0s autopkgtest [08:08:35]: starting date and time: 2025-05-02 08:08:35+0000 0s autopkgtest [08:08:35]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [08:08:35]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.t2y8c6lv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:setuptools --apt-upgrade kleborate --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=setuptools/78.1.0-1.2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-19.secgroup --name adt-questing-s390x-kleborate-20250502-080834-juju-7f2275-prod-proposed-migration-environment-20-067796aa-2e29-445d-a1de-64de48819d43 --image adt/ubuntu-questing-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 59s autopkgtest [08:09:34]: testbed dpkg architecture: s390x 59s autopkgtest [08:09:34]: testbed apt version: 3.0.0 59s autopkgtest [08:09:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 59s autopkgtest [08:09:34]: testbed release detected to be: None 60s autopkgtest [08:09:35]: updating testbed package index (apt update) 61s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 61s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 61s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 61s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 61s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [184 kB] 61s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [57.4 kB] 61s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2202 kB] 62s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main s390x Packages [216 kB] 62s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe s390x Packages [1083 kB] 62s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse s390x Packages [15.9 kB] 62s Fetched 3868 kB in 2s (2431 kB/s) 63s Reading package lists... 63s autopkgtest [08:09:38]: upgrading testbed (apt dist-upgrade and autopurge) 63s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 64s Starting 2 pkgProblemResolver with broken count: 0 64s Done 64s Entering ResolveByKeep 64s 64s Calculating upgrade... 64s The following packages will be upgraded: 64s python3-pkg-resources python3-setuptools 64s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s Need to get 805 kB of archives. 64s After this operation, 108 kB of additional disk space will be used. 64s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main s390x python3-pkg-resources all 78.1.0-1.2 [144 kB] 65s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main s390x python3-setuptools all 78.1.0-1.2 [660 kB] 65s Fetched 805 kB in 1s (1089 kB/s) 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81472 files and directories currently installed.) 65s Preparing to unpack .../python3-pkg-resources_78.1.0-1.2_all.deb ... 65s Unpacking python3-pkg-resources (78.1.0-1.2) over (75.8.0-1) ... 66s Preparing to unpack .../python3-setuptools_78.1.0-1.2_all.deb ... 66s Unpacking python3-setuptools (78.1.0-1.2) over (75.8.0-1) ... 66s Setting up python3-pkg-resources (78.1.0-1.2) ... 66s Setting up python3-setuptools (78.1.0-1.2) ... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 67s Solving dependencies... 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s autopkgtest [08:09:45]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr 6 13:39:00 UTC 2025 70s autopkgtest [08:09:45]: @@@@@@@@@@@@@@@@@@@@ apt-source kleborate 88s Get:1 http://ftpmaster.internal/ubuntu questing/universe kleborate 2.4.1-4 (dsc) [2212 B] 88s Get:2 http://ftpmaster.internal/ubuntu questing/universe kleborate 2.4.1-4 (tar) [91.6 MB] 88s Get:3 http://ftpmaster.internal/ubuntu questing/universe kleborate 2.4.1-4 (diff) [5997 kB] 88s gpgv: Signature made Sun Feb 16 22:29:32 2025 UTC 88s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 88s gpgv: issuer "tchet@debian.org" 88s gpgv: Can't check signature: No public key 88s dpkg-source: warning: cannot verify inline signature for ./kleborate_2.4.1-4.dsc: no acceptable signature found 89s autopkgtest [08:10:04]: testing package kleborate version 2.4.1-4 90s autopkgtest [08:10:05]: build not needed 102s autopkgtest [08:10:17]: test run-unit-test: preparing testbed 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Starting pkgProblemResolver with broken count: 0 103s Starting 2 pkgProblemResolver with broken count: 0 103s Done 103s The following NEW packages will be installed: 103s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 103s kaptive kaptive-data kleborate kleborate-examples libblas3 libcairo2 103s libcapnp-1.1.0 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 103s libgfortran5 libgomp1 libgraphite2-3 libgsl28 libgslcblas0 libharfbuzz0b 103s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 103s libmbedcrypto16 libmbedtls21 libmbedx509-7 libmurmurhash2 libopenjp2-7 103s libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 103s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 mash ncbi-blast+ 103s ncbi-data python3-biopython python3-cairo python3-freetype python3-numpy 103s python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo sgml-base 103s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 103s 0 upgraded, 59 newly installed, 0 to remove and 0 not upgraded. 103s Need to get 71.4 MB of archives. 103s After this operation, 276 MB of additional disk space will be used. 103s Get:1 http://ftpmaster.internal/ubuntu questing/main s390x python3-numpy-dev s390x 1:2.2.3+ds-5 [147 kB] 104s Get:2 http://ftpmaster.internal/ubuntu questing/main s390x libblas3 s390x 3.12.1-2 [252 kB] 104s Get:3 http://ftpmaster.internal/ubuntu questing/main s390x libgfortran5 s390x 15-20250404-0ubuntu1 [621 kB] 104s Get:4 http://ftpmaster.internal/ubuntu questing/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 104s Get:5 http://ftpmaster.internal/ubuntu questing/main s390x python3-numpy s390x 1:2.2.3+ds-5 [4396 kB] 104s Get:6 http://ftpmaster.internal/ubuntu questing/main s390x sgml-base all 1.31 [11.4 kB] 104s Get:7 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 104s Get:8 http://ftpmaster.internal/ubuntu questing/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 105s Get:9 http://ftpmaster.internal/ubuntu questing/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB] 105s Get:10 http://ftpmaster.internal/ubuntu questing/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 105s Get:11 http://ftpmaster.internal/ubuntu questing/main s390x x11-common all 1:7.7+23ubuntu4 [21.8 kB] 105s Get:12 http://ftpmaster.internal/ubuntu questing/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 105s Get:13 http://ftpmaster.internal/ubuntu questing/main s390x xfonts-utils s390x 1:7.7+7 [101 kB] 105s Get:14 http://ftpmaster.internal/ubuntu questing/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 105s Get:15 http://ftpmaster.internal/ubuntu questing/main s390x fontconfig-config s390x 2.15.0-2.2ubuntu1 [37.9 kB] 105s Get:16 http://ftpmaster.internal/ubuntu questing/main s390x libgomp1 s390x 15-20250404-0ubuntu1 [152 kB] 105s Get:17 http://ftpmaster.internal/ubuntu questing/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 105s Get:18 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 105s Get:19 http://ftpmaster.internal/ubuntu questing/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 105s Get:20 http://ftpmaster.internal/ubuntu questing/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 105s Get:21 http://ftpmaster.internal/ubuntu questing/main s390x libopenjp2-7 s390x 2.5.3-2 [207 kB] 105s Get:22 http://ftpmaster.internal/ubuntu questing/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 105s Get:23 http://ftpmaster.internal/ubuntu questing/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 105s Get:24 http://ftpmaster.internal/ubuntu questing/main s390x libraqm0 s390x 0.10.2-1 [15.8 kB] 105s Get:25 http://ftpmaster.internal/ubuntu questing/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 105s Get:26 http://ftpmaster.internal/ubuntu questing/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 105s Get:27 http://ftpmaster.internal/ubuntu questing/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 105s Get:28 http://ftpmaster.internal/ubuntu questing/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 105s Get:29 http://ftpmaster.internal/ubuntu questing/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 105s Get:30 http://ftpmaster.internal/ubuntu questing/main s390x libwebpdemux2 s390x 1.5.0-0.1 [12.6 kB] 105s Get:31 http://ftpmaster.internal/ubuntu questing/main s390x libwebpmux3 s390x 1.5.0-0.1 [25.8 kB] 105s Get:32 http://ftpmaster.internal/ubuntu questing/main s390x python3-pil s390x 11.1.0-5build1 [498 kB] 105s Get:33 http://ftpmaster.internal/ubuntu questing/main s390x libfontconfig1 s390x 2.15.0-2.2ubuntu1 [150 kB] 105s Get:34 http://ftpmaster.internal/ubuntu questing/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 105s Get:35 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 105s Get:36 http://ftpmaster.internal/ubuntu questing/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 105s Get:37 http://ftpmaster.internal/ubuntu questing/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 105s Get:38 http://ftpmaster.internal/ubuntu questing/main s390x libcairo2 s390x 1.18.4-1 [580 kB] 105s Get:39 http://ftpmaster.internal/ubuntu questing/main s390x python3-cairo s390x 1.27.0-2 [120 kB] 105s Get:40 http://ftpmaster.internal/ubuntu questing/universe s390x python3-freetype all 2.5.1-1 [92.3 kB] 105s Get:41 http://ftpmaster.internal/ubuntu questing/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B] 105s Get:42 http://ftpmaster.internal/ubuntu questing/universe s390x python3-reportlab all 4.3.1-1 [1137 kB] 105s Get:43 http://ftpmaster.internal/ubuntu questing/main s390x xml-core all 0.19 [20.3 kB] 105s Get:44 http://ftpmaster.internal/ubuntu questing/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 105s Get:45 http://ftpmaster.internal/ubuntu questing/universe s390x python3-biopython s390x 1.85+dfsg-2build1 [1745 kB] 106s Get:46 http://ftpmaster.internal/ubuntu questing/universe s390x ncbi-data all 6.1.20170106+dfsg2-5 [3966 kB] 106s Get:47 http://ftpmaster.internal/ubuntu questing/universe s390x libmbedcrypto16 s390x 3.6.2-3ubuntu1 [261 kB] 106s Get:48 http://ftpmaster.internal/ubuntu questing/universe s390x libmbedx509-7 s390x 3.6.2-3ubuntu1 [34.9 kB] 106s Get:49 http://ftpmaster.internal/ubuntu questing/universe s390x libmbedtls21 s390x 3.6.2-3ubuntu1 [122 kB] 106s Get:50 http://ftpmaster.internal/ubuntu questing/universe s390x ncbi-blast+ s390x 2.16.0+ds-6build1 [15.2 MB] 106s Get:51 http://ftpmaster.internal/ubuntu questing/universe s390x kaptive all 2.0.8-1 [28.1 kB] 106s Get:52 http://ftpmaster.internal/ubuntu questing/universe s390x kaptive-data all 2.0.8-1 [5432 kB] 107s Get:53 http://ftpmaster.internal/ubuntu questing/universe s390x libcapnp-1.1.0 s390x 1.1.0-2 [1441 kB] 107s Get:54 http://ftpmaster.internal/ubuntu questing/universe s390x libgslcblas0 s390x 2.8+dfsg-5ubuntu1 [153 kB] 107s Get:55 http://ftpmaster.internal/ubuntu questing/universe s390x libgsl28 s390x 2.8+dfsg-5ubuntu1 [1126 kB] 107s Get:56 http://ftpmaster.internal/ubuntu questing/universe s390x libmurmurhash2 s390x 1.6-1 [6162 B] 107s Get:57 http://ftpmaster.internal/ubuntu questing/universe s390x mash s390x 2.3+dfsg-6build2 [166 kB] 107s Get:58 http://ftpmaster.internal/ubuntu questing/universe s390x kleborate s390x 2.4.1-4 [8733 kB] 107s Get:59 http://ftpmaster.internal/ubuntu questing/universe s390x kleborate-examples all 2.4.1-4 [5990 kB] 108s Fetched 71.4 MB in 4s (17.3 MB/s) 108s Selecting previously unselected package python3-numpy-dev:s390x. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81486 files and directories currently installed.) 108s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_s390x.deb ... 108s Unpacking python3-numpy-dev:s390x (1:2.2.3+ds-5) ... 108s Selecting previously unselected package libblas3:s390x. 108s Preparing to unpack .../01-libblas3_3.12.1-2_s390x.deb ... 108s Unpacking libblas3:s390x (3.12.1-2) ... 108s Selecting previously unselected package libgfortran5:s390x. 108s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_s390x.deb ... 108s Unpacking libgfortran5:s390x (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package liblapack3:s390x. 108s Preparing to unpack .../03-liblapack3_3.12.1-2_s390x.deb ... 108s Unpacking liblapack3:s390x (3.12.1-2) ... 108s Selecting previously unselected package python3-numpy. 108s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_s390x.deb ... 108s Unpacking python3-numpy (1:2.2.3+ds-5) ... 108s Selecting previously unselected package sgml-base. 108s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 108s Unpacking sgml-base (1.31) ... 108s Selecting previously unselected package fonts-dejavu-mono. 108s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 108s Unpacking fonts-dejavu-mono (2.37-8) ... 108s Selecting previously unselected package fonts-dejavu-core. 108s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 108s Unpacking fonts-dejavu-core (2.37-8) ... 108s Selecting previously unselected package libfontenc1:s390x. 108s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_s390x.deb ... 108s Unpacking libfontenc1:s390x (1:1.1.8-1build1) ... 108s Selecting previously unselected package libfreetype6:s390x. 108s Preparing to unpack .../09-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 108s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 108s Selecting previously unselected package x11-common. 108s Preparing to unpack .../10-x11-common_1%3a7.7+23ubuntu4_all.deb ... 108s Unpacking x11-common (1:7.7+23ubuntu4) ... 108s Selecting previously unselected package xfonts-encodings. 108s Preparing to unpack .../11-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 108s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 108s Selecting previously unselected package xfonts-utils. 108s Preparing to unpack .../12-xfonts-utils_1%3a7.7+7_s390x.deb ... 108s Unpacking xfonts-utils (1:7.7+7) ... 108s Selecting previously unselected package fonts-urw-base35. 108s Preparing to unpack .../13-fonts-urw-base35_20200910-8_all.deb ... 108s Unpacking fonts-urw-base35 (20200910-8) ... 108s Selecting previously unselected package fontconfig-config. 108s Preparing to unpack .../14-fontconfig-config_2.15.0-2.2ubuntu1_s390x.deb ... 108s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 108s Selecting previously unselected package libgomp1:s390x. 108s Preparing to unpack .../15-libgomp1_15-20250404-0ubuntu1_s390x.deb ... 108s Unpacking libgomp1:s390x (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package libimagequant0:s390x. 108s Preparing to unpack .../16-libimagequant0_2.18.0-1build1_s390x.deb ... 108s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 108s Selecting previously unselected package libjpeg-turbo8:s390x. 108s Preparing to unpack .../17-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 108s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 108s Selecting previously unselected package libjpeg8:s390x. 108s Preparing to unpack .../18-libjpeg8_8c-2ubuntu11_s390x.deb ... 108s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 108s Selecting previously unselected package liblcms2-2:s390x. 108s Preparing to unpack .../19-liblcms2-2_2.16-2_s390x.deb ... 108s Unpacking liblcms2-2:s390x (2.16-2) ... 108s Selecting previously unselected package libopenjp2-7:s390x. 108s Preparing to unpack .../20-libopenjp2-7_2.5.3-2_s390x.deb ... 108s Unpacking libopenjp2-7:s390x (2.5.3-2) ... 108s Selecting previously unselected package libgraphite2-3:s390x. 108s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 108s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 108s Selecting previously unselected package libharfbuzz0b:s390x. 108s Preparing to unpack .../22-libharfbuzz0b_10.2.0-1_s390x.deb ... 108s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 108s Selecting previously unselected package libraqm0:s390x. 108s Preparing to unpack .../23-libraqm0_0.10.2-1_s390x.deb ... 108s Unpacking libraqm0:s390x (0.10.2-1) ... 108s Selecting previously unselected package libdeflate0:s390x. 108s Preparing to unpack .../24-libdeflate0_1.23-1_s390x.deb ... 108s Unpacking libdeflate0:s390x (1.23-1) ... 108s Selecting previously unselected package libjbig0:s390x. 108s Preparing to unpack .../25-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 108s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 108s Selecting previously unselected package libsharpyuv0:s390x. 108s Preparing to unpack .../26-libsharpyuv0_1.5.0-0.1_s390x.deb ... 108s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 108s Selecting previously unselected package libwebp7:s390x. 108s Preparing to unpack .../27-libwebp7_1.5.0-0.1_s390x.deb ... 108s Unpacking libwebp7:s390x (1.5.0-0.1) ... 108s Selecting previously unselected package libtiff6:s390x. 108s Preparing to unpack .../28-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 108s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 108s Selecting previously unselected package libwebpdemux2:s390x. 108s Preparing to unpack .../29-libwebpdemux2_1.5.0-0.1_s390x.deb ... 108s Unpacking libwebpdemux2:s390x (1.5.0-0.1) ... 108s Selecting previously unselected package libwebpmux3:s390x. 108s Preparing to unpack .../30-libwebpmux3_1.5.0-0.1_s390x.deb ... 108s Unpacking libwebpmux3:s390x (1.5.0-0.1) ... 108s Selecting previously unselected package python3-pil:s390x. 108s Preparing to unpack .../31-python3-pil_11.1.0-5build1_s390x.deb ... 108s Unpacking python3-pil:s390x (11.1.0-5build1) ... 108s Selecting previously unselected package libfontconfig1:s390x. 108s Preparing to unpack .../32-libfontconfig1_2.15.0-2.2ubuntu1_s390x.deb ... 108s Unpacking libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 108s Selecting previously unselected package libpixman-1-0:s390x. 108s Preparing to unpack .../33-libpixman-1-0_0.44.0-3_s390x.deb ... 108s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 108s Selecting previously unselected package libxcb-render0:s390x. 108s Preparing to unpack .../34-libxcb-render0_1.17.0-2_s390x.deb ... 108s Unpacking libxcb-render0:s390x (1.17.0-2) ... 108s Selecting previously unselected package libxcb-shm0:s390x. 108s Preparing to unpack .../35-libxcb-shm0_1.17.0-2_s390x.deb ... 108s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 108s Selecting previously unselected package libxrender1:s390x. 108s Preparing to unpack .../36-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 108s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 108s Selecting previously unselected package libcairo2:s390x. 108s Preparing to unpack .../37-libcairo2_1.18.4-1_s390x.deb ... 109s Unpacking libcairo2:s390x (1.18.4-1) ... 109s Selecting previously unselected package python3-cairo. 109s Preparing to unpack .../38-python3-cairo_1.27.0-2_s390x.deb ... 109s Unpacking python3-cairo (1.27.0-2) ... 109s Selecting previously unselected package python3-freetype. 109s Preparing to unpack .../39-python3-freetype_2.5.1-1_all.deb ... 109s Unpacking python3-freetype (2.5.1-1) ... 109s Selecting previously unselected package python3-rlpycairo. 109s Preparing to unpack .../40-python3-rlpycairo_0.3.0-3_all.deb ... 109s Unpacking python3-rlpycairo (0.3.0-3) ... 109s Selecting previously unselected package python3-reportlab. 109s Preparing to unpack .../41-python3-reportlab_4.3.1-1_all.deb ... 109s Unpacking python3-reportlab (4.3.1-1) ... 109s Selecting previously unselected package xml-core. 109s Preparing to unpack .../42-xml-core_0.19_all.deb ... 109s Unpacking xml-core (0.19) ... 109s Selecting previously unselected package w3c-sgml-lib. 109s Preparing to unpack .../43-w3c-sgml-lib_1.3-3_all.deb ... 109s Unpacking w3c-sgml-lib (1.3-3) ... 109s Selecting previously unselected package python3-biopython. 109s Preparing to unpack .../44-python3-biopython_1.85+dfsg-2build1_s390x.deb ... 109s Unpacking python3-biopython (1.85+dfsg-2build1) ... 109s Selecting previously unselected package ncbi-data. 109s Preparing to unpack .../45-ncbi-data_6.1.20170106+dfsg2-5_all.deb ... 109s Unpacking ncbi-data (6.1.20170106+dfsg2-5) ... 109s Selecting previously unselected package libmbedcrypto16:s390x. 109s Preparing to unpack .../46-libmbedcrypto16_3.6.2-3ubuntu1_s390x.deb ... 109s Unpacking libmbedcrypto16:s390x (3.6.2-3ubuntu1) ... 109s Selecting previously unselected package libmbedx509-7:s390x. 109s Preparing to unpack .../47-libmbedx509-7_3.6.2-3ubuntu1_s390x.deb ... 109s Unpacking libmbedx509-7:s390x (3.6.2-3ubuntu1) ... 109s Selecting previously unselected package libmbedtls21:s390x. 109s Preparing to unpack .../48-libmbedtls21_3.6.2-3ubuntu1_s390x.deb ... 109s Unpacking libmbedtls21:s390x (3.6.2-3ubuntu1) ... 109s Selecting previously unselected package ncbi-blast+. 109s Preparing to unpack .../49-ncbi-blast+_2.16.0+ds-6build1_s390x.deb ... 109s Unpacking ncbi-blast+ (2.16.0+ds-6build1) ... 109s Selecting previously unselected package kaptive. 109s Preparing to unpack .../50-kaptive_2.0.8-1_all.deb ... 109s Unpacking kaptive (2.0.8-1) ... 109s Selecting previously unselected package kaptive-data. 109s Preparing to unpack .../51-kaptive-data_2.0.8-1_all.deb ... 109s Unpacking kaptive-data (2.0.8-1) ... 109s Selecting previously unselected package libcapnp-1.1.0:s390x. 109s Preparing to unpack .../52-libcapnp-1.1.0_1.1.0-2_s390x.deb ... 109s Unpacking libcapnp-1.1.0:s390x (1.1.0-2) ... 109s Selecting previously unselected package libgslcblas0:s390x. 109s Preparing to unpack .../53-libgslcblas0_2.8+dfsg-5ubuntu1_s390x.deb ... 109s Unpacking libgslcblas0:s390x (2.8+dfsg-5ubuntu1) ... 109s Selecting previously unselected package libgsl28:s390x. 109s Preparing to unpack .../54-libgsl28_2.8+dfsg-5ubuntu1_s390x.deb ... 109s Unpacking libgsl28:s390x (2.8+dfsg-5ubuntu1) ... 109s Selecting previously unselected package libmurmurhash2:s390x. 109s Preparing to unpack .../55-libmurmurhash2_1.6-1_s390x.deb ... 109s Unpacking libmurmurhash2:s390x (1.6-1) ... 109s Selecting previously unselected package mash. 109s Preparing to unpack .../56-mash_2.3+dfsg-6build2_s390x.deb ... 109s Unpacking mash (2.3+dfsg-6build2) ... 109s Selecting previously unselected package kleborate. 109s Preparing to unpack .../57-kleborate_2.4.1-4_s390x.deb ... 109s Unpacking kleborate (2.4.1-4) ... 110s Selecting previously unselected package kleborate-examples. 110s Preparing to unpack .../58-kleborate-examples_2.4.1-4_all.deb ... 110s Unpacking kleborate-examples (2.4.1-4) ... 110s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 110s Setting up liblcms2-2:s390x (2.16-2) ... 110s Setting up ncbi-data (6.1.20170106+dfsg2-5) ... 110s Setting up libpixman-1-0:s390x (0.44.0-3) ... 110s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 110s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 110s Setting up libgslcblas0:s390x (2.8+dfsg-5ubuntu1) ... 110s Setting up libmurmurhash2:s390x (1.6-1) ... 110s Setting up libxcb-render0:s390x (1.17.0-2) ... 110s Setting up x11-common (1:7.7+23ubuntu4) ... 110s Setting up libdeflate0:s390x (1.23-1) ... 110s Setting up libxcb-shm0:s390x (1.17.0-2) ... 110s Setting up libgomp1:s390x (15-20250404-0ubuntu1) ... 110s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 110s Setting up libfontenc1:s390x (1:1.1.8-1build1) ... 110s Setting up libblas3:s390x (3.12.1-2) ... 110s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 110s Setting up kleborate-examples (2.4.1-4) ... 110s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 110s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 110s Setting up libimagequant0:s390x (2.18.0-1build1) ... 110s Setting up fonts-dejavu-mono (2.37-8) ... 110s Setting up python3-numpy-dev:s390x (1:2.2.3+ds-5) ... 110s Setting up fonts-dejavu-core (2.37-8) ... 110s Setting up kaptive-data (2.0.8-1) ... 110s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 110s Setting up libgfortran5:s390x (15-20250404-0ubuntu1) ... 110s Setting up libwebp7:s390x (1.5.0-0.1) ... 110s Setting up libopenjp2-7:s390x (2.5.3-2) ... 110s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 110s Setting up sgml-base (1.31) ... 110s Setting up libcapnp-1.1.0:s390x (1.1.0-2) ... 110s Setting up libmbedcrypto16:s390x (3.6.2-3ubuntu1) ... 110s Setting up libgsl28:s390x (2.8+dfsg-5ubuntu1) ... 110s Setting up libwebpmux3:s390x (1.5.0-0.1) ... 110s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 110s Setting up liblapack3:s390x (3.12.1-2) ... 110s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 110s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 110s Setting up libwebpdemux2:s390x (1.5.0-0.1) ... 110s Setting up python3-freetype (2.5.1-1) ... 110s Setting up xfonts-utils (1:7.7+7) ... 110s Setting up libmbedx509-7:s390x (3.6.2-3ubuntu1) ... 110s Setting up libraqm0:s390x (0.10.2-1) ... 110s Setting up mash (2.3+dfsg-6build2) ... 110s Setting up python3-numpy (1:2.2.3+ds-5) ... 111s Setting up libmbedtls21:s390x (3.6.2-3ubuntu1) ... 111s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 111s Setting up xml-core (0.19) ... 111s Setting up libfontconfig1:s390x (2.15.0-2.2ubuntu1) ... 111s Setting up fonts-urw-base35 (20200910-8) ... 112s Setting up libcairo2:s390x (1.18.4-1) ... 112s Setting up ncbi-blast+ (2.16.0+ds-6build1) ... 112s Setting up python3-pil:s390x (11.1.0-5build1) ... 112s Setting up python3-cairo (1.27.0-2) ... 112s Setting up python3-rlpycairo (0.3.0-3) ... 112s Setting up python3-reportlab (4.3.1-1) ... 112s Processing triggers for man-db (2.13.0-1) ... 113s Processing triggers for libc-bin (2.41-6ubuntu1) ... 113s Processing triggers for sgml-base (1.31) ... 113s Setting up w3c-sgml-lib (1.3-3) ... 134s Setting up python3-biopython (1.85+dfsg-2build1) ... 134s Setting up kaptive (2.0.8-1) ... 134s Setting up kleborate (2.4.1-4) ... 136s autopkgtest [08:10:51]: test run-unit-test: [----------------------- 137s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 137s warnings.warn( 183s strain species ST virulence_score Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus 183s Klebs_HS11286 Klebsiella pneumoniae ST11 1 ybt 9; ICEKp3 15 - 0 - 0 - 0 - 0 - wzi74 KL103 183s Klebs_Kp1084 Klebsiella pneumoniae ST23 2 ybt 1; ICEKp10 47 clb 2 37 - 0 - 0 - 0 - wzi172 KL1 183s MGH78578 Klebsiella pneumoniae ST38 0 - 0 - 0 - 0 - 0 - 0 - wzi50 KL15 (KL17,KL51,KL52) 183s NTUH-K2044 Klebsiella pneumoniae ST23 4 ybt 2; ICEKp1 326 - 0 iuc 1 1 iro 1,iro 3 19,18 rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated) 26-1LV,119 rmpA2_3-47% wzi1 KL1 183s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 183s warnings.warn( 261s strain species ST virulence_score resistance_score Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus AGly_acquired Col_acquired Fcyn_acquired Flq_acquired Gly_acquired MLS_acquired Phe_acquired Rif_acquired Sul_acquired Tet_acquired Tgc_acquired Tmt_acquired Bla_acquired Bla_inhR_acquired Bla_ESBL_acquired Bla_ESBL_inhR_acquired Bla_Carb_acquired Bla_chr SHV_mutations Omp_mutations Col_mutations Flq_mutations truncated_resistance_hits spurious_resistance_hits 261s Klebs_HS11286 Klebsiella pneumoniae ST11 1 3 ybt 9; ICEKp3 15 - 0 - 0 - 0 - 0 - wzi74 KL103 aadA2^;rmtB;strA.v1^;strB.v1 - - - - - - - sul2 tet(G).v1 - dfrA12* TEM-1;TEM-1;TEM-1 - CTX-M-14;CTX-M-14 - KPC-2 SHV-11 35Q OmpK35-40% PmrB-10% GyrA-83I;ParC-80I aac(3)-IId*?-0% floR.v2*?;sul1?-63% 261s Klebs_Kp1084 Klebsiella pneumoniae ST23 2 0 ybt 1; ICEKp10 47 clb 2 37 - 0 - 0 - 0 - wzi172 KL1 - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 261s MGH78578 Klebsiella pneumoniae ST38 0 1 - 0 - 0 - 0 - 0 - 0 - wzi50 KL15 (KL17,KL51,KL52) aac(6')-Ib'.v1;aadA*;ant(2'')-Ia;aph(3')-Ia;strA.v1;strB.v1 - - - - - catA1*;cmlA5 - sul1;sul2 tet(D) - - TEM-1D.v1^;TEM-1D.v1^ - SHV-12 - - SHV-11^ 238S;240K;35Q;35Q OmpK35-86% - GyrA-83Y OXA-9.v1*-42% - 261s NTUH-K2044 Klebsiella pneumoniae ST23 4 0 ybt 2; ICEKp1 326 - 0 iuc 1 1 iro 1,iro 3 19,18 rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated) 26-1LV,119 rmpA2_3-47% wzi1 KL1 - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 261s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 261s warnings.warn( 688s strain species ST virulence_score resistance_score Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus K_locus_confidence O_locus O_locus_confidence AGly_acquired Col_acquired Fcyn_acquired Flq_acquired Gly_acquired MLS_acquired Phe_acquired Rif_acquired Sul_acquired Tet_acquired Tgc_acquired Tmt_acquired Bla_acquired Bla_inhR_acquired Bla_ESBL_acquired Bla_ESBL_inhR_acquired Bla_Carb_acquired Bla_chr SHV_mutations Omp_mutations Col_mutations Flq_mutations truncated_resistance_hits spurious_resistance_hits 688s Klebs_HS11286 Klebsiella pneumoniae ST11 1 3 ybt 9; ICEKp3 15 - 0 - 0 - 0 - 0 - wzi74 KL103 Very high O1/O2v1 Very high aadA2^;rmtB;strA.v1^;strB.v1 - - - - - - - sul2 tet(G).v1 - dfrA12* TEM-1;TEM-1;TEM-1 - CTX-M-14;CTX-M-14 - KPC-2 SHV-11 35Q OmpK35-40% PmrB-10% GyrA-83I;ParC-80I aac(3)-IId*?-0% floR.v2*?;sul1?-63% 688s Klebs_Kp1084 Klebsiella pneumoniae ST23 2 0 ybt 1; ICEKp10 47 clb 2 37 - 0 - 0 - 0 - wzi172 unknown (KL1) None O1/O2v2 High - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 688s MGH78578 Klebsiella pneumoniae ST38 0 1 - 0 - 0 - 0 - 0 - 0 - wzi50 KL52 Perfect OL13 High aac(6')-Ib'.v1;aadA*;ant(2'')-Ia;aph(3')-Ia;strA.v1;strB.v1 - - - - - catA1*;cmlA5 - sul1;sul2 tet(D) - - TEM-1D.v1^;TEM-1D.v1^ - SHV-12 - - SHV-11^ 238S;240K;35Q;35Q OmpK35-86% - GyrA-83Y OXA-9.v1*-42% - 688s NTUH-K2044 Klebsiella pneumoniae ST23 4 0 ybt 2; ICEKp1 326 - 0 iuc 1 1 iro 1,iro 3 19,18 rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated) 26-1LV,119 rmpA2_3-47% wzi1 KL1 Perfect O1/O2v2 Very high - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 689s autopkgtest [08:20:04]: test run-unit-test: -----------------------] 689s autopkgtest [08:20:04]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 689s run-unit-test PASS 690s autopkgtest [08:20:05]: @@@@@@@@@@@@@@@@@@@@ summary 690s run-unit-test PASS 696s nova [W] Using flock in prodstack6-s390x 696s Creating nova instance adt-questing-s390x-kleborate-20250502-080834-juju-7f2275-prod-proposed-migration-environment-20-067796aa-2e29-445d-a1de-64de48819d43 from image adt/ubuntu-questing-s390x-server-20250502.img (UUID 632ecfca-a19d-4f3a-af48-b7883fa0ccf2)... 696s nova [W] Timed out waiting for e117ae13-357f-4942-86c6-386d20b7c3f3 to get deleted.