0s autopkgtest [02:33:29]: starting date and time: 2025-05-02 02:33:29+0000 0s autopkgtest [02:33:29]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [02:33:29]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._7nh3ev0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libzstd --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libzstd/1.5.7+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-s390x-5.secgroup --name adt-questing-s390x-lammps-20250502-023329-juju-7f2275-prod-proposed-migration-environment-2-2f122b34-626a-4371-b5dd-84c4fc083d60 --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 120s autopkgtest [02:35:29]: testbed dpkg architecture: s390x 121s autopkgtest [02:35:30]: testbed apt version: 3.0.0 121s autopkgtest [02:35:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 121s autopkgtest [02:35:30]: testbed release detected to be: None 123s autopkgtest [02:35:32]: updating testbed package index (apt update) 124s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 124s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 124s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 125s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 125s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [190 kB] 125s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2281 kB] 126s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [57.4 kB] 126s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [216 kB] 126s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1061 kB] 127s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [15.9 kB] 129s Fetched 3931 kB in 5s (756 kB/s) 134s Reading package lists... 135s autopkgtest [02:35:44]: upgrading testbed (apt dist-upgrade and autopurge) 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 137s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 137s Starting 2 pkgProblemResolver with broken count: 0 137s Done 138s Entering ResolveByKeep 139s 140s Calculating upgrade... 141s The following packages will be upgraded: 141s libperl5.40 libzstd1 perl perl-base perl-modules-5.40 zstd 141s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Need to get 11.5 MB of archives. 141s After this operation, 32.8 kB of additional disk space will be used. 141s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libperl5.40 s390x 5.40.1-3 [4972 kB] 146s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl s390x 5.40.1-3 [262 kB] 146s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl-base s390x 5.40.1-3 [1954 kB] 148s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl-modules-5.40 all 5.40.1-3 [3217 kB] 151s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libzstd1 s390x 1.5.7+dfsg-1 [345 kB] 151s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main s390x zstd s390x 1.5.7+dfsg-1 [722 kB] 154s Fetched 11.5 MB in 11s (1073 kB/s) 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 154s Preparing to unpack .../libperl5.40_5.40.1-3_s390x.deb ... 154s Unpacking libperl5.40:s390x (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 154s Preparing to unpack .../perl_5.40.1-3_s390x.deb ... 154s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 154s Preparing to unpack .../perl-base_5.40.1-3_s390x.deb ... 154s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 154s Setting up perl-base (5.40.1-3) ... 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 154s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 154s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 155s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_s390x.deb ... 155s Unpacking libzstd1:s390x (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 155s Setting up libzstd1:s390x (1.5.7+dfsg-1) ... 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 155s Preparing to unpack .../zstd_1.5.7+dfsg-1_s390x.deb ... 155s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 155s Setting up perl-modules-5.40 (5.40.1-3) ... 155s Setting up zstd (1.5.7+dfsg-1) ... 155s Setting up libperl5.40:s390x (5.40.1-3) ... 155s Setting up perl (5.40.1-3) ... 155s Processing triggers for man-db (2.13.0-1) ... 156s Processing triggers for libc-bin (2.41-6ubuntu1) ... 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 158s Solving dependencies... 158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s autopkgtest [02:36:09]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr 6 13:39:00 UTC 2025 160s autopkgtest [02:36:09]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 270s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 270s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 270s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 270s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 270s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 270s gpgv: Can't check signature: No public key 270s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 311s autopkgtest [02:38:40]: testing package lammps version 20240207+dfsg-3build3 312s autopkgtest [02:38:41]: build not needed 339s autopkgtest [02:39:08]: test crack: preparing testbed 339s Reading package lists... 339s Building dependency tree... 339s Reading state information... 340s Starting pkgProblemResolver with broken count: 0 340s Starting 2 pkgProblemResolver with broken count: 0 340s Done 340s The following NEW packages will be installed: 340s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 340s libaec0 libblas3 libcairo2 libdeflate0 libdouble-conversion3 340s libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 libfontconfig1 340s libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 340s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 340s libhdf5-hl-310 libhwloc-plugins libhwloc15 libjbig0 libjpeg-turbo8 libjpeg8 340s libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 libmunge2 libnetcdf22 340s libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 libpmix2t64 340s libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 340s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 340s libtk8.6 libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 340s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 340s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 340s libxrender1 libxshmfence1 libxss1 libxxf86vm1 mesa-libgallium 340s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 340s x11-common 340s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. 340s Need to get 81.8 MB of archives. 340s After this operation, 365 MB of additional disk space will be used. 340s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 340s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 341s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 341s Get:4 http://ftpmaster.internal/ubuntu questing/universe s390x lammps-data all 20240207+dfsg-3build3 [9732 kB] 348s Get:5 http://ftpmaster.internal/ubuntu questing/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 348s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 348s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 348s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 348s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 348s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 348s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 348s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 348s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB] 348s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 348s Get:15 http://ftpmaster.internal/ubuntu questing/universe s390x libdouble-conversion3 s390x 3.3.1-1 [43.3 kB] 348s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10 [7870 B] 348s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x librdmacm1t64 s390x 56.0-4ubuntu1 [74.0 kB] 348s Get:18 http://ftpmaster.internal/ubuntu questing/universe s390x libfabric1 s390x 1.17.0-3.1 [558 kB] 348s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB] 348s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build1 [511 kB] 348s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x libwayland-server0 s390x 1.23.1-3 [37.3 kB] 348s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 348s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 348s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 348s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 348s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 348s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 348s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 348s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x mesa-libgallium s390x 25.0.3-1ubuntu2 [8057 kB] 349s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libgbm1 s390x 25.0.3-1ubuntu2 [34.5 kB] 349s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB] 349s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 349s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libgl1-mesa-dri s390x 25.0.3-1ubuntu2 [35.5 kB] 349s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 349s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 349s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 349s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libglx-mesa0 s390x 25.0.3-1ubuntu2 [161 kB] 349s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 349s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 349s Get:40 http://ftpmaster.internal/ubuntu questing/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 349s Get:41 http://ftpmaster.internal/ubuntu questing/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 349s Get:42 http://ftpmaster.internal/ubuntu questing/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 349s Get:43 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 349s Get:44 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 349s Get:45 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc15 s390x 2.12.0-1 [176 kB] 349s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 349s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 349s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 349s Get:49 http://ftpmaster.internal/ubuntu questing/universe s390x libkim-api2 s390x 2.3.0-1ubuntu1 [602 kB] 349s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 349s Get:51 http://ftpmaster.internal/ubuntu questing/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 349s Get:52 http://ftpmaster.internal/ubuntu questing/universe s390x libmunge2 s390x 0.5.16-1 [15.2 kB] 349s Get:53 http://ftpmaster.internal/ubuntu questing/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB] 349s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 349s Get:55 http://ftpmaster.internal/ubuntu questing/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1build1 [41.1 kB] 349s Get:56 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc-plugins s390x 2.12.0-1 [16.1 kB] 349s Get:57 http://ftpmaster.internal/ubuntu questing/universe s390x libpmix2t64 s390x 5.0.6-5 [715 kB] 349s Get:58 http://ftpmaster.internal/ubuntu questing/universe s390x libopenmpi40 s390x 5.0.7-1 [2196 kB] 350s Get:59 http://ftpmaster.internal/ubuntu questing/universe s390x libpnetcdf6 s390x 1.14.0-2 [1172 kB] 350s Get:60 http://ftpmaster.internal/ubuntu questing/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 350s Get:61 http://ftpmaster.internal/ubuntu questing/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 350s Get:62 http://ftpmaster.internal/ubuntu questing/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 350s Get:63 http://ftpmaster.internal/ubuntu questing/universe s390x proj-data all 9.5.1-1 [7924 kB] 350s Get:64 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 350s Get:65 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 350s Get:66 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 350s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 350s Get:68 http://ftpmaster.internal/ubuntu questing/universe s390x libproj25 s390x 9.5.1-1 [1452 kB] 350s Get:69 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbbind-2-5 s390x 2022.0.0-2 [15.3 kB] 350s Get:70 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbmalloc2 s390x 2022.0.0-2 [57.7 kB] 350s Get:71 http://ftpmaster.internal/ubuntu questing/universe s390x libtbb12 s390x 2022.0.0-2 [99.9 kB] 350s Get:72 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 350s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x libtheoradec1 s390x 1.2.0~alpha1+dfsg-6 [68.6 kB] 350s Get:74 http://ftpmaster.internal/ubuntu questing/main s390x libtheoraenc1 s390x 1.2.0~alpha1+dfsg-6 [142 kB] 350s Get:75 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 350s Get:76 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 350s Get:77 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 351s Get:78 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 351s Get:79 http://ftpmaster.internal/ubuntu questing/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-4ubuntu1 [27.1 MB] 353s Get:80 http://ftpmaster.internal/ubuntu questing/universe s390x liblammps0t64 s390x 20240207+dfsg-3build3 [7859 kB] 353s Get:81 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-common all 5.0.7-1 [97.9 kB] 353s Get:82 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-bin s390x 5.0.7-1 [200 kB] 353s Get:83 http://ftpmaster.internal/ubuntu questing/universe s390x mpi-default-bin s390x 1.18 [2510 B] 353s Get:84 http://ftpmaster.internal/ubuntu questing/universe s390x lammps s390x 20240207+dfsg-3build3 [15.3 kB] 354s Fetched 81.8 MB in 13s (6219 kB/s) 354s Selecting previously unselected package fonts-dejavu-mono. 354s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 354s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 354s Unpacking fonts-dejavu-mono (2.37-8) ... 354s Selecting previously unselected package fonts-dejavu-core. 354s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 354s Unpacking fonts-dejavu-core (2.37-8) ... 354s Selecting previously unselected package fontconfig-config. 354s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 354s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 354s Selecting previously unselected package lammps-data. 354s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 354s Unpacking lammps-data (20240207+dfsg-3build3) ... 355s Selecting previously unselected package libaec0:s390x. 355s Preparing to unpack .../04-libaec0_1.1.3-1_s390x.deb ... 355s Unpacking libaec0:s390x (1.1.3-1) ... 355s Selecting previously unselected package libblas3:s390x. 355s Preparing to unpack .../05-libblas3_3.12.1-2_s390x.deb ... 355s Unpacking libblas3:s390x (3.12.1-2) ... 355s Selecting previously unselected package libfreetype6:s390x. 355s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 355s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 355s Selecting previously unselected package libfontconfig1:s390x. 355s Preparing to unpack .../07-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 355s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 355s Selecting previously unselected package libpixman-1-0:s390x. 355s Preparing to unpack .../08-libpixman-1-0_0.44.0-3_s390x.deb ... 355s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 355s Selecting previously unselected package libxcb-render0:s390x. 355s Preparing to unpack .../09-libxcb-render0_1.17.0-2_s390x.deb ... 355s Unpacking libxcb-render0:s390x (1.17.0-2) ... 355s Selecting previously unselected package libxcb-shm0:s390x. 355s Preparing to unpack .../10-libxcb-shm0_1.17.0-2_s390x.deb ... 355s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 355s Selecting previously unselected package libxrender1:s390x. 355s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 355s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 355s Selecting previously unselected package libcairo2:s390x. 355s Preparing to unpack .../12-libcairo2_1.18.4-1_s390x.deb ... 355s Unpacking libcairo2:s390x (1.18.4-1) ... 355s Selecting previously unselected package libdeflate0:s390x. 355s Preparing to unpack .../13-libdeflate0_1.23-1_s390x.deb ... 355s Unpacking libdeflate0:s390x (1.23-1) ... 355s Selecting previously unselected package libdouble-conversion3:s390x. 355s Preparing to unpack .../14-libdouble-conversion3_3.3.1-1_s390x.deb ... 355s Unpacking libdouble-conversion3:s390x (3.3.1-1) ... 355s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 355s Preparing to unpack .../15-libevent-pthreads-2.1-7t64_2.1.12-stable-10_s390x.deb ... 355s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 355s Selecting previously unselected package librdmacm1t64:s390x. 355s Preparing to unpack .../16-librdmacm1t64_56.0-4ubuntu1_s390x.deb ... 355s Unpacking librdmacm1t64:s390x (56.0-4ubuntu1) ... 355s Selecting previously unselected package libfabric1:s390x. 355s Preparing to unpack .../17-libfabric1_1.17.0-3.1_s390x.deb ... 355s Unpacking libfabric1:s390x (1.17.0-3.1) ... 355s Selecting previously unselected package libgomp1:s390x. 355s Preparing to unpack .../18-libgomp1_15-20250404-0ubuntu1_s390x.deb ... 355s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ... 355s Selecting previously unselected package libfftw3-double3:s390x. 355s Preparing to unpack .../19-libfftw3-double3_3.3.10-2fakesync1build1_s390x.deb ... 355s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 355s Selecting previously unselected package libwayland-server0:s390x. 355s Preparing to unpack .../20-libwayland-server0_1.23.1-3_s390x.deb ... 355s Unpacking libwayland-server0:s390x (1.23.1-3) ... 355s Selecting previously unselected package libx11-xcb1:s390x. 355s Preparing to unpack .../21-libx11-xcb1_2%3a1.8.10-2_s390x.deb ... 355s Unpacking libx11-xcb1:s390x (2:1.8.10-2) ... 355s Selecting previously unselected package libxcb-dri3-0:s390x. 355s Preparing to unpack .../22-libxcb-dri3-0_1.17.0-2_s390x.deb ... 355s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 355s Selecting previously unselected package libxcb-present0:s390x. 355s Preparing to unpack .../23-libxcb-present0_1.17.0-2_s390x.deb ... 355s Unpacking libxcb-present0:s390x (1.17.0-2) ... 355s Selecting previously unselected package libxcb-randr0:s390x. 355s Preparing to unpack .../24-libxcb-randr0_1.17.0-2_s390x.deb ... 355s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 355s Selecting previously unselected package libxcb-sync1:s390x. 355s Preparing to unpack .../25-libxcb-sync1_1.17.0-2_s390x.deb ... 355s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 355s Selecting previously unselected package libxcb-xfixes0:s390x. 355s Preparing to unpack .../26-libxcb-xfixes0_1.17.0-2_s390x.deb ... 355s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 355s Selecting previously unselected package libxshmfence1:s390x. 355s Preparing to unpack .../27-libxshmfence1_1.3-1build5_s390x.deb ... 355s Unpacking libxshmfence1:s390x (1.3-1build5) ... 355s Selecting previously unselected package mesa-libgallium:s390x. 355s Preparing to unpack .../28-mesa-libgallium_25.0.3-1ubuntu2_s390x.deb ... 355s Unpacking mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 357s Selecting previously unselected package libgbm1:s390x. 357s Preparing to unpack .../29-libgbm1_25.0.3-1ubuntu2_s390x.deb ... 357s Unpacking libgbm1:s390x (25.0.3-1ubuntu2) ... 357s Selecting previously unselected package libgfortran5:s390x. 357s Preparing to unpack .../30-libgfortran5_15-20250404-0ubuntu1_s390x.deb ... 357s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ... 357s Selecting previously unselected package libvulkan1:s390x. 357s Preparing to unpack .../31-libvulkan1_1.4.304.0-1_s390x.deb ... 357s Unpacking libvulkan1:s390x (1.4.304.0-1) ... 357s Selecting previously unselected package libgl1-mesa-dri:s390x. 357s Preparing to unpack .../32-libgl1-mesa-dri_25.0.3-1ubuntu2_s390x.deb ... 357s Unpacking libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 357s Selecting previously unselected package libglvnd0:s390x. 357s Preparing to unpack .../33-libglvnd0_1.7.0-1build1_s390x.deb ... 357s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 357s Selecting previously unselected package libxcb-glx0:s390x. 357s Preparing to unpack .../34-libxcb-glx0_1.17.0-2_s390x.deb ... 357s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 357s Selecting previously unselected package libxxf86vm1:s390x. 357s Preparing to unpack .../35-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 357s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 357s Selecting previously unselected package libglx-mesa0:s390x. 357s Preparing to unpack .../36-libglx-mesa0_25.0.3-1ubuntu2_s390x.deb ... 357s Unpacking libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 357s Selecting previously unselected package libglx0:s390x. 357s Preparing to unpack .../37-libglx0_1.7.0-1build1_s390x.deb ... 357s Unpacking libglx0:s390x (1.7.0-1build1) ... 357s Selecting previously unselected package libgl1:s390x. 357s Preparing to unpack .../38-libgl1_1.7.0-1build1_s390x.deb ... 357s Unpacking libgl1:s390x (1.7.0-1build1) ... 357s Selecting previously unselected package libgl2ps1.4. 357s Preparing to unpack .../39-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 357s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 357s Selecting previously unselected package libglew2.2:s390x. 357s Preparing to unpack .../40-libglew2.2_2.2.0-4build1_s390x.deb ... 357s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 357s Selecting previously unselected package libsz2:s390x. 357s Preparing to unpack .../41-libsz2_1.1.3-1_s390x.deb ... 357s Unpacking libsz2:s390x (1.1.3-1) ... 357s Selecting previously unselected package libhdf5-310:s390x. 357s Preparing to unpack .../42-libhdf5-310_1.14.5+repack-3_s390x.deb ... 357s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 357s Selecting previously unselected package libhdf5-hl-310:s390x. 357s Preparing to unpack .../43-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 357s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 357s Selecting previously unselected package libhwloc15:s390x. 357s Preparing to unpack .../44-libhwloc15_2.12.0-1_s390x.deb ... 357s Unpacking libhwloc15:s390x (2.12.0-1) ... 357s Selecting previously unselected package libjpeg-turbo8:s390x. 357s Preparing to unpack .../45-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 357s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 357s Selecting previously unselected package libjpeg8:s390x. 357s Preparing to unpack .../46-libjpeg8_8c-2ubuntu11_s390x.deb ... 357s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 357s Selecting previously unselected package libjsoncpp26:s390x. 357s Preparing to unpack .../47-libjsoncpp26_1.9.6-3_s390x.deb ... 357s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 357s Selecting previously unselected package libkim-api2:s390x. 357s Preparing to unpack .../48-libkim-api2_2.3.0-1ubuntu1_s390x.deb ... 357s Unpacking libkim-api2:s390x (2.3.0-1ubuntu1) ... 357s Selecting previously unselected package liblapack3:s390x. 357s Preparing to unpack .../49-liblapack3_3.12.1-2_s390x.deb ... 357s Unpacking liblapack3:s390x (3.12.1-2) ... 357s Selecting previously unselected package libnetcdf22:s390x. 357s Preparing to unpack .../50-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 357s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 357s Selecting previously unselected package libmunge2:s390x. 357s Preparing to unpack .../51-libmunge2_0.5.16-1_s390x.deb ... 357s Unpacking libmunge2:s390x (0.5.16-1) ... 357s Selecting previously unselected package libpciaccess0:s390x. 357s Preparing to unpack .../52-libpciaccess0_0.17-3build1_s390x.deb ... 357s Unpacking libpciaccess0:s390x (0.17-3build1) ... 357s Selecting previously unselected package libxnvctrl0:s390x. 357s Preparing to unpack .../53-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 357s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 357s Selecting previously unselected package ocl-icd-libopencl1:s390x. 357s Preparing to unpack .../54-ocl-icd-libopencl1_2.3.2-1build1_s390x.deb ... 357s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 357s Selecting previously unselected package libhwloc-plugins:s390x. 357s Preparing to unpack .../55-libhwloc-plugins_2.12.0-1_s390x.deb ... 357s Unpacking libhwloc-plugins:s390x (2.12.0-1) ... 357s Selecting previously unselected package libpmix2t64:s390x. 357s Preparing to unpack .../56-libpmix2t64_5.0.6-5_s390x.deb ... 357s Unpacking libpmix2t64:s390x (5.0.6-5) ... 357s Selecting previously unselected package libopenmpi40:s390x. 357s Preparing to unpack .../57-libopenmpi40_5.0.7-1_s390x.deb ... 357s Unpacking libopenmpi40:s390x (5.0.7-1) ... 358s Selecting previously unselected package libpnetcdf6:s390x. 358s Preparing to unpack .../58-libpnetcdf6_1.14.0-2_s390x.deb ... 358s Unpacking libpnetcdf6:s390x (1.14.0-2) ... 359s Selecting previously unselected package libvoro++1. 359s Preparing to unpack .../59-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 359s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 359s Selecting previously unselected package libogg0:s390x. 359s Preparing to unpack .../60-libogg0_1.3.5-3build1_s390x.deb ... 359s Unpacking libogg0:s390x (1.3.5-3build1) ... 359s Selecting previously unselected package libopengl0:s390x. 359s Preparing to unpack .../61-libopengl0_1.7.0-1build1_s390x.deb ... 359s Unpacking libopengl0:s390x (1.7.0-1build1) ... 359s Selecting previously unselected package proj-data. 359s Preparing to unpack .../62-proj-data_9.5.1-1_all.deb ... 359s Unpacking proj-data (9.5.1-1) ... 359s Selecting previously unselected package libjbig0:s390x. 359s Preparing to unpack .../63-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 359s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 359s Selecting previously unselected package libsharpyuv0:s390x. 359s Preparing to unpack .../64-libsharpyuv0_1.5.0-0.1_s390x.deb ... 359s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 359s Selecting previously unselected package libwebp7:s390x. 359s Preparing to unpack .../65-libwebp7_1.5.0-0.1_s390x.deb ... 359s Unpacking libwebp7:s390x (1.5.0-0.1) ... 360s Selecting previously unselected package libtiff6:s390x. 360s Preparing to unpack .../66-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 360s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 360s Selecting previously unselected package libproj25:s390x. 360s Preparing to unpack .../67-libproj25_9.5.1-1_s390x.deb ... 360s Unpacking libproj25:s390x (9.5.1-1) ... 360s Selecting previously unselected package libtbbbind-2-5:s390x. 360s Preparing to unpack .../68-libtbbbind-2-5_2022.0.0-2_s390x.deb ... 360s Unpacking libtbbbind-2-5:s390x (2022.0.0-2) ... 360s Selecting previously unselected package libtbbmalloc2:s390x. 360s Preparing to unpack .../69-libtbbmalloc2_2022.0.0-2_s390x.deb ... 360s Unpacking libtbbmalloc2:s390x (2022.0.0-2) ... 360s Selecting previously unselected package libtbb12:s390x. 360s Preparing to unpack .../70-libtbb12_2022.0.0-2_s390x.deb ... 360s Unpacking libtbb12:s390x (2022.0.0-2) ... 360s Selecting previously unselected package libtcl8.6:s390x. 360s Preparing to unpack .../71-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 360s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 361s Selecting previously unselected package libtheoradec1:s390x. 361s Preparing to unpack .../72-libtheoradec1_1.2.0~alpha1+dfsg-6_s390x.deb ... 361s Unpacking libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 361s Selecting previously unselected package libtheoraenc1:s390x. 361s Preparing to unpack .../73-libtheoraenc1_1.2.0~alpha1+dfsg-6_s390x.deb ... 361s Unpacking libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 361s Selecting previously unselected package libxft2:s390x. 361s Preparing to unpack .../74-libxft2_2.3.6-1build1_s390x.deb ... 361s Unpacking libxft2:s390x (2.3.6-1build1) ... 361s Selecting previously unselected package x11-common. 361s Preparing to unpack .../75-x11-common_1%3a7.7+23ubuntu4_all.deb ... 361s Unpacking x11-common (1:7.7+23ubuntu4) ... 361s Selecting previously unselected package libxss1:s390x. 361s Preparing to unpack .../76-libxss1_1%3a1.2.3-1build3_s390x.deb ... 361s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 362s Selecting previously unselected package libtk8.6:s390x. 362s Preparing to unpack .../77-libtk8.6_8.6.16-1_s390x.deb ... 362s Unpacking libtk8.6:s390x (8.6.16-1) ... 362s Selecting previously unselected package libvtk9.3:s390x. 362s Preparing to unpack .../78-libvtk9.3_9.3.0+dfsg1-4ubuntu1_s390x.deb ... 362s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 373s Selecting previously unselected package liblammps0t64:s390x. 373s Preparing to unpack .../79-liblammps0t64_20240207+dfsg-3build3_s390x.deb ... 373s Unpacking liblammps0t64:s390x (20240207+dfsg-3build3) ... 375s Selecting previously unselected package openmpi-common. 375s Preparing to unpack .../80-openmpi-common_5.0.7-1_all.deb ... 375s Unpacking openmpi-common (5.0.7-1) ... 375s Selecting previously unselected package openmpi-bin. 375s Preparing to unpack .../81-openmpi-bin_5.0.7-1_s390x.deb ... 375s Unpacking openmpi-bin (5.0.7-1) ... 375s Selecting previously unselected package mpi-default-bin. 375s Preparing to unpack .../82-mpi-default-bin_1.18_s390x.deb ... 375s Unpacking mpi-default-bin (1.18) ... 376s Selecting previously unselected package lammps. 376s Preparing to unpack .../83-lammps_20240207+dfsg-3build3_s390x.deb ... 376s Unpacking lammps (20240207+dfsg-3build3) ... 376s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 376s Setting up libtbbmalloc2:s390x (2022.0.0-2) ... 376s Setting up libpixman-1-0:s390x (0.44.0-3) ... 376s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 376s Setting up libwayland-server0:s390x (1.23.1-3) ... 376s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 376s Setting up libpciaccess0:s390x (0.17-3build1) ... 376s Setting up libdouble-conversion3:s390x (3.3.1-1) ... 376s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 376s Setting up libogg0:s390x (1.3.5-3build1) ... 376s Setting up proj-data (9.5.1-1) ... 376s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 376s Setting up lammps-data (20240207+dfsg-3build3) ... 376s Setting up libxcb-render0:s390x (1.17.0-2) ... 376s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 376s Setting up libglvnd0:s390x (1.7.0-1build1) ... 376s Setting up libxcb-glx0:s390x (1.17.0-2) ... 376s Setting up x11-common (1:7.7+23ubuntu4) ... 377s Setting up libdeflate0:s390x (1.23-1) ... 377s Setting up libxcb-shm0:s390x (1.17.0-2) ... 377s Setting up libgomp1:s390x (15-20250404-0ubuntu1) ... 377s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 377s Setting up libaec0:s390x (1.1.3-1) ... 377s Setting up libopengl0:s390x (1.7.0-1build1) ... 377s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 377s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 377s Setting up libxcb-present0:s390x (1.17.0-2) ... 377s Setting up libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 377s Setting up libblas3:s390x (3.12.1-2) ... 377s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 377s Setting up libmunge2:s390x (0.5.16-1) ... 377s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 377s Setting up libxcb-sync1:s390x (1.17.0-2) ... 377s Setting up libjsoncpp26:s390x (1.9.6-3) ... 377s Setting up fonts-dejavu-mono (2.37-8) ... 377s Setting up libhwloc15:s390x (2.12.0-1) ... 377s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 377s Setting up fonts-dejavu-core (2.37-8) ... 377s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 377s Setting up libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 377s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ... 377s Setting up libvulkan1:s390x (1.4.304.0-1) ... 377s Setting up libwebp7:s390x (1.5.0-0.1) ... 377s Setting up ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 377s Setting up libxshmfence1:s390x (1.3-1build5) ... 377s Setting up libxcb-randr0:s390x (1.17.0-2) ... 377s Setting up openmpi-common (5.0.7-1) ... 377s Setting up librdmacm1t64:s390x (56.0-4ubuntu1) ... 377s Setting up libxss1:s390x (1:1.2.3-1build3) ... 377s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 377s Setting up libsz2:s390x (1.1.3-1) ... 377s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 377s Setting up libfabric1:s390x (1.17.0-3.1) ... 377s Setting up mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 377s Setting up liblapack3:s390x (3.12.1-2) ... 377s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 377s Setting up libgbm1:s390x (25.0.3-1ubuntu2) ... 377s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 377s Setting up libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 377s Setting up libkim-api2:s390x (2.3.0-1ubuntu1) ... 377s Setting up libhwloc-plugins:s390x (2.12.0-1) ... 377s Setting up libtbbbind-2-5:s390x (2022.0.0-2) ... 377s Setting up libpmix2t64:s390x (5.0.6-5) ... 377s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 377s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 377s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 377s Setting up libopenmpi40:s390x (5.0.7-1) ... 377s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 377s Setting up libxft2:s390x (2.3.6-1build1) ... 377s Setting up libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 377s Setting up libglx0:s390x (1.7.0-1build1) ... 377s Setting up libproj25:s390x (9.5.1-1) ... 377s Setting up libpnetcdf6:s390x (1.14.0-2) ... 377s Setting up libtk8.6:s390x (8.6.16-1) ... 377s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 377s Setting up libtbb12:s390x (2022.0.0-2) ... 377s Setting up libcairo2:s390x (1.18.4-1) ... 377s Setting up libgl1:s390x (1.7.0-1build1) ... 377s Setting up libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 377s Setting up libglew2.2:s390x (2.2.0-4build1) ... 377s Setting up openmpi-bin (5.0.7-1) ... 377s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 377s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 377s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 377s Setting up mpi-default-bin (1.18) ... 377s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 377s Setting up libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 377s Setting up liblammps0t64:s390x (20240207+dfsg-3build3) ... 377s Setting up lammps (20240207+dfsg-3build3) ... 377s Processing triggers for man-db (2.13.0-1) ... 379s Processing triggers for libc-bin (2.41-6ubuntu1) ... 380s autopkgtest [02:39:49]: test crack: [----------------------- 380s LAMMPS (7 Feb 2024 - Update 1) 380s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 380s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 380s using 1 OpenMP thread(s) per MPI task 380s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 380s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 380s 2 by 1 by 1 MPI processor grid 380s Created 8141 atoms 380s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 380s create_atoms CPU = 0.001 seconds 380s 302 atoms in group lower 380s 302 atoms in group upper 380s 604 atoms in group boundary 380s 7537 atoms in group mobile 380s 841 atoms in group leftupper 380s 841 atoms in group leftlower 380s Setting atom values ... 380s 841 settings made for type 380s Setting atom values ... 380s 841 settings made for type 380s Setting atom values ... 380s 302 settings made for type 380s Setting atom values ... 380s 302 settings made for type 380s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 380s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 380s Neighbor list info ... 380s update: every = 1 steps, delay = 5 steps, check = yes 380s max neighbors/atom: 2000, page size: 100000 380s master list distance cutoff = 2.8 380s ghost atom cutoff = 2.8 380s binsize = 1.4, bins = 80 56 1 380s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 380s (1) pair lj/cut, perpetual 380s attributes: half, newton on 380s pair build: half/bin/atomonly/newton 380s stencil: half/bin/2d 380s bin: standard 380s Setting up Verlet run ... 380s Unit style : lj 380s Current step : 0 380s Time step : 0.003 380s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 380s Step Temp E_pair E_mol TotEng Press Volume 380s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 380s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 380s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 380s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 381s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 382s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 383s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 384s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 384s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 386s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 387s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 388s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 391s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 392s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 393s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 393s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 395s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 395s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 396s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 399s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 404s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 410s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 413s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 416s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 418s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 418s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 418s Loop time of 38.3966 on 2 procs for 5000 steps with 8141 atoms 418s 418s Performance: 33753.016 tau/day, 130.220 timesteps/s, 1.060 Matom-step/s 418s 21.5% CPU use with 2 MPI tasks x 1 OpenMP threads 418s 418s MPI task timing breakdown: 418s Section | min time | avg time | max time |%varavg| %total 418s --------------------------------------------------------------- 418s Pair | 8.9102 | 9.8154 | 10.721 | 28.9 | 25.56 418s Neigh | 0.59293 | 0.62966 | 0.6664 | 4.6 | 1.64 418s Comm | 22.426 | 24.216 | 26.006 | 36.4 | 63.07 418s Output | 0.030269 | 0.047472 | 0.064674 | 7.9 | 0.12 418s Modify | 0.92572 | 1.0587 | 1.1917 | 12.9 | 2.76 418s Other | | 2.629 | | | 6.85 418s 418s Nlocal: 4070.5 ave 4085 max 4056 min 418s Histogram: 1 0 0 0 0 0 0 0 0 1 418s Nghost: 207 ave 208 max 206 min 418s Histogram: 1 0 0 0 0 0 0 0 0 1 418s Neighs: 35700 ave 35927 max 35473 min 418s Histogram: 1 0 0 0 0 0 0 0 0 1 418s 418s Total # of neighbors = 71400 418s Ave neighs/atom = 8.7704213 418s Neighbor list builds = 106 418s Dangerous builds = 0 418s Total wall time: 0:00:38 419s LAMMPS (7 Feb 2024 - Update 1) 442s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 442s using 1 OpenMP thread(s) per MPI task 442s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 442s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 442s 1 by 1 by 1 MPI processor grid 442s Created 8141 atoms 442s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 442s create_atoms CPU = 0.002 seconds 442s 302 atoms in group lower 442s 302 atoms in group upper 442s 604 atoms in group boundary 442s 7537 atoms in group mobile 442s 841 atoms in group leftupper 442s 841 atoms in group leftlower 442s Setting atom values ... 442s 841 settings made for type 442s Setting atom values ... 442s 841 settings made for type 442s Setting atom values ... 442s 302 settings made for type 442s Setting atom values ... 442s 302 settings made for type 442s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 442s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 442s Neighbor list info ... 442s update: every = 1 steps, delay = 5 steps, check = yes 442s max neighbors/atom: 2000, page size: 100000 442s master list distance cutoff = 2.8 442s ghost atom cutoff = 2.8 442s binsize = 1.4, bins = 80 56 1 442s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 442s (1) pair lj/cut, perpetual 442s attributes: half, newton on 442s pair build: half/bin/atomonly/newton 442s stencil: half/bin/2d 442s bin: standard 442s Setting up Verlet run ... 442s Unit style : lj 442s Current step : 0 442s Time step : 0.003 442s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 442s Step Temp E_pair E_mol TotEng Press Volume 442s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 442s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 442s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 442s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 442s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 442s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 442s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 442s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 442s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 442s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 442s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 442s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 442s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 442s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 442s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 442s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 442s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 442s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 442s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 442s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 442s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 442s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 442s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 444s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 444s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 444s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 444s Loop time of 25.8449 on 1 procs for 5000 steps with 8141 atoms 444s 444s Performance: 50145.384 tau/day, 193.462 timesteps/s, 1.575 Matom-step/s 444s 25.9% CPU use with 1 MPI tasks x 1 OpenMP threads 444s 444s MPI task timing breakdown: 444s Section | min time | avg time | max time |%varavg| %total 444s --------------------------------------------------------------- 444s Pair | 22.062 | 22.062 | 22.062 | 0.0 | 85.36 444s Neigh | 1.1147 | 1.1147 | 1.1147 | 0.0 | 4.31 444s Comm | 0.0039909 | 0.0039909 | 0.0039909 | 0.0 | 0.02 444s Output | 0.33188 | 0.33188 | 0.33188 | 0.0 | 1.28 444s Modify | 2.1205 | 2.1205 | 2.1205 | 0.0 | 8.20 444s Other | | 0.2123 | | | 0.82 444s 444s Nlocal: 8141 ave 8141 max 8141 min 444s Histogram: 1 0 0 0 0 0 0 0 0 0 444s Nghost: 0 ave 0 max 0 min 444s Histogram: 1 0 0 0 0 0 0 0 0 0 444s Neighs: 71389 ave 71389 max 71389 min 444s Histogram: 1 0 0 0 0 0 0 0 0 0 444s 444s Total # of neighbors = 71389 444s Ave neighs/atom = 8.7690701 444s Neighbor list builds = 100 444s Dangerous builds = 0 444s Total wall time: 0:00:25 444s run: OK 445s autopkgtest [02:40:54]: test crack: -----------------------] 446s autopkgtest [02:40:55]: test crack: - - - - - - - - - - results - - - - - - - - - - 446s crack PASS 446s autopkgtest [02:40:55]: test dipole: preparing testbed 447s Reading package lists... 448s Building dependency tree... 448s Reading state information... 449s Starting pkgProblemResolver with broken count: 0 449s Starting 2 pkgProblemResolver with broken count: 0 449s Done 449s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 450s autopkgtest [02:40:59]: test dipole: [----------------------- 451s LAMMPS (7 Feb 2024 - Update 1) 451s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 451s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 451s using 1 OpenMP thread(s) per MPI task 451s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 451s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 451s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 451s 2 by 1 by 1 MPI processor grid 451s Created 200 atoms 451s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 451s create_atoms CPU = 0.000 seconds 451s Setting atom values ... 451s 200 settings made for mass 451s Setting atom values ... 451s 200 settings made for dipole/random 451s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 451s Neighbor list info ... 451s update: every = 1 steps, delay = 0 steps, check = yes 451s max neighbors/atom: 2000, page size: 100000 451s master list distance cutoff = 2.8 451s ghost atom cutoff = 2.8 451s binsize = 1.4, bins = 13 13 2 451s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 451s (1) pair lj/cut/dipole/cut, perpetual 451s attributes: half, newton on 451s pair build: half/bin/atomonly/newton 451s stencil: half/bin/2d 451s bin: standard 451s Setting up Verlet run ... 451s Unit style : lj 451s Current step : 0 451s Time step : 0.005 451s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 451s Step Temp E_pair c_erot TotEng Press 451s 0 0 -2.1717485 0 -2.1717485 -2.5549017 451s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 451s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 451s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 451s 2000 0.41682156 -2.8150619 0.2305314 -2.4003245 -0.12755885 451s 2500 0.4223725 -2.7993826 0.21202048 -2.3791219 -0.42760254 451s 3000 0.40674172 -2.7701159 0.20435228 -2.3654079 0.12191183 451s 3500 0.41566211 -2.7940342 0.2127683 -2.3804504 -0.047420259 451s 4000 0.39899304 -2.7922419 0.23261768 -2.3952438 -0.5584713 452s 4500 0.41521411 -2.7902637 0.21553109 -2.3771257 -0.39868711 452s 5000 0.43435521 -2.7839342 0.20079255 -2.3517508 -0.23557371 453s 5500 0.43573361 -2.832029 0.24954704 -2.3984741 -0.30757008 453s 6000 0.43444077 -2.7971759 0.22707649 -2.3649073 -0.050026659 453s 6500 0.45018406 -2.802489 0.21507806 -2.3545558 -0.24632195 453s 7000 0.50302088 -2.8284285 0.19272668 -2.3279228 0.21477101 453s 7500 0.40216423 -2.7684646 0.24505695 -2.3683112 -0.038037764 454s 8000 0.41559297 -2.759803 0.23021572 -2.346288 -0.2498825 454s 8500 0.44167949 -2.7440933 0.20455344 -2.3046222 0.035670346 454s 9000 0.4218566 -2.7577529 0.23796636 -2.3380055 -0.4366142 454s 9500 0.46009563 -2.7683135 0.2289365 -2.3105184 -0.11500533 454s 10000 0.41474987 -2.747283 0.25293544 -2.3346069 -0.20525996 454s Loop time of 3.74792 on 2 procs for 10000 steps with 200 atoms 454s 454s Performance: 1152638.950 tau/day, 2668.146 timesteps/s, 533.629 katom-step/s 454s 32.0% CPU use with 2 MPI tasks x 1 OpenMP threads 454s 454s MPI task timing breakdown: 454s Section | min time | avg time | max time |%varavg| %total 454s --------------------------------------------------------------- 454s Pair | 0.64813 | 0.65276 | 0.65739 | 0.6 | 17.42 454s Neigh | 0.031483 | 0.033159 | 0.034835 | 0.9 | 0.88 454s Comm | 1.8008 | 1.9885 | 2.1762 | 13.3 | 53.06 454s Output | 0.00027412 | 0.0010463 | 0.0018184 | 2.4 | 0.03 454s Modify | 0.13993 | 0.32704 | 0.51415 | 32.7 | 8.73 454s Other | | 0.7454 | | | 19.89 454s 454s Nlocal: 100 ave 100 max 100 min 454s Histogram: 2 0 0 0 0 0 0 0 0 0 454s Nghost: 122.5 ave 125 max 120 min 454s Histogram: 1 0 0 0 0 0 0 0 0 1 454s Neighs: 801 ave 817 max 785 min 454s Histogram: 1 0 0 0 0 0 0 0 0 1 454s 454s Total # of neighbors = 1602 454s Ave neighs/atom = 8.01 454s Neighbor list builds = 681 454s Dangerous builds = 0 454s Total wall time: 0:00:03 454s LAMMPS (7 Feb 2024 - Update 1) 458s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 458s using 1 OpenMP thread(s) per MPI task 458s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 458s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 458s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 458s 1 by 1 by 1 MPI processor grid 458s Created 200 atoms 458s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 458s create_atoms CPU = 0.000 seconds 458s Setting atom values ... 458s 200 settings made for mass 458s Setting atom values ... 458s 200 settings made for dipole/random 458s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 458s Neighbor list info ... 458s update: every = 1 steps, delay = 0 steps, check = yes 458s max neighbors/atom: 2000, page size: 100000 458s master list distance cutoff = 2.8 458s ghost atom cutoff = 2.8 458s binsize = 1.4, bins = 13 13 2 458s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 458s (1) pair lj/cut/dipole/cut, perpetual 458s attributes: half, newton on 458s pair build: half/bin/atomonly/newton 458s stencil: half/bin/2d 458s bin: standard 458s Setting up Verlet run ... 458s Unit style : lj 458s Current step : 0 458s Time step : 0.005 458s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 458s Step Temp E_pair c_erot TotEng Press 458s 0 0 -2.1717485 0 -2.1717485 -2.5549017 458s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 458s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 458s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355613 458s 2000 0.4168217 -2.8150621 0.2305314 -2.4003245 -0.12755874 458s 2500 0.42235256 -2.79937 0.21201967 -2.3791292 -0.42752528 458s 3000 0.40118286 -2.7566267 0.19795371 -2.3574498 0.17122949 458s 3500 0.41913359 -2.789969 0.21614734 -2.3729311 -0.22517024 458s 4000 0.4121296 -2.7638868 0.20353041 -2.3538179 -0.07160792 458s 4500 0.45366888 -2.8425735 0.24841497 -2.391173 0.11913846 458s 5000 0.4311204 -2.8002159 0.22949783 -2.3712511 0.23492578 458s 5500 0.44426372 -2.7935996 0.21466537 -2.3515572 0.16360579 458s 6000 0.43178553 -2.7534884 0.19794383 -2.3238618 -0.16038048 458s 6500 0.4124462 -2.7482024 0.21992912 -2.3378185 -0.18038226 458s 7000 0.41507218 -2.7528753 0.21771614 -2.3398785 -0.062657125 458s 7500 0.45230794 -2.7783727 0.21423215 -2.3283263 -0.044538456 458s 8000 0.42726335 -2.7931306 0.26364827 -2.3680036 -0.24929222 458s 8500 0.41614819 -2.7456553 0.23149494 -2.3315878 0.059511435 458s 9000 0.46797377 -2.791191 0.21950369 -2.3255571 -0.094337938 458s 9500 0.44990418 -2.7984325 0.24896606 -2.3507778 -0.34897551 458s 10000 0.45951563 -2.7688659 0.21262443 -2.3116478 -0.29263014 458s Loop time of 3.07169 on 1 procs for 10000 steps with 200 atoms 458s 458s Performance: 1406392.367 tau/day, 3255.538 timesteps/s, 651.108 katom-step/s 458s 26.9% CPU use with 1 MPI tasks x 1 OpenMP threads 458s 458s MPI task timing breakdown: 458s Section | min time | avg time | max time |%varavg| %total 458s --------------------------------------------------------------- 458s Pair | 2.7201 | 2.7201 | 2.7201 | 0.0 | 88.55 458s Neigh | 0.14662 | 0.14662 | 0.14662 | 0.0 | 4.77 458s Comm | 0.036421 | 0.036421 | 0.036421 | 0.0 | 1.19 458s Output | 0.00025597 | 0.00025597 | 0.00025597 | 0.0 | 0.01 458s Modify | 0.15835 | 0.15835 | 0.15835 | 0.0 | 5.16 458s Other | | 0.009954 | | | 0.32 458s 458s Nlocal: 200 ave 200 max 200 min 458s Histogram: 1 0 0 0 0 0 0 0 0 0 458s Nghost: 146 ave 146 max 146 min 458s Histogram: 1 0 0 0 0 0 0 0 0 0 458s Neighs: 1608 ave 1608 max 1608 min 458s Histogram: 1 0 0 0 0 0 0 0 0 0 458s 458s Total # of neighbors = 1608 458s Ave neighs/atom = 8.04 458s Neighbor list builds = 685 458s Dangerous builds = 0 458s Total wall time: 0:00:03 458s run: OK 458s autopkgtest [02:41:07]: test dipole: -----------------------] 458s dipole PASS 458s autopkgtest [02:41:07]: test dipole: - - - - - - - - - - results - - - - - - - - - - 459s autopkgtest [02:41:08]: test ellipse: preparing testbed 459s Reading package lists... 459s Building dependency tree... 459s Reading state information... 459s Starting pkgProblemResolver with broken count: 0 459s Starting 2 pkgProblemResolver with broken count: 0 459s Done 460s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 461s autopkgtest [02:41:10]: test ellipse: [----------------------- 461s LAMMPS (7 Feb 2024 - Update 1) 461s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 461s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 461s using 1 OpenMP thread(s) per MPI task 461s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 461s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 461s 2 by 1 by 1 MPI processor grid 461s Created 400 atoms 461s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 461s create_atoms CPU = 0.000 seconds 461s Setting atom values ... 461s 48 settings made for type/fraction 461s Setting atom values ... 461s 352 settings made for mass 461s Setting atom values ... 461s 48 settings made for mass 461s Setting atom values ... 461s 352 settings made for shape 461s Setting atom values ... 461s 48 settings made for shape 461s Setting atom values ... 461s 400 settings made for quat/random 461s 352 atoms in group spheroid 461s 461s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 461s 461s Your simulation uses code contributions which should be cited: 461s - pair gayberne command: doi:10.1063/1.3058435 461s The log file lists these citations in BibTeX format. 461s 461s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 461s 461s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 461s Neighbor list info ... 461s update: every = 1 steps, delay = 0 steps, check = yes 461s max neighbors/atom: 2000, page size: 100000 461s master list distance cutoff = 4.8 461s ghost atom cutoff = 4.8 461s binsize = 2.4, bins = 59 59 3 461s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 461s (1) pair gayberne, perpetual 461s attributes: half, newton on 461s pair build: half/bin/atomonly/newton 461s stencil: half/bin/2d 461s bin: standard 461s Setting up Verlet run ... 461s Unit style : lj 461s Current step : 0 461s Time step : 0.002 461s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 461s Step c_rot E_pair TotEng Press Volume 461s 0 2.2638298 0 2.394 0.04788 20000 461s 100 1.7507088 0 1.8513745 0.036020794 20558.953 461s 200 2.2704785 0 2.401031 0.046552815 20630.598 461s 300 1.862122 0 1.969194 0.042610426 18485.56 461s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 461s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 461s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 461s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 461s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 461s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 461s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 461s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 461s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 461s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 461s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 461s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 461s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 461s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 461s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 461s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 461s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 461s Loop time of 0.546791 on 2 procs for 2000 steps with 400 atoms 461s 461s Performance: 632051.695 tau/day, 3657.707 timesteps/s, 1.463 Matom-step/s 461s 99.6% CPU use with 2 MPI tasks x 1 OpenMP threads 461s 461s MPI task timing breakdown: 461s Section | min time | avg time | max time |%varavg| %total 461s --------------------------------------------------------------- 461s Pair | 0.35644 | 0.37263 | 0.38882 | 2.7 | 68.15 461s Neigh | 0.013552 | 0.013555 | 0.013558 | 0.0 | 2.48 461s Comm | 0.025921 | 0.042151 | 0.058382 | 7.9 | 7.71 461s Output | 0.011702 | 0.011758 | 0.011813 | 0.1 | 2.15 461s Modify | 0.099547 | 0.10121 | 0.10287 | 0.5 | 18.51 461s Other | | 0.00549 | | | 1.00 461s 461s Nlocal: 200 ave 227 max 173 min 461s Histogram: 1 0 0 0 0 0 0 0 0 1 461s Nghost: 204 ave 206 max 202 min 461s Histogram: 1 0 0 0 0 0 0 0 0 1 461s Neighs: 1479.5 ave 1784 max 1175 min 461s Histogram: 1 0 0 0 0 0 0 0 0 1 461s 461s Total # of neighbors = 2959 461s Ave neighs/atom = 7.3975 461s Neighbor list builds = 348 461s Dangerous builds = 0 461s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 461s Setting up Verlet run ... 461s Unit style : lj 461s Current step : 2000 461s Time step : 0.002 461s Per MPI rank memory allocation (min/avg/max) = 6.9 | 6.9 | 6.9 Mbytes 461s Step c_rot E_pair TotEng Press Volume 461s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 461s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 461s 2200 1.9590367 -3.3182662 -1.3678333 0.35910433 1149.0282 461s 2300 2.0250309 -3.3891121 -1.3644964 0.46285769 1149.0282 461s 2400 2.085533 -3.4551199 -1.3401904 0.61189864 1149.0282 462s 2500 2.077574 -3.4482359 -1.3340251 1.0190852 1149.0282 462s 2600 2.0840722 -3.4558292 -1.3514352 0.7597702 1149.0282 462s 2700 2.1174248 -3.4915978 -1.3720622 0.82088405 1149.0282 463s 2800 2.0120484 -3.3803498 -1.3351386 1.0472272 1149.0282 463s 2900 2.095772 -3.4692917 -1.3762115 0.6503267 1149.0282 463s 3000 2.005185 -3.3743963 -1.3771538 0.74858505 1149.0282 464s 3100 2.0635196 -3.4375558 -1.3792354 0.72379626 1149.0282 464s 3200 2.0131468 -3.3825952 -1.3703433 1.1087307 1149.0282 464s 3300 2.0467878 -3.4185419 -1.3532024 0.7400243 1149.0282 464s 3400 1.9629403 -3.328306 -1.3871127 0.78865882 1149.0282 464s 3500 2.0576813 -3.4288036 -1.3361687 0.72305492 1149.0282 465s 3600 1.9638286 -3.3256476 -1.3663274 0.83792378 1149.0282 465s 3700 1.9900562 -3.3535764 -1.3259922 0.4389563 1149.0282 466s 3800 1.9016735 -3.2598525 -1.3493967 0.56256005 1149.0282 466s 3900 2.002131 -3.3658151 -1.3768647 0.59924524 1149.0282 466s 4000 1.9750784 -3.33731 -1.3724406 0.70702486 1149.0282 466s Loop time of 4.5786 on 2 procs for 2000 steps with 400 atoms 466s 466s Performance: 75481.652 tau/day, 436.815 timesteps/s, 174.726 katom-step/s 466s 28.1% CPU use with 2 MPI tasks x 1 OpenMP threads 466s 466s MPI task timing breakdown: 466s Section | min time | avg time | max time |%varavg| %total 466s --------------------------------------------------------------- 466s Pair | 0.59413 | 0.8923 | 1.1905 | 31.6 | 19.49 466s Neigh | 0.0062354 | 0.0082365 | 0.010238 | 2.2 | 0.18 466s Comm | 2.948 | 3.2615 | 3.575 | 17.4 | 71.23 466s Output | 0.024068 | 0.033945 | 0.043823 | 5.4 | 0.74 466s Modify | 0.078942 | 0.10946 | 0.13997 | 9.2 | 2.39 466s Other | | 0.2731 | | | 5.97 466s 466s Nlocal: 200 ave 242 max 158 min 466s Histogram: 1 0 0 0 0 0 0 0 0 1 466s Nghost: 186 ave 206 max 166 min 466s Histogram: 1 0 0 0 0 0 0 0 0 1 466s Neighs: 1548.5 ave 2045 max 1052 min 466s Histogram: 1 0 0 0 0 0 0 0 0 1 466s 466s Total # of neighbors = 3097 466s Ave neighs/atom = 7.7425 466s Neighbor list builds = 48 466s Dangerous builds = 0 466s Total wall time: 0:00:05 466s LAMMPS (7 Feb 2024 - Update 1) 470s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 470s using 1 OpenMP thread(s) per MPI task 470s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 470s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 470s 1 by 1 by 1 MPI processor grid 470s Created 400 atoms 470s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 470s create_atoms CPU = 0.000 seconds 470s Setting atom values ... 470s 48 settings made for type/fraction 470s Setting atom values ... 470s 352 settings made for mass 470s Setting atom values ... 470s 48 settings made for mass 470s Setting atom values ... 470s 352 settings made for shape 470s Setting atom values ... 470s 48 settings made for shape 470s Setting atom values ... 470s 400 settings made for quat/random 470s 352 atoms in group spheroid 470s 470s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 470s 470s Your simulation uses code contributions which should be cited: 470s - pair gayberne command: doi:10.1063/1.3058435 470s The log file lists these citations in BibTeX format. 470s 470s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 470s 470s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 470s Neighbor list info ... 470s update: every = 1 steps, delay = 0 steps, check = yes 470s max neighbors/atom: 2000, page size: 100000 470s master list distance cutoff = 4.8 470s ghost atom cutoff = 4.8 470s binsize = 2.4, bins = 59 59 3 470s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 470s (1) pair gayberne, perpetual 470s attributes: half, newton on 470s pair build: half/bin/atomonly/newton 470s stencil: half/bin/2d 470s bin: standard 470s Setting up Verlet run ... 470s Unit style : lj 470s Current step : 0 470s Time step : 0.002 470s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 470s Step c_rot E_pair TotEng Press Volume 470s 0 2.2638298 0 2.394 0.04788 20000 470s 100 1.7507088 0 1.8513745 0.036020794 20558.953 470s 200 2.2704785 0 2.401031 0.046552815 20630.598 470s 300 1.862122 0 1.969194 0.042610426 18485.56 470s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 470s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 470s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 470s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 470s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 470s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 470s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 470s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 470s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 470s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 470s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 470s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 470s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 470s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 470s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 470s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 470s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 470s Loop time of 3.70524 on 1 procs for 2000 steps with 400 atoms 470s 470s Performance: 93273.231 tau/day, 539.776 timesteps/s, 215.910 katom-step/s 470s 27.1% CPU use with 1 MPI tasks x 1 OpenMP threads 470s 470s MPI task timing breakdown: 470s Section | min time | avg time | max time |%varavg| %total 470s --------------------------------------------------------------- 470s Pair | 2.824 | 2.824 | 2.824 | 0.0 | 76.22 472s Neigh | 0.10062 | 0.10062 | 0.10062 | 0.0 | 2.72 472s Comm | 0.014199 | 0.014199 | 0.014199 | 0.0 | 0.38 472s Output | 0.039262 | 0.039262 | 0.039262 | 0.0 | 1.06 472s Modify | 0.72257 | 0.72257 | 0.72257 | 0.0 | 19.50 472s Other | | 0.004602 | | | 0.12 472s 472s Nlocal: 400 ave 400 max 400 min 472s Histogram: 1 0 0 0 0 0 0 0 0 0 472s Nghost: 255 ave 255 max 255 min 472s Histogram: 1 0 0 0 0 0 0 0 0 0 472s Neighs: 2959 ave 2959 max 2959 min 472s Histogram: 1 0 0 0 0 0 0 0 0 0 472s 472s Total # of neighbors = 2959 472s Ave neighs/atom = 7.3975 472s Neighbor list builds = 348 472s Dangerous builds = 0 472s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 472s Setting up Verlet run ... 472s Unit style : lj 472s Current step : 2000 472s Time step : 0.002 472s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 472s Step c_rot E_pair TotEng Press Volume 472s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 472s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 472s 2200 1.9590368 -3.3182663 -1.3678333 0.35910425 1149.0282 472s 2300 2.0250308 -3.3891119 -1.3644964 0.46285779 1149.0282 472s 2400 2.0855331 -3.45512 -1.3401904 0.61189841 1149.0282 472s 2500 2.0775737 -3.4482356 -1.3340258 1.0190836 1149.0282 472s 2600 2.084072 -3.4558289 -1.3514359 0.75976918 1149.0282 472s 2700 2.1174308 -3.4916046 -1.3720664 0.82086811 1149.0282 472s 2800 2.0120441 -3.3803491 -1.3351469 1.047208 1149.0282 472s 2900 2.0957766 -3.4692999 -1.376208 0.65043335 1149.0282 472s 3000 2.00512 -3.3743288 -1.3771585 0.7487656 1149.0282 472s 3100 2.0635277 -3.4376031 -1.3792202 0.72375619 1149.0282 472s 3200 2.0130716 -3.3825107 -1.3702334 1.1098674 1149.0282 472s 3300 2.0463568 -3.4179583 -1.3534773 0.73871011 1149.0282 472s 3400 1.9649348 -3.3304023 -1.3860539 0.77548498 1149.0282 472s 3500 2.0501941 -3.4213612 -1.3373407 0.73278199 1149.0282 472s 3600 1.9881829 -3.3519947 -1.3795107 0.73402726 1149.0282 472s 3700 1.9994085 -3.3655341 -1.3599281 0.3911747 1149.0282 472s 3800 1.963869 -3.3264036 -1.3599099 0.50519594 1149.0282 472s 3900 1.9970107 -3.3624111 -1.3743885 1.0960718 1149.0282 472s 4000 2.0620245 -3.4315752 -1.3998675 0.54966642 1149.0282 472s Loop time of 2.51302 on 1 procs for 2000 steps with 400 atoms 472s 472s Performance: 137523.904 tau/day, 795.856 timesteps/s, 318.342 katom-step/s 472s 44.4% CPU use with 1 MPI tasks x 1 OpenMP threads 472s 472s MPI task timing breakdown: 472s Section | min time | avg time | max time |%varavg| %total 472s --------------------------------------------------------------- 472s Pair | 2.1195 | 2.1195 | 2.1195 | 0.0 | 84.34 472s Neigh | 0.062968 | 0.062968 | 0.062968 | 0.0 | 2.51 472s Comm | 0.019179 | 0.019179 | 0.019179 | 0.0 | 0.76 472s Output | 0.044425 | 0.044425 | 0.044425 | 0.0 | 1.77 472s Modify | 0.26216 | 0.26216 | 0.26216 | 0.0 | 10.43 472s Other | | 0.004798 | | | 0.19 472s 472s Nlocal: 400 ave 400 max 400 min 472s Histogram: 1 0 0 0 0 0 0 0 0 0 472s Nghost: 240 ave 240 max 240 min 472s Histogram: 1 0 0 0 0 0 0 0 0 0 472s Neighs: 3096 ave 3096 max 3096 min 472s Histogram: 1 0 0 0 0 0 0 0 0 0 472s 472s Total # of neighbors = 3096 472s Ave neighs/atom = 7.74 472s Neighbor list builds = 49 472s Dangerous builds = 0 472s Total wall time: 0:00:06 472s LAMMPS (7 Feb 2024 - Update 1) 472s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 472s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 472s using 1 OpenMP thread(s) per MPI task 472s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 472s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 472s 2 by 1 by 1 MPI processor grid 472s Created 400 atoms 472s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 472s create_atoms CPU = 0.001 seconds 472s Setting atom values ... 472s 48 settings made for type/fraction 472s Setting atom values ... 472s 352 settings made for mass 472s Setting atom values ... 472s 48 settings made for mass 472s Setting atom values ... 472s 352 settings made for shape 472s Setting atom values ... 472s 48 settings made for shape 472s Setting atom values ... 472s 400 settings made for quat/random 472s 352 atoms in group spheroid 472s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 472s Neighbor list info ... 472s update: every = 1 steps, delay = 0 steps, check = yes 472s max neighbors/atom: 2000, page size: 100000 472s master list distance cutoff = 4.8 472s ghost atom cutoff = 4.8 472s binsize = 2.4, bins = 59 59 3 472s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 472s (1) pair resquared, perpetual 472s attributes: half, newton on 472s pair build: half/bin/atomonly/newton 472s stencil: half/bin/2d 472s bin: standard 472s Setting up Verlet run ... 472s Unit style : lj 472s Current step : 0 472s Time step : 0.002 472s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 472s Step c_rot E_pair TotEng Press Volume 472s 0 2.2638298 0 2.394 0.04788 20000 472s 100 1.7507088 0 1.8513745 0.036020794 20558.953 472s 200 2.2704785 0 2.401031 0.046552815 20630.598 472s 300 1.862122 0 1.969194 0.042610426 18485.56 472s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 473s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 473s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 473s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 473s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 473s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 474s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 474s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 475s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 475s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 475s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 476s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 476s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 476s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 477s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 477s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 477s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 477s Loop time of 5.08479 on 2 procs for 2000 steps with 400 atoms 477s 477s Performance: 67967.383 tau/day, 393.330 timesteps/s, 157.332 katom-step/s 477s 34.4% CPU use with 2 MPI tasks x 1 OpenMP threads 477s 477s MPI task timing breakdown: 477s Section | min time | avg time | max time |%varavg| %total 477s --------------------------------------------------------------- 477s Pair | 1.534 | 1.7738 | 2.0136 | 18.0 | 34.88 477s Neigh | 0.017584 | 0.020273 | 0.022961 | 1.9 | 0.40 477s Comm | 1.4857 | 1.7166 | 1.9475 | 17.6 | 33.76 477s Output | 0.063733 | 0.063741 | 0.063749 | 0.0 | 1.25 477s Modify | 0.65373 | 0.95151 | 1.2493 | 30.5 | 18.71 477s Other | | 0.5589 | | | 10.99 477s 477s Nlocal: 200 ave 206 max 194 min 477s Histogram: 1 0 0 0 0 0 0 0 0 1 477s Nghost: 166 ave 172 max 160 min 477s Histogram: 1 0 0 0 0 0 0 0 0 1 477s Neighs: 990.5 ave 1028 max 953 min 477s Histogram: 1 0 0 0 0 0 0 0 0 1 477s 477s Total # of neighbors = 1981 477s Ave neighs/atom = 4.9525 477s Neighbor list builds = 410 477s Dangerous builds = 0 477s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 477s Setting up Verlet run ... 477s Unit style : lj 477s Current step : 2000 477s Time step : 0.002 477s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 477s Step c_rot E_pair TotEng Press Volume 477s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 478s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 478s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 479s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 479s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 480s 2500 2.1396456 0.25118294 2.3450649 1.7231479 1625.5704 480s 2600 2.1724989 0.21652796 2.36624 1.5785682 1625.5704 481s 2700 2.1347133 0.2565462 2.3819962 1.7939756 1625.5704 481s 2800 2.2187273 0.16767707 2.3890091 1.3803388 1625.5704 481s 2900 2.2653117 0.11841424 2.358481 1.1423479 1625.5704 481s 3000 2.1965681 0.19125616 2.3687823 1.55014 1625.5704 482s 3100 2.1970501 0.19052613 2.3694703 1.4706426 1625.5704 482s 3200 2.1661439 0.22324214 2.3939177 1.619691 1625.5704 482s 3300 2.1298288 0.26157991 2.3997036 1.8700501 1625.5704 483s 3400 2.1293647 0.26220526 2.373699 1.7332686 1625.5704 483s 3500 2.1835494 0.20483304 2.4031724 1.5471088 1625.5704 483s 3600 2.1875445 0.20049079 2.4159533 1.5995253 1625.5704 484s 3700 2.1186666 0.27351639 2.4141913 1.9057949 1625.5704 484s 3800 2.1752149 0.2136072 2.3067948 1.5705518 1625.5704 484s 3900 2.1976482 0.18993383 2.4017837 1.4844827 1625.5704 484s 4000 2.1788977 0.20960933 2.3437572 1.576965 1625.5704 484s Loop time of 6.33868 on 2 procs for 2000 steps with 400 atoms 484s 484s Performance: 54522.354 tau/day, 315.523 timesteps/s, 126.209 katom-step/s 484s 41.7% CPU use with 2 MPI tasks x 1 OpenMP threads 484s 484s MPI task timing breakdown: 484s Section | min time | avg time | max time |%varavg| %total 484s --------------------------------------------------------------- 484s Pair | 2.9984 | 3.081 | 3.1635 | 4.7 | 48.61 484s Neigh | 0.0033493 | 0.0061304 | 0.0089115 | 3.6 | 0.10 484s Comm | 2.8817 | 2.9726 | 3.0636 | 5.3 | 46.90 484s Output | 0.055862 | 0.055971 | 0.05608 | 0.0 | 0.88 484s Modify | 0.11776 | 0.119 | 0.12024 | 0.4 | 1.88 484s Other | | 0.104 | | | 1.64 484s 484s Nlocal: 200 ave 207 max 193 min 484s Histogram: 1 0 0 0 0 0 0 0 0 1 484s Nghost: 162.5 ave 165 max 160 min 484s Histogram: 1 0 0 0 0 0 0 0 0 1 484s Neighs: 966 ave 1009 max 923 min 484s Histogram: 1 0 0 0 0 0 0 0 0 1 484s 484s Total # of neighbors = 1932 484s Ave neighs/atom = 4.83 484s Neighbor list builds = 50 484s Dangerous builds = 0 484s Total wall time: 0:00:11 484s LAMMPS (7 Feb 2024 - Update 1) 486s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 486s using 1 OpenMP thread(s) per MPI task 486s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 486s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 486s 1 by 1 by 1 MPI processor grid 486s Created 400 atoms 486s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 486s create_atoms CPU = 0.000 seconds 486s Setting atom values ... 486s 48 settings made for type/fraction 486s Setting atom values ... 486s 352 settings made for mass 486s Setting atom values ... 486s 48 settings made for mass 486s Setting atom values ... 486s 352 settings made for shape 486s Setting atom values ... 486s 48 settings made for shape 486s Setting atom values ... 486s 400 settings made for quat/random 486s 352 atoms in group spheroid 486s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 486s Neighbor list info ... 486s update: every = 1 steps, delay = 0 steps, check = yes 486s max neighbors/atom: 2000, page size: 100000 486s master list distance cutoff = 4.8 486s ghost atom cutoff = 4.8 486s binsize = 2.4, bins = 59 59 3 486s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 486s (1) pair resquared, perpetual 486s attributes: half, newton on 486s pair build: half/bin/atomonly/newton 486s stencil: half/bin/2d 486s bin: standard 486s Setting up Verlet run ... 486s Unit style : lj 486s Current step : 0 486s Time step : 0.002 486s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 486s Step c_rot E_pair TotEng Press Volume 486s 0 2.2638298 0 2.394 0.04788 20000 486s 100 1.7507088 0 1.8513745 0.036020794 20558.953 486s 200 2.2704785 0 2.401031 0.046552815 20630.598 486s 300 1.862122 0 1.969194 0.042610426 18485.56 486s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 486s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 486s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 486s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 486s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 486s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 486s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 486s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 486s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 486s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 486s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 486s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 486s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 486s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 486s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 486s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 486s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 486s Loop time of 2.40813 on 1 procs for 2000 steps with 400 atoms 486s 486s Performance: 143514.108 tau/day, 830.521 timesteps/s, 332.209 katom-step/s 486s 66.2% CPU use with 1 MPI tasks x 1 OpenMP threads 486s 486s MPI task timing breakdown: 486s Section | min time | avg time | max time |%varavg| %total 486s --------------------------------------------------------------- 486s Pair | 2.1371 | 2.1371 | 2.1371 | 0.0 | 88.74 486s Neigh | 0.028515 | 0.028515 | 0.028515 | 0.0 | 1.18 486s Comm | 0.0079341 | 0.0079341 | 0.0079341 | 0.0 | 0.33 486s Output | 0.02187 | 0.02187 | 0.02187 | 0.0 | 0.91 486s Modify | 0.20847 | 0.20847 | 0.20847 | 0.0 | 8.66 490s Other | | 0.004251 | | | 0.18 490s 490s Nlocal: 400 ave 400 max 400 min 490s Histogram: 1 0 0 0 0 0 0 0 0 0 490s Nghost: 214 ave 214 max 214 min 490s Histogram: 1 0 0 0 0 0 0 0 0 0 490s Neighs: 1981 ave 1981 max 1981 min 490s Histogram: 1 0 0 0 0 0 0 0 0 0 490s 490s Total # of neighbors = 1981 490s Ave neighs/atom = 4.9525 490s Neighbor list builds = 410 490s Dangerous builds = 0 490s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 490s Setting up Verlet run ... 490s Unit style : lj 490s Current step : 2000 490s Time step : 0.002 490s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 490s Step c_rot E_pair TotEng Press Volume 490s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 490s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 490s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 490s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 490s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 490s 2500 2.1396456 0.25118295 2.3450649 1.7231479 1625.5704 490s 2600 2.1724989 0.21652796 2.3662399 1.5785682 1625.5704 490s 2700 2.1347133 0.25654622 2.3819962 1.7939757 1625.5704 490s 2800 2.2187273 0.16767709 2.3890091 1.3803389 1625.5704 490s 2900 2.2653117 0.1184142 2.3584809 1.1423477 1625.5704 490s 3000 2.1965682 0.19125607 2.3687823 1.5501394 1625.5704 490s 3100 2.1970503 0.19052592 2.3694702 1.4706415 1625.5704 490s 3200 2.1661438 0.22324217 2.393918 1.619691 1625.5704 490s 3300 2.1298268 0.26158212 2.3997056 1.8700704 1625.5704 490s 3400 2.129366 0.26220387 2.3736989 1.7332623 1625.5704 490s 3500 2.1835467 0.20483593 2.4031735 1.5471227 1625.5704 490s 3600 2.187532 0.20050401 2.4159602 1.5996363 1625.5704 490s 3700 2.1186808 0.2735013 2.4141937 1.9057216 1625.5704 490s 3800 2.1752481 0.21357202 2.3067618 1.5703983 1625.5704 490s 3900 2.1976728 0.18990792 2.4017814 1.4843601 1625.5704 490s 4000 2.1786303 0.20989248 2.3438733 1.578595 1625.5704 490s Loop time of 3.55923 on 1 procs for 2000 steps with 400 atoms 490s 490s Performance: 97099.539 tau/day, 561.919 timesteps/s, 224.767 katom-step/s 490s 79.6% CPU use with 1 MPI tasks x 1 OpenMP threads 490s 490s MPI task timing breakdown: 490s Section | min time | avg time | max time |%varavg| %total 490s --------------------------------------------------------------- 490s Pair | 3.3742 | 3.3742 | 3.3742 | 0.0 | 94.80 490s Neigh | 0.0055381 | 0.0055381 | 0.0055381 | 0.0 | 0.16 490s Comm | 0.009723 | 0.009723 | 0.009723 | 0.0 | 0.27 490s Output | 0.021917 | 0.021917 | 0.021917 | 0.0 | 0.62 490s Modify | 0.14419 | 0.14419 | 0.14419 | 0.0 | 4.05 490s Other | | 0.00365 | | | 0.10 490s 490s Nlocal: 400 ave 400 max 400 min 490s Histogram: 1 0 0 0 0 0 0 0 0 0 490s Nghost: 208 ave 208 max 208 min 490s Histogram: 1 0 0 0 0 0 0 0 0 0 490s Neighs: 1932 ave 1932 max 1932 min 490s Histogram: 1 0 0 0 0 0 0 0 0 0 490s 490s Total # of neighbors = 1932 490s Ave neighs/atom = 4.83 490s Neighbor list builds = 50 490s Dangerous builds = 0 490s Total wall time: 0:00:05 490s run: OK 490s autopkgtest [02:41:39]: test ellipse: -----------------------] 491s autopkgtest [02:41:40]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 491s ellipse PASS 491s autopkgtest [02:41:40]: test flow: preparing testbed 491s Reading package lists... 491s Building dependency tree... 491s Reading state information... 492s Starting pkgProblemResolver with broken count: 0 492s Starting 2 pkgProblemResolver with broken count: 0 492s Done 492s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 492s autopkgtest [02:41:41]: test flow: [----------------------- 493s LAMMPS (7 Feb 2024 - Update 1) 493s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 493s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 493s using 1 OpenMP thread(s) per MPI task 493s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 493s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 493s 2 by 1 by 1 MPI processor grid 493s Created 420 atoms 493s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 493s create_atoms CPU = 0.000 seconds 493s 60 atoms in group lower 493s 60 atoms in group upper 493s 120 atoms in group boundary 493s 300 atoms in group flow 493s Setting atom values ... 493s 60 settings made for type 493s Setting atom values ... 493s 60 settings made for type 493s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 493s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 493s Neighbor list info ... 493s update: every = 1 steps, delay = 5 steps, check = yes 493s max neighbors/atom: 2000, page size: 100000 493s master list distance cutoff = 1.42246 493s ghost atom cutoff = 1.42246 493s binsize = 0.71123, bins = 37 32 1 493s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 493s (1) pair lj/cut, perpetual 493s attributes: half, newton on 493s pair build: half/bin/atomonly/newton 493s stencil: half/bin/2d 493s bin: standard 493s Setting up Verlet run ... 493s Unit style : lj 493s Current step : 0 493s Time step : 0.003 493s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 493s Step Temp E_pair E_mol TotEng Press Volume 493s 0 1 0 0 0.71190476 0.52314537 571.54286 493s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 493s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 493s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 493s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 493s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 493s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 493s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 493s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 493s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 493s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 493s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 493s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 493s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 493s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 493s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 493s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 493s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 493s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 493s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 493s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 493s Loop time of 0.22612 on 2 procs for 10000 steps with 420 atoms 493s 493s Performance: 11462923.227 tau/day, 44224.241 timesteps/s, 18.574 Matom-step/s 493s 82.2% CPU use with 2 MPI tasks x 1 OpenMP threads 493s 493s MPI task timing breakdown: 493s Section | min time | avg time | max time |%varavg| %total 493s --------------------------------------------------------------- 493s Pair | 0.048257 | 0.085743 | 0.12323 | 12.8 | 37.92 493s Neigh | 0.027335 | 0.027633 | 0.027931 | 0.2 | 12.22 493s Comm | 0.034998 | 0.072969 | 0.11094 | 14.1 | 32.27 493s Output | 0.00014644 | 0.00043267 | 0.00071891 | 0.0 | 0.19 493s Modify | 0.027791 | 0.028045 | 0.028299 | 0.2 | 12.40 493s Other | | 0.0113 | | | 5.00 493s 493s Nlocal: 210 ave 214 max 206 min 493s Histogram: 1 0 0 0 0 0 0 0 0 1 493s Nghost: 51 ave 52 max 50 min 493s Histogram: 1 0 0 0 0 0 0 0 0 1 493s Neighs: 472 ave 494 max 450 min 493s Histogram: 1 0 0 0 0 0 0 0 0 1 493s 493s Total # of neighbors = 944 493s Ave neighs/atom = 2.247619 493s Neighbor list builds = 994 493s Dangerous builds = 0 493s Total wall time: 0:00:00 493s LAMMPS (7 Feb 2024 - Update 1) 493s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 493s using 1 OpenMP thread(s) per MPI task 493s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 493s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 493s 1 by 1 by 1 MPI processor grid 493s Created 420 atoms 493s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 493s create_atoms CPU = 0.000 seconds 493s 60 atoms in group lower 493s 60 atoms in group upper 493s 120 atoms in group boundary 493s 300 atoms in group flow 493s Setting atom values ... 493s 60 settings made for type 493s Setting atom values ... 493s 60 settings made for type 493s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 493s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 493s Neighbor list info ... 493s update: every = 1 steps, delay = 5 steps, check = yes 493s max neighbors/atom: 2000, page size: 100000 493s master list distance cutoff = 1.42246 493s ghost atom cutoff = 1.42246 493s binsize = 0.71123, bins = 37 32 1 493s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 493s (1) pair lj/cut, perpetual 493s attributes: half, newton on 493s pair build: half/bin/atomonly/newton 493s stencil: half/bin/2d 493s bin: standard 493s Setting up Verlet run ... 493s Unit style : lj 493s Current step : 0 493s Time step : 0.003 493s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 493s Step Temp E_pair E_mol TotEng Press Volume 493s 0 1 0 0 0.71190476 0.52314537 571.54286 493s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 493s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 493s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 493s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 493s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 493s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 493s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 493s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 493s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 493s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 493s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 493s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 493s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 493s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 493s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 493s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 493s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 493s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 493s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 493s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 493s Loop time of 0.22157 on 1 procs for 10000 steps with 420 atoms 493s 493s Performance: 11698313.493 tau/day, 45132.382 timesteps/s, 18.956 Matom-step/s 493s 97.8% CPU use with 1 MPI tasks x 1 OpenMP threads 493s 493s MPI task timing breakdown: 493s Section | min time | avg time | max time |%varavg| %total 493s --------------------------------------------------------------- 493s Pair | 0.09875 | 0.09875 | 0.09875 | 0.0 | 44.57 493s Neigh | 0.052041 | 0.052041 | 0.052041 | 0.0 | 23.49 493s Comm | 0.0052555 | 0.0052555 | 0.0052555 | 0.0 | 2.37 493s Output | 0.00014004 | 0.00014004 | 0.00014004 | 0.0 | 0.06 493s Modify | 0.053027 | 0.053027 | 0.053027 | 0.0 | 23.93 493s Other | | 0.01236 | | | 5.58 493s 493s Nlocal: 420 ave 420 max 420 min 493s Histogram: 1 0 0 0 0 0 0 0 0 0 493s Nghost: 50 ave 50 max 50 min 493s Histogram: 1 0 0 0 0 0 0 0 0 0 493s Neighs: 946 ave 946 max 946 min 493s Histogram: 1 0 0 0 0 0 0 0 0 0 493s 493s Total # of neighbors = 946 493s Ave neighs/atom = 2.252381 493s Neighbor list builds = 979 493s Dangerous builds = 0 493s Total wall time: 0:00:00 493s LAMMPS (7 Feb 2024 - Update 1) 493s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 493s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 493s using 1 OpenMP thread(s) per MPI task 493s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 493s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 493s 2 by 1 by 1 MPI processor grid 493s Created 420 atoms 493s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 493s create_atoms CPU = 0.000 seconds 493s 60 atoms in group lower 493s 60 atoms in group upper 493s 120 atoms in group boundary 493s 300 atoms in group flow 493s Setting atom values ... 493s 60 settings made for type 493s Setting atom values ... 493s 60 settings made for type 493s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 493s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 493s Neighbor list info ... 493s update: every = 1 steps, delay = 5 steps, check = yes 493s max neighbors/atom: 2000, page size: 100000 493s master list distance cutoff = 1.42246 493s ghost atom cutoff = 1.42246 493s binsize = 0.71123, bins = 37 32 1 493s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 493s (1) pair lj/cut, perpetual 493s attributes: half, newton on 493s pair build: half/bin/atomonly/newton 493s stencil: half/bin/2d 493s bin: standard 493s Setting up Verlet run ... 493s Unit style : lj 493s Current step : 0 493s Time step : 0.003 493s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 493s Step Temp E_pair E_mol TotEng Press Volume 493s 0 1 0 0 0.71190476 0.52314537 571.54286 493s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 493s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 493s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 493s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 493s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 493s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 493s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 493s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 493s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 493s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 493s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 493s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 493s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 493s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 493s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 493s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 493s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 493s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 493s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 493s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 493s Loop time of 0.176488 on 2 procs for 10000 steps with 420 atoms 493s 493s Performance: 14686541.856 tau/day, 56661.041 timesteps/s, 23.798 Matom-step/s 493s 97.9% CPU use with 2 MPI tasks x 1 OpenMP threads 493s 493s MPI task timing breakdown: 493s Section | min time | avg time | max time |%varavg| %total 493s --------------------------------------------------------------- 493s Pair | 0.053998 | 0.054833 | 0.055668 | 0.4 | 31.07 493s Neigh | 0.016015 | 0.01622 | 0.016425 | 0.2 | 9.19 493s Comm | 0.036297 | 0.037384 | 0.038472 | 0.6 | 21.18 493s Output | 0.00014845 | 0.00035852 | 0.00056858 | 0.0 | 0.20 493s Modify | 0.055977 | 0.056197 | 0.056417 | 0.1 | 31.84 493s Other | | 0.0115 | | | 6.51 493s 493s Nlocal: 210 ave 211 max 209 min 493s Histogram: 1 0 0 0 0 0 0 0 0 1 493s Nghost: 50 ave 51 max 49 min 493s Histogram: 1 0 0 0 0 0 0 0 0 1 493s Neighs: 563.5 ave 569 max 558 min 493s Histogram: 1 0 0 0 0 0 0 0 0 1 493s 493s Total # of neighbors = 1127 493s Ave neighs/atom = 2.6833333 493s Neighbor list builds = 560 493s Dangerous builds = 0 493s Total wall time: 0:00:00 493s LAMMPS (7 Feb 2024 - Update 1) 494s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 494s using 1 OpenMP thread(s) per MPI task 494s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 494s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 494s 1 by 1 by 1 MPI processor grid 494s Created 420 atoms 494s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 494s create_atoms CPU = 0.000 seconds 494s 60 atoms in group lower 494s 60 atoms in group upper 494s 120 atoms in group boundary 494s 300 atoms in group flow 494s Setting atom values ... 494s 60 settings made for type 494s Setting atom values ... 494s 60 settings made for type 494s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 494s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 494s Neighbor list info ... 494s update: every = 1 steps, delay = 5 steps, check = yes 494s max neighbors/atom: 2000, page size: 100000 494s master list distance cutoff = 1.42246 494s ghost atom cutoff = 1.42246 494s binsize = 0.71123, bins = 37 32 1 494s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 494s (1) pair lj/cut, perpetual 494s attributes: half, newton on 494s pair build: half/bin/atomonly/newton 494s stencil: half/bin/2d 494s bin: standard 494s Setting up Verlet run ... 494s Unit style : lj 494s Current step : 0 494s Time step : 0.003 494s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 494s Step Temp E_pair E_mol TotEng Press Volume 494s 0 1 0 0 0.71190476 0.52314537 571.54286 494s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 494s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 494s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 494s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 494s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 494s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 494s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 494s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 494s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 494s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 494s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 494s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 494s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 494s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 494s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 494s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 494s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 494s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 494s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 494s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 494s Loop time of 0.386158 on 1 procs for 10000 steps with 420 atoms 494s 494s Performance: 6712271.684 tau/day, 25896.110 timesteps/s, 10.876 Matom-step/s 494s 64.9% CPU use with 1 MPI tasks x 1 OpenMP threads 494s 494s MPI task timing breakdown: 494s Section | min time | avg time | max time |%varavg| %total 494s --------------------------------------------------------------- 494s Pair | 0.16828 | 0.16828 | 0.16828 | 0.0 | 43.58 494s Neigh | 0.035909 | 0.035909 | 0.035909 | 0.0 | 9.30 494s Comm | 0.0050621 | 0.0050621 | 0.0050621 | 0.0 | 1.31 494s Output | 0.00014939 | 0.00014939 | 0.00014939 | 0.0 | 0.04 494s Modify | 0.16097 | 0.16097 | 0.16097 | 0.0 | 41.68 494s Other | | 0.01579 | | | 4.09 494s 494s Nlocal: 420 ave 420 max 420 min 494s Histogram: 1 0 0 0 0 0 0 0 0 0 494s Nghost: 51 ave 51 max 51 min 494s Histogram: 1 0 0 0 0 0 0 0 0 0 494s Neighs: 1150 ave 1150 max 1150 min 494s Histogram: 1 0 0 0 0 0 0 0 0 0 494s 494s Total # of neighbors = 1150 494s Ave neighs/atom = 2.7380952 494s Neighbor list builds = 563 494s Dangerous builds = 0 494s Total wall time: 0:00:00 494s run: OK 494s autopkgtest [02:41:43]: test flow: -----------------------] 495s flow PASS 495s autopkgtest [02:41:44]: test flow: - - - - - - - - - - results - - - - - - - - - - 496s autopkgtest [02:41:45]: test friction: preparing testbed 496s Reading package lists... 497s Building dependency tree... 497s Reading state information... 498s Starting pkgProblemResolver with broken count: 0 498s Starting 2 pkgProblemResolver with broken count: 0 498s Done 499s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 500s autopkgtest [02:41:49]: test friction: [----------------------- 500s LAMMPS (7 Feb 2024 - Update 1) 500s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 500s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 500s using 1 OpenMP thread(s) per MPI task 500s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 500s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 500s 2 by 1 by 1 MPI processor grid 500s Created 750 atoms 500s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 500s create_atoms CPU = 0.000 seconds 500s Created 750 atoms 500s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 500s create_atoms CPU = 0.000 seconds 500s Created 112 atoms 500s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 500s create_atoms CPU = 0.000 seconds 500s Created 112 atoms 500s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 500s create_atoms CPU = 0.000 seconds 500s 750 atoms in group lo 500s 862 atoms in group lo 500s 750 atoms in group hi 500s 862 atoms in group hi 500s 150 atoms in group lo-fixed 500s 150 atoms in group hi-fixed 500s 300 atoms in group boundary 500s 1424 atoms in group mobile 500s Setting atom values ... 500s 150 settings made for type 500s Setting atom values ... 500s 150 settings made for type 500s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 500s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 500s Neighbor list info ... 500s update: every = 1 steps, delay = 5 steps, check = yes 500s max neighbors/atom: 2000, page size: 100000 500s master list distance cutoff = 2.8 500s ghost atom cutoff = 2.8 500s binsize = 1.4, bins = 41 31 1 500s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 500s (1) pair lj/cut, perpetual 500s attributes: half, newton on 500s pair build: half/bin/atomonly/newton 500s stencil: half/bin/2d 500s bin: standard 500s Setting up Verlet run ... 500s Unit style : lj 500s Current step : 0 500s Time step : 0.0025 500s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 500s Step Temp E_pair E_mol TotEng Press Volume 500s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 505s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 510s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 512s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 513s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 513s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 514s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 514s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 515s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 515s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 515s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 516s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 516s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 516s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 517s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 519s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 519s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 519s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 519s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 520s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 521s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 521s Loop time of 20.4207 on 2 procs for 20000 steps with 1724 atoms 521s 521s Performance: 211550.494 tau/day, 979.400 timesteps/s, 1.688 Matom-step/s 521s 30.6% CPU use with 2 MPI tasks x 1 OpenMP threads 521s 521s MPI task timing breakdown: 521s Section | min time | avg time | max time |%varavg| %total 521s --------------------------------------------------------------- 521s Pair | 4.0141 | 4.5403 | 5.0665 | 24.7 | 22.23 521s Neigh | 0.27956 | 0.31139 | 0.34322 | 5.7 | 1.52 521s Comm | 13.619 | 14.053 | 14.488 | 11.6 | 68.82 521s Output | 0.00061075 | 0.00186 | 0.0031093 | 2.9 | 0.01 521s Modify | 0.41477 | 0.42044 | 0.42611 | 0.9 | 2.06 521s Other | | 1.093 | | | 5.35 521s 521s Nlocal: 862 ave 874 max 850 min 521s Histogram: 1 0 0 0 0 0 0 0 0 1 521s Nghost: 165.5 ave 166 max 165 min 521s Histogram: 1 0 0 0 0 0 0 0 0 1 521s Neighs: 7198 ave 7283 max 7113 min 521s Histogram: 1 0 0 0 0 0 0 0 0 1 521s 521s Total # of neighbors = 14396 521s Ave neighs/atom = 8.350348 521s Neighbor list builds = 720 521s Dangerous builds = 0 521s Total wall time: 0:00:20 521s LAMMPS (7 Feb 2024 - Update 1) 529s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 529s using 1 OpenMP thread(s) per MPI task 529s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 529s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 529s 1 by 1 by 1 MPI processor grid 529s Created 750 atoms 529s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 529s create_atoms CPU = 0.000 seconds 529s Created 750 atoms 529s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 529s create_atoms CPU = 0.000 seconds 529s Created 112 atoms 529s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 529s create_atoms CPU = 0.000 seconds 529s Created 112 atoms 529s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 529s create_atoms CPU = 0.000 seconds 529s 750 atoms in group lo 529s 862 atoms in group lo 529s 750 atoms in group hi 529s 862 atoms in group hi 529s 150 atoms in group lo-fixed 529s 150 atoms in group hi-fixed 529s 300 atoms in group boundary 529s 1424 atoms in group mobile 529s Setting atom values ... 529s 150 settings made for type 529s Setting atom values ... 529s 150 settings made for type 529s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 529s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 529s Neighbor list info ... 529s update: every = 1 steps, delay = 5 steps, check = yes 529s max neighbors/atom: 2000, page size: 100000 529s master list distance cutoff = 2.8 529s ghost atom cutoff = 2.8 529s binsize = 1.4, bins = 41 31 1 529s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 529s (1) pair lj/cut, perpetual 529s attributes: half, newton on 529s pair build: half/bin/atomonly/newton 529s stencil: half/bin/2d 529s bin: standard 529s Setting up Verlet run ... 529s Unit style : lj 529s Current step : 0 529s Time step : 0.0025 529s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 529s Step Temp E_pair E_mol TotEng Press Volume 529s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 529s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 529s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 529s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 529s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 529s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 529s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 529s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 529s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 529s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 529s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 529s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 529s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 529s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 529s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 529s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 529s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 529s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 529s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 530s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 530s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 530s Loop time of 8.81117 on 1 procs for 20000 steps with 1724 atoms 530s 530s Performance: 490287.019 tau/day, 2269.847 timesteps/s, 3.913 Matom-step/s 530s 56.9% CPU use with 1 MPI tasks x 1 OpenMP threads 530s 530s MPI task timing breakdown: 530s Section | min time | avg time | max time |%varavg| %total 530s --------------------------------------------------------------- 530s Pair | 7.0498 | 7.0498 | 7.0498 | 0.0 | 80.01 530s Neigh | 0.35363 | 0.35363 | 0.35363 | 0.0 | 4.01 530s Comm | 0.027547 | 0.027547 | 0.027547 | 0.0 | 0.31 530s Output | 0.0005976 | 0.0005976 | 0.0005976 | 0.0 | 0.01 530s Modify | 1.0283 | 1.0283 | 1.0283 | 0.0 | 11.67 530s Other | | 0.3513 | | | 3.99 530s 530s Nlocal: 1724 ave 1724 max 1724 min 530s Histogram: 1 0 0 0 0 0 0 0 0 0 530s Nghost: 145 ave 145 max 145 min 530s Histogram: 1 0 0 0 0 0 0 0 0 0 530s Neighs: 14397 ave 14397 max 14397 min 530s Histogram: 1 0 0 0 0 0 0 0 0 0 530s 530s Total # of neighbors = 14397 530s Ave neighs/atom = 8.3509281 530s Neighbor list builds = 723 530s Dangerous builds = 0 530s Total wall time: 0:00:08 530s run: OK 530s autopkgtest [02:42:19]: test friction: -----------------------] 530s friction PASS 530s autopkgtest [02:42:19]: test friction: - - - - - - - - - - results - - - - - - - - - - 531s autopkgtest [02:42:20]: test hugo: preparing testbed 532s Reading package lists... 532s Building dependency tree... 532s Reading state information... 532s Starting pkgProblemResolver with broken count: 0 532s Starting 2 pkgProblemResolver with broken count: 0 532s Done 532s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 533s autopkgtest [02:42:22]: test hugo: [----------------------- 533s LAMMPS (7 Feb 2024 - Update 1) 533s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 533s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 533s using 1 OpenMP thread(s) per MPI task 533s Lattice spacing in x,y,z = 1.4142135 2 2 533s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 533s 1 by 1 by 2 MPI processor grid 533s Created 1000 atoms 533s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 533s create_atoms CPU = 0.000 seconds 533s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 533s Neighbor list info ... 533s update: every = 1 steps, delay = 0 steps, check = yes 533s max neighbors/atom: 2000, page size: 100000 533s master list distance cutoff = 1.8475372 533s ghost atom cutoff = 1.8475372 533s binsize = 0.92376862, bins = 8 11 11 533s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 533s (1) pair lj/cubic, perpetual 533s attributes: half, newton on 533s pair build: half/bin/atomonly/newton 533s stencil: half/bin/3d 533s bin: standard 533s Setting up cg style minimization ... 533s Unit style : lj 533s Current step : 0 533s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 533s (src/min.cpp:219) 533s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 533s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 533s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 533s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 533s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 533s Loop time of 0.105896 on 2 procs for 134 steps with 1000 atoms 533s 533s 58.9% CPU use with 2 MPI tasks x 1 OpenMP threads 533s 533s Minimization stats: 533s Stopping criterion = force tolerance 533s Energy initial, next-to-last, final = 533s -6.29375358358574 -6.33442531515467 -6.33442531515467 533s Force two-norm initial, final = 3395.2895 5.526433e-10 533s Force max component initial, final = 1960.2713 3.2059964e-10 533s Final line search alpha, max atom move = 1 3.2059964e-10 533s Iterations, force evaluations = 134 137 533s 533s MPI task timing breakdown: 533s Section | min time | avg time | max time |%varavg| %total 533s --------------------------------------------------------------- 533s Pair | 0.028281 | 0.061952 | 0.095624 | 13.5 | 58.50 533s Neigh | 0.00057033 | 0.00070672 | 0.0008431 | 0.0 | 0.67 533s Comm | 0.0024955 | 0.036269 | 0.070042 | 17.7 | 34.25 533s Output | 1.5784e-05 | 2.756e-05 | 3.9336e-05 | 0.0 | 0.03 533s Modify | 0 | 0 | 0 | 0.0 | 0.00 533s Other | | 0.006941 | | | 6.55 533s 533s Nlocal: 500 ave 550 max 450 min 533s Histogram: 1 0 0 0 0 0 0 0 0 1 533s Nghost: 1214 ave 1264 max 1164 min 533s Histogram: 1 0 0 0 0 0 0 0 0 1 533s Neighs: 10500 ave 11550 max 9450 min 533s Histogram: 1 0 0 0 0 0 0 0 0 1 533s 533s Total # of neighbors = 21000 533s Ave neighs/atom = 21 533s Neighbor list builds = 1 533s Dangerous builds = 0 533s System init for write_restart ... 533s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 533s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 533s using 1 OpenMP thread(s) per MPI task 533s Reading restart file ... 533s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 533s restoring atom style atomic from restart 533s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 533s 1 by 1 by 2 MPI processor grid 533s restoring pair style lj/cubic from restart 533s 1000 atoms 533s read_restart CPU = 0.001 seconds 533s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 533s Neighbor list info ... 533s update: every = 1 steps, delay = 0 steps, check = yes 533s max neighbors/atom: 2000, page size: 100000 533s master list distance cutoff = 1.7475372 533s ghost atom cutoff = 1.7475372 533s binsize = 0.87376862, bins = 8 12 12 533s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 533s (1) pair lj/cubic, perpetual 533s attributes: half, newton on 533s pair build: half/bin/atomonly/newton 533s stencil: half/bin/3d 533s bin: standard 533s Setting up Verlet run ... 533s Unit style : lj 533s Current step : 0 533s Time step : 0.001 533s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 533s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 533s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 534s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 544s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 553s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 556s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 559s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 560s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 560s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 562s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 564s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 565s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 565s Loop time of 31.3367 on 2 procs for 10000 steps with 1000 atoms 565s 565s Performance: 27571.481 tau/day, 319.114 timesteps/s, 319.114 katom-step/s 565s 29.0% CPU use with 2 MPI tasks x 1 OpenMP threads 565s 565s MPI task timing breakdown: 565s Section | min time | avg time | max time |%varavg| %total 565s --------------------------------------------------------------- 565s Pair | 7.0483 | 7.4096 | 7.771 | 13.3 | 23.65 565s Neigh | 0.21602 | 0.29743 | 0.37883 | 14.9 | 0.95 565s Comm | 18.149 | 18.495 | 18.842 | 8.1 | 59.02 565s Output | 0.00043147 | 0.0015445 | 0.0026575 | 2.8 | 0.00 565s Modify | 4.6454 | 4.6902 | 4.735 | 2.1 | 14.97 565s Other | | 0.4426 | | | 1.41 565s 565s Nlocal: 500 ave 509 max 491 min 565s Histogram: 1 0 0 0 0 0 0 0 0 1 565s Nghost: 1346.5 ave 1369 max 1324 min 565s Histogram: 1 0 0 0 0 0 0 0 0 1 565s Neighs: 10311.5 ave 10391 max 10232 min 565s Histogram: 1 0 0 0 0 0 0 0 0 1 565s 565s Total # of neighbors = 20623 565s Ave neighs/atom = 20.623 565s Neighbor list builds = 205 565s Dangerous builds = 0 565s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 565s using 1 OpenMP thread(s) per MPI task 565s Reading restart file ... 565s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 565s restoring atom style atomic from restart 565s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 565s 1 by 1 by 2 MPI processor grid 565s restoring pair style lj/cubic from restart 565s 1000 atoms 565s read_restart CPU = 0.002 seconds 565s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 565s Neighbor list info ... 565s update: every = 1 steps, delay = 0 steps, check = yes 565s max neighbors/atom: 2000, page size: 100000 565s master list distance cutoff = 1.7475372 565s ghost atom cutoff = 1.7475372 565s binsize = 0.87376862, bins = 8 12 12 565s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 565s (1) pair lj/cubic, perpetual 565s attributes: half, newton on 565s pair build: half/bin/atomonly/newton 565s stencil: half/bin/3d 565s bin: standard 565s Setting up Verlet run ... 565s Unit style : lj 565s Current step : 0 565s Time step : 0.001 565s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 565s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 565s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 566s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 567s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 567s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 570s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 573s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 580s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 586s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 592s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 598s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 601s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 601s Loop time of 35.8136 on 2 procs for 10000 steps with 1000 atoms 601s 601s Performance: 24124.890 tau/day, 279.223 timesteps/s, 279.223 katom-step/s 601s 23.2% CPU use with 2 MPI tasks x 1 OpenMP threads 601s 601s MPI task timing breakdown: 601s Section | min time | avg time | max time |%varavg| %total 601s --------------------------------------------------------------- 601s Pair | 9.6283 | 10.253 | 10.878 | 19.5 | 28.63 601s Neigh | 0.0057525 | 0.0064628 | 0.007173 | 0.9 | 0.02 601s Comm | 19.499 | 20.297 | 21.096 | 17.7 | 56.67 601s Output | 0.00046026 | 0.045421 | 0.090381 | 21.1 | 0.13 601s Modify | 3.7844 | 4.1762 | 4.5681 | 19.2 | 11.66 601s Other | | 1.035 | | | 2.89 601s 601s Nlocal: 500 ave 508 max 492 min 601s Histogram: 1 0 0 0 0 0 0 0 0 1 601s Nghost: 1214 ave 1222 max 1206 min 601s Histogram: 1 0 0 0 0 0 0 0 0 1 601s Neighs: 10500 ave 10668 max 10332 min 601s Histogram: 1 0 0 0 0 0 0 0 0 1 601s 601s Total # of neighbors = 21000 601s Ave neighs/atom = 21 601s Neighbor list builds = 10 601s Dangerous builds = 0 601s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 601s using 1 OpenMP thread(s) per MPI task 601s Reading restart file ... 601s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 601s restoring atom style atomic from restart 601s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 601s 1 by 1 by 2 MPI processor grid 601s restoring pair style lj/cubic from restart 601s 1000 atoms 601s read_restart CPU = 0.001 seconds 601s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 601s Neighbor list info ... 601s update: every = 1 steps, delay = 0 steps, check = yes 601s max neighbors/atom: 2000, page size: 100000 601s master list distance cutoff = 1.7475372 601s ghost atom cutoff = 1.7475372 601s binsize = 0.87376862, bins = 8 12 12 601s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 601s (1) pair lj/cubic, perpetual 601s attributes: half, newton on 601s pair build: half/bin/atomonly/newton 601s stencil: half/bin/3d 601s bin: standard 601s Setting up Verlet run ... 601s Unit style : lj 601s Current step : 0 601s Time step : 0.001 601s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 601s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 601s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 603s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 604s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 606s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 610s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 617s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 621s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 629s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 634s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 636s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 639s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 639s Loop time of 38.1749 on 2 procs for 10000 steps with 1000 atoms 639s 639s Performance: 22632.661 tau/day, 261.952 timesteps/s, 261.952 katom-step/s 639s 21.3% CPU use with 2 MPI tasks x 1 OpenMP threads 639s 639s MPI task timing breakdown: 639s Section | min time | avg time | max time |%varavg| %total 639s --------------------------------------------------------------- 639s Pair | 9.6443 | 10.013 | 10.382 | 11.7 | 26.23 639s Neigh | 0.18937 | 0.21968 | 0.25 | 6.5 | 0.58 639s Comm | 21.806 | 22.032 | 22.258 | 4.8 | 57.71 639s Output | 0.00053535 | 0.034212 | 0.067888 | 18.2 | 0.09 639s Modify | 4.933 | 5.0242 | 5.1155 | 4.1 | 13.16 639s Other | | 0.8518 | | | 2.23 639s 639s Nlocal: 500 ave 510 max 490 min 639s Histogram: 1 0 0 0 0 0 0 0 0 1 639s Nghost: 1216.5 ave 1227 max 1206 min 639s Histogram: 1 0 0 0 0 0 0 0 0 1 639s Neighs: 10311 ave 10520 max 10102 min 639s Histogram: 1 0 0 0 0 0 0 0 0 1 639s 639s Total # of neighbors = 20622 639s Ave neighs/atom = 20.622 639s Neighbor list builds = 95 639s Dangerous builds = 0 639s Total wall time: 0:01:45 639s LAMMPS (7 Feb 2024 - Update 1) 640s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 640s using 1 OpenMP thread(s) per MPI task 640s Lattice spacing in x,y,z = 1.4142135 2 2 640s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 640s 1 by 1 by 1 MPI processor grid 640s Created 1000 atoms 640s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 640s create_atoms CPU = 0.000 seconds 640s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 640s Neighbor list info ... 640s update: every = 1 steps, delay = 0 steps, check = yes 640s max neighbors/atom: 2000, page size: 100000 640s master list distance cutoff = 1.8475372 640s ghost atom cutoff = 1.8475372 640s binsize = 0.92376862, bins = 8 11 11 640s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 640s (1) pair lj/cubic, perpetual 640s attributes: half, newton on 640s pair build: half/bin/atomonly/newton 640s stencil: half/bin/3d 640s bin: standard 640s Setting up cg style minimization ... 640s Unit style : lj 640s Current step : 0 640s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 640s (src/min.cpp:219) 640s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 640s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 640s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 640s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 640s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 640s Loop time of 0.972893 on 1 procs for 134 steps with 1000 atoms 640s 640s 8.0% CPU use with 1 MPI tasks x 1 OpenMP threads 640s 640s Minimization stats: 640s Stopping criterion = force tolerance 640s Energy initial, next-to-last, final = 640s -6.29375358358556 -6.33442531515503 -6.33442531515503 640s Force two-norm initial, final = 3395.2895 5.6047601e-10 640s Force max component initial, final = 1960.2713 3.2666928e-10 640s Final line search alpha, max atom move = 1 3.2666928e-10 640s Iterations, force evaluations = 134 137 640s 640s MPI task timing breakdown: 640s Section | min time | avg time | max time |%varavg| %total 640s --------------------------------------------------------------- 640s Pair | 0.91626 | 0.91626 | 0.91626 | 0.0 | 94.18 640s Neigh | 0.0014354 | 0.0014354 | 0.0014354 | 0.0 | 0.15 640s Comm | 0.031515 | 0.031515 | 0.031515 | 0.0 | 3.24 640s Output | 3.4483e-05 | 3.4483e-05 | 3.4483e-05 | 0.0 | 0.00 640s Modify | 0 | 0 | 0 | 0.0 | 0.00 640s Other | | 0.02365 | | | 2.43 640s 640s Nlocal: 1000 ave 1000 max 1000 min 640s Histogram: 1 0 0 0 0 0 0 0 0 0 640s Nghost: 1724 ave 1724 max 1724 min 640s Histogram: 1 0 0 0 0 0 0 0 0 0 640s Neighs: 21000 ave 21000 max 21000 min 640s Histogram: 1 0 0 0 0 0 0 0 0 0 640s 640s Total # of neighbors = 21000 640s Ave neighs/atom = 21 640s Neighbor list builds = 1 640s Dangerous builds = 0 640s System init for write_restart ... 640s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 640s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 640s using 1 OpenMP thread(s) per MPI task 640s Reading restart file ... 640s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 640s restoring atom style atomic from restart 640s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 640s 1 by 1 by 1 MPI processor grid 640s restoring pair style lj/cubic from restart 640s 1000 atoms 640s read_restart CPU = 0.000 seconds 640s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 640s Neighbor list info ... 640s update: every = 1 steps, delay = 0 steps, check = yes 640s max neighbors/atom: 2000, page size: 100000 640s master list distance cutoff = 1.7475372 640s ghost atom cutoff = 1.7475372 640s binsize = 0.87376862, bins = 8 12 12 640s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 664s (1) pair lj/cubic, perpetual 664s attributes: half, newton on 664s pair build: half/bin/atomonly/newton 664s stencil: half/bin/3d 664s bin: standard 664s Setting up Verlet run ... 664s Unit style : lj 664s Current step : 0 664s Time step : 0.001 664s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 664s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 664s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 664s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 664s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 664s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 664s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 664s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 664s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 664s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 664s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 664s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 664s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 664s Loop time of 23.8078 on 1 procs for 10000 steps with 1000 atoms 664s 664s Performance: 36290.608 tau/day, 420.030 timesteps/s, 420.030 katom-step/s 664s 25.5% CPU use with 1 MPI tasks x 1 OpenMP threads 664s 664s MPI task timing breakdown: 664s Section | min time | avg time | max time |%varavg| %total 664s --------------------------------------------------------------- 664s Pair | 19.238 | 19.238 | 19.238 | 0.0 | 80.81 664s Neigh | 0.95439 | 0.95439 | 0.95439 | 0.0 | 4.01 664s Comm | 0.55189 | 0.55189 | 0.55189 | 0.0 | 2.32 664s Output | 0.0005152 | 0.0005152 | 0.0005152 | 0.0 | 0.00 664s Modify | 2.9033 | 2.9033 | 2.9033 | 0.0 | 12.19 664s Other | | 0.1593 | | | 0.67 664s 664s Nlocal: 1000 ave 1000 max 1000 min 664s Histogram: 1 0 0 0 0 0 0 0 0 0 664s Nghost: 1886 ave 1886 max 1886 min 664s Histogram: 1 0 0 0 0 0 0 0 0 0 664s Neighs: 20874 ave 20874 max 20874 min 664s Histogram: 1 0 0 0 0 0 0 0 0 0 664s 664s Total # of neighbors = 20874 664s Ave neighs/atom = 20.874 664s Neighbor list builds = 188 664s Dangerous builds = 0 664s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 664s using 1 OpenMP thread(s) per MPI task 664s Reading restart file ... 664s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 664s restoring atom style atomic from restart 664s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 664s 1 by 1 by 1 MPI processor grid 664s restoring pair style lj/cubic from restart 664s 1000 atoms 664s read_restart CPU = 0.000 seconds 664s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 664s Neighbor list info ... 680s update: every = 1 steps, delay = 0 steps, check = yes 680s max neighbors/atom: 2000, page size: 100000 680s master list distance cutoff = 1.7475372 680s ghost atom cutoff = 1.7475372 680s binsize = 0.87376862, bins = 8 12 12 680s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 680s (1) pair lj/cubic, perpetual 680s attributes: half, newton on 680s pair build: half/bin/atomonly/newton 680s stencil: half/bin/3d 680s bin: standard 680s Setting up Verlet run ... 680s Unit style : lj 680s Current step : 0 680s Time step : 0.001 680s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 680s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 680s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 680s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 680s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 680s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 680s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 680s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 680s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 680s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 680s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 680s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 680s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 680s Loop time of 16.1076 on 1 procs for 10000 steps with 1000 atoms 680s 680s Performance: 53639.356 tau/day, 620.826 timesteps/s, 620.826 katom-step/s 680s 32.0% CPU use with 1 MPI tasks x 1 OpenMP threads 680s 680s MPI task timing breakdown: 680s Section | min time | avg time | max time |%varavg| %total 680s --------------------------------------------------------------- 680s Pair | 14.24 | 14.24 | 14.24 | 0.0 | 88.41 680s Neigh | 0.012297 | 0.012297 | 0.012297 | 0.0 | 0.08 680s Comm | 0.26988 | 0.26988 | 0.26988 | 0.0 | 1.68 680s Output | 0.00047807 | 0.00047807 | 0.00047807 | 0.0 | 0.00 680s Modify | 1.5264 | 1.5264 | 1.5264 | 0.0 | 9.48 680s Other | | 0.05847 | | | 0.36 680s 680s Nlocal: 1000 ave 1000 max 1000 min 680s Histogram: 1 0 0 0 0 0 0 0 0 0 680s Nghost: 1724 ave 1724 max 1724 min 680s Histogram: 1 0 0 0 0 0 0 0 0 0 680s Neighs: 21000 ave 21000 max 21000 min 680s Histogram: 1 0 0 0 0 0 0 0 0 0 680s 680s Total # of neighbors = 21000 680s Ave neighs/atom = 21 680s Neighbor list builds = 11 680s Dangerous builds = 0 680s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 680s using 1 OpenMP thread(s) per MPI task 680s Reading restart file ... 680s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 680s restoring atom style atomic from restart 710s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 710s 1 by 1 by 1 MPI processor grid 710s restoring pair style lj/cubic from restart 710s 1000 atoms 710s read_restart CPU = 0.005 seconds 710s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 710s Neighbor list info ... 710s update: every = 1 steps, delay = 0 steps, check = yes 710s max neighbors/atom: 2000, page size: 100000 710s master list distance cutoff = 1.7475372 710s ghost atom cutoff = 1.7475372 710s binsize = 0.87376862, bins = 8 12 12 710s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 710s (1) pair lj/cubic, perpetual 710s attributes: half, newton on 710s pair build: half/bin/atomonly/newton 710s stencil: half/bin/3d 710s bin: standard 710s Setting up Verlet run ... 710s Unit style : lj 710s Current step : 0 710s Time step : 0.001 710s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 710s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 710s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 710s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 710s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 710s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 710s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 710s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 710s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 710s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 710s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 710s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 710s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 710s Loop time of 29.5982 on 1 procs for 10000 steps with 1000 atoms 710s 710s Performance: 29190.998 tau/day, 337.859 timesteps/s, 337.859 katom-step/s 710s 21.1% CPU use with 1 MPI tasks x 1 OpenMP threads 710s 710s MPI task timing breakdown: 710s Section | min time | avg time | max time |%varavg| %total 710s --------------------------------------------------------------- 710s Pair | 26.003 | 26.003 | 26.003 | 0.0 | 87.85 710s Neigh | 0.69706 | 0.69706 | 0.69706 | 0.0 | 2.36 710s Comm | 0.1498 | 0.1498 | 0.1498 | 0.0 | 0.51 710s Output | 0.00061648 | 0.00061648 | 0.00061648 | 0.0 | 0.00 710s Modify | 2.6919 | 2.6919 | 2.6919 | 0.0 | 9.09 710s Other | | 0.05583 | | | 0.19 710s 710s Nlocal: 1000 ave 1000 max 1000 min 710s Histogram: 1 0 0 0 0 0 0 0 0 0 710s Nghost: 1724 ave 1724 max 1724 min 710s Histogram: 1 0 0 0 0 0 0 0 0 0 710s Neighs: 20654 ave 20654 max 20654 min 710s Histogram: 1 0 0 0 0 0 0 0 0 0 710s 710s Total # of neighbors = 20654 710s Ave neighs/atom = 20.654 710s Neighbor list builds = 94 710s Dangerous builds = 0 710s Total wall time: 0:01:10 710s run: OK 710s autopkgtest [02:45:19]: test hugo: -----------------------] 710s hugo PASS 710s autopkgtest [02:45:19]: test hugo: - - - - - - - - - - results - - - - - - - - - - 711s autopkgtest [02:45:20]: test command1: preparing testbed 862s autopkgtest [02:47:51]: testbed dpkg architecture: s390x 863s autopkgtest [02:47:52]: testbed apt version: 3.0.0 864s autopkgtest [02:47:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 865s autopkgtest [02:47:54]: testbed release detected to be: questing 866s autopkgtest [02:47:55]: updating testbed package index (apt update) 866s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 866s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 866s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 867s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 867s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [190 kB] 867s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2281 kB] 867s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [57.4 kB] 867s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [216 kB] 867s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1061 kB] 868s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [15.9 kB] 870s Fetched 3931 kB in 4s (1067 kB/s) 874s Reading package lists... 874s autopkgtest [02:48:03]: upgrading testbed (apt dist-upgrade and autopurge) 875s Reading package lists... 875s Building dependency tree... 875s Reading state information... 875s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 875s Starting 2 pkgProblemResolver with broken count: 0 875s Done 876s Entering ResolveByKeep 877s 877s Calculating upgrade... 878s The following packages will be upgraded: 878s libperl5.40 libzstd1 perl perl-base perl-modules-5.40 zstd 878s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 878s Need to get 11.5 MB of archives. 878s After this operation, 32.8 kB of additional disk space will be used. 878s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libperl5.40 s390x 5.40.1-3 [4972 kB] 879s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl s390x 5.40.1-3 [262 kB] 879s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl-base s390x 5.40.1-3 [1954 kB] 879s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main s390x perl-modules-5.40 all 5.40.1-3 [3217 kB] 879s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main s390x libzstd1 s390x 1.5.7+dfsg-1 [345 kB] 879s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main s390x zstd s390x 1.5.7+dfsg-1 [722 kB] 879s Fetched 11.5 MB in 1s (8981 kB/s) 880s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 880s Preparing to unpack .../libperl5.40_5.40.1-3_s390x.deb ... 880s Unpacking libperl5.40:s390x (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 880s Preparing to unpack .../perl_5.40.1-3_s390x.deb ... 880s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 880s Preparing to unpack .../perl-base_5.40.1-3_s390x.deb ... 880s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 882s Setting up perl-base (5.40.1-3) ... 882s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 882s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 882s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 890s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_s390x.deb ... 890s Unpacking libzstd1:s390x (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 891s Setting up libzstd1:s390x (1.5.7+dfsg-1) ... 891s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 891s Preparing to unpack .../zstd_1.5.7+dfsg-1_s390x.deb ... 891s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 891s Setting up perl-modules-5.40 (5.40.1-3) ... 891s Setting up zstd (1.5.7+dfsg-1) ... 891s Setting up libperl5.40:s390x (5.40.1-3) ... 891s Setting up perl (5.40.1-3) ... 891s Processing triggers for man-db (2.13.0-1) ... 895s Processing triggers for libc-bin (2.41-6ubuntu1) ... 898s Reading package lists... 898s Building dependency tree... 898s Reading state information... 900s Starting pkgProblemResolver with broken count: 0 900s Starting 2 pkgProblemResolver with broken count: 0 900s Done 900s Solving dependencies... 901s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 904s Reading package lists... 904s Building dependency tree... 904s Reading state information... 904s Starting pkgProblemResolver with broken count: 0 904s Starting 2 pkgProblemResolver with broken count: 0 904s Done 906s The following NEW packages will be installed: 906s autoconf automake autotools-dev cpp-14 cpp-14-s390x-linux-gnu 906s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14 906s gcc-14-s390x-linux-gnu gfortran-14 gfortran-14-s390x-linux-gnu libaec0 906s libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 libdouble-conversion3 906s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 906s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 906s libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 libgcc-14-dev 906s libgfortran-14-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 906s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 906s libhdf5-hl-310 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev 906s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 906s libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev liblammps0t64 906s liblapack3 libltdl-dev libltdl7 libmpc3 libmunge2 libnetcdf22 libnl-3-dev 906s libnl-route-3-dev libnuma-dev libogg0 libopengl0 libopenmpi-dev libopenmpi40 906s libpciaccess0 libpixman-1-0 libpmix-dev libpmix2t64 libpnetcdf6 libproj25 906s librdmacm1t64 libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 906s libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libubsan1 libvoro++1 906s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 906s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 906s libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 906s libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin mpi-default-dev 906s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 906s x11-common zlib1g-dev 906s 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded. 906s Need to get 128 MB of archives. 906s After this operation, 480 MB of additional disk space will be used. 906s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x m4 s390x 1.4.19-7 [259 kB] 906s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x autoconf all 2.72-3ubuntu1 [383 kB] 906s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x autotools-dev all 20220109.1 [44.9 kB] 906s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x automake all 1:1.17-3ubuntu1 [572 kB] 906s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x libisl23 s390x 0.27-1 [704 kB] 906s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 906s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [9572 kB] 906s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x cpp-14 s390x 14.2.0-19ubuntu2 [1024 B] 906s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 906s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 906s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 906s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x libcc1-0 s390x 15-20250404-0ubuntu1 [49.6 kB] 906s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB] 906s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x libitm1 s390x 15-20250404-0ubuntu1 [31.2 kB] 906s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x libasan8 s390x 15-20250404-0ubuntu1 [2966 kB] 906s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libubsan1 s390x 15-20250404-0ubuntu1 [1210 kB] 906s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x libgcc-14-dev s390x 14.2.0-19ubuntu2 [1037 kB] 907s Get:18 http://ftpmaster.internal/ubuntu questing/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [18.7 MB] 907s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x gcc-14 s390x 14.2.0-19ubuntu2 [529 kB] 907s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB] 907s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran-14-dev s390x 14.2.0-19ubuntu2 [653 kB] 908s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-19ubuntu2 [10.3 MB] 908s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x gfortran-14 s390x 14.2.0-19ubuntu2 [14.2 kB] 908s Get:24 http://ftpmaster.internal/ubuntu questing/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 908s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 908s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 908s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 908s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 908s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 908s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 908s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 908s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB] 908s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 908s Get:34 http://ftpmaster.internal/ubuntu questing/universe s390x libdouble-conversion3 s390x 3.3.1-1 [43.3 kB] 908s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-10 [145 kB] 908s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libevent-extra-2.1-7t64 s390x 2.1.12-stable-10 [64.1 kB] 908s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10 [7870 B] 908s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libevent-openssl-2.1-7t64 s390x 2.1.12-stable-10 [14.9 kB] 908s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x libevent-dev s390x 2.1.12-stable-10 [276 kB] 908s Get:40 http://ftpmaster.internal/ubuntu questing/main s390x librdmacm1t64 s390x 56.0-4ubuntu1 [74.0 kB] 908s Get:41 http://ftpmaster.internal/ubuntu questing/universe s390x libfabric1 s390x 1.17.0-3.1 [558 kB] 908s Get:42 http://ftpmaster.internal/ubuntu questing/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build1 [511 kB] 908s Get:43 http://ftpmaster.internal/ubuntu questing/main s390x libwayland-server0 s390x 1.23.1-3 [37.3 kB] 908s Get:44 http://ftpmaster.internal/ubuntu questing/main s390x libx11-xcb1 s390x 2:1.8.10-2 [7954 B] 908s Get:45 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 908s Get:46 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 908s Get:47 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 908s Get:48 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 908s Get:49 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 908s Get:50 http://ftpmaster.internal/ubuntu questing/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 908s Get:51 http://ftpmaster.internal/ubuntu questing/main s390x mesa-libgallium s390x 25.0.3-1ubuntu2 [8057 kB] 908s Get:52 http://ftpmaster.internal/ubuntu questing/main s390x libgbm1 s390x 25.0.3-1ubuntu2 [34.5 kB] 908s Get:53 http://ftpmaster.internal/ubuntu questing/main s390x libvulkan1 s390x 1.4.304.0-1 [147 kB] 908s Get:54 http://ftpmaster.internal/ubuntu questing/main s390x libgl1-mesa-dri s390x 25.0.3-1ubuntu2 [35.5 kB] 908s Get:55 http://ftpmaster.internal/ubuntu questing/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 908s Get:56 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 908s Get:57 http://ftpmaster.internal/ubuntu questing/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 908s Get:58 http://ftpmaster.internal/ubuntu questing/main s390x libglx-mesa0 s390x 25.0.3-1ubuntu2 [161 kB] 908s Get:59 http://ftpmaster.internal/ubuntu questing/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 908s Get:60 http://ftpmaster.internal/ubuntu questing/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 908s Get:61 http://ftpmaster.internal/ubuntu questing/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 908s Get:62 http://ftpmaster.internal/ubuntu questing/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 908s Get:63 http://ftpmaster.internal/ubuntu questing/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 908s Get:64 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 908s Get:65 http://ftpmaster.internal/ubuntu questing/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 908s Get:66 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc15 s390x 2.12.0-1 [176 kB] 908s Get:67 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 908s Get:68 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 908s Get:69 http://ftpmaster.internal/ubuntu questing/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 908s Get:70 http://ftpmaster.internal/ubuntu questing/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 908s Get:71 http://ftpmaster.internal/ubuntu questing/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 908s Get:72 http://ftpmaster.internal/ubuntu questing/universe s390x libkim-api2 s390x 2.3.0-1ubuntu1 [602 kB] 908s Get:73 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 908s Get:74 http://ftpmaster.internal/ubuntu questing/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 908s Get:75 http://ftpmaster.internal/ubuntu questing/universe s390x libmunge2 s390x 0.5.16-1 [15.2 kB] 908s Get:76 http://ftpmaster.internal/ubuntu questing/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB] 908s Get:77 http://ftpmaster.internal/ubuntu questing/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 908s Get:78 http://ftpmaster.internal/ubuntu questing/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1build1 [41.1 kB] 908s Get:79 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc-plugins s390x 2.12.0-1 [16.1 kB] 909s Get:80 http://ftpmaster.internal/ubuntu questing/universe s390x libpmix2t64 s390x 5.0.6-5 [715 kB] 909s Get:81 http://ftpmaster.internal/ubuntu questing/universe s390x libopenmpi40 s390x 5.0.7-1 [2196 kB] 909s Get:82 http://ftpmaster.internal/ubuntu questing/universe s390x libpnetcdf6 s390x 1.14.0-2 [1172 kB] 909s Get:83 http://ftpmaster.internal/ubuntu questing/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 909s Get:84 http://ftpmaster.internal/ubuntu questing/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 909s Get:85 http://ftpmaster.internal/ubuntu questing/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 909s Get:86 http://ftpmaster.internal/ubuntu questing/universe s390x proj-data all 9.5.1-1 [7924 kB] 909s Get:87 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 909s Get:88 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 909s Get:89 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 910s Get:90 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 910s Get:91 http://ftpmaster.internal/ubuntu questing/universe s390x libproj25 s390x 9.5.1-1 [1452 kB] 910s Get:92 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbbind-2-5 s390x 2022.0.0-2 [15.3 kB] 910s Get:93 http://ftpmaster.internal/ubuntu questing/universe s390x libtbbmalloc2 s390x 2022.0.0-2 [57.7 kB] 910s Get:94 http://ftpmaster.internal/ubuntu questing/universe s390x libtbb12 s390x 2022.0.0-2 [99.9 kB] 910s Get:95 http://ftpmaster.internal/ubuntu questing/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 910s Get:96 http://ftpmaster.internal/ubuntu questing/main s390x libtheoradec1 s390x 1.2.0~alpha1+dfsg-6 [68.6 kB] 910s Get:97 http://ftpmaster.internal/ubuntu questing/main s390x libtheoraenc1 s390x 1.2.0~alpha1+dfsg-6 [142 kB] 910s Get:98 http://ftpmaster.internal/ubuntu questing/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 910s Get:99 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 910s Get:100 http://ftpmaster.internal/ubuntu questing/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 910s Get:101 http://ftpmaster.internal/ubuntu questing/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 910s Get:102 http://ftpmaster.internal/ubuntu questing/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-4ubuntu1 [27.1 MB] 912s Get:103 http://ftpmaster.internal/ubuntu questing/universe s390x liblammps0t64 s390x 20240207+dfsg-3build3 [7859 kB] 912s Get:104 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-common all 5.0.7-1 [97.9 kB] 912s Get:105 http://ftpmaster.internal/ubuntu questing/main s390x libnl-3-dev s390x 3.7.0-2 [103 kB] 912s Get:106 http://ftpmaster.internal/ubuntu questing/main s390x libnl-route-3-dev s390x 3.7.0-2 [214 kB] 912s Get:107 http://ftpmaster.internal/ubuntu questing/main s390x libibverbs-dev s390x 56.0-4ubuntu1 [717 kB] 912s Get:108 http://ftpmaster.internal/ubuntu questing/main s390x libnuma-dev s390x 2.0.18-1build1 [38.9 kB] 912s Get:109 http://ftpmaster.internal/ubuntu questing/main s390x libltdl7 s390x 2.5.4-4 [43.8 kB] 912s Get:110 http://ftpmaster.internal/ubuntu questing/main s390x libltdl-dev s390x 2.5.4-4 [173 kB] 912s Get:111 http://ftpmaster.internal/ubuntu questing/universe s390x libhwloc-dev s390x 2.12.0-1 [275 kB] 912s Get:112 http://ftpmaster.internal/ubuntu questing/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 912s Get:113 http://ftpmaster.internal/ubuntu questing/universe s390x libpmix-dev s390x 5.0.6-5 [4058 kB] 912s Get:114 http://ftpmaster.internal/ubuntu questing/universe s390x openmpi-bin s390x 5.0.7-1 [200 kB] 912s Get:115 http://ftpmaster.internal/ubuntu questing/universe s390x libopenmpi-dev s390x 5.0.7-1 [1023 kB] 912s Get:116 http://ftpmaster.internal/ubuntu questing/universe s390x mpi-default-dev s390x 1.18 [3324 B] 912s Get:117 http://ftpmaster.internal/ubuntu questing/universe s390x liblammps-dev s390x 20240207+dfsg-3build3 [112 kB] 912s Get:118 http://ftpmaster.internal/ubuntu questing/universe s390x mpi-default-bin s390x 1.18 [2510 B] 912s Get:119 http://ftpmaster.internal/ubuntu questing/universe s390x python3-lammps s390x 20240207+dfsg-3build3 [70.5 kB] 914s Fetched 128 MB in 7s (18.6 MB/s) 914s Selecting previously unselected package m4. 914s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59826 files and directories currently installed.) 914s Preparing to unpack .../000-m4_1.4.19-7_s390x.deb ... 914s Unpacking m4 (1.4.19-7) ... 914s Selecting previously unselected package autoconf. 914s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 914s Unpacking autoconf (2.72-3ubuntu1) ... 914s Selecting previously unselected package autotools-dev. 914s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 914s Unpacking autotools-dev (20220109.1) ... 914s Selecting previously unselected package automake. 914s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 914s Unpacking automake (1:1.17-3ubuntu1) ... 914s Selecting previously unselected package libisl23:s390x. 914s Preparing to unpack .../004-libisl23_0.27-1_s390x.deb ... 914s Unpacking libisl23:s390x (0.27-1) ... 915s Selecting previously unselected package libmpc3:s390x. 915s Preparing to unpack .../005-libmpc3_1.3.1-1build2_s390x.deb ... 915s Unpacking libmpc3:s390x (1.3.1-1build2) ... 915s Selecting previously unselected package cpp-14-s390x-linux-gnu. 915s Preparing to unpack .../006-cpp-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 915s Unpacking cpp-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 915s Selecting previously unselected package cpp-14. 915s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_s390x.deb ... 915s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 915s Selecting previously unselected package fonts-dejavu-mono. 915s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 915s Unpacking fonts-dejavu-mono (2.37-8) ... 915s Selecting previously unselected package fonts-dejavu-core. 915s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 915s Unpacking fonts-dejavu-core (2.37-8) ... 915s Selecting previously unselected package fontconfig-config. 915s Preparing to unpack .../010-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 916s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 916s Selecting previously unselected package libcc1-0:s390x. 916s Preparing to unpack .../011-libcc1-0_15-20250404-0ubuntu1_s390x.deb ... 916s Unpacking libcc1-0:s390x (15-20250404-0ubuntu1) ... 916s Selecting previously unselected package libgomp1:s390x. 916s Preparing to unpack .../012-libgomp1_15-20250404-0ubuntu1_s390x.deb ... 916s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ... 916s Selecting previously unselected package libitm1:s390x. 916s Preparing to unpack .../013-libitm1_15-20250404-0ubuntu1_s390x.deb ... 916s Unpacking libitm1:s390x (15-20250404-0ubuntu1) ... 916s Selecting previously unselected package libasan8:s390x. 916s Preparing to unpack .../014-libasan8_15-20250404-0ubuntu1_s390x.deb ... 916s Unpacking libasan8:s390x (15-20250404-0ubuntu1) ... 916s Selecting previously unselected package libubsan1:s390x. 916s Preparing to unpack .../015-libubsan1_15-20250404-0ubuntu1_s390x.deb ... 916s Unpacking libubsan1:s390x (15-20250404-0ubuntu1) ... 916s Selecting previously unselected package libgcc-14-dev:s390x. 916s Preparing to unpack .../016-libgcc-14-dev_14.2.0-19ubuntu2_s390x.deb ... 916s Unpacking libgcc-14-dev:s390x (14.2.0-19ubuntu2) ... 916s Selecting previously unselected package gcc-14-s390x-linux-gnu. 916s Preparing to unpack .../017-gcc-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 916s Unpacking gcc-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 917s Selecting previously unselected package gcc-14. 917s Preparing to unpack .../018-gcc-14_14.2.0-19ubuntu2_s390x.deb ... 917s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 917s Selecting previously unselected package libgfortran5:s390x. 917s Preparing to unpack .../019-libgfortran5_15-20250404-0ubuntu1_s390x.deb ... 917s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ... 917s Selecting previously unselected package libgfortran-14-dev:s390x. 917s Preparing to unpack .../020-libgfortran-14-dev_14.2.0-19ubuntu2_s390x.deb ... 917s Unpacking libgfortran-14-dev:s390x (14.2.0-19ubuntu2) ... 917s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 917s Preparing to unpack .../021-gfortran-14-s390x-linux-gnu_14.2.0-19ubuntu2_s390x.deb ... 917s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 917s Selecting previously unselected package gfortran-14. 917s Preparing to unpack .../022-gfortran-14_14.2.0-19ubuntu2_s390x.deb ... 917s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 917s Selecting previously unselected package libaec0:s390x. 917s Preparing to unpack .../023-libaec0_1.1.3-1_s390x.deb ... 917s Unpacking libaec0:s390x (1.1.3-1) ... 917s Selecting previously unselected package libblas3:s390x. 918s Preparing to unpack .../024-libblas3_3.12.1-2_s390x.deb ... 918s Unpacking libblas3:s390x (3.12.1-2) ... 918s Selecting previously unselected package libfreetype6:s390x. 918s Preparing to unpack .../025-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 918s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 918s Selecting previously unselected package libfontconfig1:s390x. 918s Preparing to unpack .../026-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 918s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 918s Selecting previously unselected package libpixman-1-0:s390x. 918s Preparing to unpack .../027-libpixman-1-0_0.44.0-3_s390x.deb ... 918s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 918s Selecting previously unselected package libxcb-render0:s390x. 918s Preparing to unpack .../028-libxcb-render0_1.17.0-2_s390x.deb ... 918s Unpacking libxcb-render0:s390x (1.17.0-2) ... 918s Selecting previously unselected package libxcb-shm0:s390x. 918s Preparing to unpack .../029-libxcb-shm0_1.17.0-2_s390x.deb ... 918s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 918s Selecting previously unselected package libxrender1:s390x. 918s Preparing to unpack .../030-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 918s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 918s Selecting previously unselected package libcairo2:s390x. 918s Preparing to unpack .../031-libcairo2_1.18.4-1_s390x.deb ... 918s Unpacking libcairo2:s390x (1.18.4-1) ... 918s Selecting previously unselected package libdeflate0:s390x. 918s Preparing to unpack .../032-libdeflate0_1.23-1_s390x.deb ... 918s Unpacking libdeflate0:s390x (1.23-1) ... 918s Selecting previously unselected package libdouble-conversion3:s390x. 918s Preparing to unpack .../033-libdouble-conversion3_3.3.1-1_s390x.deb ... 918s Unpacking libdouble-conversion3:s390x (3.3.1-1) ... 918s Selecting previously unselected package libevent-2.1-7t64:s390x. 918s Preparing to unpack .../034-libevent-2.1-7t64_2.1.12-stable-10_s390x.deb ... 918s Unpacking libevent-2.1-7t64:s390x (2.1.12-stable-10) ... 918s Selecting previously unselected package libevent-extra-2.1-7t64:s390x. 918s Preparing to unpack .../035-libevent-extra-2.1-7t64_2.1.12-stable-10_s390x.deb ... 918s Unpacking libevent-extra-2.1-7t64:s390x (2.1.12-stable-10) ... 918s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 918s Preparing to unpack .../036-libevent-pthreads-2.1-7t64_2.1.12-stable-10_s390x.deb ... 918s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 918s Selecting previously unselected package libevent-openssl-2.1-7t64:s390x. 918s Preparing to unpack .../037-libevent-openssl-2.1-7t64_2.1.12-stable-10_s390x.deb ... 918s Unpacking libevent-openssl-2.1-7t64:s390x (2.1.12-stable-10) ... 918s Selecting previously unselected package libevent-dev. 918s Preparing to unpack .../038-libevent-dev_2.1.12-stable-10_s390x.deb ... 918s Unpacking libevent-dev (2.1.12-stable-10) ... 918s Selecting previously unselected package librdmacm1t64:s390x. 918s Preparing to unpack .../039-librdmacm1t64_56.0-4ubuntu1_s390x.deb ... 918s Unpacking librdmacm1t64:s390x (56.0-4ubuntu1) ... 918s Selecting previously unselected package libfabric1:s390x. 918s Preparing to unpack .../040-libfabric1_1.17.0-3.1_s390x.deb ... 918s Unpacking libfabric1:s390x (1.17.0-3.1) ... 918s Selecting previously unselected package libfftw3-double3:s390x. 918s Preparing to unpack .../041-libfftw3-double3_3.3.10-2fakesync1build1_s390x.deb ... 918s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 918s Selecting previously unselected package libwayland-server0:s390x. 918s Preparing to unpack .../042-libwayland-server0_1.23.1-3_s390x.deb ... 918s Unpacking libwayland-server0:s390x (1.23.1-3) ... 918s Selecting previously unselected package libx11-xcb1:s390x. 918s Preparing to unpack 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libxcb-xfixes0:s390x (1.17.0-2) ... 918s Selecting previously unselected package libxshmfence1:s390x. 918s Preparing to unpack .../049-libxshmfence1_1.3-1build5_s390x.deb ... 918s Unpacking libxshmfence1:s390x (1.3-1build5) ... 918s Selecting previously unselected package mesa-libgallium:s390x. 918s Preparing to unpack .../050-mesa-libgallium_25.0.3-1ubuntu2_s390x.deb ... 918s Unpacking mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 918s Selecting previously unselected package libgbm1:s390x. 918s Preparing to unpack .../051-libgbm1_25.0.3-1ubuntu2_s390x.deb ... 918s Unpacking libgbm1:s390x (25.0.3-1ubuntu2) ... 918s Selecting previously unselected package libvulkan1:s390x. 918s Preparing to unpack .../052-libvulkan1_1.4.304.0-1_s390x.deb ... 918s Unpacking libvulkan1:s390x (1.4.304.0-1) ... 918s Selecting previously unselected package libgl1-mesa-dri:s390x. 918s Preparing to unpack .../053-libgl1-mesa-dri_25.0.3-1ubuntu2_s390x.deb ... 918s Unpacking libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 918s Selecting previously unselected package libglvnd0:s390x. 918s Preparing to unpack .../054-libglvnd0_1.7.0-1build1_s390x.deb ... 918s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 918s Selecting previously unselected package libxcb-glx0:s390x. 918s Preparing to unpack .../055-libxcb-glx0_1.17.0-2_s390x.deb ... 918s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 918s Selecting previously unselected package libxxf86vm1:s390x. 918s Preparing to unpack .../056-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 918s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 918s Selecting previously unselected package libglx-mesa0:s390x. 918s Preparing to unpack .../057-libglx-mesa0_25.0.3-1ubuntu2_s390x.deb ... 918s Unpacking libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 918s Selecting previously unselected package libglx0:s390x. 918s Preparing to unpack .../058-libglx0_1.7.0-1build1_s390x.deb ... 918s Unpacking libglx0:s390x (1.7.0-1build1) ... 918s Selecting previously unselected package libgl1:s390x. 918s Preparing to unpack .../059-libgl1_1.7.0-1build1_s390x.deb ... 918s Unpacking libgl1:s390x (1.7.0-1build1) ... 918s Selecting previously unselected package libgl2ps1.4. 918s Preparing to unpack .../060-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 918s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 918s Selecting previously unselected package libglew2.2:s390x. 918s Preparing to unpack .../061-libglew2.2_2.2.0-4build1_s390x.deb ... 918s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 918s Selecting previously unselected package libsz2:s390x. 918s Preparing to unpack .../062-libsz2_1.1.3-1_s390x.deb ... 918s Unpacking libsz2:s390x (1.1.3-1) ... 918s Selecting previously unselected package libhdf5-310:s390x. 918s Preparing to unpack .../063-libhdf5-310_1.14.5+repack-3_s390x.deb ... 918s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 918s Selecting previously unselected package libhdf5-hl-310:s390x. 918s Preparing to unpack .../064-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 918s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 918s Selecting previously unselected package libhwloc15:s390x. 918s Preparing to unpack .../065-libhwloc15_2.12.0-1_s390x.deb ... 918s Unpacking libhwloc15:s390x (2.12.0-1) ... 918s Selecting previously unselected package libjpeg-turbo8:s390x. 918s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 918s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 918s Selecting previously unselected package libjpeg8:s390x. 918s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_s390x.deb ... 918s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 919s Selecting previously unselected package libjs-jquery. 919s Preparing to unpack .../068-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 919s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 919s Selecting previously unselected package libjs-jquery-ui. 919s Preparing to unpack .../069-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 919s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 919s Selecting previously unselected package libjsoncpp26:s390x. 919s Preparing to unpack .../070-libjsoncpp26_1.9.6-3_s390x.deb ... 919s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 919s Selecting previously unselected package libkim-api2:s390x. 919s Preparing to unpack .../071-libkim-api2_2.3.0-1ubuntu1_s390x.deb ... 919s Unpacking libkim-api2:s390x (2.3.0-1ubuntu1) ... 919s Selecting previously unselected package liblapack3:s390x. 919s Preparing to unpack .../072-liblapack3_3.12.1-2_s390x.deb ... 919s Unpacking liblapack3:s390x (3.12.1-2) ... 920s Selecting previously unselected package libnetcdf22:s390x. 920s Preparing to unpack .../073-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 920s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 920s Selecting previously unselected package libmunge2:s390x. 920s Preparing to unpack .../074-libmunge2_0.5.16-1_s390x.deb ... 920s Unpacking libmunge2:s390x (0.5.16-1) ... 920s Selecting previously unselected package libpciaccess0:s390x. 920s Preparing to unpack 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922s Selecting previously unselected package libjbig0:s390x. 922s Preparing to unpack .../086-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 922s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 922s Selecting previously unselected package libsharpyuv0:s390x. 922s Preparing to unpack .../087-libsharpyuv0_1.5.0-0.1_s390x.deb ... 922s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 922s Selecting previously unselected package libwebp7:s390x. 922s Preparing to unpack .../088-libwebp7_1.5.0-0.1_s390x.deb ... 922s Unpacking libwebp7:s390x (1.5.0-0.1) ... 922s Selecting previously unselected package libtiff6:s390x. 922s Preparing to unpack .../089-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 922s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 922s Selecting previously unselected package libproj25:s390x. 922s Preparing to unpack .../090-libproj25_9.5.1-1_s390x.deb ... 923s Unpacking libproj25:s390x (9.5.1-1) ... 924s Selecting previously unselected package libtbbbind-2-5:s390x. 924s Preparing to unpack .../091-libtbbbind-2-5_2022.0.0-2_s390x.deb ... 924s Unpacking libtbbbind-2-5:s390x (2022.0.0-2) ... 924s Selecting previously unselected package libtbbmalloc2:s390x. 924s Preparing to unpack .../092-libtbbmalloc2_2022.0.0-2_s390x.deb ... 924s Unpacking libtbbmalloc2:s390x (2022.0.0-2) ... 924s Selecting previously unselected package libtbb12:s390x. 924s Preparing to unpack .../093-libtbb12_2022.0.0-2_s390x.deb ... 924s Unpacking libtbb12:s390x (2022.0.0-2) ... 924s Selecting previously unselected package libtcl8.6:s390x. 924s Preparing to unpack .../094-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 924s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 925s Selecting previously unselected package libtheoradec1:s390x. 925s Preparing to unpack .../095-libtheoradec1_1.2.0~alpha1+dfsg-6_s390x.deb ... 925s Unpacking libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 925s Selecting previously unselected package libtheoraenc1:s390x. 925s Preparing to unpack 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(9.3.0+dfsg1-4ubuntu1) ... 934s Selecting previously unselected package liblammps0t64:s390x. 934s Preparing to unpack .../102-liblammps0t64_20240207+dfsg-3build3_s390x.deb ... 934s Unpacking liblammps0t64:s390x (20240207+dfsg-3build3) ... 935s Selecting previously unselected package openmpi-common. 935s Preparing to unpack .../103-openmpi-common_5.0.7-1_all.deb ... 935s Unpacking openmpi-common (5.0.7-1) ... 935s Selecting previously unselected package libnl-3-dev:s390x. 935s Preparing to unpack .../104-libnl-3-dev_3.7.0-2_s390x.deb ... 935s Unpacking libnl-3-dev:s390x (3.7.0-2) ... 935s Selecting previously unselected package libnl-route-3-dev:s390x. 935s Preparing to unpack .../105-libnl-route-3-dev_3.7.0-2_s390x.deb ... 935s Unpacking libnl-route-3-dev:s390x (3.7.0-2) ... 936s Selecting previously unselected package libibverbs-dev:s390x. 936s Preparing to unpack .../106-libibverbs-dev_56.0-4ubuntu1_s390x.deb ... 936s Unpacking libibverbs-dev:s390x (56.0-4ubuntu1) ... 937s Selecting previously unselected package libnuma-dev:s390x. 937s Preparing to unpack .../107-libnuma-dev_2.0.18-1build1_s390x.deb ... 937s Unpacking libnuma-dev:s390x (2.0.18-1build1) ... 937s Selecting previously unselected package libltdl7:s390x. 937s Preparing to unpack .../108-libltdl7_2.5.4-4_s390x.deb ... 937s Unpacking libltdl7:s390x (2.5.4-4) ... 937s Selecting previously unselected package libltdl-dev:s390x. 937s Preparing to unpack .../109-libltdl-dev_2.5.4-4_s390x.deb ... 937s Unpacking libltdl-dev:s390x (2.5.4-4) ... 937s Selecting previously unselected package libhwloc-dev:s390x. 937s Preparing to unpack .../110-libhwloc-dev_2.12.0-1_s390x.deb ... 937s Unpacking libhwloc-dev:s390x (2.12.0-1) ... 938s Selecting previously unselected package zlib1g-dev:s390x. 938s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 938s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 939s Selecting previously unselected package libpmix-dev:s390x. 939s Preparing to unpack .../112-libpmix-dev_5.0.6-5_s390x.deb ... 939s Unpacking libpmix-dev:s390x (5.0.6-5) ... 939s Selecting previously unselected package openmpi-bin. 939s Preparing to unpack .../113-openmpi-bin_5.0.7-1_s390x.deb ... 939s Unpacking openmpi-bin (5.0.7-1) ... 939s Selecting previously unselected package libopenmpi-dev:s390x. 939s Preparing to unpack .../114-libopenmpi-dev_5.0.7-1_s390x.deb ... 939s Unpacking libopenmpi-dev:s390x (5.0.7-1) ... 940s Selecting previously unselected package mpi-default-dev. 940s Preparing to unpack .../115-mpi-default-dev_1.18_s390x.deb ... 940s Unpacking mpi-default-dev (1.18) ... 941s Selecting previously unselected package liblammps-dev. 941s Preparing to unpack .../116-liblammps-dev_20240207+dfsg-3build3_s390x.deb ... 941s Unpacking liblammps-dev (20240207+dfsg-3build3) ... 941s Selecting previously unselected package mpi-default-bin. 941s Preparing to unpack .../117-mpi-default-bin_1.18_s390x.deb ... 941s Unpacking mpi-default-bin (1.18) ... 941s Selecting previously unselected package python3-lammps. 941s Preparing to unpack .../118-python3-lammps_20240207+dfsg-3build3_s390x.deb ... 941s Unpacking python3-lammps (20240207+dfsg-3build3) ... 941s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 941s Setting up libtbbmalloc2:s390x (2022.0.0-2) ... 941s Setting up libpixman-1-0:s390x (0.44.0-3) ... 941s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 941s Setting up libwayland-server0:s390x (1.23.1-3) ... 941s Setting up libx11-xcb1:s390x (2:1.8.10-2) ... 941s Setting up libpciaccess0:s390x (0.17-3build1) ... 941s Setting up libdouble-conversion3:s390x (3.3.1-1) ... 941s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 941s Setting up libogg0:s390x (1.3.5-3build1) ... 941s Setting up proj-data (9.5.1-1) ... 941s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 941s Setting up libxcb-render0:s390x (1.17.0-2) ... 941s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 941s Setting up libglvnd0:s390x (1.7.0-1build1) ... 941s Setting up libxcb-glx0:s390x (1.17.0-2) ... 941s Setting up libevent-openssl-2.1-7t64:s390x (2.1.12-stable-10) ... 941s Setting up x11-common (1:7.7+23ubuntu4) ... 943s Setting up libdeflate0:s390x (1.23-1) ... 943s Setting up m4 (1.4.19-7) ... 943s Setting up libevent-2.1-7t64:s390x (2.1.12-stable-10) ... 943s Setting up libxcb-shm0:s390x (1.17.0-2) ... 943s Setting up libgomp1:s390x (15-20250404-0ubuntu1) ... 943s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 943s Setting up libaec0:s390x (1.1.3-1) ... 943s Setting up libopengl0:s390x (1.7.0-1build1) ... 943s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 943s Setting up libnuma-dev:s390x (2.0.18-1build1) ... 943s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 943s Setting up libxcb-present0:s390x (1.17.0-2) ... 943s Setting up libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 943s Setting up autotools-dev (20220109.1) ... 943s Setting up libblas3:s390x (3.12.1-2) ... 943s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 943s Setting up libmunge2:s390x (0.5.16-1) ... 943s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 943s Setting up libxcb-sync1:s390x (1.17.0-2) ... 943s Setting up libjsoncpp26:s390x (1.9.6-3) ... 943s Setting up fonts-dejavu-mono (2.37-8) ... 943s Setting up libhwloc15:s390x (2.12.0-1) ... 943s Setting up libmpc3:s390x (1.3.1-1build2) ... 943s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 943s Setting up fonts-dejavu-core (2.37-8) ... 943s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 943s Setting up libltdl7:s390x (2.5.4-4) ... 943s Setting up libfftw3-double3:s390x (3.3.10-2fakesync1build1) ... 943s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ... 943s Setting up libvulkan1:s390x (1.4.304.0-1) ... 943s Setting up autoconf (2.72-3ubuntu1) ... 943s Setting up libevent-extra-2.1-7t64:s390x (2.1.12-stable-10) ... 943s Setting up libwebp7:s390x (1.5.0-0.1) ... 943s Setting up libubsan1:s390x (15-20250404-0ubuntu1) ... 943s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 943s Setting up libnl-3-dev:s390x (3.7.0-2) ... 943s Setting up ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 943s Setting up libxshmfence1:s390x (1.3-1build5) ... 943s Setting up libxcb-randr0:s390x (1.17.0-2) ... 943s Setting up libasan8:s390x (15-20250404-0ubuntu1) ... 943s Setting up openmpi-common (5.0.7-1) ... 943s Setting up librdmacm1t64:s390x (56.0-4ubuntu1) ... 943s Setting up libxss1:s390x (1:1.2.3-1build3) ... 943s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 943s Setting up libisl23:s390x (0.27-1) ... 943s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 943s Setting up libcc1-0:s390x (15-20250404-0ubuntu1) ... 943s Setting up libsz2:s390x (1.1.3-1) ... 943s Setting up libitm1:s390x (15-20250404-0ubuntu1) ... 943s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 943s Setting up automake (1:1.17-3ubuntu1) ... 943s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 943s Setting up libfabric1:s390x (1.17.0-3.1) ... 943s Setting up mesa-libgallium:s390x (25.0.3-1ubuntu2) ... 943s Setting up liblapack3:s390x (3.12.1-2) ... 943s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 943s Setting up libgbm1:s390x (25.0.3-1ubuntu2) ... 943s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 943s Setting up libgl1-mesa-dri:s390x (25.0.3-1ubuntu2) ... 943s Setting up libkim-api2:s390x (2.3.0-1ubuntu1) ... 943s Setting up libhwloc-plugins:s390x (2.12.0-1) ... 943s Setting up libtbbbind-2-5:s390x (2022.0.0-2) ... 943s Setting up libnl-route-3-dev:s390x (3.7.0-2) ... 943s Setting up libltdl-dev:s390x (2.5.4-4) ... 943s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 943s Setting up libevent-dev (2.1.12-stable-10) ... 943s Setting up libpmix2t64:s390x (5.0.6-5) ... 943s Setting up cpp-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 943s Setting up cpp-14 (14.2.0-19ubuntu2) ... 943s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 943s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 943s Setting up libhwloc-dev:s390x (2.12.0-1) ... 943s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 943s Setting up libgcc-14-dev:s390x (14.2.0-19ubuntu2) ... 943s Setting up libpmix-dev:s390x (5.0.6-5) ... 943s Setting up libgfortran-14-dev:s390x (14.2.0-19ubuntu2) ... 943s Setting up libopenmpi40:s390x (5.0.7-1) ... 943s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 943s Setting up libxft2:s390x (2.3.6-1build1) ... 943s Setting up libglx-mesa0:s390x (25.0.3-1ubuntu2) ... 943s Setting up libglx0:s390x (1.7.0-1build1) ... 943s Setting up libproj25:s390x (9.5.1-1) ... 943s Setting up libpnetcdf6:s390x (1.14.0-2) ... 943s Setting up libtk8.6:s390x (8.6.16-1) ... 943s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 943s Setting up libtbb12:s390x (2022.0.0-2) ... 943s Setting up libibverbs-dev:s390x (56.0-4ubuntu1) ... 943s Setting up libcairo2:s390x (1.18.4-1) ... 943s Setting up gcc-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 943s Setting up libgl1:s390x (1.7.0-1build1) ... 943s Setting up libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 943s Setting up libglew2.2:s390x (2.2.0-4build1) ... 943s Setting up openmpi-bin (5.0.7-1) ... 943s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 943s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 943s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 943s Setting up gfortran-14-s390x-linux-gnu (14.2.0-19ubuntu2) ... 943s Setting up mpi-default-bin (1.18) ... 943s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 943s Setting up gcc-14 (14.2.0-19ubuntu2) ... 943s Setting up libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu1) ... 943s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 943s Setting up liblammps0t64:s390x (20240207+dfsg-3build3) ... 943s Setting up libopenmpi-dev:s390x (5.0.7-1) ... 943s update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode 943s Setting up mpi-default-dev (1.18) ... 943s Setting up liblammps-dev (20240207+dfsg-3build3) ... 943s Setting up python3-lammps (20240207+dfsg-3build3) ... 944s Processing triggers for man-db (2.13.0-1) ... 946s Processing triggers for install-info (7.1.1-1) ... 946s Processing triggers for libc-bin (2.41-6ubuntu1) ... 998s autopkgtest [02:50:07]: test command1: cd python/examples; python3 demo.py 998s autopkgtest [02:50:07]: test command1: [----------------------- 998s LAMMPS (7 Feb 2024 - Update 1) 999s 999s Python output: 999s Natoms, mass, x[0][0] coord = 4000 1.0 0.2727243714666721 999s Temperature from compute = 0.750609109548371 999s Energy from equal-style variable = -5.748192616533703 999s Velocity component from atom-style variable = -0.008231833025308041 999s Volume from get_thermo = 4738.213693437576 999s Natoms from get_natoms = 4000 999s Global coords from gather_atoms = 0.2727243714666721 0.1442606170751015 0.02741951954247279 999s Changed x[0][0] via scatter_atoms = 1.272724371466672 999s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 999s using 1 OpenMP thread(s) per MPI task 999s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 999s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 999s 1 by 1 by 1 MPI processor grid 999s Created 4000 atoms 999s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 999s create_atoms CPU = 0.001 seconds 999s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 999s Neighbor list info ... 999s update: every = 20 steps, delay = 0 steps, check = no 999s max neighbors/atom: 2000, page size: 100000 999s master list distance cutoff = 2.8 999s ghost atom cutoff = 2.8 999s binsize = 1.4, bins = 12 12 12 999s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 999s (1) pair lj/cut, perpetual 999s attributes: half, newton on 999s pair build: half/bin/atomonly/newton 999s stencil: half/bin/3d 999s bin: standard 999s Setting up Verlet run ... 999s Unit style : lj 999s Current step : 0 999s Time step : 0.005 999s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 999s Step Temp E_pair E_mol TotEng Press 999s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 999s 100 0.75060911 -5.7481926 0 -4.6225604 0.24772341 999s Loop time of 0.364647 on 1 procs for 100 steps with 4000 atoms 999s 999s Performance: 118470.738 tau/day, 274.238 timesteps/s, 1.097 Matom-step/s 999s 73.3% CPU use with 1 MPI tasks x 1 OpenMP threads 999s 999s MPI task timing breakdown: 999s Section | min time | avg time | max time |%varavg| %total 999s --------------------------------------------------------------- 999s Pair | 0.31423 | 0.31423 | 0.31423 | 0.0 | 86.17 999s Neigh | 0.040816 | 0.040816 | 0.040816 | 0.0 | 11.19 999s Comm | 0.0037377 | 0.0037377 | 0.0037377 | 0.0 | 1.03 999s Output | 3.6127e-05 | 3.6127e-05 | 3.6127e-05 | 0.0 | 0.01 999s Modify | 0.0052962 | 0.0052962 | 0.0052962 | 0.0 | 1.45 999s Other | | 0.000533 | | | 0.15 999s 999s Nlocal: 4000 ave 4000 max 4000 min 999s Histogram: 1 0 0 0 0 0 0 0 0 0 999s Nghost: 5770 ave 5770 max 5770 min 999s Histogram: 1 0 0 0 0 0 0 0 0 0 999s Neighs: 150293 ave 150293 max 150293 min 999s Histogram: 1 0 0 0 0 0 0 0 0 0 999s 999s Total # of neighbors = 150293 999s Ave neighs/atom = 37.57325 999s Neighbor list builds = 5 999s Dangerous builds not checked 999s Total wall time: 0:00:00 999s autopkgtest [02:50:08]: test command1: -----------------------] 1000s autopkgtest [02:50:09]: test command1: - - - - - - - - - - results - - - - - - - - - - 1000s command1 PASS 1000s autopkgtest [02:50:09]: @@@@@@@@@@@@@@@@@@@@ summary 1000s crack PASS 1000s dipole PASS 1000s ellipse PASS 1000s flow PASS 1000s friction PASS 1000s hugo PASS 1000s command1 PASS 1016s nova [W] Using flock in prodstack7-s390x 1016s Creating nova instance adt-questing-s390x-lammps-20250502-023329-juju-7f2275-prod-proposed-migration-environment-2-2f122b34-626a-4371-b5dd-84c4fc083d60 from image adt/ubuntu-questing-s390x-server-20250501.img (UUID 2a693762-e567-4bbe-9838-630e77f0775f)... 1016s nova [W] Timed out waiting for f2fa9f16-058c-4b10-99af-a35739912062 to get deleted. 1016s nova [W] Using flock in prodstack7-s390x 1016s Creating nova instance adt-questing-s390x-lammps-20250502-023329-juju-7f2275-prod-proposed-migration-environment-2-2f122b34-626a-4371-b5dd-84c4fc083d60 from image adt/ubuntu-questing-s390x-server-20250501.img (UUID 2a693762-e567-4bbe-9838-630e77f0775f)... 1016s nova [W] Timed out waiting for 28b5a8ed-3c0d-480b-9143-8409a480aa55 to get deleted.