0s autopkgtest [12:44:22]: starting date and time: 2025-05-06 12:44:22+0000
  1s autopkgtest [12:44:23]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  1s autopkgtest [12:44:23]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ho15ofi6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:nlme --apt-upgrade r-bioc-qusage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=nlme/3.1.168-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-3.secgroup --name adt-questing-ppc64el-r-bioc-qusage-20250506-114536-juju-7f2275-prod-proposed-migration-environment-20-d349a8e3-2ed4-40e2-9e59-e15fa293e018 --image adt/ubuntu-questing-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
 68s autopkgtest [12:45:30]: testbed dpkg architecture: ppc64el
 68s autopkgtest [12:45:30]: testbed apt version: 3.0.0
 69s autopkgtest [12:45:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 69s autopkgtest [12:45:31]: testbed release detected to be: None
 70s autopkgtest [12:45:32]: updating testbed package index (apt update)
 70s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
 70s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
 70s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
 70s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
 70s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [72.4 kB]
 70s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [595 kB]
 71s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [27.3 kB]
 71s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el Packages [139 kB]
 71s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el Packages [601 kB]
 71s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse ppc64el Packages [18.1 kB]
 71s Fetched 1563 kB in 1s (1612 kB/s)
 72s Reading package lists...
 72s autopkgtest [12:45:34]: upgrading testbed (apt dist-upgrade and autopurge)
 72s Reading package lists...
 73s Building dependency tree...
 73s Reading state information...
 73s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 73s Starting 2 pkgProblemResolver with broken count: 0
 73s Done
 73s Entering ResolveByKeep
 74s 
 74s Calculating upgrade...
 74s The following packages will be upgraded:
 74s   dhcpcd-base dirmngr gir1.2-glib-2.0 gnupg gnupg-l10n gnupg-utils gpg
 74s   gpg-agent gpg-wks-client gpgconf gpgsm gpgv groff-base keyboxd
 74s   libglib2.0-0t64 libglib2.0-data libnuma1 libperl5.40 libpython3.12-minimal
 74s   libpython3.12-stdlib libpython3.12t64 libsemanage-common libsemanage2
 74s   libx11-6 libx11-data libxml2 numactl openssh-client openssh-server
 74s   openssh-sftp-server perl perl-base perl-modules-5.40 python3-dbus
 74s   python3-wadllib
 74s 35 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 74s Need to get 25.9 MB of archives.
 74s After this operation, 287 kB disk space will be freed.
 74s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el libperl5.40 ppc64el 5.40.1-3 [4949 kB]
 75s Get:2 http://ftpmaster.internal/ubuntu questing/main ppc64el perl ppc64el 5.40.1-3 [262 kB]
 75s Get:3 http://ftpmaster.internal/ubuntu questing/main ppc64el perl-base ppc64el 5.40.1-3 [1923 kB]
 75s Get:4 http://ftpmaster.internal/ubuntu questing/main ppc64el perl-modules-5.40 all 5.40.1-3 [3217 kB]
 75s Get:5 http://ftpmaster.internal/ubuntu questing/main ppc64el openssh-sftp-server ppc64el 1:9.9p1-3ubuntu3.1 [43.4 kB]
 75s Get:6 http://ftpmaster.internal/ubuntu questing/main ppc64el openssh-server ppc64el 1:9.9p1-3ubuntu3.1 [679 kB]
 75s Get:7 http://ftpmaster.internal/ubuntu questing/main ppc64el openssh-client ppc64el 1:9.9p1-3ubuntu3.1 [1168 kB]
 75s Get:8 http://ftpmaster.internal/ubuntu questing/main ppc64el libsemanage-common all 3.8.1-1 [7826 B]
 75s Get:9 http://ftpmaster.internal/ubuntu questing/main ppc64el libsemanage2 ppc64el 3.8.1-1 [121 kB]
 75s Get:10 http://ftpmaster.internal/ubuntu questing/main ppc64el gpg-wks-client ppc64el 2.4.4-2ubuntu24 [84.3 kB]
 75s Get:11 http://ftpmaster.internal/ubuntu questing/main ppc64el dirmngr ppc64el 2.4.4-2ubuntu24 [390 kB]
 75s Get:12 http://ftpmaster.internal/ubuntu questing/main ppc64el gpgsm ppc64el 2.4.4-2ubuntu24 [292 kB]
 75s Get:13 http://ftpmaster.internal/ubuntu questing/main ppc64el gnupg-utils ppc64el 2.4.4-2ubuntu24 [123 kB]
 75s Get:14 http://ftpmaster.internal/ubuntu questing/main ppc64el gpg-agent ppc64el 2.4.4-2ubuntu24 [275 kB]
 75s Get:15 http://ftpmaster.internal/ubuntu questing/main ppc64el gpg ppc64el 2.4.4-2ubuntu24 [707 kB]
 75s Get:16 http://ftpmaster.internal/ubuntu questing/main ppc64el gpgconf ppc64el 2.4.4-2ubuntu24 [115 kB]
 75s Get:17 http://ftpmaster.internal/ubuntu questing/main ppc64el gnupg all 2.4.4-2ubuntu24 [359 kB]
 75s Get:18 http://ftpmaster.internal/ubuntu questing/main ppc64el keyboxd ppc64el 2.4.4-2ubuntu24 [93.1 kB]
 75s Get:19 http://ftpmaster.internal/ubuntu questing/main ppc64el gpgv ppc64el 2.4.4-2ubuntu24 [197 kB]
 75s Get:20 http://ftpmaster.internal/ubuntu questing/main ppc64el dhcpcd-base ppc64el 1:10.1.0-10 [280 kB]
 75s Get:21 http://ftpmaster.internal/ubuntu questing/main ppc64el gir1.2-glib-2.0 ppc64el 2.84.1-2 [184 kB]
 75s Get:22 http://ftpmaster.internal/ubuntu questing/main ppc64el libglib2.0-0t64 ppc64el 2.84.1-2 [1803 kB]
 75s Get:23 http://ftpmaster.internal/ubuntu questing/main ppc64el libglib2.0-data all 2.84.1-2 [53.2 kB]
 75s Get:24 http://ftpmaster.internal/ubuntu questing/main ppc64el libxml2 ppc64el 2.12.7+dfsg+really2.9.14-0.4ubuntu0.1 [836 kB]
 75s Get:25 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-dbus ppc64el 1.4.0-1 [109 kB]
 75s Get:26 http://ftpmaster.internal/ubuntu questing/main ppc64el groff-base ppc64el 1.23.0-8 [1110 kB]
 75s Get:27 http://ftpmaster.internal/ubuntu questing/main ppc64el libnuma1 ppc64el 2.0.19-1 [27.9 kB]
 75s Get:28 http://ftpmaster.internal/ubuntu questing/main ppc64el libx11-data all 2:1.8.12-1 [116 kB]
 75s Get:29 http://ftpmaster.internal/ubuntu questing/main ppc64el libx11-6 ppc64el 2:1.8.12-1 [739 kB]
 75s Get:30 http://ftpmaster.internal/ubuntu questing/main ppc64el numactl ppc64el 2.0.19-1 [43.2 kB]
 75s Get:31 http://ftpmaster.internal/ubuntu questing/main ppc64el gnupg-l10n all 2.4.4-2ubuntu24 [66.8 kB]
 75s Get:32 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el libpython3.12t64 ppc64el 3.12.10-1 [2558 kB]
 75s Get:33 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el libpython3.12-stdlib ppc64el 3.12.10-1 [2105 kB]
 76s Get:34 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el libpython3.12-minimal ppc64el 3.12.10-1 [841 kB]
 76s Get:35 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-wadllib all 2.0.0-3 [36.3 kB]
 76s Preconfiguring packages ...
 76s Fetched 25.9 MB in 2s (15.2 MB/s)
 77s (Reading database ... 
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(Reading database ... 107214 files and directories currently installed.)
 77s Preparing to unpack .../libperl5.40_5.40.1-3_ppc64el.deb ...
 77s Unpacking libperl5.40:ppc64el (5.40.1-3) over (5.40.1-2) ...
 77s Preparing to unpack .../perl_5.40.1-3_ppc64el.deb ...
 77s Unpacking perl (5.40.1-3) over (5.40.1-2) ...
 77s Preparing to unpack .../perl-base_5.40.1-3_ppc64el.deb ...
 77s Unpacking perl-base (5.40.1-3) over (5.40.1-2) ...
 77s Setting up perl-base (5.40.1-3) ...
 77s (Reading database ... 
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(Reading database ... 107214 files and directories currently installed.)
 77s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ...
 77s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2) ...
 77s Preparing to unpack .../openssh-sftp-server_1%3a9.9p1-3ubuntu3.1_ppc64el.deb ...
 77s Unpacking openssh-sftp-server (1:9.9p1-3ubuntu3.1) over (1:9.9p1-3ubuntu3) ...
 77s Preparing to unpack .../openssh-server_1%3a9.9p1-3ubuntu3.1_ppc64el.deb ...
 77s Unpacking openssh-server (1:9.9p1-3ubuntu3.1) over (1:9.9p1-3ubuntu3) ...
 77s Preparing to unpack .../openssh-client_1%3a9.9p1-3ubuntu3.1_ppc64el.deb ...
 77s Unpacking openssh-client (1:9.9p1-3ubuntu3.1) over (1:9.9p1-3ubuntu3) ...
 77s Preparing to unpack .../libsemanage-common_3.8.1-1_all.deb ...
 77s Unpacking libsemanage-common (3.8.1-1) over (3.7-2.1build1) ...
 77s Setting up libsemanage-common (3.8.1-1) ...
 77s (Reading database ... 
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(Reading database ... 107214 files and directories currently installed.)
 77s Preparing to unpack .../libsemanage2_3.8.1-1_ppc64el.deb ...
 77s Unpacking libsemanage2:ppc64el (3.8.1-1) over (3.7-2.1build1) ...
 77s Setting up libsemanage2:ppc64el (3.8.1-1) ...
 77s (Reading database ... 
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(Reading database ... 107214 files and directories currently installed.)
 77s Preparing to unpack .../0-gpg-wks-client_2.4.4-2ubuntu24_ppc64el.deb ...
 77s Unpacking gpg-wks-client (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 77s Preparing to unpack .../1-dirmngr_2.4.4-2ubuntu24_ppc64el.deb ...
 77s Unpacking dirmngr (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 77s Preparing to unpack .../2-gpgsm_2.4.4-2ubuntu24_ppc64el.deb ...
 77s Unpacking gpgsm (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 77s Preparing to unpack .../3-gnupg-utils_2.4.4-2ubuntu24_ppc64el.deb ...
 77s Unpacking gnupg-utils (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 77s Preparing to unpack .../4-gpg-agent_2.4.4-2ubuntu24_ppc64el.deb ...
 77s Unpacking gpg-agent (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 78s Preparing to unpack .../5-gpg_2.4.4-2ubuntu24_ppc64el.deb ...
 78s Unpacking gpg (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 78s Preparing to unpack .../6-gpgconf_2.4.4-2ubuntu24_ppc64el.deb ...
 78s Unpacking gpgconf (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 78s Preparing to unpack .../7-gnupg_2.4.4-2ubuntu24_all.deb ...
 78s Unpacking gnupg (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 78s Preparing to unpack .../8-keyboxd_2.4.4-2ubuntu24_ppc64el.deb ...
 78s Unpacking keyboxd (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 78s Preparing to unpack .../9-gpgv_2.4.4-2ubuntu24_ppc64el.deb ...
 78s Unpacking gpgv (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 78s Setting up gpgv (2.4.4-2ubuntu24) ...
 78s (Reading database ... 
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(Reading database ... 107214 files and directories currently installed.)
 78s Preparing to unpack .../00-dhcpcd-base_1%3a10.1.0-10_ppc64el.deb ...
 78s Unpacking dhcpcd-base (1:10.1.0-10) over (1:10.1.0-8) ...
 78s Preparing to unpack .../01-gir1.2-glib-2.0_2.84.1-2_ppc64el.deb ...
 78s Unpacking gir1.2-glib-2.0:ppc64el (2.84.1-2) over (2.84.1-1) ...
 78s Preparing to unpack .../02-libglib2.0-0t64_2.84.1-2_ppc64el.deb ...
 78s Unpacking libglib2.0-0t64:ppc64el (2.84.1-2) over (2.84.1-1) ...
 78s Preparing to unpack .../03-libglib2.0-data_2.84.1-2_all.deb ...
 78s Unpacking libglib2.0-data (2.84.1-2) over (2.84.1-1) ...
 78s Preparing to unpack .../04-libxml2_2.12.7+dfsg+really2.9.14-0.4ubuntu0.1_ppc64el.deb ...
 78s Unpacking libxml2:ppc64el (2.12.7+dfsg+really2.9.14-0.4ubuntu0.1) over (2.12.7+dfsg+really2.9.14-0.4) ...
 78s Preparing to unpack .../05-python3-dbus_1.4.0-1_ppc64el.deb ...
 78s Unpacking python3-dbus (1.4.0-1) over (1.3.2-5build5) ...
 78s Preparing to unpack .../06-groff-base_1.23.0-8_ppc64el.deb ...
 78s Unpacking groff-base (1.23.0-8) over (1.23.0-7) ...
 78s Preparing to unpack .../07-libnuma1_2.0.19-1_ppc64el.deb ...
 78s Unpacking libnuma1:ppc64el (2.0.19-1) over (2.0.18-1build1) ...
 78s Preparing to unpack .../08-libx11-data_2%3a1.8.12-1_all.deb ...
 78s Unpacking libx11-data (2:1.8.12-1) over (2:1.8.10-2) ...
 78s Preparing to unpack .../09-libx11-6_2%3a1.8.12-1_ppc64el.deb ...
 78s Unpacking libx11-6:ppc64el (2:1.8.12-1) over (2:1.8.10-2) ...
 78s Preparing to unpack .../10-numactl_2.0.19-1_ppc64el.deb ...
 78s Unpacking numactl (2.0.19-1) over (2.0.18-1build1) ...
 78s Preparing to unpack .../11-gnupg-l10n_2.4.4-2ubuntu24_all.deb ...
 78s Unpacking gnupg-l10n (2.4.4-2ubuntu24) over (2.4.4-2ubuntu23) ...
 78s Preparing to unpack .../12-libpython3.12t64_3.12.10-1_ppc64el.deb ...
 78s Unpacking libpython3.12t64:ppc64el (3.12.10-1) over (3.12.8-3) ...
 78s Preparing to unpack .../13-libpython3.12-stdlib_3.12.10-1_ppc64el.deb ...
 78s Unpacking libpython3.12-stdlib:ppc64el (3.12.10-1) over (3.12.8-3) ...
 78s Preparing to unpack .../14-libpython3.12-minimal_3.12.10-1_ppc64el.deb ...
 78s Unpacking libpython3.12-minimal:ppc64el (3.12.10-1) over (3.12.8-3) ...
 79s Preparing to unpack .../15-python3-wadllib_2.0.0-3_all.deb ...
 79s Unpacking python3-wadllib (2.0.0-3) over (2.0.0-2) ...
 79s Setting up openssh-client (1:9.9p1-3ubuntu3.1) ...
 79s Setting up libpython3.12-minimal:ppc64el (3.12.10-1) ...
 79s Setting up libglib2.0-0t64:ppc64el (2.84.1-2) ...
 79s No schema files found: doing nothing.
 79s Setting up libglib2.0-data (2.84.1-2) ...
 79s Setting up libx11-data (2:1.8.12-1) ...
 79s Setting up gnupg-l10n (2.4.4-2ubuntu24) ...
 79s Setting up python3-wadllib (2.0.0-3) ...
 79s Setting up dhcpcd-base (1:10.1.0-10) ...
 79s Installing new version of config file /etc/dhcpcd.conf ...
 79s Setting up gir1.2-glib-2.0:ppc64el (2.84.1-2) ...
 79s Setting up libnuma1:ppc64el (2.0.19-1) ...
 79s Setting up perl-modules-5.40 (5.40.1-3) ...
 79s Setting up groff-base (1.23.0-8) ...
 79s Setting up gpgconf (2.4.4-2ubuntu24) ...
 79s Setting up libx11-6:ppc64el (2:1.8.12-1) ...
 79s Setting up libxml2:ppc64el (2.12.7+dfsg+really2.9.14-0.4ubuntu0.1) ...
 79s Setting up gpg (2.4.4-2ubuntu24) ...
 79s Setting up gnupg-utils (2.4.4-2ubuntu24) ...
 79s Setting up openssh-sftp-server (1:9.9p1-3ubuntu3.1) ...
 79s Setting up python3-dbus (1.4.0-1) ...
 79s Setting up gpg-agent (2.4.4-2ubuntu24) ...
 79s Setting up libpython3.12-stdlib:ppc64el (3.12.10-1) ...
 79s Setting up numactl (2.0.19-1) ...
 79s Setting up openssh-server (1:9.9p1-3ubuntu3.1) ...
 81s Setting up gpgsm (2.4.4-2ubuntu24) ...
 81s Setting up libpython3.12t64:ppc64el (3.12.10-1) ...
 81s Setting up libperl5.40:ppc64el (5.40.1-3) ...
 81s Setting up dirmngr (2.4.4-2ubuntu24) ...
 81s Setting up perl (5.40.1-3) ...
 81s Setting up keyboxd (2.4.4-2ubuntu24) ...
 81s Setting up gnupg (2.4.4-2ubuntu24) ...
 81s Setting up gpg-wks-client (2.4.4-2ubuntu24) ...
 81s Processing triggers for ufw (0.36.2-9) ...
 81s Processing triggers for man-db (2.13.1-1) ...
 82s Processing triggers for install-info (7.1.1-1) ...
 82s Processing triggers for libc-bin (2.41-6ubuntu1) ...
 83s Reading package lists...
 83s Building dependency tree...
 83s Reading state information...
 83s Starting pkgProblemResolver with broken count: 0
 83s Starting 2 pkgProblemResolver with broken count: 0
 83s Done
 83s Solving dependencies...
 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 84s autopkgtest [12:45:46]: rebooting testbed after setup commands that affected boot
117s autopkgtest [12:46:17]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr  6 14:52:42 UTC 2025
119s autopkgtest [12:46:21]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-qusage
122s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (dsc) [2129 B]
122s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (tar) [10.1 MB]
122s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (diff) [3532 B]
122s gpgv: Signature made Sun Jan 12 02:53:53 2025 UTC
122s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
122s gpgv:                issuer "crusoe@debian.org"
122s gpgv: Can't check signature: No public key
122s dpkg-source: warning: cannot verify inline signature for ./r-bioc-qusage_2.40.0-2.dsc: no acceptable signature found
122s autopkgtest [12:46:24]: testing package r-bioc-qusage version 2.40.0-2
123s autopkgtest [12:46:25]: build not needed
132s autopkgtest [12:46:34]: test pkg-r-autopkgtest: preparing testbed
132s Reading package lists...
132s Building dependency tree...
132s Reading state information...
132s Starting pkgProblemResolver with broken count: 0
132s Starting 2 pkgProblemResolver with broken count: 0
132s Done
134s The following NEW packages will be installed:
134s   build-essential cpp cpp-14 cpp-14-powerpc64le-linux-gnu
134s   cpp-powerpc64le-linux-gnu dctrl-tools fontconfig fontconfig-config
134s   fonts-dejavu-core fonts-dejavu-mono g++ g++-14 g++-14-powerpc64le-linux-gnu
134s   g++-powerpc64le-linux-gnu gcc gcc-14 gcc-14-powerpc64le-linux-gnu
134s   gcc-powerpc64le-linux-gnu gfortran gfortran-14
134s   gfortran-14-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu
134s   icu-devtools libasan8 libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0
134s   libdatrie1 libdeflate-dev libdeflate0 libfftw3-double3 libfontconfig1
134s   libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3
134s   libharfbuzz0b libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
134s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
134s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev
134s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
134s   libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
134s   libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev
134s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
134s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
134s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf
134s   pkgconf-bin r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
134s   r-bioc-limma r-bioc-qusage r-cran-emmeans r-cran-estimability r-cran-fftw
134s   r-cran-lattice r-cran-mvtnorm r-cran-nlme r-cran-numderiv r-cran-statmod
134s   unzip x11-common xdg-utils zip zlib1g-dev
134s 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded.
134s Need to get 157 MB of archives.
134s After this operation, 468 MB of additional disk space will be used.
134s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el libisl23 ppc64el 0.27-1 [882 kB]
134s Get:2 http://ftpmaster.internal/ubuntu questing/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB]
134s Get:3 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu2 [10.5 MB]
134s Get:4 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-14 ppc64el 14.2.0-19ubuntu2 [1036 B]
134s Get:5 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B]
134s Get:6 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB]
134s Get:7 http://ftpmaster.internal/ubuntu questing/main ppc64el libcc1-0 ppc64el 15-20250404-0ubuntu1 [48.6 kB]
134s Get:8 http://ftpmaster.internal/ubuntu questing/main ppc64el libgomp1 ppc64el 15-20250404-0ubuntu1 [168 kB]
134s Get:9 http://ftpmaster.internal/ubuntu questing/main ppc64el libitm1 ppc64el 15-20250404-0ubuntu1 [32.3 kB]
134s Get:10 http://ftpmaster.internal/ubuntu questing/main ppc64el libasan8 ppc64el 15-20250404-0ubuntu1 [3007 kB]
135s Get:11 http://ftpmaster.internal/ubuntu questing/main ppc64el liblsan0 ppc64el 15-20250404-0ubuntu1 [1374 kB]
135s Get:12 http://ftpmaster.internal/ubuntu questing/main ppc64el libtsan2 ppc64el 15-20250404-0ubuntu1 [2732 kB]
135s Get:13 http://ftpmaster.internal/ubuntu questing/main ppc64el libubsan1 ppc64el 15-20250404-0ubuntu1 [1232 kB]
135s Get:14 http://ftpmaster.internal/ubuntu questing/main ppc64el libquadmath0 ppc64el 15-20250404-0ubuntu1 [160 kB]
135s Get:15 http://ftpmaster.internal/ubuntu questing/main ppc64el libgcc-14-dev ppc64el 14.2.0-19ubuntu2 [1618 kB]
135s Get:16 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu2 [20.6 MB]
137s Get:17 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-14 ppc64el 14.2.0-19ubuntu2 [540 kB]
137s Get:18 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B]
137s Get:19 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B]
137s Get:20 http://ftpmaster.internal/ubuntu questing/main ppc64el libstdc++-14-dev ppc64el 14.2.0-19ubuntu2 [2679 kB]
137s Get:21 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu2 [12.0 MB]
139s Get:22 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-14 ppc64el 14.2.0-19ubuntu2 [23.0 kB]
139s Get:23 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B]
139s Get:24 http://ftpmaster.internal/ubuntu questing/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B]
139s Get:25 http://ftpmaster.internal/ubuntu questing/main ppc64el build-essential ppc64el 12.12ubuntu1 [5094 B]
139s Get:26 http://ftpmaster.internal/ubuntu questing/main ppc64el dctrl-tools ppc64el 2.24-3build3 [109 kB]
139s Get:27 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
139s Get:28 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
139s Get:29 http://ftpmaster.internal/ubuntu questing/main ppc64el fontconfig-config ppc64el 2.15.0-2.2ubuntu1 [37.9 kB]
139s Get:30 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontconfig1 ppc64el 2.15.0-2.2ubuntu1 [187 kB]
139s Get:31 http://ftpmaster.internal/ubuntu questing/main ppc64el fontconfig ppc64el 2.15.0-2.2ubuntu1 [192 kB]
139s Get:32 http://ftpmaster.internal/ubuntu questing/main ppc64el libgfortran5 ppc64el 15-20250404-0ubuntu1 [615 kB]
139s Get:33 http://ftpmaster.internal/ubuntu questing/main ppc64el libgfortran-14-dev ppc64el 14.2.0-19ubuntu2 [620 kB]
139s Get:34 http://ftpmaster.internal/ubuntu questing/main ppc64el gfortran-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu2 [11.3 MB]
141s Get:35 http://ftpmaster.internal/ubuntu questing/main ppc64el gfortran-14 ppc64el 14.2.0-19ubuntu2 [14.2 kB]
141s Get:36 http://ftpmaster.internal/ubuntu questing/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1024 B]
141s Get:37 http://ftpmaster.internal/ubuntu questing/main ppc64el gfortran ppc64el 4:14.2.0-1ubuntu1 [1166 B]
141s Get:38 http://ftpmaster.internal/ubuntu questing/main ppc64el icu-devtools ppc64el 76.1-1ubuntu2 [251 kB]
141s Get:39 http://ftpmaster.internal/ubuntu questing/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB]
141s Get:40 http://ftpmaster.internal/ubuntu questing/main ppc64el libblas-dev ppc64el 3.12.1-2 [318 kB]
141s Get:41 http://ftpmaster.internal/ubuntu questing/main ppc64el libbz2-dev ppc64el 1.0.8-6 [50.2 kB]
141s Get:42 http://ftpmaster.internal/ubuntu questing/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
141s Get:43 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
141s Get:44 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
141s Get:45 http://ftpmaster.internal/ubuntu questing/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB]
141s Get:46 http://ftpmaster.internal/ubuntu questing/main ppc64el libcairo2 ppc64el 1.18.4-1 [746 kB]
141s Get:47 http://ftpmaster.internal/ubuntu questing/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB]
141s Get:48 http://ftpmaster.internal/ubuntu questing/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB]
141s Get:49 http://ftpmaster.internal/ubuntu questing/main ppc64el libdeflate-dev ppc64el 1.23-2 [70.6 kB]
141s Get:50 http://ftpmaster.internal/ubuntu questing/main ppc64el libfftw3-double3 ppc64el 3.3.10-2fakesync1build1 [443 kB]
141s Get:51 http://ftpmaster.internal/ubuntu questing/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
141s Get:52 http://ftpmaster.internal/ubuntu questing/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB]
141s Get:53 http://ftpmaster.internal/ubuntu questing/main ppc64el x11-common all 1:7.7+23ubuntu4 [21.8 kB]
141s Get:54 http://ftpmaster.internal/ubuntu questing/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB]
141s Get:55 http://ftpmaster.internal/ubuntu questing/main ppc64el libicu-dev ppc64el 76.1-1ubuntu2 [12.9 MB]
147s Get:56 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB]
149s Get:57 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-3ubuntu2 [358 kB]
149s Get:58 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
149s Get:59 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B]
149s Get:60 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B]
149s Get:61 http://ftpmaster.internal/ubuntu questing/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB]
151s Get:62 http://ftpmaster.internal/ubuntu questing/main ppc64el liblapack-dev ppc64el 3.12.1-2 [6076 kB]
157s Get:63 http://ftpmaster.internal/ubuntu questing/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB]
157s Get:64 http://ftpmaster.internal/ubuntu questing/main ppc64el libncurses-dev ppc64el 6.5+20250216-2 [484 kB]
158s Get:65 http://ftpmaster.internal/ubuntu questing/main ppc64el libthai-data all 0.1.29-2build1 [158 kB]
158s Get:66 http://ftpmaster.internal/ubuntu questing/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB]
158s Get:67 http://ftpmaster.internal/ubuntu questing/main ppc64el libpango-1.0-0 ppc64el 1.56.3-1 [278 kB]
158s Get:68 http://ftpmaster.internal/ubuntu questing/main ppc64el libpangoft2-1.0-0 ppc64el 1.56.3-1 [58.9 kB]
158s Get:69 http://ftpmaster.internal/ubuntu questing/main ppc64el libpangocairo-1.0-0 ppc64el 1.56.3-1 [30.7 kB]
158s Get:70 http://ftpmaster.internal/ubuntu questing/main ppc64el libpaper2 ppc64el 2.2.5-0.3 [18.0 kB]
158s Get:71 http://ftpmaster.internal/ubuntu questing/main ppc64el libpaper-utils ppc64el 2.2.5-0.3 [15.6 kB]
158s Get:72 http://ftpmaster.internal/ubuntu questing/main ppc64el libpcre2-16-0 ppc64el 10.45-1 [286 kB]
158s Get:73 http://ftpmaster.internal/ubuntu questing/main ppc64el libpcre2-32-0 ppc64el 10.45-1 [269 kB]
158s Get:74 http://ftpmaster.internal/ubuntu questing/main ppc64el libpcre2-posix3 ppc64el 10.45-1 [7390 B]
158s Get:75 http://ftpmaster.internal/ubuntu questing/main ppc64el libpcre2-dev ppc64el 10.45-1 [921 kB]
159s Get:76 http://ftpmaster.internal/ubuntu questing/main ppc64el libpkgconf3 ppc64el 1.8.1-4 [37.1 kB]
159s Get:77 http://ftpmaster.internal/ubuntu questing/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB]
160s Get:78 http://ftpmaster.internal/ubuntu questing/main ppc64el libpng-dev ppc64el 1.6.47-1.1 [323 kB]
160s Get:79 http://ftpmaster.internal/ubuntu questing/main ppc64el libreadline-dev ppc64el 8.2-6 [230 kB]
160s Get:80 http://ftpmaster.internal/ubuntu questing/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB]
160s Get:81 http://ftpmaster.internal/ubuntu questing/main ppc64el libsm6 ppc64el 2:1.2.6-1 [18.6 kB]
160s Get:82 http://ftpmaster.internal/ubuntu questing/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB]
161s Get:83 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
161s Get:84 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB]
161s Get:85 http://ftpmaster.internal/ubuntu questing/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu1 [283 kB]
161s Get:86 http://ftpmaster.internal/ubuntu questing/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB]
161s Get:87 http://ftpmaster.internal/ubuntu questing/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B]
161s Get:88 http://ftpmaster.internal/ubuntu questing/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB]
162s Get:89 http://ftpmaster.internal/ubuntu questing/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB]
162s Get:90 http://ftpmaster.internal/ubuntu questing/main ppc64el zip ppc64el 3.0-14ubuntu2 [196 kB]
162s Get:91 http://ftpmaster.internal/ubuntu questing/main ppc64el unzip ppc64el 6.0-28ubuntu6 [200 kB]
162s Get:92 http://ftpmaster.internal/ubuntu questing/main ppc64el xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
162s Get:93 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-base-core ppc64el 4.4.3-1 [29.0 MB]
182s Get:94 http://ftpmaster.internal/ubuntu questing/main ppc64el liblzma-dev ppc64el 5.6.4-1ubuntu1 [208 kB]
182s Get:95 http://ftpmaster.internal/ubuntu questing/main ppc64el pkgconf-bin ppc64el 1.8.1-4 [22.5 kB]
182s Get:96 http://ftpmaster.internal/ubuntu questing/main ppc64el pkgconf ppc64el 1.8.1-4 [16.7 kB]
182s Get:97 http://ftpmaster.internal/ubuntu questing/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1.3 [223 kB]
183s Get:98 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-base-dev all 4.4.3-1 [4176 B]
183s Get:99 http://ftpmaster.internal/ubuntu questing/universe ppc64el pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
183s Get:100 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-biocgenerics all 0.52.0-2 [624 kB]
183s Get:101 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-biobase ppc64el 2.66.0-2 [2341 kB]
184s Get:102 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-statmod ppc64el 1.5.0-1 [298 kB]
185s Get:103 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-limma ppc64el 3.62.2+dfsg-1 [1974 kB]
186s Get:104 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-lattice ppc64el 0.22-6-1 [1340 kB]
187s Get:105 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el r-cran-nlme ppc64el 3.1.168-1 [2327 kB]
187s Get:106 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-estimability all 1.5.1-1 [50.9 kB]
187s Get:107 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-numderiv all 2016.8-1.1-3 [115 kB]
187s Get:108 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-mvtnorm ppc64el 1.3-3-1 [927 kB]
187s Get:109 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-emmeans all 1.10.7+dfsg-1 [1665 kB]
188s Get:110 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-fftw ppc64el 1.0-9-1 [20.4 kB]
188s Get:111 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-qusage all 2.40.0-2 [10.2 MB]
191s Preconfiguring packages ...
191s Fetched 157 MB in 58s (2724 kB/s)
191s Selecting previously unselected package libisl23:ppc64el.
191s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
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(Reading database ... 60%
(Reading database ... 65%
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 107214 files and directories currently installed.)
191s Preparing to unpack .../000-libisl23_0.27-1_ppc64el.deb ...
191s Unpacking libisl23:ppc64el (0.27-1) ...
191s Selecting previously unselected package libmpc3:ppc64el.
191s Preparing to unpack .../001-libmpc3_1.3.1-1build2_ppc64el.deb ...
191s Unpacking libmpc3:ppc64el (1.3.1-1build2) ...
191s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu.
191s Preparing to unpack .../002-cpp-14-powerpc64le-linux-gnu_14.2.0-19ubuntu2_ppc64el.deb ...
191s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
191s Selecting previously unselected package cpp-14.
191s Preparing to unpack .../003-cpp-14_14.2.0-19ubuntu2_ppc64el.deb ...
191s Unpacking cpp-14 (14.2.0-19ubuntu2) ...
191s Selecting previously unselected package cpp-powerpc64le-linux-gnu.
191s Preparing to unpack .../004-cpp-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
191s Unpacking cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
191s Selecting previously unselected package cpp.
191s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
191s Unpacking cpp (4:14.2.0-1ubuntu1) ...
191s Selecting previously unselected package libcc1-0:ppc64el.
191s Preparing to unpack .../006-libcc1-0_15-20250404-0ubuntu1_ppc64el.deb ...
191s Unpacking libcc1-0:ppc64el (15-20250404-0ubuntu1) ...
191s Selecting previously unselected package libgomp1:ppc64el.
191s Preparing to unpack .../007-libgomp1_15-20250404-0ubuntu1_ppc64el.deb ...
191s Unpacking libgomp1:ppc64el (15-20250404-0ubuntu1) ...
191s Selecting previously unselected package libitm1:ppc64el.
191s Preparing to unpack .../008-libitm1_15-20250404-0ubuntu1_ppc64el.deb ...
191s Unpacking libitm1:ppc64el (15-20250404-0ubuntu1) ...
191s Selecting previously unselected package libasan8:ppc64el.
191s Preparing to unpack .../009-libasan8_15-20250404-0ubuntu1_ppc64el.deb ...
191s Unpacking libasan8:ppc64el (15-20250404-0ubuntu1) ...
191s Selecting previously unselected package liblsan0:ppc64el.
191s Preparing to unpack .../010-liblsan0_15-20250404-0ubuntu1_ppc64el.deb ...
191s Unpacking liblsan0:ppc64el (15-20250404-0ubuntu1) ...
191s Selecting previously unselected package libtsan2:ppc64el.
191s Preparing to unpack .../011-libtsan2_15-20250404-0ubuntu1_ppc64el.deb ...
191s Unpacking libtsan2:ppc64el (15-20250404-0ubuntu1) ...
191s Selecting previously unselected package libubsan1:ppc64el.
191s Preparing to unpack .../012-libubsan1_15-20250404-0ubuntu1_ppc64el.deb ...
191s Unpacking libubsan1:ppc64el (15-20250404-0ubuntu1) ...
191s Selecting previously unselected package libquadmath0:ppc64el.
191s Preparing to unpack .../013-libquadmath0_15-20250404-0ubuntu1_ppc64el.deb ...
191s Unpacking libquadmath0:ppc64el (15-20250404-0ubuntu1) ...
191s Selecting previously unselected package libgcc-14-dev:ppc64el.
191s Preparing to unpack .../014-libgcc-14-dev_14.2.0-19ubuntu2_ppc64el.deb ...
191s Unpacking libgcc-14-dev:ppc64el (14.2.0-19ubuntu2) ...
191s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu.
191s Preparing to unpack .../015-gcc-14-powerpc64le-linux-gnu_14.2.0-19ubuntu2_ppc64el.deb ...
191s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
192s Selecting previously unselected package gcc-14.
192s Preparing to unpack .../016-gcc-14_14.2.0-19ubuntu2_ppc64el.deb ...
192s Unpacking gcc-14 (14.2.0-19ubuntu2) ...
192s Selecting previously unselected package gcc-powerpc64le-linux-gnu.
192s Preparing to unpack .../017-gcc-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
192s Unpacking gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
192s Selecting previously unselected package gcc.
192s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
192s Unpacking gcc (4:14.2.0-1ubuntu1) ...
192s Selecting previously unselected package libstdc++-14-dev:ppc64el.
192s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-19ubuntu2_ppc64el.deb ...
192s Unpacking libstdc++-14-dev:ppc64el (14.2.0-19ubuntu2) ...
192s Selecting previously unselected package g++-14-powerpc64le-linux-gnu.
192s Preparing to unpack .../020-g++-14-powerpc64le-linux-gnu_14.2.0-19ubuntu2_ppc64el.deb ...
192s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
192s Selecting previously unselected package g++-14.
192s Preparing to unpack .../021-g++-14_14.2.0-19ubuntu2_ppc64el.deb ...
192s Unpacking g++-14 (14.2.0-19ubuntu2) ...
192s Selecting previously unselected package g++-powerpc64le-linux-gnu.
192s Preparing to unpack .../022-g++-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
192s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
192s Selecting previously unselected package g++.
192s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
192s Unpacking g++ (4:14.2.0-1ubuntu1) ...
192s Selecting previously unselected package build-essential.
192s Preparing to unpack .../024-build-essential_12.12ubuntu1_ppc64el.deb ...
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192s Selecting previously unselected package dctrl-tools.
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192s Selecting previously unselected package fonts-dejavu-mono.
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192s Selecting previously unselected package fonts-dejavu-core.
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192s Unpacking fonts-dejavu-core (2.37-8) ...
192s Selecting previously unselected package fontconfig-config.
192s Preparing to unpack .../028-fontconfig-config_2.15.0-2.2ubuntu1_ppc64el.deb ...
192s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
192s Selecting previously unselected package libfontconfig1:ppc64el.
192s Preparing to unpack .../029-libfontconfig1_2.15.0-2.2ubuntu1_ppc64el.deb ...
192s Unpacking libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ...
192s Selecting previously unselected package fontconfig.
192s Preparing to unpack .../030-fontconfig_2.15.0-2.2ubuntu1_ppc64el.deb ...
192s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
192s Selecting previously unselected package libgfortran5:ppc64el.
192s Preparing to unpack .../031-libgfortran5_15-20250404-0ubuntu1_ppc64el.deb ...
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192s Selecting previously unselected package libgfortran-14-dev:ppc64el.
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192s Selecting previously unselected package gfortran-14-powerpc64le-linux-gnu.
192s Preparing to unpack .../033-gfortran-14-powerpc64le-linux-gnu_14.2.0-19ubuntu2_ppc64el.deb ...
192s Unpacking gfortran-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
193s Selecting previously unselected package gfortran-14.
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193s Selecting previously unselected package gfortran-powerpc64le-linux-gnu.
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193s Unpacking gfortran-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
193s Selecting previously unselected package gfortran.
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193s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
193s Selecting previously unselected package icu-devtools.
193s Preparing to unpack .../037-icu-devtools_76.1-1ubuntu2_ppc64el.deb ...
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193s Selecting previously unselected package libblas3:ppc64el.
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193s Selecting previously unselected package libpixman-1-0:ppc64el.
193s Preparing to unpack .../041-libpixman-1-0_0.44.0-3_ppc64el.deb ...
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193s Selecting previously unselected package libxcb-render0:ppc64el.
193s Preparing to unpack .../042-libxcb-render0_1.17.0-2_ppc64el.deb ...
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193s Selecting previously unselected package libxcb-shm0:ppc64el.
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193s Selecting previously unselected package libxrender1:ppc64el.
193s Preparing to unpack .../044-libxrender1_1%3a0.9.12-1_ppc64el.deb ...
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193s Selecting previously unselected package libcairo2:ppc64el.
193s Preparing to unpack .../045-libcairo2_1.18.4-1_ppc64el.deb ...
193s Unpacking libcairo2:ppc64el (1.18.4-1) ...
193s Selecting previously unselected package libdatrie1:ppc64el.
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193s Selecting previously unselected package libdeflate0:ppc64el.
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193s Selecting previously unselected package libfftw3-double3:ppc64el.
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193s Selecting previously unselected package libgraphite2-3:ppc64el.
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193s Selecting previously unselected package libharfbuzz0b:ppc64el.
193s Preparing to unpack .../051-libharfbuzz0b_10.2.0-1_ppc64el.deb ...
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193s Selecting previously unselected package x11-common.
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193s Selecting previously unselected package libice6:ppc64el.
193s Preparing to unpack .../053-libice6_2%3a1.1.1-1_ppc64el.deb ...
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193s Selecting previously unselected package libicu-dev:ppc64el.
193s Preparing to unpack .../054-libicu-dev_76.1-1ubuntu2_ppc64el.deb ...
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193s Selecting previously unselected package libjpeg-turbo8:ppc64el.
193s Preparing to unpack .../055-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ...
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193s Preparing to unpack .../056-libjpeg-turbo8-dev_2.1.5-3ubuntu2_ppc64el.deb ...
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193s Selecting previously unselected package libjpeg8:ppc64el.
193s Preparing to unpack .../057-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
193s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
193s Selecting previously unselected package libjpeg8-dev:ppc64el.
193s Preparing to unpack .../058-libjpeg8-dev_8c-2ubuntu11_ppc64el.deb ...
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193s Selecting previously unselected package libjpeg-dev:ppc64el.
193s Preparing to unpack .../059-libjpeg-dev_8c-2ubuntu11_ppc64el.deb ...
193s Unpacking libjpeg-dev:ppc64el (8c-2ubuntu11) ...
193s Selecting previously unselected package liblapack3:ppc64el.
193s Preparing to unpack .../060-liblapack3_3.12.1-2_ppc64el.deb ...
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193s Selecting previously unselected package liblapack-dev:ppc64el.
193s Preparing to unpack .../061-liblapack-dev_3.12.1-2_ppc64el.deb ...
193s Unpacking liblapack-dev:ppc64el (3.12.1-2) ...
194s Selecting previously unselected package liblerc4:ppc64el.
194s Preparing to unpack .../062-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ...
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194s Selecting previously unselected package libncurses-dev:ppc64el.
194s Preparing to unpack .../063-libncurses-dev_6.5+20250216-2_ppc64el.deb ...
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194s Selecting previously unselected package libthai-data.
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194s Selecting previously unselected package libthai0:ppc64el.
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194s Selecting previously unselected package libpango-1.0-0:ppc64el.
194s Preparing to unpack .../066-libpango-1.0-0_1.56.3-1_ppc64el.deb ...
194s Unpacking libpango-1.0-0:ppc64el (1.56.3-1) ...
194s Selecting previously unselected package libpangoft2-1.0-0:ppc64el.
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194s Selecting previously unselected package libpangocairo-1.0-0:ppc64el.
194s Preparing to unpack .../068-libpangocairo-1.0-0_1.56.3-1_ppc64el.deb ...
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194s Selecting previously unselected package libpaper2:ppc64el.
194s Preparing to unpack .../069-libpaper2_2.2.5-0.3_ppc64el.deb ...
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194s Selecting previously unselected package libpaper-utils.
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194s Selecting previously unselected package libpcre2-16-0:ppc64el.
194s Preparing to unpack .../071-libpcre2-16-0_10.45-1_ppc64el.deb ...
194s Unpacking libpcre2-16-0:ppc64el (10.45-1) ...
194s Selecting previously unselected package libpcre2-32-0:ppc64el.
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194s Selecting previously unselected package libpcre2-posix3:ppc64el.
194s Preparing to unpack .../073-libpcre2-posix3_10.45-1_ppc64el.deb ...
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194s Selecting previously unselected package libpcre2-dev:ppc64el.
194s Preparing to unpack .../074-libpcre2-dev_10.45-1_ppc64el.deb ...
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194s Selecting previously unselected package libpkgconf3:ppc64el.
194s Preparing to unpack .../075-libpkgconf3_1.8.1-4_ppc64el.deb ...
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194s Selecting previously unselected package zlib1g-dev:ppc64el.
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194s Selecting previously unselected package libpng-dev:ppc64el.
194s Preparing to unpack .../077-libpng-dev_1.6.47-1.1_ppc64el.deb ...
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194s Selecting previously unselected package libreadline-dev:ppc64el.
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194s Unpacking libreadline-dev:ppc64el (8.2-6) ...
194s Selecting previously unselected package libsharpyuv0:ppc64el.
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194s Selecting previously unselected package libsm6:ppc64el.
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194s Selecting previously unselected package libtcl8.6:ppc64el.
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194s Selecting previously unselected package libjbig0:ppc64el.
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194s Selecting previously unselected package libwebp7:ppc64el.
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194s Selecting previously unselected package libtiff6:ppc64el.
194s Preparing to unpack .../084-libtiff6_4.7.0-3ubuntu1_ppc64el.deb ...
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194s Selecting previously unselected package libxft2:ppc64el.
194s Preparing to unpack .../085-libxft2_2.3.6-1build1_ppc64el.deb ...
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194s Selecting previously unselected package libxss1:ppc64el.
194s Preparing to unpack .../086-libxss1_1%3a1.2.3-1build3_ppc64el.deb ...
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194s Selecting previously unselected package libtk8.6:ppc64el.
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195s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
195s Setting up libpixman-1-0:ppc64el (0.44.0-3) ...
195s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ...
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195s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
195s Setting up libxrender1:ppc64el (1:0.9.12-1) ...
195s Setting up libdatrie1:ppc64el (0.2.13-3build1) ...
195s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
195s Setting up unzip (6.0-28ubuntu6) ...
195s Setting up x11-common (1:7.7+23ubuntu4) ...
195s Setting up libdeflate0:ppc64el (1.23-2) ...
195s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
195s Setting up libreadline-dev:ppc64el (8.2-6) ...
195s Setting up libgomp1:ppc64el (15-20250404-0ubuntu1) ...
195s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ...
195s Setting up libpcre2-16-0:ppc64el (10.45-1) ...
195s Setting up zip (3.0-14ubuntu2) ...
195s Setting up libpcre2-32-0:ppc64el (10.45-1) ...
195s Setting up libblas3:ppc64el (3.12.1-2) ...
195s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
195s Setting up libtirpc-dev:ppc64el (1.3.4+ds-1.3) ...
195s Setting up libpkgconf3:ppc64el (1.8.1-4) ...
195s Setting up libquadmath0:ppc64el (15-20250404-0ubuntu1) ...
195s Setting up fonts-dejavu-mono (2.37-8) ...
195s Setting up libmpc3:ppc64el (1.3.1-1build2) ...
195s Setting up libtcl8.6:ppc64el (8.6.16+dfsg-1) ...
195s Setting up icu-devtools (76.1-1ubuntu2) ...
195s Setting up fonts-dejavu-core (2.37-8) ...
195s Setting up pkgconf-bin (1.8.1-4) ...
195s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
195s Setting up libfftw3-double3:ppc64el (3.3.10-2fakesync1build1) ...
195s Setting up libgfortran5:ppc64el (15-20250404-0ubuntu1) ...
195s Setting up libwebp7:ppc64el (1.5.0-0.1) ...
195s Setting up liblzma-dev:ppc64el (5.6.4-1ubuntu1) ...
195s Setting up libubsan1:ppc64el (15-20250404-0ubuntu1) ...
195s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
195s Setting up libpcre2-posix3:ppc64el (10.45-1) ...
195s Setting up libasan8:ppc64el (15-20250404-0ubuntu1) ...
195s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ...
195s Setting up libthai-data (0.1.29-2build1) ...
195s Setting up libxss1:ppc64el (1:1.2.3-1build3) ...
195s Setting up libpaper2:ppc64el (2.2.5-0.3) ...
196s Setting up libtsan2:ppc64el (15-20250404-0ubuntu1) ...
196s Setting up libisl23:ppc64el (0.27-1) ...
196s Setting up libdeflate-dev:ppc64el (1.23-2) ...
196s Setting up libicu-dev:ppc64el (76.1-1ubuntu2) ...
196s Setting up xdg-utils (1.2.1-2ubuntu1) ...
196s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
196s Setting up libcc1-0:ppc64el (15-20250404-0ubuntu1) ...
196s Setting up liblsan0:ppc64el (15-20250404-0ubuntu1) ...
196s Setting up libblas-dev:ppc64el (3.12.1-2) ...
196s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode
196s Setting up dctrl-tools (2.24-3build3) ...
196s Setting up libitm1:ppc64el (15-20250404-0ubuntu1) ...
196s Setting up libbz2-dev:ppc64el (1.0.8-6) ...
196s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
196s Setting up libice6:ppc64el (2:1.1.1-1) ...
196s Setting up libjpeg-turbo8-dev:ppc64el (2.1.5-3ubuntu2) ...
196s Setting up liblapack3:ppc64el (3.12.1-2) ...
196s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
196s Setting up libpcre2-dev:ppc64el (10.45-1) ...
196s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ...
196s Setting up libpng-dev:ppc64el (1.6.47-1.1) ...
196s Setting up libpaper-utils (2.2.5-0.3) ...
196s Setting up pkgconf:ppc64el (1.8.1-4) ...
196s Setting up libthai0:ppc64el (0.1.29-2build1) ...
196s Setting up liblapack-dev:ppc64el (3.12.1-2) ...
196s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode
196s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
196s Setting up cpp-14 (14.2.0-19ubuntu2) ...
196s Setting up libtiff6:ppc64el (4.7.0-3ubuntu1) ...
196s Setting up libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ...
196s Setting up libgcc-14-dev:ppc64el (14.2.0-19ubuntu2) ...
196s Setting up libjpeg8-dev:ppc64el (8c-2ubuntu11) ...
196s Setting up libstdc++-14-dev:ppc64el (14.2.0-19ubuntu2) ...
196s Setting up libsm6:ppc64el (2:1.2.6-1) ...
196s Setting up cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
196s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
196s Setting up libgfortran-14-dev:ppc64el (14.2.0-19ubuntu2) ...
196s Setting up fontconfig (2.15.0-2.2ubuntu1) ...
198s Regenerating fonts cache... done.
198s Setting up libxft2:ppc64el (2.3.6-1build1) ...
198s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
198s Setting up libtk8.6:ppc64el (8.6.16-1) ...
198s Setting up libpango-1.0-0:ppc64el (1.56.3-1) ...
198s Setting up libjpeg-dev:ppc64el (8c-2ubuntu11) ...
198s Setting up libcairo2:ppc64el (1.18.4-1) ...
198s Setting up gcc-14 (14.2.0-19ubuntu2) ...
198s Setting up gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
198s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
198s Setting up cpp (4:14.2.0-1ubuntu1) ...
198s Setting up g++-14 (14.2.0-19ubuntu2) ...
198s Setting up gfortran-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
198s Setting up libpangoft2-1.0-0:ppc64el (1.56.3-1) ...
198s Setting up gfortran-14 (14.2.0-19ubuntu2) ...
198s Setting up libpangocairo-1.0-0:ppc64el (1.56.3-1) ...
198s Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
198s Setting up gcc (4:14.2.0-1ubuntu1) ...
198s Setting up gfortran-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
198s Setting up r-base-core (4.4.3-1) ...
198s Creating config file /etc/R/Renviron with new version
198s Setting up r-cran-lattice (0.22-6-1) ...
198s Setting up r-cran-nlme (3.1.168-1) ...
198s Setting up g++ (4:14.2.0-1ubuntu1) ...
198s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
198s Setting up r-cran-statmod (1.5.0-1) ...
198s Setting up build-essential (12.12ubuntu1) ...
198s Setting up r-cran-fftw (1.0-9-1) ...
198s Setting up r-cran-numderiv (2016.8-1.1-3) ...
198s Setting up r-cran-estimability (1.5.1-1) ...
198s Setting up r-bioc-biocgenerics (0.52.0-2) ...
198s Setting up gfortran (4:14.2.0-1ubuntu1) ...
198s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
198s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
198s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
198s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
198s Setting up r-bioc-biobase (2.66.0-2) ...
198s Setting up r-cran-mvtnorm (1.3-3-1) ...
198s Setting up r-bioc-limma (3.62.2+dfsg-1) ...
198s Setting up r-base-dev (4.4.3-1) ...
198s Setting up r-cran-emmeans (1.10.7+dfsg-1) ...
198s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
198s Setting up r-bioc-qusage (2.40.0-2) ...
198s Processing triggers for man-db (2.13.1-1) ...
200s Processing triggers for install-info (7.1.1-1) ...
200s Processing triggers for libc-bin (2.41-6ubuntu1) ...
201s autopkgtest [12:47:43]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
201s autopkgtest [12:47:43]: test pkg-r-autopkgtest: [-----------------------
201s Test: Try to load the R library qusage
201s 
201s R version 4.4.3 (2025-02-28) -- "Trophy Case"
201s Copyright (C) 2025 The R Foundation for Statistical Computing
201s Platform: powerpc64le-unknown-linux-gnu
201s 
201s R is free software and comes with ABSOLUTELY NO WARRANTY.
201s You are welcome to redistribute it under certain conditions.
201s Type 'license()' or 'licence()' for distribution details.
201s 
201s R is a collaborative project with many contributors.
201s Type 'contributors()' for more information and
201s 'citation()' on how to cite R or R packages in publications.
201s 
201s Type 'demo()' for some demos, 'help()' for on-line help, or
201s 'help.start()' for an HTML browser interface to help.
201s Type 'q()' to quit R.
201s 
201s > library('qusage')
201s Loading required package: limma
202s Error: package or namespace load failed for ‘qusage’ in dyn.load(file, DLLpath = DLLpath, ...):
202s  unable to load shared object '/usr/lib/R/library/nlme/libs/nlme.so':
202s   /usr/lib/R/library/nlme/libs/nlme.so: undefined symbol: R_chk_memcpy
202s Execution halted
202s autopkgtest [12:47:44]: test pkg-r-autopkgtest: -----------------------]
203s autopkgtest [12:47:45]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
203s pkg-r-autopkgtest    FAIL non-zero exit status 1
203s autopkgtest [12:47:45]: @@@@@@@@@@@@@@@@@@@@ summary
203s pkg-r-autopkgtest    FAIL non-zero exit status 1
208s nova [W] Using flock in prodstack6-ppc64el
208s Creating nova instance adt-questing-ppc64el-r-bioc-qusage-20250506-114536-juju-7f2275-prod-proposed-migration-environment-20-d349a8e3-2ed4-40e2-9e59-e15fa293e018 from image adt/ubuntu-questing-ppc64el-server-20250505.img (UUID 5eb71ea2-eb0e-41c3-98a9-f40539045bc8)...
208s nova [W] Timed out waiting for 7c11d98e-09a1-4440-864d-3cad41ecb439 to get deleted.