0s autopkgtest [12:41:21]: starting date and time: 2025-05-04 12:41:21+0000
  0s autopkgtest [12:41:21]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [12:41:21]: host juju-7f2275-prod-proposed-migration-environment-21; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.l_pasobb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck --apt-upgrade r-bioc-pwalign --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-21@bos03-ppc64el-11.secgroup --name adt-questing-ppc64el-r-bioc-pwalign-20250504-124121-juju-7f2275-prod-proposed-migration-environment-21-b7f45994-8439-47c7-bda3-0976ca21c967 --image adt/ubuntu-questing-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-21 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
 81s autopkgtest [12:42:42]: testbed dpkg architecture: ppc64el
 82s autopkgtest [12:42:43]: testbed apt version: 3.0.0
 82s autopkgtest [12:42:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 82s autopkgtest [12:42:43]: testbed release detected to be: None
 83s autopkgtest [12:42:44]: updating testbed package index (apt update)
 83s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
 83s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
 83s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
 84s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
 84s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.3 kB]
 84s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [124 kB]
 84s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1184 kB]
 84s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el Packages [167 kB]
 84s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el Packages [1168 kB]
 84s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse ppc64el Packages [31.7 kB]
 84s Fetched 2818 kB in 1s (2417 kB/s)
 85s Reading package lists...
 86s autopkgtest [12:42:47]: upgrading testbed (apt dist-upgrade and autopurge)
 86s Reading package lists...
 86s Building dependency tree...
 86s Reading state information...
 86s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 86s Starting 2 pkgProblemResolver with broken count: 0
 86s Done
 87s Entering ResolveByKeep
 87s 
 87s Calculating upgrade...
 87s The following packages will be upgraded:
 87s   libmm-glib0 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
 87s   publicsuffix
 87s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 87s Need to get 5929 kB of archives.
 87s After this operation, 150 kB disk space will be freed.
 87s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el publicsuffix all 20250328.1952-0.1 [135 kB]
 87s Get:2 http://ftpmaster.internal/ubuntu questing/main ppc64el libmm-glib0 ppc64el 1.24.0-1 [290 kB]
 87s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el libpython3.12t64 ppc64el 3.12.10-1 [2558 kB]
 88s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el libpython3.12-stdlib ppc64el 3.12.10-1 [2105 kB]
 88s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el libpython3.12-minimal ppc64el 3.12.10-1 [841 kB]
 88s Fetched 5929 kB in 1s (7822 kB/s)
 88s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 107204 files and directories currently installed.)
 88s Preparing to unpack .../publicsuffix_20250328.1952-0.1_all.deb ...
 88s Unpacking publicsuffix (20250328.1952-0.1) over (20250108.1153-0.1) ...
 88s Preparing to unpack .../libmm-glib0_1.24.0-1_ppc64el.deb ...
 88s Unpacking libmm-glib0:ppc64el (1.24.0-1) over (1.23.4-0ubuntu3) ...
 88s Preparing to unpack .../libpython3.12t64_3.12.10-1_ppc64el.deb ...
 88s Unpacking libpython3.12t64:ppc64el (3.12.10-1) over (3.12.8-3) ...
 88s Preparing to unpack .../libpython3.12-stdlib_3.12.10-1_ppc64el.deb ...
 89s Unpacking libpython3.12-stdlib:ppc64el (3.12.10-1) over (3.12.8-3) ...
 89s Preparing to unpack .../libpython3.12-minimal_3.12.10-1_ppc64el.deb ...
 89s Unpacking libpython3.12-minimal:ppc64el (3.12.10-1) over (3.12.8-3) ...
 89s Setting up libpython3.12-minimal:ppc64el (3.12.10-1) ...
 89s Setting up libmm-glib0:ppc64el (1.24.0-1) ...
 89s Setting up publicsuffix (20250328.1952-0.1) ...
 89s Setting up libpython3.12-stdlib:ppc64el (3.12.10-1) ...
 89s Setting up libpython3.12t64:ppc64el (3.12.10-1) ...
 89s Processing triggers for libc-bin (2.41-6ubuntu1) ...
 89s Reading package lists...
 89s Building dependency tree...
 89s Reading state information...
 90s Starting pkgProblemResolver with broken count: 0
 90s Starting 2 pkgProblemResolver with broken count: 0
 90s Done
 90s Solving dependencies...
 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 92s autopkgtest [12:42:53]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr  6 14:52:42 UTC 2025
 92s autopkgtest [12:42:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-pwalign
 94s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-pwalign 1.2.0-2 (dsc) [2182 B]
 94s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-pwalign 1.2.0-2 (tar) [327 kB]
 94s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-pwalign 1.2.0-2 (diff) [5492 B]
 94s gpgv: Signature made Sun Jan 12 19:21:49 2025 UTC
 94s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
 94s gpgv:                issuer "crusoe@debian.org"
 94s gpgv: Can't check signature: No public key
 94s dpkg-source: warning: cannot verify inline signature for ./r-bioc-pwalign_1.2.0-2.dsc: no acceptable signature found
 94s autopkgtest [12:42:55]: testing package r-bioc-pwalign version 1.2.0-2
 95s autopkgtest [12:42:56]: build not needed
 96s autopkgtest [12:42:57]: test pkg-r-autopkgtest: preparing testbed
 96s Reading package lists...
 96s Building dependency tree...
 96s Reading state information...
 96s Starting pkgProblemResolver with broken count: 5
 96s Starting 2 pkgProblemResolver with broken count: 5
 96s Investigating (0) r-base-core:ppc64el < none -> 4.5.0-3 @un puN Ib >
 96s Broken r-base-core:ppc64el Breaks on r-bioc-pwalign:ppc64el < none -> 1.2.0-2 @un puN Ib > (< 1.2.0-3~)
 96s   Considering r-bioc-pwalign:ppc64el -1 as a solution to r-base-core:ppc64el 20
 96s Investigating (0) r-bioc-xvector:ppc64el < none -> 0.46.0-2 @un puN Ib >
 96s Broken r-bioc-xvector:ppc64el Depends on r-bioc-iranges:ppc64el < none @un pH > (>= 2.23.9)
 96s   Considering r-bioc-iranges:ppc64el 1 as a solution to r-bioc-xvector:ppc64el 1
 96s   Considering r-bioc-iranges:ppc64el 1 as a solution to r-bioc-xvector:ppc64el 1
 96s Investigating (0) r-bioc-genomeinfodb:ppc64el < none -> 1.42.3+dfsg-1 @un puN Ib >
 96s Broken r-bioc-genomeinfodb:ppc64el Depends on r-bioc-iranges:ppc64el < none @un pH > (>= 2.13.12)
 96s   Considering r-bioc-iranges:ppc64el 1 as a solution to r-bioc-genomeinfodb:ppc64el 0
 96s   Considering r-bioc-iranges:ppc64el 1 as a solution to r-bioc-genomeinfodb:ppc64el 0
 96s Investigating (0) r-bioc-biostrings:ppc64el < none -> 2.74.1+dfsg-2 @un puN Ib >
 96s Broken r-bioc-biostrings:ppc64el Depends on r-bioc-iranges:ppc64el < none @un pH > (>= 2.31.2)
 96s   Considering r-bioc-iranges:ppc64el 1 as a solution to r-bioc-biostrings:ppc64el 0
 96s   Considering r-bioc-iranges:ppc64el 1 as a solution to r-bioc-biostrings:ppc64el 0
 96s Investigating (0) r-bioc-pwalign:ppc64el < none -> 1.2.0-2 @un puN Ib >
 96s Broken r-bioc-pwalign:ppc64el Depends on r-bioc-iranges:ppc64el < none @un pH >
 96s   Considering r-bioc-iranges:ppc64el 1 as a solution to r-bioc-pwalign:ppc64el -1
 96s   Considering r-bioc-iranges:ppc64el 1 as a solution to r-bioc-pwalign:ppc64el -1
 96s Done
 96s Some packages could not be installed. This may mean that you have
 96s requested an impossible situation or if you are using the unstable
 96s distribution that some required packages have not yet been created
 96s or been moved out of Incoming.
 96s The following information may help to resolve the situation:
 96s 
 96s The following packages have unmet dependencies:
 96s  r-base-core : Breaks: r-bioc-pwalign (< 1.2.0-3~) but 1.2.0-2 is to be installed
 96s  r-bioc-biostrings : Depends: r-bioc-iranges (>= 2.31.2) but it is not installable
 96s  r-bioc-genomeinfodb : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable
 96s  r-bioc-pwalign : Depends: r-bioc-iranges but it is not installable
 96s  r-bioc-xvector : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
 96s E: Unable to correct problems, you have held broken packages.
 96s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed
 97s Reading package lists...
 97s Building dependency tree...
 97s Reading state information...
 97s Starting pkgProblemResolver with broken count: 0
 97s Starting 2 pkgProblemResolver with broken count: 0
 97s Done
 97s The following NEW packages will be installed:
 97s   build-essential cpp cpp-14 cpp-14-powerpc64le-linux-gnu
 97s   cpp-powerpc64le-linux-gnu dctrl-tools fontconfig fontconfig-config
 97s   fonts-dejavu-core fonts-dejavu-mono g++ g++-14 g++-14-powerpc64le-linux-gnu
 97s   g++-powerpc64le-linux-gnu gcc gcc-14 gcc-14-powerpc64le-linux-gnu
 97s   gcc-powerpc64le-linux-gnu gfortran gfortran-14
 97s   gfortran-14-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu
 97s   icu-devtools libasan8 libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0
 97s   libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev
 97s   libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
 97s   libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
 97s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
 97s   liblsan0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0
 97s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
 97s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
 97s   libpng-dev libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev
 97s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
 97s   libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1
 97s   libxt6t64 libzstd-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core
 97s   r-base-dev r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb
 97s   r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-pwalign r-bioc-s4vectors
 97s   r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass
 97s   r-cran-crayon r-cran-curl r-cran-httr r-cran-jsonlite r-cran-mime
 97s   r-cran-openssl r-cran-r6 r-cran-runit r-cran-sys unzip x11-common xdg-utils
 97s   zip zlib1g-dev
 97s The following packages will be upgraded:
 97s   gcc-14-base gcc-15-base libatomic1 libgcc-s1 liblzma5 libstdc++6
 97s   libtirpc-common libtirpc3t64 libzstd1 xz-utils zstd
 98s 11 upgraded, 119 newly installed, 0 to remove and 97 not upgraded.
 98s Need to get 178 MB of archives.
 98s After this operation, 492 MB of additional disk space will be used.
 98s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el gcc-15-base ppc64el 15.1.0-2ubuntu1 [54.7 kB]
 98s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libgcc-s1 ppc64el 15.1.0-2ubuntu1 [40.1 kB]
 98s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libatomic1 ppc64el 15.1.0-2ubuntu1 [11.0 kB]
 98s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libstdc++6 ppc64el 15.1.0-2ubuntu1 [920 kB]
 98s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el liblzma5 ppc64el 5.8.1-1 [176 kB]
 98s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libzstd1 ppc64el 1.5.7+dfsg-1 [410 kB]
 98s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el gcc-14-base ppc64el 14.2.0-23ubuntu1 [55.3 kB]
 98s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libtirpc-common all 1.3.6+ds-1 [8198 B]
 98s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libtirpc3t64 ppc64el 1.3.6+ds-1 [101 kB]
 98s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el xz-utils ppc64el 5.8.1-1 [357 kB]
 98s Get:11 http://ftpmaster.internal/ubuntu questing/main ppc64el libisl23 ppc64el 0.27-1 [882 kB]
 98s Get:12 http://ftpmaster.internal/ubuntu questing/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB]
 98s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-23ubuntu1 [10.5 MB]
 98s Get:14 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el cpp-14 ppc64el 14.2.0-23ubuntu1 [1036 B]
 98s Get:15 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B]
 98s Get:16 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB]
 98s Get:17 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libcc1-0 ppc64el 15.1.0-2ubuntu1 [48.8 kB]
 98s Get:18 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libgomp1 ppc64el 15.1.0-2ubuntu1 [169 kB]
 98s Get:19 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libitm1 ppc64el 15.1.0-2ubuntu1 [32.3 kB]
 98s Get:20 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libasan8 ppc64el 15.1.0-2ubuntu1 [3006 kB]
 98s Get:21 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el liblsan0 ppc64el 15.1.0-2ubuntu1 [1374 kB]
 99s Get:22 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libtsan2 ppc64el 15.1.0-2ubuntu1 [2728 kB]
 99s Get:23 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libubsan1 ppc64el 15.1.0-2ubuntu1 [1231 kB]
 99s Get:24 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libquadmath0 ppc64el 15.1.0-2ubuntu1 [159 kB]
 99s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libgcc-14-dev ppc64el 14.2.0-23ubuntu1 [1616 kB]
 99s Get:26 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-23ubuntu1 [20.6 MB]
 99s Get:27 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el gcc-14 ppc64el 14.2.0-23ubuntu1 [547 kB]
 99s Get:28 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B]
 99s Get:29 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B]
 99s Get:30 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libstdc++-14-dev ppc64el 14.2.0-23ubuntu1 [3024 kB]
 99s Get:31 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-23ubuntu1 [12.0 MB]
100s Get:32 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el g++-14 ppc64el 14.2.0-23ubuntu1 [24.0 kB]
100s Get:33 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B]
100s Get:34 http://ftpmaster.internal/ubuntu questing/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B]
100s Get:35 http://ftpmaster.internal/ubuntu questing/main ppc64el build-essential ppc64el 12.12ubuntu1 [5094 B]
100s Get:36 http://ftpmaster.internal/ubuntu questing/main ppc64el dctrl-tools ppc64el 2.24-3build3 [109 kB]
100s Get:37 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
100s Get:38 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
100s Get:39 http://ftpmaster.internal/ubuntu questing/main ppc64el fontconfig-config ppc64el 2.15.0-2.2ubuntu1 [37.9 kB]
100s Get:40 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontconfig1 ppc64el 2.15.0-2.2ubuntu1 [187 kB]
100s Get:41 http://ftpmaster.internal/ubuntu questing/main ppc64el fontconfig ppc64el 2.15.0-2.2ubuntu1 [192 kB]
100s Get:42 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libgfortran5 ppc64el 15.1.0-2ubuntu1 [614 kB]
100s Get:43 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libgfortran-14-dev ppc64el 14.2.0-23ubuntu1 [619 kB]
100s Get:44 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el gfortran-14-powerpc64le-linux-gnu ppc64el 14.2.0-23ubuntu1 [11.3 MB]
100s Get:45 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el gfortran-14 ppc64el 14.2.0-23ubuntu1 [14.4 kB]
100s Get:46 http://ftpmaster.internal/ubuntu questing/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1024 B]
100s Get:47 http://ftpmaster.internal/ubuntu questing/main ppc64el gfortran ppc64el 4:14.2.0-1ubuntu1 [1166 B]
100s Get:48 http://ftpmaster.internal/ubuntu questing/main ppc64el icu-devtools ppc64el 76.1-1ubuntu2 [251 kB]
100s Get:49 http://ftpmaster.internal/ubuntu questing/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB]
100s Get:50 http://ftpmaster.internal/ubuntu questing/main ppc64el libblas-dev ppc64el 3.12.1-2 [318 kB]
100s Get:51 http://ftpmaster.internal/ubuntu questing/main ppc64el libbz2-dev ppc64el 1.0.8-6 [50.2 kB]
100s Get:52 http://ftpmaster.internal/ubuntu questing/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
100s Get:53 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
100s Get:54 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
100s Get:55 http://ftpmaster.internal/ubuntu questing/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
100s Get:56 http://ftpmaster.internal/ubuntu questing/main ppc64el libcairo2 ppc64el 1.18.4-1 [746 kB]
100s Get:57 http://ftpmaster.internal/ubuntu questing/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB]
100s Get:58 http://ftpmaster.internal/ubuntu questing/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB]
100s Get:59 http://ftpmaster.internal/ubuntu questing/main ppc64el libdeflate-dev ppc64el 1.23-2 [70.6 kB]
100s Get:60 http://ftpmaster.internal/ubuntu questing/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
100s Get:61 http://ftpmaster.internal/ubuntu questing/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB]
100s Get:62 http://ftpmaster.internal/ubuntu questing/main ppc64el x11-common all 1:7.7+23ubuntu4 [21.8 kB]
100s Get:63 http://ftpmaster.internal/ubuntu questing/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB]
100s Get:64 http://ftpmaster.internal/ubuntu questing/main ppc64el libicu-dev ppc64el 76.1-1ubuntu2 [12.9 MB]
100s Get:65 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB]
100s Get:66 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-3ubuntu2 [358 kB]
100s Get:67 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
100s Get:68 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B]
100s Get:69 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B]
100s Get:70 http://ftpmaster.internal/ubuntu questing/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB]
100s Get:71 http://ftpmaster.internal/ubuntu questing/main ppc64el liblapack-dev ppc64el 3.12.1-2 [6076 kB]
101s Get:72 http://ftpmaster.internal/ubuntu questing/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB]
101s Get:73 http://ftpmaster.internal/ubuntu questing/main ppc64el libncurses-dev ppc64el 6.5+20250216-2 [484 kB]
101s Get:74 http://ftpmaster.internal/ubuntu questing/main ppc64el libthai-data all 0.1.29-2build1 [158 kB]
101s Get:75 http://ftpmaster.internal/ubuntu questing/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB]
101s Get:76 http://ftpmaster.internal/ubuntu questing/main ppc64el libpango-1.0-0 ppc64el 1.56.3-1 [278 kB]
101s Get:77 http://ftpmaster.internal/ubuntu questing/main ppc64el libpangoft2-1.0-0 ppc64el 1.56.3-1 [58.9 kB]
101s Get:78 http://ftpmaster.internal/ubuntu questing/main ppc64el libpangocairo-1.0-0 ppc64el 1.56.3-1 [30.7 kB]
101s Get:79 http://ftpmaster.internal/ubuntu questing/main ppc64el libpaper2 ppc64el 2.2.5-0.3 [18.0 kB]
101s Get:80 http://ftpmaster.internal/ubuntu questing/main ppc64el libpaper-utils ppc64el 2.2.5-0.3 [15.6 kB]
101s Get:81 http://ftpmaster.internal/ubuntu questing/main ppc64el libpcre2-16-0 ppc64el 10.45-1 [286 kB]
101s Get:82 http://ftpmaster.internal/ubuntu questing/main ppc64el libpcre2-32-0 ppc64el 10.45-1 [269 kB]
101s Get:83 http://ftpmaster.internal/ubuntu questing/main ppc64el libpcre2-posix3 ppc64el 10.45-1 [7390 B]
101s Get:84 http://ftpmaster.internal/ubuntu questing/main ppc64el libpcre2-dev ppc64el 10.45-1 [921 kB]
101s Get:85 http://ftpmaster.internal/ubuntu questing/main ppc64el libpkgconf3 ppc64el 1.8.1-4 [37.1 kB]
101s Get:86 http://ftpmaster.internal/ubuntu questing/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB]
101s Get:87 http://ftpmaster.internal/ubuntu questing/main ppc64el libpng-dev ppc64el 1.6.47-1.1 [323 kB]
101s Get:88 http://ftpmaster.internal/ubuntu questing/main ppc64el libreadline-dev ppc64el 8.2-6 [230 kB]
101s Get:89 http://ftpmaster.internal/ubuntu questing/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB]
101s Get:90 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libsm6 ppc64el 2:1.2.6-1 [18.6 kB]
101s Get:91 http://ftpmaster.internal/ubuntu questing/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB]
101s Get:92 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
101s Get:93 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB]
101s Get:94 http://ftpmaster.internal/ubuntu questing/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu1 [283 kB]
101s Get:95 http://ftpmaster.internal/ubuntu questing/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB]
101s Get:96 http://ftpmaster.internal/ubuntu questing/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B]
101s Get:97 http://ftpmaster.internal/ubuntu questing/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB]
101s Get:98 http://ftpmaster.internal/ubuntu questing/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB]
101s Get:99 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libzstd-dev ppc64el 1.5.7+dfsg-1 [514 kB]
101s Get:100 http://ftpmaster.internal/ubuntu questing/main ppc64el zip ppc64el 3.0-14ubuntu2 [196 kB]
101s Get:101 http://ftpmaster.internal/ubuntu questing/main ppc64el unzip ppc64el 6.0-28ubuntu6 [200 kB]
101s Get:102 http://ftpmaster.internal/ubuntu questing/main ppc64el xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
101s Get:103 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el r-base-core ppc64el 4.5.0-3 [29.3 MB]
105s Get:104 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el liblzma-dev ppc64el 5.8.1-1 [208 kB]
105s Get:105 http://ftpmaster.internal/ubuntu questing/main ppc64el pkgconf-bin ppc64el 1.8.1-4 [22.5 kB]
105s Get:106 http://ftpmaster.internal/ubuntu questing/main ppc64el pkgconf ppc64el 1.8.1-4 [16.7 kB]
105s Get:107 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libtirpc-dev ppc64el 1.3.6+ds-1 [223 kB]
105s Get:108 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el r-base-dev all 4.5.0-3 [4188 B]
105s Get:109 http://ftpmaster.internal/ubuntu questing/universe ppc64el pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
105s Get:110 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-biocgenerics all 0.52.0-2 [624 kB]
106s Get:111 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-s4vectors ppc64el 0.44.0+dfsg-2 [2078 kB]
106s Get:112 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el r-bioc-iranges ppc64el 2.40.1-3 [2309 kB]
106s Get:113 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
106s Get:114 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-xvector ppc64el 0.46.0-2 [629 kB]
106s Get:115 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-curl ppc64el 6.2.1+dfsg-1ubuntu1 [198 kB]
106s Get:116 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-jsonlite ppc64el 1.9.1+dfsg-1 [452 kB]
106s Get:117 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-mime ppc64el 0.12-2 [35.9 kB]
106s Get:118 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-sys ppc64el 3.4.3-1 [45.5 kB]
106s Get:119 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-askpass ppc64el 1.2.1-1 [24.9 kB]
106s Get:120 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-openssl ppc64el 2.3.2+dfsg-1 [409 kB]
106s Get:121 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-r6 all 2.6.1-1 [101 kB]
106s Get:122 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-httr all 1.4.7+dfsg-1 [459 kB]
106s Get:123 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
106s Get:124 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
108s Get:125 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
109s Get:126 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-crayon all 1.5.3-1 [165 kB]
109s Get:127 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-bioc-biostrings ppc64el 2.74.1+dfsg-2 [13.3 MB]
111s Get:128 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el r-bioc-pwalign ppc64el 1.2.0-3 [762 kB]
111s Get:129 http://ftpmaster.internal/ubuntu questing/universe ppc64el r-cran-runit all 0.4.33-1 [377 kB]
111s Get:130 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el zstd ppc64el 1.5.7+dfsg-1 [811 kB]
111s Preconfiguring packages ...
111s Fetched 178 MB in 13s (13.2 MB/s)
111s (Reading database ... 
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(Reading database ... 107204 files and directories currently installed.)
111s Preparing to unpack .../gcc-15-base_15.1.0-2ubuntu1_ppc64el.deb ...
111s Unpacking gcc-15-base:ppc64el (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ...
111s Setting up gcc-15-base:ppc64el (15.1.0-2ubuntu1) ...
112s (Reading database ... 
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(Reading database ... 107204 files and directories currently installed.)
112s Preparing to unpack .../libgcc-s1_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking libgcc-s1:ppc64el (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ...
112s Setting up libgcc-s1:ppc64el (15.1.0-2ubuntu1) ...
112s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 107204 files and directories currently installed.)
112s Preparing to unpack .../libatomic1_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking libatomic1:ppc64el (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ...
112s Preparing to unpack .../libstdc++6_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking libstdc++6:ppc64el (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ...
112s Setting up libstdc++6:ppc64el (15.1.0-2ubuntu1) ...
112s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 107204 files and directories currently installed.)
112s Preparing to unpack .../liblzma5_5.8.1-1_ppc64el.deb ...
112s Unpacking liblzma5:ppc64el (5.8.1-1) over (5.6.4-1ubuntu1) ...
112s Setting up liblzma5:ppc64el (5.8.1-1) ...
112s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 107204 files and directories currently installed.)
112s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_ppc64el.deb ...
112s Unpacking libzstd1:ppc64el (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ...
112s Setting up libzstd1:ppc64el (1.5.7+dfsg-1) ...
112s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 107204 files and directories currently installed.)
112s Preparing to unpack .../000-gcc-14-base_14.2.0-23ubuntu1_ppc64el.deb ...
112s Unpacking gcc-14-base:ppc64el (14.2.0-23ubuntu1) over (14.2.0-19ubuntu2) ...
112s Preparing to unpack .../001-libtirpc-common_1.3.6+ds-1_all.deb ...
112s Unpacking libtirpc-common (1.3.6+ds-1) over (1.3.4+ds-1.3) ...
112s Preparing to unpack .../002-libtirpc3t64_1.3.6+ds-1_ppc64el.deb ...
112s Unpacking libtirpc3t64:ppc64el (1.3.6+ds-1) over (1.3.4+ds-1.3) ...
112s Preparing to unpack .../003-xz-utils_5.8.1-1_ppc64el.deb ...
112s Unpacking xz-utils (5.8.1-1) over (5.6.4-1ubuntu1) ...
112s Selecting previously unselected package libisl23:ppc64el.
112s Preparing to unpack .../004-libisl23_0.27-1_ppc64el.deb ...
112s Unpacking libisl23:ppc64el (0.27-1) ...
112s Selecting previously unselected package libmpc3:ppc64el.
112s Preparing to unpack .../005-libmpc3_1.3.1-1build2_ppc64el.deb ...
112s Unpacking libmpc3:ppc64el (1.3.1-1build2) ...
112s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu.
112s Preparing to unpack .../006-cpp-14-powerpc64le-linux-gnu_14.2.0-23ubuntu1_ppc64el.deb ...
112s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-23ubuntu1) ...
112s Selecting previously unselected package cpp-14.
112s Preparing to unpack .../007-cpp-14_14.2.0-23ubuntu1_ppc64el.deb ...
112s Unpacking cpp-14 (14.2.0-23ubuntu1) ...
112s Selecting previously unselected package cpp-powerpc64le-linux-gnu.
112s Preparing to unpack .../008-cpp-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
112s Unpacking cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
112s Selecting previously unselected package cpp.
112s Preparing to unpack .../009-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
112s Unpacking cpp (4:14.2.0-1ubuntu1) ...
112s Selecting previously unselected package libcc1-0:ppc64el.
112s Preparing to unpack .../010-libcc1-0_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking libcc1-0:ppc64el (15.1.0-2ubuntu1) ...
112s Selecting previously unselected package libgomp1:ppc64el.
112s Preparing to unpack .../011-libgomp1_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking libgomp1:ppc64el (15.1.0-2ubuntu1) ...
112s Selecting previously unselected package libitm1:ppc64el.
112s Preparing to unpack .../012-libitm1_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking libitm1:ppc64el (15.1.0-2ubuntu1) ...
112s Selecting previously unselected package libasan8:ppc64el.
112s Preparing to unpack .../013-libasan8_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking libasan8:ppc64el (15.1.0-2ubuntu1) ...
112s Selecting previously unselected package liblsan0:ppc64el.
112s Preparing to unpack .../014-liblsan0_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking liblsan0:ppc64el (15.1.0-2ubuntu1) ...
112s Selecting previously unselected package libtsan2:ppc64el.
112s Preparing to unpack .../015-libtsan2_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking libtsan2:ppc64el (15.1.0-2ubuntu1) ...
112s Selecting previously unselected package libubsan1:ppc64el.
112s Preparing to unpack .../016-libubsan1_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking libubsan1:ppc64el (15.1.0-2ubuntu1) ...
112s Selecting previously unselected package libquadmath0:ppc64el.
112s Preparing to unpack .../017-libquadmath0_15.1.0-2ubuntu1_ppc64el.deb ...
112s Unpacking libquadmath0:ppc64el (15.1.0-2ubuntu1) ...
113s Selecting previously unselected package libgcc-14-dev:ppc64el.
113s Preparing to unpack .../018-libgcc-14-dev_14.2.0-23ubuntu1_ppc64el.deb ...
113s Unpacking libgcc-14-dev:ppc64el (14.2.0-23ubuntu1) ...
113s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu.
113s Preparing to unpack .../019-gcc-14-powerpc64le-linux-gnu_14.2.0-23ubuntu1_ppc64el.deb ...
113s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-23ubuntu1) ...
113s Selecting previously unselected package gcc-14.
113s Preparing to unpack .../020-gcc-14_14.2.0-23ubuntu1_ppc64el.deb ...
113s Unpacking gcc-14 (14.2.0-23ubuntu1) ...
113s Selecting previously unselected package gcc-powerpc64le-linux-gnu.
113s Preparing to unpack .../021-gcc-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
113s Unpacking gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
113s Selecting previously unselected package gcc.
113s Preparing to unpack .../022-gcc_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
113s Unpacking gcc (4:14.2.0-1ubuntu1) ...
113s Selecting previously unselected package libstdc++-14-dev:ppc64el.
113s Preparing to unpack .../023-libstdc++-14-dev_14.2.0-23ubuntu1_ppc64el.deb ...
113s Unpacking libstdc++-14-dev:ppc64el (14.2.0-23ubuntu1) ...
113s Selecting previously unselected package g++-14-powerpc64le-linux-gnu.
113s Preparing to unpack .../024-g++-14-powerpc64le-linux-gnu_14.2.0-23ubuntu1_ppc64el.deb ...
113s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-23ubuntu1) ...
113s Selecting previously unselected package g++-14.
113s Preparing to unpack .../025-g++-14_14.2.0-23ubuntu1_ppc64el.deb ...
113s Unpacking g++-14 (14.2.0-23ubuntu1) ...
113s Selecting previously unselected package g++-powerpc64le-linux-gnu.
113s Preparing to unpack .../026-g++-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
113s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
113s Selecting previously unselected package g++.
113s Preparing to unpack .../027-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
113s Unpacking g++ (4:14.2.0-1ubuntu1) ...
113s Selecting previously unselected package build-essential.
113s Preparing to unpack .../028-build-essential_12.12ubuntu1_ppc64el.deb ...
113s Unpacking build-essential (12.12ubuntu1) ...
113s Selecting previously unselected package dctrl-tools.
113s Preparing to unpack .../029-dctrl-tools_2.24-3build3_ppc64el.deb ...
113s Unpacking dctrl-tools (2.24-3build3) ...
113s Selecting previously unselected package fonts-dejavu-mono.
113s Preparing to unpack .../030-fonts-dejavu-mono_2.37-8_all.deb ...
113s Unpacking fonts-dejavu-mono (2.37-8) ...
113s Selecting previously unselected package fonts-dejavu-core.
113s Preparing to unpack .../031-fonts-dejavu-core_2.37-8_all.deb ...
114s Unpacking fonts-dejavu-core (2.37-8) ...
114s Selecting previously unselected package fontconfig-config.
114s Preparing to unpack .../032-fontconfig-config_2.15.0-2.2ubuntu1_ppc64el.deb ...
114s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
114s Selecting previously unselected package libfontconfig1:ppc64el.
114s Preparing to unpack .../033-libfontconfig1_2.15.0-2.2ubuntu1_ppc64el.deb ...
114s Unpacking libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ...
114s Selecting previously unselected package fontconfig.
114s Preparing to unpack .../034-fontconfig_2.15.0-2.2ubuntu1_ppc64el.deb ...
114s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
114s Selecting previously unselected package libgfortran5:ppc64el.
114s Preparing to unpack .../035-libgfortran5_15.1.0-2ubuntu1_ppc64el.deb ...
114s Unpacking libgfortran5:ppc64el (15.1.0-2ubuntu1) ...
114s Selecting previously unselected package libgfortran-14-dev:ppc64el.
114s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-23ubuntu1_ppc64el.deb ...
114s Unpacking libgfortran-14-dev:ppc64el (14.2.0-23ubuntu1) ...
114s Selecting previously unselected package gfortran-14-powerpc64le-linux-gnu.
114s Preparing to unpack .../037-gfortran-14-powerpc64le-linux-gnu_14.2.0-23ubuntu1_ppc64el.deb ...
114s Unpacking gfortran-14-powerpc64le-linux-gnu (14.2.0-23ubuntu1) ...
114s Selecting previously unselected package gfortran-14.
114s Preparing to unpack .../038-gfortran-14_14.2.0-23ubuntu1_ppc64el.deb ...
114s Unpacking gfortran-14 (14.2.0-23ubuntu1) ...
114s Selecting previously unselected package gfortran-powerpc64le-linux-gnu.
114s Preparing to unpack .../039-gfortran-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
114s Unpacking gfortran-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
114s Selecting previously unselected package gfortran.
114s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
114s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
114s Selecting previously unselected package icu-devtools.
114s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_ppc64el.deb ...
114s Unpacking icu-devtools (76.1-1ubuntu2) ...
114s Selecting previously unselected package libblas3:ppc64el.
114s Preparing to unpack .../042-libblas3_3.12.1-2_ppc64el.deb ...
114s Unpacking libblas3:ppc64el (3.12.1-2) ...
114s Selecting previously unselected package libblas-dev:ppc64el.
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114s Unpacking libblas-dev:ppc64el (3.12.1-2) ...
114s Selecting previously unselected package libbz2-dev:ppc64el.
114s Preparing to unpack .../044-libbz2-dev_1.0.8-6_ppc64el.deb ...
114s Unpacking libbz2-dev:ppc64el (1.0.8-6) ...
114s Selecting previously unselected package libpixman-1-0:ppc64el.
114s Preparing to unpack .../045-libpixman-1-0_0.44.0-3_ppc64el.deb ...
114s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ...
114s Selecting previously unselected package libxcb-render0:ppc64el.
114s Preparing to unpack .../046-libxcb-render0_1.17.0-2_ppc64el.deb ...
114s Unpacking libxcb-render0:ppc64el (1.17.0-2) ...
114s Selecting previously unselected package libxcb-shm0:ppc64el.
114s Preparing to unpack .../047-libxcb-shm0_1.17.0-2_ppc64el.deb ...
114s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ...
114s Selecting previously unselected package libxrender1:ppc64el.
114s Preparing to unpack .../048-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ...
114s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ...
114s Selecting previously unselected package libcairo2:ppc64el.
114s Preparing to unpack .../049-libcairo2_1.18.4-1_ppc64el.deb ...
114s Unpacking libcairo2:ppc64el (1.18.4-1) ...
114s Selecting previously unselected package libdatrie1:ppc64el.
114s Preparing to unpack .../050-libdatrie1_0.2.13-3build1_ppc64el.deb ...
114s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ...
114s Selecting previously unselected package libdeflate0:ppc64el.
114s Preparing to unpack .../051-libdeflate0_1.23-2_ppc64el.deb ...
114s Unpacking libdeflate0:ppc64el (1.23-2) ...
114s Selecting previously unselected package libdeflate-dev:ppc64el.
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114s Unpacking libdeflate-dev:ppc64el (1.23-2) ...
114s Selecting previously unselected package libgraphite2-3:ppc64el.
114s Preparing to unpack .../053-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ...
114s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
114s Selecting previously unselected package libharfbuzz0b:ppc64el.
114s Preparing to unpack .../054-libharfbuzz0b_10.2.0-1_ppc64el.deb ...
114s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ...
114s Selecting previously unselected package x11-common.
114s Preparing to unpack .../055-x11-common_1%3a7.7+23ubuntu4_all.deb ...
114s Unpacking x11-common (1:7.7+23ubuntu4) ...
114s Selecting previously unselected package libice6:ppc64el.
114s Preparing to unpack .../056-libice6_2%3a1.1.1-1_ppc64el.deb ...
114s Unpacking libice6:ppc64el (2:1.1.1-1) ...
114s Selecting previously unselected package libicu-dev:ppc64el.
114s Preparing to unpack .../057-libicu-dev_76.1-1ubuntu2_ppc64el.deb ...
114s Unpacking libicu-dev:ppc64el (76.1-1ubuntu2) ...
115s Selecting previously unselected package libjpeg-turbo8:ppc64el.
115s Preparing to unpack .../058-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ...
115s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
115s Selecting previously unselected package libjpeg-turbo8-dev:ppc64el.
115s Preparing to unpack .../059-libjpeg-turbo8-dev_2.1.5-3ubuntu2_ppc64el.deb ...
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115s Selecting previously unselected package libjpeg8:ppc64el.
115s Preparing to unpack .../060-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
115s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
115s Selecting previously unselected package libjpeg8-dev:ppc64el.
115s Preparing to unpack .../061-libjpeg8-dev_8c-2ubuntu11_ppc64el.deb ...
115s Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu11) ...
115s Selecting previously unselected package libjpeg-dev:ppc64el.
115s Preparing to unpack .../062-libjpeg-dev_8c-2ubuntu11_ppc64el.deb ...
115s Unpacking libjpeg-dev:ppc64el (8c-2ubuntu11) ...
115s Selecting previously unselected package liblapack3:ppc64el.
115s Preparing to unpack .../063-liblapack3_3.12.1-2_ppc64el.deb ...
115s Unpacking liblapack3:ppc64el (3.12.1-2) ...
115s Selecting previously unselected package liblapack-dev:ppc64el.
115s Preparing to unpack .../064-liblapack-dev_3.12.1-2_ppc64el.deb ...
115s Unpacking liblapack-dev:ppc64el (3.12.1-2) ...
115s Selecting previously unselected package liblerc4:ppc64el.
115s Preparing to unpack .../065-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ...
115s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
115s Selecting previously unselected package libncurses-dev:ppc64el.
115s Preparing to unpack .../066-libncurses-dev_6.5+20250216-2_ppc64el.deb ...
115s Unpacking libncurses-dev:ppc64el (6.5+20250216-2) ...
115s Selecting previously unselected package libthai-data.
115s Preparing to unpack .../067-libthai-data_0.1.29-2build1_all.deb ...
115s Unpacking libthai-data (0.1.29-2build1) ...
115s Selecting previously unselected package libthai0:ppc64el.
115s Preparing to unpack .../068-libthai0_0.1.29-2build1_ppc64el.deb ...
115s Unpacking libthai0:ppc64el (0.1.29-2build1) ...
115s Selecting previously unselected package libpango-1.0-0:ppc64el.
115s Preparing to unpack .../069-libpango-1.0-0_1.56.3-1_ppc64el.deb ...
115s Unpacking libpango-1.0-0:ppc64el (1.56.3-1) ...
115s Selecting previously unselected package libpangoft2-1.0-0:ppc64el.
115s Preparing to unpack .../070-libpangoft2-1.0-0_1.56.3-1_ppc64el.deb ...
115s Unpacking libpangoft2-1.0-0:ppc64el (1.56.3-1) ...
115s Selecting previously unselected package libpangocairo-1.0-0:ppc64el.
115s Preparing to unpack .../071-libpangocairo-1.0-0_1.56.3-1_ppc64el.deb ...
115s Unpacking libpangocairo-1.0-0:ppc64el (1.56.3-1) ...
115s Selecting previously unselected package libpaper2:ppc64el.
115s Preparing to unpack .../072-libpaper2_2.2.5-0.3_ppc64el.deb ...
115s Unpacking libpaper2:ppc64el (2.2.5-0.3) ...
115s Selecting previously unselected package libpaper-utils.
115s Preparing to unpack .../073-libpaper-utils_2.2.5-0.3_ppc64el.deb ...
115s Unpacking libpaper-utils (2.2.5-0.3) ...
115s Selecting previously unselected package libpcre2-16-0:ppc64el.
115s Preparing to unpack .../074-libpcre2-16-0_10.45-1_ppc64el.deb ...
115s Unpacking libpcre2-16-0:ppc64el (10.45-1) ...
115s Selecting previously unselected package libpcre2-32-0:ppc64el.
115s Preparing to unpack .../075-libpcre2-32-0_10.45-1_ppc64el.deb ...
115s Unpacking libpcre2-32-0:ppc64el (10.45-1) ...
115s Selecting previously unselected package libpcre2-posix3:ppc64el.
115s Preparing to unpack .../076-libpcre2-posix3_10.45-1_ppc64el.deb ...
115s Unpacking libpcre2-posix3:ppc64el (10.45-1) ...
115s Selecting previously unselected package libpcre2-dev:ppc64el.
115s Preparing to unpack .../077-libpcre2-dev_10.45-1_ppc64el.deb ...
115s Unpacking libpcre2-dev:ppc64el (10.45-1) ...
115s Selecting previously unselected package libpkgconf3:ppc64el.
115s Preparing to unpack .../078-libpkgconf3_1.8.1-4_ppc64el.deb ...
115s Unpacking libpkgconf3:ppc64el (1.8.1-4) ...
115s Selecting previously unselected package zlib1g-dev:ppc64el.
115s Preparing to unpack .../079-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ...
115s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
115s Selecting previously unselected package libpng-dev:ppc64el.
115s Preparing to unpack .../080-libpng-dev_1.6.47-1.1_ppc64el.deb ...
115s Unpacking libpng-dev:ppc64el (1.6.47-1.1) ...
115s Selecting previously unselected package libreadline-dev:ppc64el.
115s Preparing to unpack .../081-libreadline-dev_8.2-6_ppc64el.deb ...
115s Unpacking libreadline-dev:ppc64el (8.2-6) ...
115s Selecting previously unselected package libsharpyuv0:ppc64el.
115s Preparing to unpack .../082-libsharpyuv0_1.5.0-0.1_ppc64el.deb ...
115s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ...
115s Selecting previously unselected package libsm6:ppc64el.
115s Preparing to unpack .../083-libsm6_2%3a1.2.6-1_ppc64el.deb ...
115s Unpacking libsm6:ppc64el (2:1.2.6-1) ...
115s Selecting previously unselected package libtcl8.6:ppc64el.
115s Preparing to unpack .../084-libtcl8.6_8.6.16+dfsg-1_ppc64el.deb ...
115s Unpacking libtcl8.6:ppc64el (8.6.16+dfsg-1) ...
115s Selecting previously unselected package libjbig0:ppc64el.
115s Preparing to unpack .../085-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ...
115s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ...
115s Selecting previously unselected package libwebp7:ppc64el.
115s Preparing to unpack .../086-libwebp7_1.5.0-0.1_ppc64el.deb ...
115s Unpacking libwebp7:ppc64el (1.5.0-0.1) ...
115s Selecting previously unselected package libtiff6:ppc64el.
115s Preparing to unpack .../087-libtiff6_4.7.0-3ubuntu1_ppc64el.deb ...
115s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu1) ...
115s Selecting previously unselected package libxft2:ppc64el.
115s Preparing to unpack .../088-libxft2_2.3.6-1build1_ppc64el.deb ...
115s Unpacking libxft2:ppc64el (2.3.6-1build1) ...
115s Selecting previously unselected package libxss1:ppc64el.
115s Preparing to unpack .../089-libxss1_1%3a1.2.3-1build3_ppc64el.deb ...
115s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ...
116s Selecting previously unselected package libtk8.6:ppc64el.
116s Preparing to unpack .../090-libtk8.6_8.6.16-1_ppc64el.deb ...
116s Unpacking libtk8.6:ppc64el (8.6.16-1) ...
116s Selecting previously unselected package libxt6t64:ppc64el.
116s Preparing to unpack .../091-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ...
116s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
116s Selecting previously unselected package libzstd-dev:ppc64el.
116s Preparing to unpack .../092-libzstd-dev_1.5.7+dfsg-1_ppc64el.deb ...
116s Unpacking libzstd-dev:ppc64el (1.5.7+dfsg-1) ...
116s Selecting previously unselected package zip.
116s Preparing to unpack .../093-zip_3.0-14ubuntu2_ppc64el.deb ...
116s Unpacking zip (3.0-14ubuntu2) ...
116s Selecting previously unselected package unzip.
116s Preparing to unpack .../094-unzip_6.0-28ubuntu6_ppc64el.deb ...
116s Unpacking unzip (6.0-28ubuntu6) ...
116s Selecting previously unselected package xdg-utils.
116s Preparing to unpack .../095-xdg-utils_1.2.1-2ubuntu1_all.deb ...
116s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
116s Selecting previously unselected package r-base-core.
116s Preparing to unpack .../096-r-base-core_4.5.0-3_ppc64el.deb ...
116s Unpacking r-base-core (4.5.0-3) ...
116s Selecting previously unselected package liblzma-dev:ppc64el.
116s Preparing to unpack .../097-liblzma-dev_5.8.1-1_ppc64el.deb ...
116s Unpacking liblzma-dev:ppc64el (5.8.1-1) ...
116s Selecting previously unselected package pkgconf-bin.
116s Preparing to unpack .../098-pkgconf-bin_1.8.1-4_ppc64el.deb ...
116s Unpacking pkgconf-bin (1.8.1-4) ...
116s Selecting previously unselected package pkgconf:ppc64el.
116s Preparing to unpack .../099-pkgconf_1.8.1-4_ppc64el.deb ...
116s Unpacking pkgconf:ppc64el (1.8.1-4) ...
116s Selecting previously unselected package libtirpc-dev:ppc64el.
116s Preparing to unpack .../100-libtirpc-dev_1.3.6+ds-1_ppc64el.deb ...
116s Unpacking libtirpc-dev:ppc64el (1.3.6+ds-1) ...
116s Selecting previously unselected package r-base-dev.
116s Preparing to unpack .../101-r-base-dev_4.5.0-3_all.deb ...
116s Unpacking r-base-dev (4.5.0-3) ...
116s Selecting previously unselected package pkg-r-autopkgtest.
116s Preparing to unpack .../102-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
116s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
116s Selecting previously unselected package r-bioc-biocgenerics.
116s Preparing to unpack .../103-r-bioc-biocgenerics_0.52.0-2_all.deb ...
116s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
116s Selecting previously unselected package r-bioc-s4vectors.
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116s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
116s Selecting previously unselected package r-bioc-iranges.
116s Preparing to unpack .../105-r-bioc-iranges_2.40.1-3_ppc64el.deb ...
116s Unpacking r-bioc-iranges (2.40.1-3) ...
116s Selecting previously unselected package r-bioc-zlibbioc.
116s Preparing to unpack .../106-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
116s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
116s Selecting previously unselected package r-bioc-xvector.
116s Preparing to unpack .../107-r-bioc-xvector_0.46.0-2_ppc64el.deb ...
116s Unpacking r-bioc-xvector (0.46.0-2) ...
116s Selecting previously unselected package r-cran-curl.
116s Preparing to unpack .../108-r-cran-curl_6.2.1+dfsg-1ubuntu1_ppc64el.deb ...
116s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
116s Selecting previously unselected package r-cran-jsonlite.
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116s Selecting previously unselected package r-cran-mime.
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116s Selecting previously unselected package r-cran-sys.
116s Preparing to unpack .../111-r-cran-sys_3.4.3-1_ppc64el.deb ...
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116s Selecting previously unselected package r-cran-askpass.
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116s Selecting previously unselected package r-cran-openssl.
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116s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
116s Selecting previously unselected package r-cran-r6.
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116s Selecting previously unselected package r-cran-httr.
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116s Selecting previously unselected package r-bioc-ucsc.utils.
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116s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
116s Selecting previously unselected package r-bioc-genomeinfodbdata.
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117s Preparing to unpack .../118-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
117s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
117s Selecting previously unselected package r-cran-crayon.
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117s Selecting previously unselected package r-bioc-biostrings.
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117s Selecting previously unselected package r-bioc-pwalign.
117s Preparing to unpack .../121-r-bioc-pwalign_1.2.0-3_ppc64el.deb ...
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117s Selecting previously unselected package r-cran-runit.
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117s Preparing to unpack .../123-zstd_1.5.7+dfsg-1_ppc64el.deb ...
117s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ...
117s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
117s Setting up libpixman-1-0:ppc64el (0.44.0-3) ...
117s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ...
117s Setting up libncurses-dev:ppc64el (6.5+20250216-2) ...
117s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
117s Setting up libzstd-dev:ppc64el (1.5.7+dfsg-1) ...
117s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ...
117s Setting up libdatrie1:ppc64el (0.2.13-3build1) ...
117s Setting up gcc-14-base:ppc64el (14.2.0-23ubuntu1) ...
117s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
117s Setting up libtirpc-common (1.3.6+ds-1) ...
117s Setting up unzip (6.0-28ubuntu6) ...
117s Setting up x11-common (1:7.7+23ubuntu4) ...
117s Setting up libdeflate0:ppc64el (1.23-2) ...
117s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
117s Setting up libreadline-dev:ppc64el (8.2-6) ...
117s Setting up libgomp1:ppc64el (15.1.0-2ubuntu1) ...
117s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ...
117s Setting up libpcre2-16-0:ppc64el (10.45-1) ...
117s Setting up zip (3.0-14ubuntu2) ...
117s Setting up libpcre2-32-0:ppc64el (10.45-1) ...
117s Setting up libblas3:ppc64el (3.12.1-2) ...
117s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
117s Setting up libpkgconf3:ppc64el (1.8.1-4) ...
117s Setting up xz-utils (5.8.1-1) ...
117s Setting up libquadmath0:ppc64el (15.1.0-2ubuntu1) ...
117s Setting up fonts-dejavu-mono (2.37-8) ...
117s Setting up libmpc3:ppc64el (1.3.1-1build2) ...
117s Setting up libatomic1:ppc64el (15.1.0-2ubuntu1) ...
117s Setting up libtcl8.6:ppc64el (8.6.16+dfsg-1) ...
117s Setting up icu-devtools (76.1-1ubuntu2) ...
117s Setting up fonts-dejavu-core (2.37-8) ...
117s Setting up pkgconf-bin (1.8.1-4) ...
117s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
117s Setting up libgfortran5:ppc64el (15.1.0-2ubuntu1) ...
117s Setting up libwebp7:ppc64el (1.5.0-0.1) ...
117s Setting up liblzma-dev:ppc64el (5.8.1-1) ...
117s Setting up libubsan1:ppc64el (15.1.0-2ubuntu1) ...
117s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
117s Setting up libpcre2-posix3:ppc64el (10.45-1) ...
117s Setting up libasan8:ppc64el (15.1.0-2ubuntu1) ...
117s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ...
117s Setting up libthai-data (0.1.29-2build1) ...
117s Setting up libxss1:ppc64el (1:1.2.3-1build3) ...
117s Setting up libpaper2:ppc64el (2.2.5-0.3) ...
117s Setting up libtsan2:ppc64el (15.1.0-2ubuntu1) ...
117s Setting up libisl23:ppc64el (0.27-1) ...
117s Setting up libdeflate-dev:ppc64el (1.23-2) ...
117s Setting up libicu-dev:ppc64el (76.1-1ubuntu2) ...
117s Setting up xdg-utils (1.2.1-2ubuntu1) ...
117s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
117s Setting up zstd (1.5.7+dfsg-1) ...
117s Setting up libcc1-0:ppc64el (15.1.0-2ubuntu1) ...
117s Setting up liblsan0:ppc64el (15.1.0-2ubuntu1) ...
117s Setting up libblas-dev:ppc64el (3.12.1-2) ...
117s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode
117s Setting up dctrl-tools (2.24-3build3) ...
117s Setting up libitm1:ppc64el (15.1.0-2ubuntu1) ...
117s Setting up libbz2-dev:ppc64el (1.0.8-6) ...
117s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
117s Setting up libice6:ppc64el (2:1.1.1-1) ...
117s Setting up libjpeg-turbo8-dev:ppc64el (2.1.5-3ubuntu2) ...
117s Setting up liblapack3:ppc64el (3.12.1-2) ...
117s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
117s Setting up libpcre2-dev:ppc64el (10.45-1) ...
117s Setting up libtirpc3t64:ppc64el (1.3.6+ds-1) ...
117s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ...
118s Setting up libpng-dev:ppc64el (1.6.47-1.1) ...
118s Setting up libpaper-utils (2.2.5-0.3) ...
118s Setting up pkgconf:ppc64el (1.8.1-4) ...
118s Setting up libthai0:ppc64el (0.1.29-2build1) ...
118s Setting up libtirpc-dev:ppc64el (1.3.6+ds-1) ...
118s Setting up liblapack-dev:ppc64el (3.12.1-2) ...
118s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode
118s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-23ubuntu1) ...
118s Setting up cpp-14 (14.2.0-23ubuntu1) ...
118s Setting up libtiff6:ppc64el (4.7.0-3ubuntu1) ...
118s Setting up libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ...
118s Setting up libgcc-14-dev:ppc64el (14.2.0-23ubuntu1) ...
118s Setting up libjpeg8-dev:ppc64el (8c-2ubuntu11) ...
118s Setting up libstdc++-14-dev:ppc64el (14.2.0-23ubuntu1) ...
118s Setting up libsm6:ppc64el (2:1.2.6-1) ...
118s Setting up cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
118s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-23ubuntu1) ...
118s Setting up libgfortran-14-dev:ppc64el (14.2.0-23ubuntu1) ...
118s Setting up fontconfig (2.15.0-2.2ubuntu1) ...
120s Regenerating fonts cache... done.
120s Setting up libxft2:ppc64el (2.3.6-1build1) ...
120s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-23ubuntu1) ...
120s Setting up libtk8.6:ppc64el (8.6.16-1) ...
120s Setting up libpango-1.0-0:ppc64el (1.56.3-1) ...
120s Setting up libjpeg-dev:ppc64el (8c-2ubuntu11) ...
120s Setting up libcairo2:ppc64el (1.18.4-1) ...
120s Setting up gcc-14 (14.2.0-23ubuntu1) ...
120s Setting up gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
120s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
120s Setting up cpp (4:14.2.0-1ubuntu1) ...
120s Setting up g++-14 (14.2.0-23ubuntu1) ...
120s Setting up gfortran-14-powerpc64le-linux-gnu (14.2.0-23ubuntu1) ...
120s Setting up libpangoft2-1.0-0:ppc64el (1.56.3-1) ...
120s Setting up gfortran-14 (14.2.0-23ubuntu1) ...
120s Setting up libpangocairo-1.0-0:ppc64el (1.56.3-1) ...
120s Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
120s Setting up gcc (4:14.2.0-1ubuntu1) ...
120s Setting up gfortran-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
120s Setting up r-base-core (4.5.0-3) ...
120s Creating config file /etc/R/Renviron with new version
120s Setting up r-cran-crayon (1.5.3-1) ...
120s Setting up g++ (4:14.2.0-1ubuntu1) ...
120s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
120s Setting up build-essential (12.12ubuntu1) ...
120s Setting up r-cran-r6 (2.6.1-1) ...
120s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
120s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
120s Setting up r-bioc-biocgenerics (0.52.0-2) ...
120s Setting up r-cran-sys (3.4.3-1) ...
120s Setting up r-cran-mime (0.12-2) ...
120s Setting up gfortran (4:14.2.0-1ubuntu1) ...
120s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
120s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
120s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
120s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
120s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
120s Setting up r-cran-askpass (1.2.1-1) ...
120s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
120s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
120s Setting up r-cran-runit (0.4.33-1) ...
120s Setting up r-bioc-iranges (2.40.1-3) ...
120s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
120s Setting up r-base-dev (4.5.0-3) ...
120s Setting up r-cran-httr (1.4.7+dfsg-1) ...
120s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
120s Setting up r-bioc-xvector (0.46.0-2) ...
120s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
120s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
120s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
120s Setting up r-bioc-pwalign (1.2.0-3) ...
120s Processing triggers for man-db (2.13.0-1) ...
122s Processing triggers for install-info (7.1.1-1) ...
122s Processing triggers for libc-bin (2.41-6ubuntu1) ...
123s autopkgtest [12:43:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
123s autopkgtest [12:43:24]: test pkg-r-autopkgtest: [-----------------------
123s Test: Try to load the R library pwalign
123s 
123s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
123s Copyright (C) 2025 The R Foundation for Statistical Computing
123s Platform: powerpc64le-unknown-linux-gnu
123s 
123s R is free software and comes with ABSOLUTELY NO WARRANTY.
123s You are welcome to redistribute it under certain conditions.
123s Type 'license()' or 'licence()' for distribution details.
123s 
123s R is a collaborative project with many contributors.
123s Type 'contributors()' for more information and
123s 'citation()' on how to cite R or R packages in publications.
123s 
123s Type 'demo()' for some demos, 'help()' for on-line help, or
123s 'help.start()' for an HTML browser interface to help.
123s Type 'q()' to quit R.
123s 
123s > library('pwalign')
123s Loading required package: BiocGenerics
123s 
123s Attaching package: ‘BiocGenerics’
123s 
123s The following objects are masked from ‘package:stats’:
123s 
123s     IQR, mad, sd, var, xtabs
123s 
123s The following objects are masked from ‘package:base’:
123s 
123s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
123s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
123s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
123s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
123s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
123s     table, tapply, union, unique, unsplit, which.max, which.min
123s 
123s Loading required package: S4Vectors
123s Loading required package: stats4
124s 
124s Attaching package: ‘S4Vectors’
124s 
124s The following object is masked from ‘package:utils’:
124s 
124s     findMatches
124s 
124s The following objects are masked from ‘package:base’:
124s 
124s     expand.grid, I, unname
124s 
124s Loading required package: IRanges
125s Loading required package: Biostrings
125s Loading required package: XVector
125s Loading required package: GenomeInfoDb
126s 
126s Attaching package: ‘Biostrings’
126s 
126s The following object is masked from ‘package:base’:
126s 
126s     strsplit
126s 
126s 
126s Attaching package: ‘pwalign’
126s 
126s The following objects are masked from ‘package:Biostrings’:
126s 
126s     aligned, alignedPattern, alignedSubject, compareStrings, deletion,
126s     errorSubstitutionMatrices, indel, insertion, mismatchSummary,
126s     mismatchTable, nedit, nindel, nucleotideSubstitutionMatrix,
126s     pairwiseAlignment, PairwiseAlignments,
126s     PairwiseAlignmentsSingleSubject, pid, qualitySubstitutionMatrices,
126s     stringDist, unaligned, writePairwiseAlignments
126s 
126s > 
126s Other tests are currently unsupported!
126s They will be progressively added.
127s autopkgtest [12:43:28]: test pkg-r-autopkgtest: -----------------------]
127s autopkgtest [12:43:28]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
127s pkg-r-autopkgtest    PASS
127s autopkgtest [12:43:28]: @@@@@@@@@@@@@@@@@@@@ summary
127s pkg-r-autopkgtest    PASS
144s nova [W] Using flock in prodstack6-ppc64el
144s Creating nova instance adt-questing-ppc64el-r-bioc-pwalign-20250504-124121-juju-7f2275-prod-proposed-migration-environment-21-b7f45994-8439-47c7-bda3-0976ca21c967 from image adt/ubuntu-questing-ppc64el-server-20250504.img (UUID 65e029e2-4bd9-4b30-b646-f26a73cdeb97)...
144s nova [W] Timed out waiting for e6d0ff08-6862-40fa-b72b-2d7332c0ae70 to get deleted.