 437s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 437s Preparing to unpack .../036-libevent-pthreads-2.1-7t64_2.1.12-stable-10_s390x.deb ... 437s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 437s Selecting previously unselected package libevent-openssl-2.1-7t64:s390x. 437s Preparing to unpack .../037-libevent-openssl-2.1-7t64_2.1.12-stable-10_s390x.deb ... 437s Unpacking libevent-openssl-2.1-7t64:s390x (2.1.12-stable-10) ... 437s Selecting previously unselected package libevent-dev. 437s Preparing to unpack .../038-libevent-dev_2.1.12-stable-10_s390x.deb ... 437s Unpacking libevent-dev (2.1.12-stable-10) ... 437s Selecting previously unselected package librdmacm1t64:s390x. 437s Preparing to unpack .../039-librdmacm1t64_56.0-4ubuntu1_s390x.deb ... 437s Unpacking librdmacm1t64:s390x (56.0-4ubuntu1) ... 437s Selecting previously unselected package libfabric1:s390x. 437s Preparing to unpack .../040-libfabric1_1.17.0-3.1_s390x.deb ... 437s Unpacking libfabric1:s390x (1.17.0-3.1) ... 437s Selecting previously unselected package libfftw3-double3:s390x. 437s Preparing to unpack .../041-libfftw3-double3_3.3.10-2fakesync1build1_s390x.deb ... 437s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 437s Selecting previously unselected package libwayland-server0:s390x. 437s Preparing to unpack .../042-libwayland-server0_1.23.1-3_s390x.deb ... 437s Unpacking libwayland-server0:s390x (1.23.1-3) ... 437s Selecting previously unselected package libx11-xcb1:s390x. 437s Preparing to unpack .../043-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 437s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 437s Selecting previously unselected package libxcb-dri3-0:s390x. 437s Preparing to unpack .../044-libxcb-dri3-0_1.17.0-2_s390x.deb ... 437s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 437s Selecting previously unselected package libxcb-present0:s390x. 437s Preparing to unpack .../045-libxcb-present0_1.17.0-2_s390x.deb ... 437s Unpacking libxcb-present0:s390x (1.17.0-2) ... 437s Selecting previously unselected package libxcb-randr0:s390x. 437s Preparing to unpack .../046-libxcb-randr0_1.17.0-2_s390x.deb ... 437s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 437s Selecting previously unselected package libxcb-sync1:s390x. 437s Preparing to unpack .../047-libxcb-sync1_1.17.0-2_s390x.deb ... 437s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 437s Selecting previously unselected package libxcb-xfixes0:s390x. 437s Preparing to unpack .../048-libxcb-xfixes0_1.17.0-2_s390x.deb ... 437s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 437s Selecting previously unselected package libxshmfence1:s390x. 437s Preparing to unpack .../049-libxshmfence1_1.3-1build5_s390x.deb ... 437s Unpacking libxshmfence1:s390x (1.3-1build5) ... 437s Selecting previously unselected package mesa-libgallium:s390x. 437s Preparing to unpack .../050-mesa-libgallium_25.0.3-1ubuntu2_s390x.deb ... 437s Unpacking mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 437s Selecting previously unselected package libgbm1:s390x. 437s Preparing to unpack .../051-libgbm1_25.0.3-1ubuntu2_s390x.deb ... 437s Unpacking libgbm1:s390x (25.0.3-1ubuntu2) ... 437s Selecting previously unselected package libvulkan1:s390x. 437s Preparing to unpack .../052-libvulkan1_1.4.304.0-1_s390x.deb ... 437s Unpacking libvulkan1:s390x (1.4.304.0-1) ... 437s Selecting previously unselected package libgl1-mesa-dri:s390x. 437s Preparing to unpack .../053-libgl1-mesa-dri_25.0.3-1ubuntu2_s390x.deb ... 437s Unpacking libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 437s Selecting previously unselected package libglvnd0:s390x. 437s Preparing to unpack .../054-libglvnd0_1.7.0-1build1_s390x.deb ... 437s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 437s Selecting previously unselected package libxcb-glx0:s390x. 437s Preparing to unpack .../055-libxcb-glx0_1.17.0-2_s390x.deb ... 437s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 437s Selecting previously unselected package libxxf86vm1:s390x. 437s Preparing to unpack .../056-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 437s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 437s Selecting previously unselected package libglx-mesa0:s390x. 437s Preparing to unpack .../057-libglx-mesa0_25.0.3-1ubuntu2_s390x.deb ... 437s Unpacking libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 437s Selecting previously unselected package libglx0:s390x. 437s Preparing to unpack .../058-libglx0_1.7.0-1build1_s390x.deb ... 437s Unpacking libglx0:s390x (1.7.0-1build1) ... 437s Selecting previously unselected package libgl1:s390x. 438s Preparing to unpack .../059-libgl1_1.7.0-1build1_s390x.deb ... 438s Unpacking libgl1:s390x (1.7.0-1build1) ... 438s Selecting previously unselected package libgl2ps1.4. 438s Preparing to unpack .../060-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 438s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 438s Selecting previously unselected package libglew2.2:s390x. 438s Preparing to unpack .../061-libglew2.2_2.2.0-4build1_s390x.deb ... 438s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 438s Selecting previously unselected package libsz2:s390x. 438s Preparing to unpack .../062-libsz2_1.1.3-1_s390x.deb ... 438s Unpacking libsz2:s390x (1.1.3-1) ... 438s Selecting previously unselected package libhdf5-310:s390x. 438s Preparing to unpack .../063-libhdf5-310_1.14.5+repack-3_s390x.deb ... 438s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 438s Selecting previously unselected package libhdf5-hl-310:s390x. 438s Preparing to unpack .../064-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 438s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 438s Selecting previously unselected package libhwloc15:s390x. 438s Preparing to unpack .../065-libhwloc15_2.12.0-1_s390x.deb ... 438s Unpacking libhwloc15:s390x (2.12.0-1) ... 438s Selecting previously unselected package libjpeg-turbo8:s390x. 438s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 438s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 438s Selecting previously unselected package libjpeg8:s390x. 438s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_s390x.deb ... 438s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 438s Selecting previously unselected package libjs-jquery. 438s Preparing to unpack .../068-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 438s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 438s Selecting previously unselected package libjs-jquery-ui. 438s Preparing to unpack .../069-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 438s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 438s Selecting previously unselected package libjsoncpp26:s390x. 438s Preparing to unpack .../070-libjsoncpp26_1.9.6-3_s390x.deb ... 438s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 438s Selecting previously unselected package libkim-api2:s390x. 438s Preparing to unpack .../071-libkim-api2_2.3.0-1ubuntu1_s390x.deb ... 438s Unpacking libkim-api2:s390x (2.3.0-1ubuntu1) ... 438s Selecting previously unselected package liblapack3:s390x. 438s Preparing to unpack .../072-liblapack3_3.12.1-2_s390x.deb ... 438s Unpacking liblapack3:s390x (3.12.1-2) ... 438s Selecting previously unselected package libnetcdf22:s390x. 438s Preparing to unpack .../073-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 438s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 438s Selecting previously unselected package libmunge2:s390x. 438s Preparing to unpack .../074-libmunge2_0.5.16-1_s390x.deb ... 438s Unpacking libmunge2:s390x (0.5.16-1) ... 438s Selecting previously unselected package libpciaccess0:s390x. 438s Preparing to unpack .../075-libpciaccess0_0.17-3build1_s390x.deb ... 438s Unpacking libpciaccess0:s390x (0.17-3build1) ... 438s Selecting previously unselected package libxnvctrl0:s390x. 438s Preparing to unpack .../076-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 438s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 438s Selecting previously unselected package ocl-icd-libopencl1:s390x. 438s Preparing to unpack .../077-ocl-icd-libopencl1_2.3.2-1build1_s390x.deb ... 438s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 438s Selecting previously unselected package libhwloc-plugins:s390x. 438s Preparing to unpack .../078-libhwloc-plugins_2.12.0-1_s390x.deb ... 438s Unpacking libhwloc-plugins:s390x (2.12.0-1) ... 438s Selecting previously unselected package libpmix2t64:s390x. 438s Preparing to unpack .../079-libpmix2t64_5.0.6-5_s390x.deb ... 438s Unpacking libpmix2t64:s390x (5.0.6-5) ... 438s Selecting previously unselected package libopenmpi40:s390x. 438s Preparing to unpack .../080-libopenmpi40_5.0.7-1_s390x.deb ... 438s Unpacking libopenmpi40:s390x (5.0.7-1) ... 438s Selecting previously unselected package libpnetcdf6:s390x. 438s Preparing to unpack .../081-libpnetcdf6_1.14.0-2_s390x.deb ... 438s Unpacking libpnetcdf6:s390x (1.14.0-2) ... 438s Selecting previously unselected package libvoro++1. 438s Preparing to unpack .../082-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 438s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 438s Selecting previously unselected package libogg0:s390x. 438s Preparing to unpack .../083-libogg0_1.3.5-3build1_s390x.deb ... 438s Unpacking libogg0:s390x (1.3.5-3build1) ... 438s Selecting previously unselected package libopengl0:s390x. 438s Preparing to unpack .../084-libopengl0_1.7.0-1build1_s390x.deb ... 438s Unpacking libopengl0:s390x (1.7.0-1build1) ... 438s Selecting previously unselected package proj-data. 438s Preparing to unpack .../085-proj-data_9.5.1-1_all.deb ... 438s Unpacking proj-data (9.5.1-1) ... 438s Selecting previously unselected package libjbig0:s390x. 438s Preparing to unpack .../086-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 438s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 438s Selecting previously unselected package libsharpyuv0:s390x. 438s Preparing to unpack .../087-libsharpyuv0_1.5.0-0.1_s390x.deb ... 438s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 438s Selecting previously unselected package libwebp7:s390x. 438s Preparing to unpack .../088-libwebp7_1.5.0-0.1_s390x.deb ... 438s Unpacking libwebp7:s390x (1.5.0-0.1) ... 438s Selecting previously unselected package libtiff6:s390x. 438s Preparing to unpack .../089-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 438s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 438s Selecting previously unselected package libproj25:s390x. 438s Preparing to unpack .../090-libproj25_9.5.1-1_s390x.deb ... 438s Unpacking libproj25:s390x (9.5.1-1) ... 438s Selecting previously unselected package libtbbbind-2-5:s390x. 438s Preparing to unpack .../091-libtbbbind-2-5_2022.0.0-2_s390x.deb ... 438s Unpacking libtbbbind-2-5:s390x (2022.0.0-2) ... 438s Selecting previously unselected package libtbbmalloc2:s390x. 438s Preparing to unpack .../092-libtbbmalloc2_2022.0.0-2_s390x.deb ... 438s Unpacking libtbbmalloc2:s390x (2022.0.0-2) ... 438s Selecting previously unselected package libtbb12:s390x. 438s Preparing to unpack .../093-libtbb12_2022.0.0-2_s390x.deb ... 438s Unpacking libtbb12:s390x (2022.0.0-2) ... 438s Selecting previously unselected package libtcl8.6:s390x. 438s Preparing to unpack .../094-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 438s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 438s Selecting previously unselected package libtheoradec1:s390x. 438s Preparing to unpack .../095-libtheoradec1_1.2.0~alpha1+dfsg-6_s390x.deb ... 438s Unpacking libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 438s Selecting previously unselected package libtheoraenc1:s390x. 438s Preparing to unpack .../096-libtheoraenc1_1.2.0~alpha1+dfsg-6_s390x.deb ... 438s Unpacking libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 438s Selecting previously unselected package libxft2:s390x. 438s Preparing to unpack .../097-libxft2_2.3.6-1build1_s390x.deb ... 438s Unpacking libxft2:s390x (2.3.6-1build1) ... 438s Selecting previously unselected package x11-common. 438s Preparing to unpack .../098-x11-common_1%3a7.7+23ubuntu4_all.deb ... 438s Unpacking x11-common (1:7.7+23ubuntu4) ... 438s Selecting previously unselected package libxss1:s390x. 438s Preparing to unpack .../099-libxss1_1%3a1.2.3-1build3_s390x.deb ... 438s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 438s Selecting previously unselected package libtk8.6:s390x. 438s Preparing to unpack .../100-libtk8.6_8.6.16-1_s390x.deb ... 438s Unpacking libtk8.6:s390x (8.6.16-1) ... 438s Selecting previously unselected package libvtk9.3:s390x. 438s Preparing to unpack .../101-libvtk9.3_9.3.0+dfsg1-4ubuntu1_s390x.deb ... 438s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 439s Selecting previously unselected package liblammps0t64:s390x. 439s Preparing to unpack .../102-liblammps0t64_20240207+dfsg-3build3_s390x.deb ... 439s Unpacking liblammps0t64:s390x (20240207+dfsg-3build3) ... 439s Selecting previously unselected package openmpi-common. 439s Preparing to unpack .../103-openmpi-common_5.0.7-1_all.deb ... 439s Unpacking openmpi-common (5.0.7-1) ... 439s Selecting previously unselected package libnl-3-dev:s390x. 439s Preparing to unpack .../104-libnl-3-dev_3.7.0-2_s390x.deb ... 439s Unpacking libnl-3-dev:s390x (3.7.0-2) ... 439s Selecting previously unselected package libnl-route-3-dev:s390x. 439s Preparing to unpack .../105-libnl-route-3-dev_3.7.0-2_s390x.deb ... 439s Unpacking libnl-route-3-dev:s390x (3.7.0-2) ... 439s Selecting previously unselected package libibverbs-dev:s390x. 439s Preparing to unpack .../106-libibverbs-dev_56.0-4ubuntu1_s390x.deb ... 439s Unpacking libibverbs-dev:s390x (56.0-4ubuntu1) ... 439s Selecting previously unselected package libnuma-dev:s390x. 439s Preparing to unpack .../107-libnuma-dev_2.0.18-1build1_s390x.deb ... 439s Unpacking libnuma-dev:s390x (2.0.18-1build1) ... 439s Selecting previously unselected package libltdl7:s390x. 439s Preparing to unpack .../108-libltdl7_2.5.4-4_s390x.deb ... 439s Unpacking libltdl7:s390x (2.5.4-4) ... 439s Selecting previously unselected package libltdl-dev:s390x. 439s Preparing to unpack .../109-libltdl-dev_2.5.4-4_s390x.deb ... 439s Unpacking libltdl-dev:s390x (2.5.4-4) ... 439s Selecting previously unselected package libhwloc-dev:s390x. 439s Preparing to unpack .../110-libhwloc-dev_2.12.0-1_s390x.deb ... 439s Unpacking libhwloc-dev:s390x (2.12.0-1) ... 439s Selecting previously unselected package zlib1g-dev:s390x. 439s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 439s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 439s Selecting previously unselected package libpmix-dev:s390x. 439s Preparing to unpack .../112-libpmix-dev_5.0.6-5_s390x.deb ... 439s Unpacking libpmix-dev:s390x (5.0.6-5) ... 439s Selecting previously unselected package openmpi-bin. 439s Preparing to unpack .../113-openmpi-bin_5.0.7-1_s390x.deb ... 439s Unpacking openmpi-bin (5.0.7-1) ... 439s Selecting previously unselected package libopenmpi-dev:s390x. 439s Preparing to unpack .../114-libopenmpi-dev_5.0.7-1_s390x.deb ... 439s Unpacking libopenmpi-dev:s390x (5.0.7-1) ... 440s Selecting previously unselected package mpi-default-dev. 440s Preparing to unpack .../115-mpi-default-dev_1.18_s390x.deb ... 440s Unpacking mpi-default-dev (1.18) ... 440s Selecting previously unselected package liblammps-dev. 440s Preparing to unpack .../116-liblammps-dev_20240207+dfsg-3build3_s390x.deb ... 440s Unpacking liblammps-dev (20240207+dfsg-3build3) ... 440s Selecting previously unselected package mpi-default-bin. 440s Preparing to unpack .../117-mpi-default-bin_1.18_s390x.deb ... 440s Unpacking mpi-default-bin (1.18) ... 440s Selecting previously unselected package python3-lammps. 440s Preparing to unpack .../118-python3-lammps_20240207+dfsg-3build3_s390x.deb ... 440s Unpacking python3-lammps (20240207+dfsg-3build3) ... 440s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 440s Setting up libtbbmalloc2:s390x (2022.0.0-2) ... 440s Setting up libpixman-1-0:s390x (0.44.0-3) ... 440s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 440s Setting up libwayland-server0:s390x (1.23.1-3) ... 440s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 440s Setting up libpciaccess0:s390x (0.17-3build1) ... 440s Setting up libdouble-conversion3:s390x (3.3.1-1) ... 440s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 440s Setting up libogg0:s390x (1.3.5-3build1) ... 440s Setting up proj-data (9.5.1-1) ... 440s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 440s Setting up libxcb-render0:s390x (1.17.0-2) ... 440s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 440s Setting up libglvnd0:s390x (1.7.0-1build1) ... 440s Setting up libxcb-glx0:s390x (1.17.0-2) ... 440s Setting up libevent-openssl-2.1-7t64:s390x (2.1.12-stable-10) ... 440s Setting up x11-common (1:7.7+23ubuntu4) ... 440s Setting up libdeflate0:s390x (1.23-1) ... 440s Setting up m4 (1.4.19-7) ... 440s Setting up libevent-2.1-7t64:s390x (2.1.12-stable-10) ... 440s Setting up libxcb-shm0:s390x (1.17.0-2) ... 440s Setting up libgomp1:s390x (15-20250404-0ubuntu1) ... 440s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 440s Setting up libaec0:s390x (1.1.3-1) ... 440s Setting up libopengl0:s390x (1.7.0-1build1) ... 440s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 440s Setting up libnuma-dev:s390x (2.0.18-1build1) ... 440s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 440s Setting up libxcb-present0:s390x (1.17.0-2) ... 440s Setting up libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 440s Setting up autotools-dev (20220109.1) ... 440s Setting up libblas3:s390x (3.12.1-2) ... 440s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 440s Setting up libmunge2:s390x (0.5.16-1) ... 440s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 440s Setting up libxcb-sync1:s390x (1.17.0-2) ... 440s Setting up libjsoncpp26:s390x (1.9.6-3) ... 440s Setting up fonts-dejavu-mono (2.37-8) ... 440s Setting up libhwloc15:s390x (2.12.0-1) ... 440s Setting up libmpc3:s390x (1.3.1-1build2) ... 440s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 440s Setting up fonts-dejavu-core (2.37-8) ... 440s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 440s Setting up libltdl7:s390x (2.5.4-4) ... 440s Setting up libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 440s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ... 440s Setting up libvulkan1:s390x (1.4.304.0-1) ... 440s Setting up autoconf (2.72-3ubuntu1) ... 440s Setting up libevent-extra-2.1-7t64:s390x (2.1.12-stable-10) ... 440s Setting up libwebp7:s390x (1.5.0-0.1) ... 440s Setting up libubsan1:s390x (15-20250404-0ubuntu1) ... 440s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 440s Setting up libnl-3-dev:s390x (3.7.0-2) ... 440s Setting up ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 440s Setting up libxshmfence1:s390x (1.3-1build5) ... 440s Setting up libxcb-randr0:s390x (1.17.0-2) ... 440s Setting up libasan8:s390x (15-20250404-0ubuntu1) ... 440s Setting up openmpi-common (5.0.7-1) ... 440s Setting up librdmacm1t64:s390x (56.0-4ubuntu1) ... 440s Setting up libxss1:s390x (1:1.2.3-1build3) ... 440s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 440s Setting up libisl23:s390x (0.27-1) ... 440s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 440s Setting up libcc1-0:s390x (15-20250404-0ubuntu1) ... 440s Setting up libsz2:s390x (1.1.3-1) ... 440s Setting up libitm1:s390x (15-20250404-0ubuntu1) ... 440s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 440s Setting up automake (1:1.17-3ubuntu1) ... 440s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 440s Setting up libfabric1:s390x (1.17.0-3.1) ... 440s Setting up mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 440s Setting up liblapack3:s390x (3.12.1-2) ... 440s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 440s Setting up libgbm1:s390x (25.0.3-1ubuntu2) ... 440s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 440s Setting up libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 440s Setting up libkim-api2:s390x (2.3.0-1ubuntu1) ... 440s Setting up libhwloc-plugins:s390x (2.12.0-1) ... 440s Setting up libtbbbind-2-5:s390x (2022.0.0-2) ... 440s Setting up libnl-route-3-dev:s390x (3.7.0-2) ... 440s Setting up libltdl-dev:s390x (2.5.4-4) ... 440s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 440s Setting up libevent-dev (2.1.12-stable-10) ... 440s Setting up libpmix2t64:s390x (5.0.6-5) ... 440s Setting up cpp-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 440s Setting up cpp-14 (14.2.0-19ubuntu2) ... 440s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 440s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 440s Setting up libhwloc-dev:s390x (2.12.0-1) ... 440s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 440s Setting up libgcc-14-dev:s390x (14.2.0-19ubuntu2) ... 440s Setting up libpmix-dev:s390x (5.0.6-5) ... 440s Setting up libgfortran-14-dev:s390x (14.2.0-19ubuntu2) ... 440s Setting up libopenmpi40:s390x (5.0.7-1) ... 440s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 440s Setting up libxft2:s390x (2.3.6-1build1) ... 440s Setting up libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 440s Setting up libglx0:s390x (1.7.0-1build1) ... 440s Setting up libproj25:s390x (9.5.1-1) ... 440s Setting up libpnetcdf6:s390x (1.14.0-2) ... 440s Setting up libtk8.6:s390x (8.6.16-1) ... 440s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 440s Setting up libtbb12:s390x (2022.0.0-2) ... 440s Setting up libibverbs-dev:s390x (56.0-4ubuntu1) ... 440s Setting up libcairo2:s390x (1.18.4-1) ... 440s Setting up gcc-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 440s Setting up libgl1:s390x (1.7.0-1build1) ... 440s Setting up libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 440s Setting up libglew2.2:s390x (2.2.0-4build1) ... 440s Setting up openmpi-bin (5.0.7-1) ... 440s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 440s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 440s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 440s Setting up gfortran-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 440s Setting up mpi-default-bin (1.18) ... 440s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 440s Setting up gcc-14 (14.2.0-19ubuntu2) ... 440s Setting up libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 440s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 440s Setting up liblammps0t64:s390x (20240207+dfsg-3build3) ... 440s Setting up libopenmpi-dev:s390x (5.0.7-1) ... 440s update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode 440s Setting up mpi-default-dev (1.18) ... 440s Setting up liblammps-dev (20240207+dfsg-3build3) ... 440s Setting up python3-lammps (20240207+dfsg-3build3) ... 440s Processing triggers for man-db (2.13.0-1) ... 441s Processing triggers for install-info (7.1.1-1) ... 441s Processing triggers for libc-bin (2.41-6ubuntu1) ... 535s autopkgtest [09:33:13]: test command1: cd python/examples; python3 demo.py 535s autopkgtest [09:33:13]: test command1: [----------------------- 536s LAMMPS (7 Feb 2024 - Update 1) 536s 536s Python output: 536s Natoms, mass, x[0][0] coord = 4000 1.0 0.2727243714666721 536s Temperature from compute = 0.750609109548371 536s Energy from equal-style variable = -5.748192616533703 536s Velocity component from atom-style variable = -0.008231833025308041 536s Volume from get_thermo = 4738.213693437576 536s Natoms from get_natoms = 4000 536s Global coords from gather_atoms = 0.2727243714666721 0.1442606170751015 0.02741951954247279 536s Changed x[0][0] via scatter_atoms = 1.272724371466672 536s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 536s using 1 OpenMP thread(s) per MPI task 536s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 536s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 536s 1 by 1 by 1 MPI processor grid 536s Created 4000 atoms 536s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 536s create_atoms CPU = 0.001 seconds 536s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 536s Neighbor list info ... 536s update: every = 20 steps, delay = 0 steps, check = no 536s max neighbors/atom: 2000, page size: 100000 536s master list distance cutoff = 2.8 536s ghost atom cutoff = 2.8 536s binsize = 1.4, bins = 12 12 12 536s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 536s (1) pair lj/cut, perpetual 536s attributes: half, newton on 536s pair build: half/bin/atomonly/newton 536s stencil: half/bin/3d 536s bin: standard 536s Setting up Verlet run ... 536s Unit style : lj 536s Current step : 0 536s Time step : 0.005 536s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 536s Step Temp E_pair E_mol TotEng Press 536s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 536s 100 0.75060911 -5.7481926 0 -4.6225604 0.24772341 536s Loop time of 0.224143 on 1 procs for 100 steps with 4000 atoms 536s 536s Performance: 192734.035 tau/day, 446.144 timesteps/s, 1.785 Matom-step/s 536s 102.1% CPU use with 1 MPI tasks x 1 OpenMP threads 536s 536s MPI task timing breakdown: 536s Section | min time | avg time | max time |%varavg| %total 536s --------------------------------------------------------------- 536s Pair | 0.18908 | 0.18908 | 0.18908 | 0.0 | 84.36 536s Neigh | 0.027761 | 0.027761 | 0.027761 | 0.0 | 12.39 536s Comm | 0.0032871 | 0.0032871 | 0.0032871 | 0.0 | 1.47 536s Output | 4.9284e-05 | 4.9284e-05 | 4.9284e-05 | 0.0 | 0.02 536s Modify | 0.0032183 | 0.0032183 | 0.0032183 | 0.0 | 1.44 536s Other | | 0.0007506 | | | 0.33 536s 536s Nlocal: 4000 ave 4000 max 4000 min 536s Histogram: 1 0 0 0 0 0 0 0 0 0 536s Nghost: 5770 ave 5770 max 5770 min 536s Histogram: 1 0 0 0 0 0 0 0 0 0 536s Neighs: 150293 ave 150293 max 150293 min 536s Histogram: 1 0 0 0 0 0 0 0 0 0 536s 536s Total # of neighbors = 150293 536s Ave neighs/atom = 37.57325 536s Neighbor list builds = 5 536s Dangerous builds not checked 536s Total wall time: 0:00:00 536s autopkgtest [09:33:14]: test command1: -----------------------] 537s autopkgtest [09:33:15]: test command1: - - - - - - - - - - results - - - - - - - - - - 537s command1 PASS 537s autopkgtest [09:33:15]: @@@@@@@@@@@@@@@@@@@@ summary 537s crack PASS 537s dipole PASS 537s ellipse PASS 537s flow PASS 537s friction PASS 537s hugo PASS 537s command1 PASS 555s nova [W] Using flock in prodstack6-s390x 555s Creating nova instance adt-questing-s390x-lammps-20250502-092418-juju-7f2275-prod-proposed-migration-environment-20-c4e45de4-9772-4333-b382-7a12df6400bf from image adt/ubuntu-questing-s390x-server-20250502.img (UUID 632ecfca-a19d-4f3a-af48-b7883fa0ccf2)... 555s nova [W] Timed out waiting for ceef6ab7-61ab-4ade-9988-a22478df8b55 to get deleted. 555s nova [W] Using flock in prodstack6-s390x 555s Creating nova instance adt-questing-s390x-lammps-20250502-092418-juju-7f2275-prod-proposed-migration-environment-20-c4e45de4-9772-4333-b382-7a12df6400bf from image adt/ubuntu-questing-s390x-server-20250502.img (UUID 632ecfca-a19d-4f3a-af48-b7883fa0ccf2)... 555s nova [W] Timed out waiting for 99a1aa4d-ad62-4b8a-b06c-7876924fb60c to get deleted.