0s autopkgtest [03:40:16]: starting date and time: 2025-07-12 03:40:16+0000 0s autopkgtest [03:40:16]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [03:40:16]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.etfr4adl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python-reportlab --apt-upgrade python-biopython --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python-reportlab/4.4.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-ppc64el-25.secgroup --name adt-questing-ppc64el-python-biopython-20250712-034016-juju-7f2275-prod-proposed-migration-environment-2-947f721e-2ac6-477e-8dc2-897d2a277921 --image adt/ubuntu-questing-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-questing-ppc64el-python-biopython-20250712-034016-juju-7f2275-prod-proposed-migration-environment-2-947f721e-2ac6-477e-8dc2-897d2a277921 from image adt/ubuntu-questing-ppc64el-server-20250712.img (UUID 059a70c2-c73c-4c03-a65e-958ca9af96a5)... 100s autopkgtest [03:41:56]: testbed dpkg architecture: ppc64el 100s autopkgtest [03:41:56]: testbed apt version: 3.1.3 101s autopkgtest [03:41:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 101s autopkgtest [03:41:57]: testbed release detected to be: None 102s autopkgtest [03:41:58]: updating testbed package index (apt update) 102s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [249 kB] 102s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 102s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 102s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [207 kB] 102s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [39.9 kB] 102s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [15.4 kB] 102s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el Packages [58.9 kB] 102s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el Packages [166 kB] 102s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse ppc64el Packages [4452 B] 102s Fetched 741 kB in 0s (1944 kB/s) 103s Reading package lists... 103s autopkgtest [03:41:59]: upgrading testbed (apt dist-upgrade and autopurge) 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Calculating upgrade... 104s The following packages will be upgraded: 104s htop 104s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 230 kB of archives. 104s After this operation, 0 B of additional disk space will be used. 104s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el htop ppc64el 3.4.1-5 [230 kB] 105s Fetched 230 kB in 0s (2733 kB/s) 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117998 files and directories currently installed.) 106s Preparing to unpack .../htop_3.4.1-5_ppc64el.deb ... 106s Unpacking htop (3.4.1-5) over (3.4.1-4) ... 106s Setting up htop (3.4.1-5) ... 106s Processing triggers for man-db (2.13.1-1) ... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Solving dependencies... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s autopkgtest [03:42:06]: testbed running kernel: Linux 6.15.0-4-generic #4-Ubuntu SMP Fri Jul 4 14:38:10 UTC 2025 110s autopkgtest [03:42:06]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biopython 113s Get:1 http://ftpmaster.internal/ubuntu questing/universe python-biopython 1.85+dfsg-4 (dsc) [3070 B] 113s Get:2 http://ftpmaster.internal/ubuntu questing/universe python-biopython 1.85+dfsg-4 (tar) [14.6 MB] 113s Get:3 http://ftpmaster.internal/ubuntu questing/universe python-biopython 1.85+dfsg-4 (diff) [42.8 kB] 113s gpgv: Signature made Fri Apr 11 19:33:28 2025 UTC 113s gpgv: using RSA key D54C3BFAFFB042DE382DA5D741CE7F0B9F1B8B32 113s gpgv: Can't check signature: No public key 113s dpkg-source: warning: cannot verify inline signature for ./python-biopython_1.85+dfsg-4.dsc: no acceptable signature found 114s autopkgtest [03:42:10]: testing package python-biopython version 1.85+dfsg-4 115s autopkgtest [03:42:11]: build not needed 120s autopkgtest [03:42:16]: test dependencies: preparing testbed 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Solving dependencies... 121s The following NEW packages will be installed: 121s fontconfig-config fonts-urw-base35 libblas3 libcairo2 libdeflate0 121s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 121s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 121s libjs-sphinxdoc libjs-underscore liblapack3 liblcms2-2 liblerc4 libopenjp2-7 121s libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 121s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python-biopython-doc 121s python3-all python3-biopython python3-biopython-sql python3-cairo 121s python3-charset-normalizer python3-freetype python3-numpy python3-numpy-dev 121s python3-pil python3-reportlab python3-rlpycairo sgml-base w3c-sgml-lib 121s x11-common xfonts-encodings xfonts-utils xml-core 121s 0 upgraded, 50 newly installed, 0 to remove and 0 not upgraded. 121s Need to get 47.4 MB of archives. 121s After this operation, 133 MB of additional disk space will be used. 121s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy-dev ppc64el 1:2.2.4+ds-1ubuntu1 [153 kB] 121s Get:2 http://ftpmaster.internal/ubuntu questing/main ppc64el libblas3 ppc64el 3.12.1-2build1 [239 kB] 121s Get:3 http://ftpmaster.internal/ubuntu questing/main ppc64el libgfortran5 ppc64el 15.1.0-8ubuntu1 [620 kB] 121s Get:4 http://ftpmaster.internal/ubuntu questing/main ppc64el liblapack3 ppc64el 3.12.1-2build1 [2817 kB] 121s Get:5 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy ppc64el 1:2.2.4+ds-1ubuntu1 [4887 kB] 121s Get:6 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 121s Get:7 http://ftpmaster.internal/ubuntu questing/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 121s Get:8 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 121s Get:9 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 121s Get:10 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 122s Get:11 http://ftpmaster.internal/ubuntu questing/main ppc64el fontconfig-config ppc64el 2.15.0-2.3ubuntu1 [38.1 kB] 122s Get:12 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontconfig1 ppc64el 2.15.0-2.3ubuntu1 [188 kB] 122s Get:13 http://ftpmaster.internal/ubuntu questing/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 122s Get:14 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 122s Get:15 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 122s Get:16 http://ftpmaster.internal/ubuntu questing/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 122s Get:17 http://ftpmaster.internal/ubuntu questing/main ppc64el libcairo2 ppc64el 1.18.4-1 [746 kB] 122s Get:18 http://ftpmaster.internal/ubuntu questing/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 122s Get:19 http://ftpmaster.internal/ubuntu questing/main ppc64el libgomp1 ppc64el 15.1.0-8ubuntu1 [169 kB] 122s Get:20 http://ftpmaster.internal/ubuntu questing/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 122s Get:21 http://ftpmaster.internal/ubuntu questing/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 122s Get:22 http://ftpmaster.internal/ubuntu questing/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 122s Get:23 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 122s Get:24 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 122s Get:25 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 122s Get:26 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 122s Get:27 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-sphinxdoc all 8.2.3-1ubuntu2 [28.0 kB] 122s Get:28 http://ftpmaster.internal/ubuntu questing/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 122s Get:29 http://ftpmaster.internal/ubuntu questing/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 122s Get:30 http://ftpmaster.internal/ubuntu questing/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB] 122s Get:31 http://ftpmaster.internal/ubuntu questing/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 122s Get:32 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 122s Get:33 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 122s Get:34 http://ftpmaster.internal/ubuntu questing/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu1 [283 kB] 122s Get:35 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 122s Get:36 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 122s Get:37 http://ftpmaster.internal/ubuntu questing/universe ppc64el python-biopython-doc all 1.85+dfsg-4 [18.2 MB] 122s Get:38 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-all ppc64el 3.13.5-1 [882 B] 122s Get:39 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-charset-normalizer ppc64el 3.4.2-1 [132 kB] 122s Get:40 http://ftpmaster.internal/ubuntu questing/main ppc64el libopenjp2-7 ppc64el 2.5.3-2 [248 kB] 122s Get:41 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-pil ppc64el 11.1.0-5build1 [601 kB] 122s Get:42 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-cairo ppc64el 1.27.0-2 [129 kB] 122s Get:43 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 122s Get:44 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 122s Get:45 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el python3-reportlab all 4.4.2-1 [1145 kB] 122s Get:46 http://ftpmaster.internal/ubuntu questing/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 122s Get:47 http://ftpmaster.internal/ubuntu questing/main ppc64el xml-core all 0.19 [20.3 kB] 122s Get:48 http://ftpmaster.internal/ubuntu questing/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 122s Get:49 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython ppc64el 1.85+dfsg-4 [1764 kB] 122s Get:50 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython-sql all 1.85+dfsg-4 [26.4 kB] 122s Fetched 47.4 MB in 1s (41.5 MB/s) 122s Selecting previously unselected package python3-numpy-dev:ppc64el. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117998 files and directories currently installed.) 122s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 122s Unpacking python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 122s Selecting previously unselected package libblas3:ppc64el. 122s Preparing to unpack .../01-libblas3_3.12.1-2build1_ppc64el.deb ... 122s Unpacking libblas3:ppc64el (3.12.1-2build1) ... 122s Selecting previously unselected package libgfortran5:ppc64el. 122s Preparing to unpack .../02-libgfortran5_15.1.0-8ubuntu1_ppc64el.deb ... 122s Unpacking libgfortran5:ppc64el (15.1.0-8ubuntu1) ... 122s Selecting previously unselected package liblapack3:ppc64el. 122s Preparing to unpack .../03-liblapack3_3.12.1-2build1_ppc64el.deb ... 122s Unpacking liblapack3:ppc64el (3.12.1-2build1) ... 122s Selecting previously unselected package python3-numpy. 122s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 122s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 123s Selecting previously unselected package libfontenc1:ppc64el. 123s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 123s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 123s Selecting previously unselected package x11-common. 123s Preparing to unpack .../06-x11-common_1%3a7.7+24ubuntu1_all.deb ... 123s Unpacking x11-common (1:7.7+24ubuntu1) ... 123s Selecting previously unselected package xfonts-encodings. 123s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 123s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 123s Selecting previously unselected package xfonts-utils. 123s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 123s Unpacking xfonts-utils (1:7.7+7) ... 123s Selecting previously unselected package fonts-urw-base35. 123s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 123s Unpacking fonts-urw-base35 (20200910-8) ... 123s Selecting previously unselected package fontconfig-config. 123s Preparing to unpack .../10-fontconfig-config_2.15.0-2.3ubuntu1_ppc64el.deb ... 123s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 123s Selecting previously unselected package libfontconfig1:ppc64el. 123s Preparing to unpack .../11-libfontconfig1_2.15.0-2.3ubuntu1_ppc64el.deb ... 123s Unpacking libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 123s Selecting previously unselected package libpixman-1-0:ppc64el. 123s Preparing to unpack .../12-libpixman-1-0_0.44.0-3_ppc64el.deb ... 123s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 123s Selecting previously unselected package libxcb-render0:ppc64el. 123s Preparing to unpack .../13-libxcb-render0_1.17.0-2_ppc64el.deb ... 123s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 123s Selecting previously unselected package libxcb-shm0:ppc64el. 123s Preparing to unpack .../14-libxcb-shm0_1.17.0-2_ppc64el.deb ... 123s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 123s Selecting previously unselected package libxrender1:ppc64el. 123s Preparing to unpack .../15-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 123s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 123s Selecting previously unselected package libcairo2:ppc64el. 123s Preparing to unpack .../16-libcairo2_1.18.4-1_ppc64el.deb ... 123s Unpacking libcairo2:ppc64el (1.18.4-1) ... 123s Selecting previously unselected package libdeflate0:ppc64el. 123s Preparing to unpack .../17-libdeflate0_1.23-2_ppc64el.deb ... 123s Unpacking libdeflate0:ppc64el (1.23-2) ... 123s Selecting previously unselected package libgomp1:ppc64el. 123s Preparing to unpack .../18-libgomp1_15.1.0-8ubuntu1_ppc64el.deb ... 123s Unpacking libgomp1:ppc64el (15.1.0-8ubuntu1) ... 123s Selecting previously unselected package libgraphite2-3:ppc64el. 123s Preparing to unpack .../19-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 123s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 123s Selecting previously unselected package libharfbuzz0b:ppc64el. 123s Preparing to unpack .../20-libharfbuzz0b_10.2.0-1_ppc64el.deb ... 123s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ... 123s Selecting previously unselected package libimagequant0:ppc64el. 123s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_ppc64el.deb ... 123s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 123s Selecting previously unselected package libjpeg-turbo8:ppc64el. 123s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 123s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 123s Selecting previously unselected package libjpeg8:ppc64el. 123s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 123s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 123s Selecting previously unselected package libjs-jquery. 123s Preparing to unpack .../24-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 123s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 124s Selecting previously unselected package libjs-underscore. 124s Preparing to unpack .../25-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 124s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 124s Selecting previously unselected package libjs-sphinxdoc. 124s Preparing to unpack .../26-libjs-sphinxdoc_8.2.3-1ubuntu2_all.deb ... 124s Unpacking libjs-sphinxdoc (8.2.3-1ubuntu2) ... 124s Selecting previously unselected package liblcms2-2:ppc64el. 124s Preparing to unpack .../27-liblcms2-2_2.16-2_ppc64el.deb ... 124s Unpacking liblcms2-2:ppc64el (2.16-2) ... 124s Selecting previously unselected package liblerc4:ppc64el. 124s Preparing to unpack .../28-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 124s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 124s Selecting previously unselected package libraqm0:ppc64el. 124s Preparing to unpack .../29-libraqm0_0.10.2-1_ppc64el.deb ... 124s Unpacking libraqm0:ppc64el (0.10.2-1) ... 124s Selecting previously unselected package libsharpyuv0:ppc64el. 124s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 124s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 124s Selecting previously unselected package libjbig0:ppc64el. 124s Preparing to unpack .../31-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 124s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 124s Selecting previously unselected package libwebp7:ppc64el. 124s Preparing to unpack .../32-libwebp7_1.5.0-0.1_ppc64el.deb ... 124s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 124s Selecting previously unselected package libtiff6:ppc64el. 124s Preparing to unpack .../33-libtiff6_4.7.0-3ubuntu1_ppc64el.deb ... 124s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu1) ... 124s Selecting previously unselected package libwebpdemux2:ppc64el. 124s Preparing to unpack .../34-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 124s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 124s Selecting previously unselected package libwebpmux3:ppc64el. 124s Preparing to unpack .../35-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 124s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 124s Selecting previously unselected package python-biopython-doc. 124s Preparing to unpack .../36-python-biopython-doc_1.85+dfsg-4_all.deb ... 124s Unpacking python-biopython-doc (1.85+dfsg-4) ... 124s Selecting previously unselected package python3-all. 124s Preparing to unpack .../37-python3-all_3.13.5-1_ppc64el.deb ... 124s Unpacking python3-all (3.13.5-1) ... 124s Selecting previously unselected package python3-charset-normalizer. 124s Preparing to unpack .../38-python3-charset-normalizer_3.4.2-1_ppc64el.deb ... 124s Unpacking python3-charset-normalizer (3.4.2-1) ... 124s Selecting previously unselected package libopenjp2-7:ppc64el. 124s Preparing to unpack .../39-libopenjp2-7_2.5.3-2_ppc64el.deb ... 124s Unpacking libopenjp2-7:ppc64el (2.5.3-2) ... 124s Selecting previously unselected package python3-pil:ppc64el. 124s Preparing to unpack .../40-python3-pil_11.1.0-5build1_ppc64el.deb ... 124s Unpacking python3-pil:ppc64el (11.1.0-5build1) ... 124s Selecting previously unselected package python3-cairo. 124s Preparing to unpack .../41-python3-cairo_1.27.0-2_ppc64el.deb ... 124s Unpacking python3-cairo (1.27.0-2) ... 124s Selecting previously unselected package python3-freetype. 124s Preparing to unpack .../42-python3-freetype_2.5.1-1_all.deb ... 124s Unpacking python3-freetype (2.5.1-1) ... 124s Selecting previously unselected package python3-rlpycairo. 124s Preparing to unpack .../43-python3-rlpycairo_0.3.0-3_all.deb ... 124s Unpacking python3-rlpycairo (0.3.0-3) ... 124s Selecting previously unselected package python3-reportlab. 124s Preparing to unpack .../44-python3-reportlab_4.4.2-1_all.deb ... 124s Unpacking python3-reportlab (4.4.2-1) ... 124s Selecting previously unselected package sgml-base. 124s Preparing to unpack .../45-sgml-base_1.31+nmu1_all.deb ... 124s Unpacking sgml-base (1.31+nmu1) ... 124s Selecting previously unselected package xml-core. 124s Preparing to unpack .../46-xml-core_0.19_all.deb ... 124s Unpacking xml-core (0.19) ... 124s Selecting previously unselected package w3c-sgml-lib. 124s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... 124s Unpacking w3c-sgml-lib (1.3-3) ... 124s Selecting previously unselected package python3-biopython. 124s Preparing to unpack .../48-python3-biopython_1.85+dfsg-4_ppc64el.deb ... 124s Unpacking python3-biopython (1.85+dfsg-4) ... 125s Selecting previously unselected package python3-biopython-sql. 125s Preparing to unpack .../49-python3-biopython-sql_1.85+dfsg-4_all.deb ... 125s Unpacking python3-biopython-sql (1.85+dfsg-4) ... 125s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 125s Setting up liblcms2-2:ppc64el (2.16-2) ... 125s Setting up libpixman-1-0:ppc64el (0.44.0-3) ... 125s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 125s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 125s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 125s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 125s Setting up python3-charset-normalizer (3.4.2-1) ... 125s Setting up x11-common (1:7.7+24ubuntu1) ... 125s Setting up libdeflate0:ppc64el (1.23-2) ... 125s Setting up python3-all (3.13.5-1) ... 125s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 125s Setting up libgomp1:ppc64el (15.1.0-8ubuntu1) ... 125s Setting up python3-freetype (2.5.1-1) ... 125s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 125s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 125s Setting up libblas3:ppc64el (3.12.1-2build1) ... 125s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 125s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 125s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 125s Setting up python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 125s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 125s Setting up libgfortran5:ppc64el (15.1.0-8ubuntu1) ... 125s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 125s Setting up libopenjp2-7:ppc64el (2.5.3-2) ... 125s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ... 125s Setting up sgml-base (1.31+nmu1) ... 125s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 125s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 125s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 125s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 125s Setting up liblapack3:ppc64el (3.12.1-2build1) ... 125s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 125s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 125s Setting up xfonts-utils (1:7.7+7) ... 125s Setting up libraqm0:ppc64el (0.10.2-1) ... 125s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 127s Setting up libjs-sphinxdoc (8.2.3-1ubuntu2) ... 127s Setting up python-biopython-doc (1.85+dfsg-4) ... 127s Setting up libtiff6:ppc64el (4.7.0-3ubuntu1) ... 127s Setting up xml-core (0.19) ... 127s Setting up fonts-urw-base35 (20200910-8) ... 128s Setting up python3-pil:ppc64el (11.1.0-5build1) ... 128s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 128s Setting up libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 128s Setting up libcairo2:ppc64el (1.18.4-1) ... 128s Setting up python3-cairo (1.27.0-2) ... 128s Setting up python3-rlpycairo (0.3.0-3) ... 128s Setting up python3-reportlab (4.4.2-1) ... 129s Processing triggers for libc-bin (2.41-6ubuntu2) ... 129s Processing triggers for man-db (2.13.1-1) ... 132s Processing triggers for sgml-base (1.31+nmu1) ... 132s Setting up w3c-sgml-lib (1.3-3) ... 160s Setting up python3-biopython (1.85+dfsg-4) ... 162s Setting up python3-biopython-sql (1.85+dfsg-4) ... 163s autopkgtest [03:42:59]: test dependencies: sh debian/tests/run-unit-test 163s autopkgtest [03:42:59]: test dependencies: [----------------------- 163s cp: cannot stat '/usr/share/libcifpp/mmcif_pdbx.dic': No such file or directory 163s cp: cannot stat '/usr/share/libcifpp/mmcif_ma.dic': No such file or directory 164s mkdir: created directory 'Bio' 164s mkdir: created directory 'Bio/Align' 164s mkdir: created directory 'Bio/Align/substitution_matrices' 164s mkdir: created directory 'Bio/Align/substitution_matrices/data/' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22' -> 'Bio/Align/substitution_matrices/data/BENNER22' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6' -> 'Bio/Align/substitution_matrices/data/BENNER6' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74' -> 'Bio/Align/substitution_matrices/data/BENNER74' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTN' -> 'Bio/Align/substitution_matrices/data/BLASTN' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTP' -> 'Bio/Align/substitution_matrices/data/BLASTP' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45' -> 'Bio/Align/substitution_matrices/data/BLOSUM45' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50' -> 'Bio/Align/substitution_matrices/data/BLOSUM50' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' -> 'Bio/Align/substitution_matrices/data/BLOSUM62' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80' -> 'Bio/Align/substitution_matrices/data/BLOSUM80' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90' -> 'Bio/Align/substitution_matrices/data/BLOSUM90' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF' -> 'Bio/Align/substitution_matrices/data/DAYHOFF' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG' -> 'Bio/Align/substitution_matrices/data/FENG' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC' -> 'Bio/Align/substitution_matrices/data/GENETIC' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992' -> 'Bio/Align/substitution_matrices/data/GONNET1992' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70' -> 'Bio/Align/substitution_matrices/data/HOXD70' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON' -> 'Bio/Align/substitution_matrices/data/JOHNSON' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES' -> 'Bio/Align/substitution_matrices/data/JONES' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN' -> 'Bio/Align/substitution_matrices/data/LEVIN' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN' -> 'Bio/Align/substitution_matrices/data/MCLACHLAN' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78' -> 'Bio/Align/substitution_matrices/data/MDM78' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MEGABLAST' -> 'Bio/Align/substitution_matrices/data/MEGABLAST' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4' -> 'Bio/Align/substitution_matrices/data/NUC.4.4' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250' -> 'Bio/Align/substitution_matrices/data/PAM250' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30' -> 'Bio/Align/substitution_matrices/data/PAM30' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70' -> 'Bio/Align/substitution_matrices/data/PAM70' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO' -> 'Bio/Align/substitution_matrices/data/RAO' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER' -> 'Bio/Align/substitution_matrices/data/RISLER' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER' -> 'Bio/Align/substitution_matrices/data/SCHNEIDER' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR' -> 'Bio/Align/substitution_matrices/data/STR' 164s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS' -> 'Bio/Align/substitution_matrices/data/TRANS' 165s test_Ace ... ok 165s test_Affy ... ok 168s test_AlignIO ... ok 168s test_AlignIO_ClustalIO ... ok 168s test_AlignIO_EmbossIO ... ok 168s test_AlignIO_FastaIO ... ok 168s test_AlignIO_MauveIO ... ok 168s test_AlignIO_PhylipIO ... ok 169s test_AlignIO_convert ... ok 169s test_AlignInfo ... ok 169s test_Align_Alignment ... ok 169s test_Align_a2m ... ok 169s test_Align_bed ... ok 169s test_Align_bigbed ... ok 170s test_Align_bigmaf ... ok 170s test_Align_bigpsl ... ok 170s test_Align_chain ... ok 170s test_Align_clustal ... ok 174s test_Align_codonalign ... ok 174s test_Align_emboss ... ok 174s test_Align_exonerate ... ok 174s test_Align_fasta ... ok 175s test_Align_hhr ... ok 176s test_Align_maf ... ok 176s test_Align_mauve ... ok 176s test_Align_msf ... ok 176s test_Align_nexus ... ok 176s test_Align_phylip ... ok 176s test_Align_psl ... ok 177s test_Align_sam ... ok 179s test_Align_stockholm ... ok 179s test_Align_tabular ... ok 179s test_Application ... ok 179s test_BioSQL_MySQLdb_online ... skipping. internet not available 179s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) 179s test_BioSQL_mysql_connector_online ... skipping. internet not available 179s test_BioSQL_psycopg2_online ... skipping. internet not available 184s test_BioSQL_sqlite3 ... ok 185s test_BioSQL_sqlite3_online ... skipping. internet not available 185s test_Blast_Record ... ok 185s test_Blast_parser ... ok 185s test_CAPS ... ok 185s test_Chi2 ... ok 185s test_ClustalOmega_tool ... skipping. Install clustalo if you want to use Clustal Omega from Biopython. 185s test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython. 185s test_Cluster ... ok 185s test_CodonTable ... ok 186s test_ColorSpiral ... ok 186s test_Compass ... ok 187s test_Consensus ... ok 187s test_Dialign_tool ... skipping. Install DIALIGN2-2 if you want to use the Bio.Align.Applications wrapper. 187s test_EMBL_unittest ... ok 187s test_Emboss ... skipping. $EMBOSS_ROOT='/usr/lib/emboss' which does not exist! 187s test_EmbossPrimer ... ok 191s test_Entrez ... ok 191s test_Entrez_online ... skipping. internet not available 192s test_Entrez_parser ... ok 192s test_Enzyme ... ok 192s test_ExPASy ... skipping. internet not available 192s test_Fasttree_tool ... skipping. Install FastTree and correctly set the file path to the program if you want to use it from Biopython. 192s test_File ... ok 192s test_GenBank ... /usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py:600: BiopythonWarning: Annotation 'Sequence Read Archive: SRX001885, SRX001121, SRX001531, SRX001530, SRX001529' too long 192s warnings.warn(f"Annotation {text!r} too long", BiopythonWarning) 192s ok 195s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' 197s ok 198s test_GraphicsChromosome ... ok 198s test_GraphicsDistribution ... ok 199s test_GraphicsGeneral ... ok 199s test_HMMCasino ... ok 199s test_HMMGeneral ... ok 199s test_KEGG ... ok 199s test_KEGG_online ... skipping. internet not available 205s test_KGML_graphics ... ok 205s test_KGML_graphics_online ... skipping. internet not available 205s test_KGML_nographics ... ok 205s test_KeyWList ... ok 205s test_LogisticRegression ... ok 207s test_MafIO_index ... ok 207s test_Mafft_tool ... skipping. Install MAFFT if you want to use the Bio.Align.Applications wrapper. 207s test_MarkovModel ... ok 207s test_Medline ... ok 207s test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. 208s test_NCBIXML ... Exception ignored in: 208s Traceback (most recent call last): 208s File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse 208s expat_parser.Parse(NULL, True) 208s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0 208s ok 208s test_NCBI_BLAST_tools ... skipping. Install the NCBI BLAST+ command line tools if you want to use the Bio.Blast.Applications wrapper. 208s test_NCBI_qblast ... ok 208s test_NMR ... ok 208s test_NaiveBayes ... ok 208s test_Nexus ... ok 208s test_PAML_baseml ... ok 209s test_PAML_codeml ... ok 209s test_PAML_yn00 ... ok 214s test_PDB_CEAligner ... ok 214s test_PDB_DSSP ... ok 214s test_PDB_Dice ... ok 214s test_PDB_Disordered ... ok 214s test_PDB_Exposure ... ok 214s test_PDB_FragmentMapper ... ok 217s test_PDB_KDTree ... ok 217s test_PDB_MMCIF2Dict ... ok 217s test_PDB_MMCIFIO ... ok 218s test_PDB_MMCIFParser ... ok 218s test_PDB_NACCESS ... ok 218s test_PDB_PDBIO ... ok 218s test_PDB_PDBList ... skipping. internet not available 225s test_PDB_PDBMLParser ... ok 225s test_PDB_PDBParser ... ok 225s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path 225s test_PDB_Polypeptide ... ok 226s test_PDB_QCPSuperimposer ... ok 229s test_PDB_SASA ... ok 230s test_PDB_SMCRA ... ok 230s test_PDB_Selection ... ok 230s test_PDB_StructureAlignment ... ok 230s test_PDB_Superimposer ... ok 230s test_PDB_alphafold_db ... skipping. internet not available 230s test_PDB_binary_cif ... skipping. Error: Install msgpack to use Bio.PDB.binaryCIF (e.g. pip install msgpack) 230s 230s test_PDB_internal_coords ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) 230s 230s test_PDB_parse_pdb_header ... ok 230s test_PDB_vectors ... ok 230s test_PQR ... ok 230s test_Pathway ... ok 231s test_Phd ... ok 231s test_Phylo ... ok 231s test_PhyloXML ... ok 231s test_Phylo_CDAO ... skipping. Install RDFlib if you want to use the CDAO tree format. 231s test_Phylo_NeXML ... ok 231s test_Phylo_igraph ... skipping. Install igraph if you wish to use it with Bio.Phylo 231s test_Phylo_matplotlib ... skipping. Install matplotlib if you want to use Bio.Phylo._utils. 231s test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo 232s test_PopGen_GenePop_nodepend ... ok 232s test_Prank_tool ... skipping. Install PRANK if you want to use the Bio.Align.Applications wrapper. 232s test_Probcons_tool ... skipping. Install PROBCONS if you want to use the Bio.Align.Applications wrapper. 232s test_ProtParam ... ok 232s test_RCSBFormats ... ok 232s test_Restriction ... ok 232s test_SCOP_Astral ... ok 232s test_SCOP_Cla ... ok 232s test_SCOP_Des ... ok 232s test_SCOP_Dom ... ok 232s test_SCOP_Hie ... ok 232s test_SCOP_Raf ... ok 232s test_SCOP_Residues ... ok 232s test_SCOP_Scop ... ok 232s test_SVDSuperimposer ... ok 232s test_SearchIO_blast_tab ... ok 233s test_SearchIO_blast_tab_index ... ok 233s test_SearchIO_blast_xml ... ok 234s test_SearchIO_blast_xml_index ... ok 234s test_SearchIO_blat_psl ... ok 234s test_SearchIO_blat_psl_index ... ok 234s test_SearchIO_exonerate ... ok 234s test_SearchIO_exonerate_text_index ... ok 234s test_SearchIO_exonerate_vulgar_index ... ok 234s test_SearchIO_fasta_m10 ... ok 234s test_SearchIO_fasta_m10_index ... ok 235s test_SearchIO_hhsuite2_text ... ok 235s test_SearchIO_hmmer2_text ... ok 235s test_SearchIO_hmmer2_text_index ... ok 235s test_SearchIO_hmmer3_domtab ... ok 235s test_SearchIO_hmmer3_domtab_index ... ok 235s test_SearchIO_hmmer3_tab ... ok 235s test_SearchIO_hmmer3_tab_index ... ok 235s test_SearchIO_hmmer3_text ... ok 235s test_SearchIO_hmmer3_text_index ... ok 235s test_SearchIO_interproscan_xml ... ok 235s test_SearchIO_model ... ok 235s test_SearchIO_write ... ok 236s test_SeqFeature ... ok 253s test_SeqIO ... ok 253s test_SeqIO_AbiIO ... ok 253s test_SeqIO_FastaIO ... ok 253s test_SeqIO_Gck ... ok 253s test_SeqIO_Gfa ... ok 253s test_SeqIO_Insdc ... ok 253s test_SeqIO_NibIO ... ok 255s test_SeqIO_PdbIO ... ok 255s test_SeqIO_QualityIO ... ok 255s test_SeqIO_SeqXML ... ok 255s test_SeqIO_SffIO ... ok 256s test_SeqIO_SnapGene ... ok 257s test_SeqIO_TwoBitIO ... ok 257s test_SeqIO_UniprotIO ... ok 257s test_SeqIO_Xdna ... ok 257s test_SeqIO_features ... ok 275s test_SeqIO_index ... ok 275s test_SeqIO_online ... skipping. internet not available 276s test_SeqIO_write ... ok 276s test_SeqRecord ... ok 276s test_SeqUtils ... ok 277s test_Seq_objs ... ok 277s test_SwissProt ... ok 277s test_TCoffee_tool ... skipping. Install TCOFFEE if you want to use the Bio.Align.Applications wrapper. 277s test_TogoWS ... skipping. internet not available 278s test_TreeConstruction ... ok 278s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file 278s test_UniGene ... ok 278s test_UniProt ... skipping. internet not available 278s test_UniProt_GOA ... ok 278s test_align ... ok 278s test_align_substitution_matrices ... ok 281s test_bgzf ... ok 281s test_cellosaurus ... ok 287s test_codonalign ... ok 287s test_geo ... ok 287s test_kNN ... ok 287s test_motifs ... ok 287s test_motifs_online ... skipping. internet not available 287s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 287s warnings.warn( 287s ok 287s test_pairwise2_no_C ... ok 287s test_pairwise_aligner ... ok 288s test_pairwise_alignment_map ... ok 295s test_phenotype ... ok 295s test_phenotype_fit ... skipping. Install SciPy if you want to use Bio.phenotype fit functionality. 295s test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. 295s test_prodoc ... ok 295s test_prosite ... ok 295s test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper. 295s test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython 296s test_seq ... ok 296s test_translate ... ok 296s Skipping any tests requiring internet access 296s Python version: 3.13.5 (main, Jun 25 2025, 18:55:22) [GCC 14.3.0] 296s Operating system: posix linux 296s ---------------------------------------------------------------------- 296s Ran 218 tests in 130.634 seconds 296s 296s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'> 296s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'> 296s autopkgtest [03:45:12]: test dependencies: -----------------------] 296s dependencies PASS 296s autopkgtest [03:45:12]: test dependencies: - - - - - - - - - - results - - - - - - - - - - 297s autopkgtest [03:45:13]: test full_suite: preparing testbed 302s Creating nova instance adt-questing-ppc64el-python-biopython-20250712-034016-juju-7f2275-prod-proposed-migration-environment-2-947f721e-2ac6-477e-8dc2-897d2a277921 from image adt/ubuntu-questing-ppc64el-server-20250712.img (UUID 059a70c2-c73c-4c03-a65e-958ca9af96a5)... 387s autopkgtest [03:46:43]: testbed dpkg architecture: ppc64el 387s autopkgtest [03:46:43]: testbed apt version: 3.1.3 387s autopkgtest [03:46:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 388s autopkgtest [03:46:44]: testbed release detected to be: questing 388s autopkgtest [03:46:44]: updating testbed package index (apt update) 388s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [249 kB] 388s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 389s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 389s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 389s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [39.9 kB] 389s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [207 kB] 389s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [15.4 kB] 389s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el Packages [58.9 kB] 389s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el Packages [166 kB] 389s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse ppc64el Packages [4452 B] 389s Fetched 741 kB in 1s (1454 kB/s) 390s Reading package lists... 390s autopkgtest [03:46:46]: upgrading testbed (apt dist-upgrade and autopurge) 390s Reading package lists... 390s Building dependency tree... 390s Reading state information... 391s Calculating upgrade... 391s The following packages will be upgraded: 391s htop 391s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 391s Need to get 230 kB of archives. 391s After this operation, 0 B of additional disk space will be used. 391s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el htop ppc64el 3.4.1-5 [230 kB] 391s Fetched 230 kB in 0s (9284 kB/s) 392s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117998 files and directories currently installed.) 392s Preparing to unpack .../htop_3.4.1-5_ppc64el.deb ... 392s Unpacking htop (3.4.1-5) over (3.4.1-4) ... 392s Setting up htop (3.4.1-5) ... 392s Processing triggers for man-db (2.13.1-1) ... 394s Reading package lists... 394s Building dependency tree... 394s Reading state information... 394s Solving dependencies... 394s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 397s Reading package lists... 397s Building dependency tree... 397s Reading state information... 397s Solving dependencies... 397s The following NEW packages will be installed: 397s autoconf automake autopoint autotools-dev blt build-essential bwa clustalo 397s cpp cpp-14 cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper 397s debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign 397s docutils-common dssp dwz emboss emboss-data emboss-lib fasttree flex 397s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 397s fonts-lato fonts-lmodern fonts-lyx fonts-urw-base35 g++ g++-14 397s g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 397s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext ghostscript 397s hevea hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16 397s intltool-debian libamd3 libaom3 libapache-pom-java libarchive-zip-perl 397s libargtable2-0 libarpack2t64 libasan8 libavahi-client3 libavahi-common-data 397s libavahi-common3 libblas3 libcairo2 libcc1-0 libcifpp-data libcifpp7 397s libcolamd3 libcommons-logging-java libcommons-parent-java libcups2t64 397s libde265-0 libdebhelper-perl libdeflate0 libexpat1-dev libfftw3-double3 397s libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 397s libgcc-14-dev libgd3 libgfortran5 libglpk40 libgomp1 libgraphite2-3 397s libgs-common libgs10 libgs10-common libharfbuzz0b libheif-plugin-aomdec 397s libheif-plugin-libde265 libheif1 libhpdf-2.3.0 libice6 libidn12 397s libigraph3t64 libijs-0.35 libimagequant0 libisl23 libitm1 libjbig0 397s libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 397s libjs-sphinxdoc libjs-underscore libjson-perl libkpathsea6 liblapack3 397s liblcms2-2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagickcore-7.q16-10 397s libmagickwand-7.q16-10 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 397s libmpfi0 libmysqlclient24 libnetpbm11t64 libopenjp2-7 libpaper-utils 397s libpaper2 libpdfbox-java libpixman-1-0 libplfit0 libpotrace0 libpq5 397s libptexenc1 libpython3-all-dev libpython3-dev libpython3.13-dev 397s libqhull-r8.0 libquadmath0 libraqm0 libraw23t64 libsharpyuv0 libsm6 397s libstdc++-14-dev libsuitesparseconfig7 libsynctex2 libtcl8.6 libteckit0 397s libtexlua53-5 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 397s libwebpdemux2 libwebpmux3 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 397s libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libzzip-0-13t64 m4 397s mafft mysql-common ncbi-blast+ ncbi-data netpbm phylip po-debconf 397s poppler-data prank preview-latex-style probcons python-biopython-doc 397s python-matplotlib-data python3-alabaster python3-all python3-all-dev 397s python3-biopython python3-biopython-sql python3-brotli python3-cairo 397s python3-charset-normalizer python3-contourpy python3-cycler 397s python3-decorator python3-defusedxml python3-dev python3-docutils 397s python3-fonttools python3-freetype python3-fs python3-igraph 397s python3-imagesize python3-kiwisolver python3-lxml python3-lz4 397s python3-matplotlib python3-mmtf python3-mpmath python3-msgpack 397s python3-mysqldb python3-networkx python3-numpy python3-numpy-dev 397s python3-numpydoc python3-pil python3-pil.imagetk python3-platformdirs 397s python3-rdflib python3-reportlab python3-rlpycairo python3-roman 397s python3-scipy python3-snowballstemmer python3-sphinx 397s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 397s python3-tabulate python3-texttable python3-tk python3-ufolib2 python3.13-dev 397s python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common t-coffee 397s t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended 397s texlive-latex-base texlive-latex-extra texlive-latex-recommended 397s texlive-pictures tk8.6-blt2.5 unicode-data w3c-sgml-lib wise wise-data 397s x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zlib1g-dev 397s 0 upgraded, 256 newly installed, 0 to remove and 0 not upgraded. 397s Need to get 424 MB of archives. 397s After this operation, 1913 MB of additional disk space will be used. 397s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el m4 ppc64el 1.4.19-8 [280 kB] 397s Get:2 http://ftpmaster.internal/ubuntu questing/main ppc64el flex ppc64el 2.6.4-8.2build1 [303 kB] 397s Get:3 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-lato all 2.015-1 [2781 kB] 397s Get:4 http://ftpmaster.internal/ubuntu questing/main ppc64el libgomp1 ppc64el 15.1.0-8ubuntu1 [169 kB] 397s Get:5 http://ftpmaster.internal/ubuntu questing/main ppc64el libfftw3-double3 ppc64el 3.3.10-2fakesync1build1 [443 kB] 397s Get:6 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 397s Get:7 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 397s Get:8 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 397s Get:9 http://ftpmaster.internal/ubuntu questing/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 397s Get:10 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 397s Get:11 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 397s Get:12 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 398s Get:13 http://ftpmaster.internal/ubuntu questing/main ppc64el fontconfig-config ppc64el 2.15.0-2.3ubuntu1 [38.1 kB] 398s Get:14 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontconfig1 ppc64el 2.15.0-2.3ubuntu1 [188 kB] 398s Get:15 http://ftpmaster.internal/ubuntu questing/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 398s Get:16 http://ftpmaster.internal/ubuntu questing/main ppc64el libaom3 ppc64el 3.12.1-1 [2942 kB] 398s Get:17 http://ftpmaster.internal/ubuntu questing/main ppc64el libheif-plugin-aomdec ppc64el 1.19.8-1 [11.7 kB] 398s Get:18 http://ftpmaster.internal/ubuntu questing/main ppc64el libde265-0 ppc64el 1.0.16-1 [288 kB] 398s Get:19 http://ftpmaster.internal/ubuntu questing/main ppc64el libheif-plugin-libde265 ppc64el 1.19.8-1 [9184 B] 398s Get:20 http://ftpmaster.internal/ubuntu questing/main ppc64el libheif1 ppc64el 1.19.8-1 [463 kB] 398s Get:21 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 398s Get:22 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 398s Get:23 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 398s Get:24 http://ftpmaster.internal/ubuntu questing/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 398s Get:25 http://ftpmaster.internal/ubuntu questing/universe ppc64el liblqr-1-0 ppc64el 0.4.2-2.1build2 [43.4 kB] 398s Get:26 http://ftpmaster.internal/ubuntu questing/main ppc64el libltdl7 ppc64el 2.5.4-4 [50.3 kB] 398s Get:27 http://ftpmaster.internal/ubuntu questing/main ppc64el libopenjp2-7 ppc64el 2.5.3-2 [248 kB] 398s Get:28 http://ftpmaster.internal/ubuntu questing/main ppc64el libraw23t64 ppc64el 0.21.4-2 [510 kB] 398s Get:29 http://ftpmaster.internal/ubuntu questing/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 398s Get:30 http://ftpmaster.internal/ubuntu questing/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 398s Get:31 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 398s Get:32 http://ftpmaster.internal/ubuntu questing/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu1 [283 kB] 398s Get:33 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 398s Get:34 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 398s Get:35 http://ftpmaster.internal/ubuntu questing/universe ppc64el imagemagick-7-common all 8:7.1.1.43+dfsg1-1ubuntu1 [69.5 kB] 398s Get:36 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmagickcore-7.q16-10 ppc64el 8:7.1.1.43+dfsg1-1ubuntu1 [2472 kB] 398s Get:37 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmagickwand-7.q16-10 ppc64el 8:7.1.1.43+dfsg1-1ubuntu1 [315 kB] 398s Get:38 http://ftpmaster.internal/ubuntu questing/main ppc64el poppler-data all 0.4.12-1 [2060 kB] 398s Get:39 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy-dev ppc64el 1:2.2.4+ds-1ubuntu1 [153 kB] 398s Get:40 http://ftpmaster.internal/ubuntu questing/main ppc64el libblas3 ppc64el 3.12.1-2build1 [239 kB] 398s Get:41 http://ftpmaster.internal/ubuntu questing/main ppc64el libgfortran5 ppc64el 15.1.0-8ubuntu1 [620 kB] 398s Get:42 http://ftpmaster.internal/ubuntu questing/main ppc64el liblapack3 ppc64el 3.12.1-2build1 [2817 kB] 398s Get:43 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy ppc64el 1:2.2.4+ds-1ubuntu1 [4887 kB] 398s Get:44 http://ftpmaster.internal/ubuntu questing/main ppc64el autoconf all 2.72-3.1ubuntu1 [384 kB] 398s Get:45 http://ftpmaster.internal/ubuntu questing/main ppc64el autotools-dev all 20240727.1 [43.4 kB] 398s Get:46 http://ftpmaster.internal/ubuntu questing/main ppc64el automake all 1:1.17-4ubuntu1 [572 kB] 398s Get:47 http://ftpmaster.internal/ubuntu questing/main ppc64el autopoint all 0.23.1-2build1 [619 kB] 398s Get:48 http://ftpmaster.internal/ubuntu questing/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB] 398s Get:49 http://ftpmaster.internal/ubuntu questing/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 398s Get:50 http://ftpmaster.internal/ubuntu questing/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 398s Get:51 http://ftpmaster.internal/ubuntu questing/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 398s Get:52 http://ftpmaster.internal/ubuntu questing/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB] 398s Get:53 http://ftpmaster.internal/ubuntu questing/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-8 [778 kB] 398s Get:54 http://ftpmaster.internal/ubuntu questing/main ppc64el blt ppc64el 2.5.3+dfsg-8 [4830 B] 398s Get:55 http://ftpmaster.internal/ubuntu questing/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 398s Get:56 http://ftpmaster.internal/ubuntu questing/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB] 398s Get:57 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.3.0-1ubuntu1 [10.5 MB] 398s Get:58 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-14 ppc64el 14.3.0-1ubuntu1 [1034 B] 398s Get:59 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B] 398s Get:60 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB] 398s Get:61 http://ftpmaster.internal/ubuntu questing/main ppc64el libcc1-0 ppc64el 15.1.0-8ubuntu1 [48.9 kB] 398s Get:62 http://ftpmaster.internal/ubuntu questing/main ppc64el libitm1 ppc64el 15.1.0-8ubuntu1 [32.3 kB] 398s Get:63 http://ftpmaster.internal/ubuntu questing/main ppc64el libasan8 ppc64el 15.1.0-8ubuntu1 [3006 kB] 399s Get:64 http://ftpmaster.internal/ubuntu questing/main ppc64el liblsan0 ppc64el 15.1.0-8ubuntu1 [1374 kB] 399s Get:65 http://ftpmaster.internal/ubuntu questing/main ppc64el libtsan2 ppc64el 15.1.0-8ubuntu1 [2729 kB] 399s Get:66 http://ftpmaster.internal/ubuntu questing/main ppc64el libubsan1 ppc64el 15.1.0-8ubuntu1 [1231 kB] 399s Get:67 http://ftpmaster.internal/ubuntu questing/main ppc64el libquadmath0 ppc64el 15.1.0-8ubuntu1 [160 kB] 399s Get:68 http://ftpmaster.internal/ubuntu questing/main ppc64el libgcc-14-dev ppc64el 14.3.0-1ubuntu1 [1616 kB] 399s Get:69 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.3.0-1ubuntu1 [20.6 MB] 399s Get:70 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-14 ppc64el 14.3.0-1ubuntu1 [549 kB] 399s Get:71 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B] 399s Get:72 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B] 399s Get:73 http://ftpmaster.internal/ubuntu questing/main ppc64el libstdc++-14-dev ppc64el 14.3.0-1ubuntu1 [3001 kB] 399s Get:74 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.3.0-1ubuntu1 [12.0 MB] 399s Get:75 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-14 ppc64el 14.3.0-1ubuntu1 [27.4 kB] 399s Get:76 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B] 399s Get:77 http://ftpmaster.internal/ubuntu questing/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B] 399s Get:78 http://ftpmaster.internal/ubuntu questing/main ppc64el build-essential ppc64el 12.12ubuntu1 [5094 B] 399s Get:79 http://ftpmaster.internal/ubuntu questing/universe ppc64el bwa ppc64el 0.7.18-1 [231 kB] 399s Get:80 http://ftpmaster.internal/ubuntu questing/universe ppc64el libargtable2-0 ppc64el 13-4 [18.5 kB] 399s Get:81 http://ftpmaster.internal/ubuntu questing/universe ppc64el clustalo ppc64el 1.2.4-8build1 [246 kB] 399s Get:82 http://ftpmaster.internal/ubuntu questing/main ppc64el libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB] 399s Get:83 http://ftpmaster.internal/ubuntu questing/main ppc64el libtool all 2.5.4-4 [168 kB] 399s Get:84 http://ftpmaster.internal/ubuntu questing/main ppc64el dh-autoreconf all 20 [16.1 kB] 399s Get:85 http://ftpmaster.internal/ubuntu questing/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] 399s Get:86 http://ftpmaster.internal/ubuntu questing/main ppc64el libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 399s Get:87 http://ftpmaster.internal/ubuntu questing/main ppc64el dh-strip-nondeterminism all 1.14.1-2 [5064 B] 399s Get:88 http://ftpmaster.internal/ubuntu questing/main ppc64el debugedit ppc64el 1:5.1-2 [52.4 kB] 399s Get:89 http://ftpmaster.internal/ubuntu questing/main ppc64el dwz ppc64el 0.15-1build6 [142 kB] 399s Get:90 http://ftpmaster.internal/ubuntu questing/main ppc64el gettext ppc64el 0.23.1-2build1 [1608 kB] 399s Get:91 http://ftpmaster.internal/ubuntu questing/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] 399s Get:92 http://ftpmaster.internal/ubuntu questing/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] 399s Get:93 http://ftpmaster.internal/ubuntu questing/main ppc64el debhelper all 13.24.2ubuntu1 [896 kB] 399s Get:94 http://ftpmaster.internal/ubuntu questing/universe ppc64el dh-python all 6.20250414 [119 kB] 400s Get:95 http://ftpmaster.internal/ubuntu questing/universe ppc64el dialign ppc64el 2.2.1-13 [158 kB] 400s Get:96 http://ftpmaster.internal/ubuntu questing/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 400s Get:97 http://ftpmaster.internal/ubuntu questing/main ppc64el xml-core all 0.19 [20.3 kB] 400s Get:98 http://ftpmaster.internal/ubuntu questing/main ppc64el docutils-common all 0.21.2+dfsg-2 [131 kB] 400s Get:99 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcifpp-data all 7.0.9-1 [481 kB] 400s Get:100 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcifpp7 ppc64el 7.0.9-1 [1127 kB] 400s Get:101 http://ftpmaster.internal/ubuntu questing/universe ppc64el dssp ppc64el 4.4.10-1 [793 kB] 400s Get:102 http://ftpmaster.internal/ubuntu questing/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 400s Get:103 http://ftpmaster.internal/ubuntu questing/main ppc64el libxpm4 ppc64el 1:3.5.17-1build2 [49.9 kB] 400s Get:104 http://ftpmaster.internal/ubuntu questing/main ppc64el libgd3 ppc64el 2.3.3-13ubuntu1 [165 kB] 400s Get:105 http://ftpmaster.internal/ubuntu questing/universe ppc64el libhpdf-2.3.0 ppc64el 2.3.0+dfsg-1build3 [460 kB] 400s Get:106 http://ftpmaster.internal/ubuntu questing/main ppc64el mysql-common all 5.8+1.1.1ubuntu1 [6922 B] 400s Get:107 http://ftpmaster.internal/ubuntu questing/main ppc64el libmysqlclient24 ppc64el 8.4.5-0ubuntu3 [1296 kB] 400s Get:108 http://ftpmaster.internal/ubuntu questing/main ppc64el libpq5 ppc64el 17.5-1build1 [285 kB] 400s Get:109 http://ftpmaster.internal/ubuntu questing/universe ppc64el emboss-lib ppc64el 6.6.0+dfsg-15ubuntu2 [3471 kB] 400s Get:110 http://ftpmaster.internal/ubuntu questing/universe ppc64el emboss-data all 6.6.0+dfsg-15ubuntu2 [61.0 MB] 401s Get:111 http://ftpmaster.internal/ubuntu questing/universe ppc64el emboss ppc64el 6.6.0+dfsg-15ubuntu2 [1044 kB] 401s Get:112 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 401s Get:113 http://ftpmaster.internal/ubuntu questing/universe ppc64el fonts-lmodern all 2.005-1 [4799 kB] 401s Get:114 http://ftpmaster.internal/ubuntu questing/universe ppc64el fonts-lyx all 2.4.3-1 [171 kB] 401s Get:115 http://ftpmaster.internal/ubuntu questing/main ppc64el libgs-common all 10.05.0dfsg1-0ubuntu1 [176 kB] 401s Get:116 http://ftpmaster.internal/ubuntu questing/main ppc64el libgs10-common all 10.05.0dfsg1-0ubuntu1 [490 kB] 401s Get:117 http://ftpmaster.internal/ubuntu questing/main ppc64el libavahi-common-data ppc64el 0.8-16ubuntu2 [31.0 kB] 401s Get:118 http://ftpmaster.internal/ubuntu questing/main ppc64el libavahi-common3 ppc64el 0.8-16ubuntu2 [25.9 kB] 401s Get:119 http://ftpmaster.internal/ubuntu questing/main ppc64el libavahi-client3 ppc64el 0.8-16ubuntu2 [30.9 kB] 401s Get:120 http://ftpmaster.internal/ubuntu questing/main ppc64el libcups2t64 ppc64el 2.4.12-0ubuntu1 [348 kB] 401s Get:121 http://ftpmaster.internal/ubuntu questing/main ppc64el libidn12 ppc64el 1.43-1 [63.5 kB] 401s Get:122 http://ftpmaster.internal/ubuntu questing/main ppc64el libijs-0.35 ppc64el 0.35-15.3 [16.8 kB] 401s Get:123 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig2dec0 ppc64el 0.20-1build3 [90.9 kB] 401s Get:124 http://ftpmaster.internal/ubuntu questing/main ppc64el libpaper2 ppc64el 2.2.5-0.3 [18.0 kB] 401s Get:125 http://ftpmaster.internal/ubuntu questing/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB] 401s Get:126 http://ftpmaster.internal/ubuntu questing/main ppc64el libsm6 ppc64el 2:1.2.6-1 [18.6 kB] 401s Get:127 http://ftpmaster.internal/ubuntu questing/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB] 401s Get:128 http://ftpmaster.internal/ubuntu questing/main ppc64el libgs10 ppc64el 10.05.0dfsg1-0ubuntu1 [5025 kB] 401s Get:129 http://ftpmaster.internal/ubuntu questing/main ppc64el ghostscript ppc64el 10.05.0dfsg1-0ubuntu1 [42.9 kB] 401s Get:130 http://ftpmaster.internal/ubuntu questing/universe ppc64el libnetpbm11t64 ppc64el 2:11.10.02-1build1 [141 kB] 401s Get:131 http://ftpmaster.internal/ubuntu questing/universe ppc64el netpbm ppc64el 2:11.10.02-1build1 [2594 kB] 401s Get:132 http://ftpmaster.internal/ubuntu questing/universe ppc64el tex-common all 6.19 [29.8 kB] 401s Get:133 http://ftpmaster.internal/ubuntu questing/main ppc64el libpaper-utils ppc64el 2.2.5-0.3 [15.6 kB] 401s Get:134 http://ftpmaster.internal/ubuntu questing/universe ppc64el libkpathsea6 ppc64el 2024.20240313.70630+ds-6 [72.3 kB] 401s Get:135 http://ftpmaster.internal/ubuntu questing/universe ppc64el libptexenc1 ppc64el 2024.20240313.70630+ds-6 [44.9 kB] 401s Get:136 http://ftpmaster.internal/ubuntu questing/universe ppc64el libsynctex2 ppc64el 2024.20240313.70630+ds-6 [68.2 kB] 401s Get:137 http://ftpmaster.internal/ubuntu questing/universe ppc64el libtexlua53-5 ppc64el 2024.20240313.70630+ds-6 [163 kB] 401s Get:138 http://ftpmaster.internal/ubuntu questing/main ppc64el t1utils ppc64el 1.41-4build3 [69.7 kB] 401s Get:139 http://ftpmaster.internal/ubuntu questing/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 401s Get:140 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 401s Get:141 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 401s Get:142 http://ftpmaster.internal/ubuntu questing/main ppc64el libcairo2 ppc64el 1.18.4-1 [746 kB] 401s Get:143 http://ftpmaster.internal/ubuntu questing/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 401s Get:144 http://ftpmaster.internal/ubuntu questing/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 401s Get:145 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmpfi0 ppc64el 1.5.4+ds-4 [38.6 kB] 401s Get:146 http://ftpmaster.internal/ubuntu questing/universe ppc64el libpotrace0 ppc64el 1.16-2build1 [23.0 kB] 401s Get:147 http://ftpmaster.internal/ubuntu questing/universe ppc64el libteckit0 ppc64el 2.5.12+ds1-1 [399 kB] 401s Get:148 http://ftpmaster.internal/ubuntu questing/main ppc64el libxmu6 ppc64el 2:1.1.3-3build2 [56.8 kB] 401s Get:149 http://ftpmaster.internal/ubuntu questing/main ppc64el libxaw7 ppc64el 2:1.0.16-1 [230 kB] 401s Get:150 http://ftpmaster.internal/ubuntu questing/main ppc64el libxi6 ppc64el 2:1.8.2-1 [37.9 kB] 401s Get:151 http://ftpmaster.internal/ubuntu questing/universe ppc64el libzzip-0-13t64 ppc64el 0.13.78+dfsg.1-0.1 [33.4 kB] 401s Get:152 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-binaries ppc64el 2024.20240313.70630+ds-6 [12.4 MB] 401s Get:153 http://ftpmaster.internal/ubuntu questing/main ppc64el xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 401s Get:154 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-base all 2024.20250309-1 [22.7 MB] 402s Get:155 http://ftpmaster.internal/ubuntu questing/main ppc64el hicolor-icon-theme all 0.18-2 [13.3 kB] 402s Get:156 http://ftpmaster.internal/ubuntu questing/universe ppc64el imagemagick-7.q16 ppc64el 8:7.1.1.43+dfsg1-1ubuntu1 [704 kB] 402s Get:157 http://ftpmaster.internal/ubuntu questing/universe ppc64el imagemagick ppc64el 8:7.1.1.43+dfsg1-1ubuntu1 [14.1 kB] 402s Get:158 http://ftpmaster.internal/ubuntu questing/universe ppc64el hevea ppc64el 2.36-2 [2153 kB] 402s Get:159 http://ftpmaster.internal/ubuntu questing/main ppc64el libsuitesparseconfig7 ppc64el 1:7.10.1+dfsg-1 [21.6 kB] 402s Get:160 http://ftpmaster.internal/ubuntu questing/universe ppc64el libamd3 ppc64el 1:7.10.1+dfsg-1 [44.8 kB] 402s Get:161 http://ftpmaster.internal/ubuntu questing/universe ppc64el libapache-pom-java all 33-2 [5874 B] 402s Get:162 http://ftpmaster.internal/ubuntu questing/universe ppc64el libarpack2t64 ppc64el 3.9.1-6 [107 kB] 402s Get:163 http://ftpmaster.internal/ubuntu questing/main ppc64el libcolamd3 ppc64el 1:7.10.1+dfsg-1 [29.8 kB] 402s Get:164 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcommons-parent-java all 56-1 [10.7 kB] 402s Get:165 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 402s Get:166 http://ftpmaster.internal/ubuntu questing/main ppc64el libexpat1-dev ppc64el 2.7.1-1 [151 kB] 402s Get:167 http://ftpmaster.internal/ubuntu questing/universe ppc64el libglpk40 ppc64el 5.0-1build2 [467 kB] 402s Get:168 http://ftpmaster.internal/ubuntu questing/universe ppc64el libplfit0 ppc64el 0.9.6+ds-2ubuntu1 [36.4 kB] 402s Get:169 http://ftpmaster.internal/ubuntu questing/universe ppc64el libigraph3t64 ppc64el 0.10.15+ds-3build1 [1167 kB] 402s Get:170 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 402s Get:171 http://ftpmaster.internal/ubuntu questing/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 402s Get:172 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 402s Get:173 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-sphinxdoc all 8.2.3-1ubuntu2 [28.0 kB] 402s Get:174 http://ftpmaster.internal/ubuntu questing/main ppc64el libjson-perl all 4.10000-1 [81.9 kB] 402s Get:175 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmbedcrypto16 ppc64el 3.6.2-3ubuntu1 [293 kB] 402s Get:176 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmbedx509-7 ppc64el 3.6.2-3ubuntu1 [40.1 kB] 402s Get:177 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmbedtls21 ppc64el 3.6.2-3ubuntu1 [135 kB] 402s Get:178 http://ftpmaster.internal/ubuntu questing/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB] 402s Get:179 http://ftpmaster.internal/ubuntu questing/main ppc64el libpython3.13-dev ppc64el 3.13.5-2 [6325 kB] 402s Get:180 http://ftpmaster.internal/ubuntu questing/main ppc64el libpython3-dev ppc64el 3.13.5-1 [10.8 kB] 402s Get:181 http://ftpmaster.internal/ubuntu questing/main ppc64el libpython3-all-dev ppc64el 3.13.5-1 [906 B] 402s Get:182 http://ftpmaster.internal/ubuntu questing/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 402s Get:183 http://ftpmaster.internal/ubuntu questing/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB] 402s Get:184 http://ftpmaster.internal/ubuntu questing/main ppc64el libxslt1.1 ppc64el 1.1.43-0exp1 [184 kB] 402s Get:185 http://ftpmaster.internal/ubuntu questing/universe ppc64el mafft ppc64el 7.505-1 [990 kB] 402s Get:186 http://ftpmaster.internal/ubuntu questing/universe ppc64el ncbi-data all 6.1.20170106+dfsg2-6 [3969 kB] 402s Get:187 http://ftpmaster.internal/ubuntu questing/universe ppc64el ncbi-blast+ ppc64el 2.16.0+ds-7 [16.1 MB] 403s Get:188 http://ftpmaster.internal/ubuntu questing/universe ppc64el phylip ppc64el 1:3.697+dfsg-4build1 [952 kB] 403s Get:189 http://ftpmaster.internal/ubuntu questing/universe ppc64el prank ppc64el 0.0.170427+dfsg-3 [353 kB] 403s Get:190 http://ftpmaster.internal/ubuntu questing/universe ppc64el preview-latex-style all 13.2-1.1 [347 kB] 403s Get:191 http://ftpmaster.internal/ubuntu questing/universe ppc64el probcons ppc64el 1.12-14 [174 kB] 403s Get:192 http://ftpmaster.internal/ubuntu questing/universe ppc64el python-biopython-doc all 1.85+dfsg-4 [18.2 MB] 403s Get:193 http://ftpmaster.internal/ubuntu questing/universe ppc64el python-matplotlib-data all 3.10.1+dfsg1-4 [2930 kB] 403s Get:194 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-all ppc64el 3.13.5-1 [882 B] 403s Get:195 http://ftpmaster.internal/ubuntu questing/main ppc64el python3.13-dev ppc64el 3.13.5-2 [508 kB] 403s Get:196 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-dev ppc64el 3.13.5-1 [26.6 kB] 403s Get:197 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-all-dev ppc64el 3.13.5-1 [900 B] 403s Get:198 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-charset-normalizer ppc64el 3.4.2-1 [132 kB] 403s Get:199 http://ftpmaster.internal/ubuntu questing/main ppc64el python3.13-tk ppc64el 3.13.5-2 [108 kB] 403s Get:200 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-tk ppc64el 3.13.4-1 [9886 B] 403s Get:201 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-pil.imagetk ppc64el 11.1.0-5build1 [10.3 kB] 403s Get:202 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-pil ppc64el 11.1.0-5build1 [601 kB] 403s Get:203 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-cairo ppc64el 1.27.0-2 [129 kB] 403s Get:204 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 403s Get:205 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 403s Get:206 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el python3-reportlab all 4.4.2-1 [1145 kB] 403s Get:207 http://ftpmaster.internal/ubuntu questing/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 403s Get:208 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython ppc64el 1.85+dfsg-4 [1764 kB] 403s Get:209 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython-sql all 1.85+dfsg-4 [26.4 kB] 403s Get:210 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-brotli ppc64el 1.1.0-2build4 [422 kB] 403s Get:211 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-contourpy ppc64el 1.3.1-1build1 [218 kB] 403s Get:212 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 403s Get:213 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 403s Get:214 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-defusedxml all 0.7.1-3 [42.2 kB] 403s Get:215 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-roman all 5.0-1 [10.3 kB] 403s Get:216 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-docutils all 0.21.2+dfsg-2 [409 kB] 403s Get:217 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-platformdirs all 4.3.7-1 [16.9 kB] 403s Get:218 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-fs all 2.4.16-7 [90.8 kB] 403s Get:219 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-lxml ppc64el 5.4.0-1build1 [1432 kB] 403s Get:220 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-lz4 ppc64el 4.4.0+dfsg-2 [28.1 kB] 403s Get:221 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-scipy ppc64el 1.15.3-1 [18.2 MB] 403s Get:222 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 403s Get:223 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-sympy all 1.13.3-5 [4229 kB] 404s Get:224 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 404s Get:225 http://ftpmaster.internal/ubuntu questing/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 404s Get:226 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-fonttools ppc64el 4.55.3-2build1 [1521 kB] 404s Get:227 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-imagesize all 1.4.1-1 [6844 B] 404s Get:228 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3build1 [59.5 kB] 404s Get:229 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-matplotlib ppc64el 3.10.1+dfsg1-4 [18.1 MB] 404s Get:230 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-msgpack ppc64el 1.0.3-3build4 [89.5 kB] 404s Get:231 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-mmtf all 1.1.3-1 [16.2 kB] 404s Get:232 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-mysqldb ppc64el 1.4.6-2build6 [50.4 kB] 404s Get:233 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 404s Get:234 http://ftpmaster.internal/ubuntu questing/main ppc64el sphinx-common all 8.2.3-1ubuntu2 [656 kB] 404s Get:235 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-alabaster all 0.7.16-0.1 [18.5 kB] 404s Get:236 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 404s Get:237 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-sphinx all 8.2.3-1ubuntu2 [482 kB] 404s Get:238 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-tabulate all 0.9.0-1 [45.3 kB] 404s Get:239 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-numpydoc all 1.8.0-2 [52.4 kB] 404s Get:240 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-rdflib all 7.1.1-3 [427 kB] 404s Get:241 http://ftpmaster.internal/ubuntu questing/main ppc64el sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1013 kB] 404s Get:242 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 404s Get:243 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [23.5 kB] 404s Get:244 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-texttable all 1.7.0-1 [11.2 kB] 404s Get:245 http://ftpmaster.internal/ubuntu questing/universe ppc64el t-coffee ppc64el 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1022 kB] 404s Get:246 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-fonts-recommended all 2024.20250309-1 [4974 kB] 405s Get:247 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-latex-base all 2024.20250309-1 [1276 kB] 405s Get:248 http://ftpmaster.internal/ubuntu questing/universe ppc64el libfontbox-java all 1:1.8.16-5 [208 kB] 405s Get:249 http://ftpmaster.internal/ubuntu questing/universe ppc64el libpdfbox-java all 1:1.8.16-5 [5521 kB] 405s Get:250 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-latex-recommended all 2024.20250309-1 [8727 kB] 405s Get:251 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-pictures all 2024.20250309-1 [17.0 MB] 405s Get:252 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-latex-extra all 2024.20250309-2 [24.8 MB] 405s Get:253 http://ftpmaster.internal/ubuntu questing/universe ppc64el wise-data all 2.4.1-27 [83.2 kB] 405s Get:254 http://ftpmaster.internal/ubuntu questing/universe ppc64el wise ppc64el 2.4.1-27 [1066 kB] 406s Get:255 http://ftpmaster.internal/ubuntu questing/universe ppc64el fasttree ppc64el 2.1.11-2 [218 kB] 406s Get:256 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-igraph ppc64el 0.11.8+ds-1build1 [360 kB] 406s Preconfiguring packages ... 406s Fetched 424 MB in 9s (48.7 MB/s) 406s Selecting previously unselected package m4. 406s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117998 files and directories currently installed.) 406s Preparing to unpack .../000-m4_1.4.19-8_ppc64el.deb ... 406s Unpacking m4 (1.4.19-8) ... 406s Selecting previously unselected package flex. 406s Preparing to unpack .../001-flex_2.6.4-8.2build1_ppc64el.deb ... 406s Unpacking flex (2.6.4-8.2build1) ... 406s Selecting previously unselected package fonts-lato. 406s Preparing to unpack .../002-fonts-lato_2.015-1_all.deb ... 406s Unpacking fonts-lato (2.015-1) ... 407s Selecting previously unselected package libgomp1:ppc64el. 407s Preparing to unpack .../003-libgomp1_15.1.0-8ubuntu1_ppc64el.deb ... 407s Unpacking libgomp1:ppc64el (15.1.0-8ubuntu1) ... 407s Selecting previously unselected package libfftw3-double3:ppc64el. 407s Preparing to unpack .../004-libfftw3-double3_3.3.10-2fakesync1build1_ppc64el.deb ... 407s Unpacking libfftw3-double3:ppc64el (3.3.10-2fakesync1build1) ... 407s Selecting previously unselected package fonts-dejavu-mono. 407s Preparing to unpack .../005-fonts-dejavu-mono_2.37-8_all.deb ... 407s Unpacking fonts-dejavu-mono (2.37-8) ... 407s Selecting previously unselected package fonts-dejavu-core. 407s Preparing to unpack .../006-fonts-dejavu-core_2.37-8_all.deb ... 407s Unpacking fonts-dejavu-core (2.37-8) ... 407s Selecting previously unselected package libfontenc1:ppc64el. 407s Preparing to unpack .../007-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 407s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 407s Selecting previously unselected package x11-common. 407s Preparing to unpack .../008-x11-common_1%3a7.7+24ubuntu1_all.deb ... 407s Unpacking x11-common (1:7.7+24ubuntu1) ... 407s Selecting previously unselected package xfonts-encodings. 407s Preparing to unpack .../009-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 407s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 407s Selecting previously unselected package xfonts-utils. 407s Preparing to unpack .../010-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 407s Unpacking xfonts-utils (1:7.7+7) ... 407s Selecting previously unselected package fonts-urw-base35. 407s Preparing to unpack .../011-fonts-urw-base35_20200910-8_all.deb ... 407s Unpacking fonts-urw-base35 (20200910-8) ... 407s Selecting previously unselected package fontconfig-config. 407s Preparing to unpack .../012-fontconfig-config_2.15.0-2.3ubuntu1_ppc64el.deb ... 407s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 407s Selecting previously unselected package libfontconfig1:ppc64el. 407s Preparing to unpack .../013-libfontconfig1_2.15.0-2.3ubuntu1_ppc64el.deb ... 407s Unpacking libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 407s Selecting previously unselected package libsharpyuv0:ppc64el. 407s Preparing to unpack .../014-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 407s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 407s Selecting previously unselected package libaom3:ppc64el. 407s Preparing to unpack .../015-libaom3_3.12.1-1_ppc64el.deb ... 407s Unpacking libaom3:ppc64el (3.12.1-1) ... 407s Selecting previously unselected package libheif-plugin-aomdec:ppc64el. 407s Preparing to unpack .../016-libheif-plugin-aomdec_1.19.8-1_ppc64el.deb ... 407s Unpacking libheif-plugin-aomdec:ppc64el (1.19.8-1) ... 407s Selecting previously unselected package libde265-0:ppc64el. 407s Preparing to unpack .../017-libde265-0_1.0.16-1_ppc64el.deb ... 407s Unpacking libde265-0:ppc64el (1.0.16-1) ... 407s Selecting previously unselected package libheif-plugin-libde265:ppc64el. 407s Preparing to unpack .../018-libheif-plugin-libde265_1.19.8-1_ppc64el.deb ... 407s Unpacking libheif-plugin-libde265:ppc64el (1.19.8-1) ... 407s Selecting previously unselected package libheif1:ppc64el. 407s Preparing to unpack .../019-libheif1_1.19.8-1_ppc64el.deb ... 407s Unpacking libheif1:ppc64el (1.19.8-1) ... 407s Selecting previously unselected package libjbig0:ppc64el. 407s Preparing to unpack .../020-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 407s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 407s Selecting previously unselected package libjpeg-turbo8:ppc64el. 407s Preparing to unpack .../021-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 407s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 407s Selecting previously unselected package libjpeg8:ppc64el. 407s Preparing to unpack .../022-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 407s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 408s Selecting previously unselected package liblcms2-2:ppc64el. 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Unpacking libdeflate0:ppc64el (1.23-2) ... 408s Selecting previously unselected package liblerc4:ppc64el. 408s Preparing to unpack .../029-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 408s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 408s Selecting previously unselected package libwebp7:ppc64el. 408s Preparing to unpack .../030-libwebp7_1.5.0-0.1_ppc64el.deb ... 408s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 408s Selecting previously unselected package libtiff6:ppc64el. 408s Preparing to unpack .../031-libtiff6_4.7.0-3ubuntu1_ppc64el.deb ... 408s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu1) ... 408s Selecting previously unselected package libwebpdemux2:ppc64el. 408s Preparing to unpack .../032-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 408s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 408s Selecting previously unselected package libwebpmux3:ppc64el. 408s Preparing to unpack .../033-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 408s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 408s Selecting previously unselected package imagemagick-7-common. 408s Preparing to unpack .../034-imagemagick-7-common_8%3a7.1.1.43+dfsg1-1ubuntu1_all.deb ... 408s Unpacking imagemagick-7-common (8:7.1.1.43+dfsg1-1ubuntu1) ... 408s Selecting previously unselected package libmagickcore-7.q16-10:ppc64el. 408s Preparing to unpack .../035-libmagickcore-7.q16-10_8%3a7.1.1.43+dfsg1-1ubuntu1_ppc64el.deb ... 408s Unpacking libmagickcore-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1ubuntu1) ... 408s Selecting previously unselected package libmagickwand-7.q16-10:ppc64el. 408s Preparing to unpack .../036-libmagickwand-7.q16-10_8%3a7.1.1.43+dfsg1-1ubuntu1_ppc64el.deb ... 408s Unpacking libmagickwand-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1ubuntu1) ... 408s Selecting previously unselected package poppler-data. 408s Preparing to unpack .../037-poppler-data_0.4.12-1_all.deb ... 408s Unpacking poppler-data (0.4.12-1) ... 408s Selecting previously unselected package python3-numpy-dev:ppc64el. 408s Preparing to unpack .../038-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 408s Unpacking python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 408s Selecting previously unselected package libblas3:ppc64el. 408s Preparing to unpack .../039-libblas3_3.12.1-2build1_ppc64el.deb ... 408s Unpacking libblas3:ppc64el (3.12.1-2build1) ... 408s Selecting previously unselected package libgfortran5:ppc64el. 408s Preparing to unpack .../040-libgfortran5_15.1.0-8ubuntu1_ppc64el.deb ... 408s Unpacking libgfortran5:ppc64el (15.1.0-8ubuntu1) ... 408s Selecting previously unselected package liblapack3:ppc64el. 408s Preparing to unpack .../041-liblapack3_3.12.1-2build1_ppc64el.deb ... 408s Unpacking liblapack3:ppc64el (3.12.1-2build1) ... 408s Selecting previously unselected package python3-numpy. 408s Preparing to unpack .../042-python3-numpy_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 408s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 408s Selecting previously unselected package autoconf. 408s Preparing to unpack .../043-autoconf_2.72-3.1ubuntu1_all.deb ... 408s Unpacking autoconf (2.72-3.1ubuntu1) ... 408s Selecting previously unselected package autotools-dev. 408s Preparing to unpack .../044-autotools-dev_20240727.1_all.deb ... 408s Unpacking autotools-dev (20240727.1) ... 408s Selecting previously unselected package automake. 408s Preparing to unpack .../045-automake_1%3a1.17-4ubuntu1_all.deb ... 408s Unpacking automake (1:1.17-4ubuntu1) ... 408s Selecting previously unselected package autopoint. 408s Preparing to unpack .../046-autopoint_0.23.1-2build1_all.deb ... 408s Unpacking autopoint (0.23.1-2build1) ... 408s Selecting previously unselected package libtcl8.6:ppc64el. 408s Preparing to unpack .../047-libtcl8.6_8.6.16+dfsg-1_ppc64el.deb ... 408s Unpacking libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 408s Selecting previously unselected package libxrender1:ppc64el. 408s Preparing to unpack .../048-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 408s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 409s Selecting previously unselected package libxft2:ppc64el. 409s Preparing to unpack .../049-libxft2_2.3.6-1build1_ppc64el.deb ... 409s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 409s Selecting previously unselected package libxss1:ppc64el. 409s Preparing to unpack .../050-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 409s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 409s Selecting previously unselected package libtk8.6:ppc64el. 409s Preparing to unpack .../051-libtk8.6_8.6.16-1_ppc64el.deb ... 409s Unpacking libtk8.6:ppc64el (8.6.16-1) ... 409s Selecting previously unselected package tk8.6-blt2.5. 409s Preparing to unpack .../052-tk8.6-blt2.5_2.5.3+dfsg-8_ppc64el.deb ... 409s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 409s Selecting previously unselected package blt. 409s Preparing to unpack .../053-blt_2.5.3+dfsg-8_ppc64el.deb ... 409s Unpacking blt (2.5.3+dfsg-8) ... 409s Selecting previously unselected package libisl23:ppc64el. 409s Preparing to unpack .../054-libisl23_0.27-1_ppc64el.deb ... 409s Unpacking libisl23:ppc64el (0.27-1) ... 409s Selecting previously unselected package libmpc3:ppc64el. 409s Preparing to unpack .../055-libmpc3_1.3.1-1build2_ppc64el.deb ... 409s Unpacking libmpc3:ppc64el (1.3.1-1build2) ... 409s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu. 409s Preparing to unpack .../056-cpp-14-powerpc64le-linux-gnu_14.3.0-1ubuntu1_ppc64el.deb ... 409s Unpacking cpp-14-powerpc64le-linux-gnu (14.3.0-1ubuntu1) ... 409s Selecting previously unselected package cpp-14. 409s Preparing to unpack .../057-cpp-14_14.3.0-1ubuntu1_ppc64el.deb ... 409s Unpacking cpp-14 (14.3.0-1ubuntu1) ... 409s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 409s Preparing to unpack .../058-cpp-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 409s Unpacking cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 409s Selecting previously unselected package cpp. 409s Preparing to unpack .../059-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 409s Unpacking cpp (4:14.2.0-1ubuntu1) ... 409s Selecting previously unselected package libcc1-0:ppc64el. 409s Preparing to unpack .../060-libcc1-0_15.1.0-8ubuntu1_ppc64el.deb ... 409s Unpacking libcc1-0:ppc64el (15.1.0-8ubuntu1) ... 409s Selecting previously unselected package libitm1:ppc64el. 409s Preparing to unpack .../061-libitm1_15.1.0-8ubuntu1_ppc64el.deb ... 409s Unpacking libitm1:ppc64el (15.1.0-8ubuntu1) ... 409s Selecting previously unselected package libasan8:ppc64el. 409s Preparing to unpack .../062-libasan8_15.1.0-8ubuntu1_ppc64el.deb ... 409s Unpacking libasan8:ppc64el (15.1.0-8ubuntu1) ... 409s Selecting previously unselected package liblsan0:ppc64el. 409s Preparing to unpack .../063-liblsan0_15.1.0-8ubuntu1_ppc64el.deb ... 409s Unpacking liblsan0:ppc64el (15.1.0-8ubuntu1) ... 409s Selecting previously unselected package libtsan2:ppc64el. 409s Preparing to unpack .../064-libtsan2_15.1.0-8ubuntu1_ppc64el.deb ... 409s Unpacking libtsan2:ppc64el (15.1.0-8ubuntu1) ... 409s Selecting previously unselected package libubsan1:ppc64el. 409s Preparing to unpack .../065-libubsan1_15.1.0-8ubuntu1_ppc64el.deb ... 409s Unpacking libubsan1:ppc64el (15.1.0-8ubuntu1) ... 409s Selecting previously unselected package libquadmath0:ppc64el. 409s Preparing to unpack .../066-libquadmath0_15.1.0-8ubuntu1_ppc64el.deb ... 409s Unpacking libquadmath0:ppc64el (15.1.0-8ubuntu1) ... 409s Selecting previously unselected package libgcc-14-dev:ppc64el. 409s Preparing to unpack .../067-libgcc-14-dev_14.3.0-1ubuntu1_ppc64el.deb ... 409s Unpacking libgcc-14-dev:ppc64el (14.3.0-1ubuntu1) ... 409s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu. 409s Preparing to unpack .../068-gcc-14-powerpc64le-linux-gnu_14.3.0-1ubuntu1_ppc64el.deb ... 409s Unpacking gcc-14-powerpc64le-linux-gnu (14.3.0-1ubuntu1) ... 410s Selecting previously unselected package gcc-14. 410s Preparing to unpack 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Preparing to unpack .../074-g++-14_14.3.0-1ubuntu1_ppc64el.deb ... 410s Unpacking g++-14 (14.3.0-1ubuntu1) ... 410s Selecting previously unselected package g++-powerpc64le-linux-gnu. 410s Preparing to unpack .../075-g++-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 410s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 410s Selecting previously unselected package g++. 410s Preparing to unpack .../076-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 410s Unpacking g++ (4:14.2.0-1ubuntu1) ... 410s Selecting previously unselected package build-essential. 410s Preparing to unpack .../077-build-essential_12.12ubuntu1_ppc64el.deb ... 410s Unpacking build-essential (12.12ubuntu1) ... 410s Selecting previously unselected package bwa. 410s Preparing to unpack .../078-bwa_0.7.18-1_ppc64el.deb ... 410s Unpacking bwa (0.7.18-1) ... 411s Selecting previously unselected package libargtable2-0:ppc64el. 411s Preparing to unpack .../079-libargtable2-0_13-4_ppc64el.deb ... 411s Unpacking libargtable2-0:ppc64el (13-4) ... 411s Selecting previously unselected package clustalo. 411s Preparing to unpack .../080-clustalo_1.2.4-8build1_ppc64el.deb ... 411s Unpacking clustalo (1.2.4-8build1) ... 411s Selecting previously unselected package libdebhelper-perl. 411s Preparing to unpack .../081-libdebhelper-perl_13.24.2ubuntu1_all.deb ... 411s Unpacking libdebhelper-perl (13.24.2ubuntu1) ... 411s Selecting previously unselected package libtool. 411s Preparing to unpack .../082-libtool_2.5.4-4_all.deb ... 411s Unpacking libtool (2.5.4-4) ... 411s Selecting previously unselected package dh-autoreconf. 411s Preparing to unpack .../083-dh-autoreconf_20_all.deb ... 411s Unpacking dh-autoreconf (20) ... 411s Selecting previously unselected package libarchive-zip-perl. 411s Preparing to unpack .../084-libarchive-zip-perl_1.68-1_all.deb ... 411s Unpacking libarchive-zip-perl (1.68-1) ... 411s Selecting previously unselected package libfile-stripnondeterminism-perl. 411s Preparing to unpack .../085-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 411s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 411s Selecting previously unselected package dh-strip-nondeterminism. 411s Preparing to unpack .../086-dh-strip-nondeterminism_1.14.1-2_all.deb ... 411s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 411s Selecting previously unselected package debugedit. 411s Preparing to unpack .../087-debugedit_1%3a5.1-2_ppc64el.deb ... 411s Unpacking debugedit (1:5.1-2) ... 411s Selecting previously unselected package dwz. 411s Preparing to unpack .../088-dwz_0.15-1build6_ppc64el.deb ... 411s Unpacking dwz (0.15-1build6) ... 411s Selecting previously unselected package gettext. 411s Preparing to unpack .../089-gettext_0.23.1-2build1_ppc64el.deb ... 411s Unpacking gettext (0.23.1-2build1) ... 411s Selecting previously unselected package intltool-debian. 411s Preparing to unpack .../090-intltool-debian_0.35.0+20060710.6_all.deb ... 411s Unpacking intltool-debian (0.35.0+20060710.6) ... 411s Selecting previously unselected package po-debconf. 411s Preparing to unpack .../091-po-debconf_1.0.21+nmu1_all.deb ... 411s Unpacking po-debconf (1.0.21+nmu1) ... 411s Selecting previously unselected package debhelper. 411s Preparing to unpack .../092-debhelper_13.24.2ubuntu1_all.deb ... 411s Unpacking debhelper (13.24.2ubuntu1) ... 412s Selecting previously unselected package dh-python. 412s Preparing to unpack .../093-dh-python_6.20250414_all.deb ... 412s Unpacking dh-python (6.20250414) ... 412s Selecting previously unselected package dialign. 412s Preparing to unpack .../094-dialign_2.2.1-13_ppc64el.deb ... 412s Unpacking dialign (2.2.1-13) ... 412s Selecting previously unselected package sgml-base. 412s Preparing to unpack .../095-sgml-base_1.31+nmu1_all.deb ... 412s Unpacking sgml-base (1.31+nmu1) ... 412s Selecting previously unselected package xml-core. 412s Preparing to unpack .../096-xml-core_0.19_all.deb ... 412s Unpacking xml-core (0.19) ... 412s Selecting previously unselected package docutils-common. 412s Preparing to unpack .../097-docutils-common_0.21.2+dfsg-2_all.deb ... 412s Unpacking docutils-common (0.21.2+dfsg-2) ... 412s Selecting previously unselected package libcifpp-data. 412s Preparing to unpack .../098-libcifpp-data_7.0.9-1_all.deb ... 412s Unpacking libcifpp-data (7.0.9-1) ... 412s Selecting previously unselected package libcifpp7:ppc64el. 412s Preparing to unpack .../099-libcifpp7_7.0.9-1_ppc64el.deb ... 412s Unpacking libcifpp7:ppc64el (7.0.9-1) ... 412s Selecting previously unselected package dssp. 412s Preparing to unpack .../100-dssp_4.4.10-1_ppc64el.deb ... 412s Unpacking dssp (4.4.10-1) ... 412s Selecting previously unselected package libimagequant0:ppc64el. 412s Preparing to unpack .../101-libimagequant0_2.18.0-1build1_ppc64el.deb ... 412s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 412s Selecting previously unselected package libxpm4:ppc64el. 412s Preparing to unpack .../102-libxpm4_1%3a3.5.17-1build2_ppc64el.deb ... 412s Unpacking libxpm4:ppc64el (1:3.5.17-1build2) ... 412s Selecting previously unselected package libgd3:ppc64el. 412s Preparing to unpack .../103-libgd3_2.3.3-13ubuntu1_ppc64el.deb ... 412s Unpacking libgd3:ppc64el (2.3.3-13ubuntu1) ... 412s Selecting previously unselected package libhpdf-2.3.0:ppc64el. 412s Preparing to unpack .../104-libhpdf-2.3.0_2.3.0+dfsg-1build3_ppc64el.deb ... 412s Unpacking libhpdf-2.3.0:ppc64el (2.3.0+dfsg-1build3) ... 412s Selecting previously unselected package mysql-common. 412s Preparing to unpack .../105-mysql-common_5.8+1.1.1ubuntu1_all.deb ... 412s Unpacking mysql-common (5.8+1.1.1ubuntu1) ... 412s Selecting previously unselected package libmysqlclient24:ppc64el. 412s Preparing to unpack .../106-libmysqlclient24_8.4.5-0ubuntu3_ppc64el.deb ... 412s Unpacking libmysqlclient24:ppc64el (8.4.5-0ubuntu3) ... 412s Selecting previously unselected package libpq5:ppc64el. 412s Preparing to unpack .../107-libpq5_17.5-1build1_ppc64el.deb ... 412s Unpacking libpq5:ppc64el (17.5-1build1) ... 412s Selecting previously unselected package emboss-lib. 412s Preparing to unpack .../108-emboss-lib_6.6.0+dfsg-15ubuntu2_ppc64el.deb ... 412s Unpacking emboss-lib (6.6.0+dfsg-15ubuntu2) ... 412s Selecting previously unselected package emboss-data. 412s Preparing to unpack .../109-emboss-data_6.6.0+dfsg-15ubuntu2_all.deb ... 412s Unpacking emboss-data (6.6.0+dfsg-15ubuntu2) ... 416s Selecting previously unselected package emboss. 416s Preparing to unpack .../110-emboss_6.6.0+dfsg-15ubuntu2_ppc64el.deb ... 416s Unpacking emboss (6.6.0+dfsg-15ubuntu2) ... 417s Selecting previously unselected package fonts-font-awesome. 417s Preparing to unpack .../111-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 417s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 417s Selecting previously unselected package fonts-lmodern. 417s Preparing to unpack .../112-fonts-lmodern_2.005-1_all.deb ... 417s Unpacking fonts-lmodern (2.005-1) ... 417s Selecting previously unselected package fonts-lyx. 417s Preparing to unpack .../113-fonts-lyx_2.4.3-1_all.deb ... 417s Unpacking fonts-lyx (2.4.3-1) ... 417s Selecting previously unselected package libgs-common. 417s Preparing to unpack .../114-libgs-common_10.05.0dfsg1-0ubuntu1_all.deb ... 417s Unpacking libgs-common (10.05.0dfsg1-0ubuntu1) ... 417s Selecting previously unselected package libgs10-common. 417s Preparing to unpack .../115-libgs10-common_10.05.0dfsg1-0ubuntu1_all.deb ... 417s Unpacking libgs10-common (10.05.0dfsg1-0ubuntu1) ... 418s Selecting previously unselected package libavahi-common-data:ppc64el. 418s Preparing to unpack .../116-libavahi-common-data_0.8-16ubuntu2_ppc64el.deb ... 418s Unpacking libavahi-common-data:ppc64el (0.8-16ubuntu2) ... 418s Selecting previously unselected package libavahi-common3:ppc64el. 418s Preparing to unpack .../117-libavahi-common3_0.8-16ubuntu2_ppc64el.deb ... 418s Unpacking libavahi-common3:ppc64el (0.8-16ubuntu2) ... 418s Selecting previously unselected package libavahi-client3:ppc64el. 418s Preparing to unpack .../118-libavahi-client3_0.8-16ubuntu2_ppc64el.deb ... 418s Unpacking libavahi-client3:ppc64el (0.8-16ubuntu2) ... 418s Selecting previously unselected package libcups2t64:ppc64el. 418s Preparing to unpack .../119-libcups2t64_2.4.12-0ubuntu1_ppc64el.deb ... 418s Unpacking libcups2t64:ppc64el (2.4.12-0ubuntu1) ... 418s Selecting previously unselected package libidn12:ppc64el. 418s Preparing to unpack .../120-libidn12_1.43-1_ppc64el.deb ... 418s Unpacking libidn12:ppc64el (1.43-1) ... 418s Selecting previously unselected package libijs-0.35:ppc64el. 418s Preparing to unpack .../121-libijs-0.35_0.35-15.3_ppc64el.deb ... 418s Unpacking libijs-0.35:ppc64el (0.35-15.3) ... 418s Selecting previously unselected package libjbig2dec0:ppc64el. 418s Preparing to unpack .../122-libjbig2dec0_0.20-1build3_ppc64el.deb ... 418s Unpacking libjbig2dec0:ppc64el (0.20-1build3) ... 418s Selecting previously unselected package libpaper2:ppc64el. 418s Preparing to unpack .../123-libpaper2_2.2.5-0.3_ppc64el.deb ... 418s Unpacking libpaper2:ppc64el (2.2.5-0.3) ... 418s Selecting previously unselected package libice6:ppc64el. 418s Preparing to unpack .../124-libice6_2%3a1.1.1-1_ppc64el.deb ... 418s Unpacking libice6:ppc64el (2:1.1.1-1) ... 418s Selecting previously unselected package libsm6:ppc64el. 418s Preparing to unpack .../125-libsm6_2%3a1.2.6-1_ppc64el.deb ... 418s Unpacking libsm6:ppc64el (2:1.2.6-1) ... 418s Selecting previously unselected package libxt6t64:ppc64el. 418s Preparing to unpack .../126-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ... 418s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 418s Selecting previously unselected package libgs10:ppc64el. 418s Preparing to unpack .../127-libgs10_10.05.0dfsg1-0ubuntu1_ppc64el.deb ... 418s Unpacking libgs10:ppc64el (10.05.0dfsg1-0ubuntu1) ... 418s Selecting previously unselected package ghostscript. 418s Preparing to unpack .../128-ghostscript_10.05.0dfsg1-0ubuntu1_ppc64el.deb ... 418s Unpacking ghostscript (10.05.0dfsg1-0ubuntu1) ... 418s Selecting previously unselected package libnetpbm11t64:ppc64el. 418s Preparing to unpack .../129-libnetpbm11t64_2%3a11.10.02-1build1_ppc64el.deb ... 418s Unpacking libnetpbm11t64:ppc64el (2:11.10.02-1build1) ... 418s Selecting previously unselected package netpbm. 418s Preparing to unpack .../130-netpbm_2%3a11.10.02-1build1_ppc64el.deb ... 418s Unpacking netpbm (2:11.10.02-1build1) ... 418s Selecting previously unselected package tex-common. 418s Preparing to unpack .../131-tex-common_6.19_all.deb ... 418s Unpacking tex-common (6.19) ... 418s Selecting previously unselected package libpaper-utils. 418s Preparing to unpack .../132-libpaper-utils_2.2.5-0.3_ppc64el.deb ... 418s Unpacking libpaper-utils (2.2.5-0.3) ... 418s Selecting previously unselected package libkpathsea6:ppc64el. 418s Preparing to unpack .../133-libkpathsea6_2024.20240313.70630+ds-6_ppc64el.deb ... 418s Unpacking libkpathsea6:ppc64el (2024.20240313.70630+ds-6) ... 418s Selecting previously unselected package libptexenc1:ppc64el. 418s Preparing to unpack .../134-libptexenc1_2024.20240313.70630+ds-6_ppc64el.deb ... 418s Unpacking libptexenc1:ppc64el (2024.20240313.70630+ds-6) ... 418s Selecting previously unselected package libsynctex2:ppc64el. 418s Preparing to unpack .../135-libsynctex2_2024.20240313.70630+ds-6_ppc64el.deb ... 418s Unpacking libsynctex2:ppc64el (2024.20240313.70630+ds-6) ... 418s Selecting previously unselected package libtexlua53-5:ppc64el. 418s Preparing to unpack .../136-libtexlua53-5_2024.20240313.70630+ds-6_ppc64el.deb ... 418s Unpacking libtexlua53-5:ppc64el (2024.20240313.70630+ds-6) ... 418s Selecting previously unselected package t1utils. 418s Preparing to unpack .../137-t1utils_1.41-4build3_ppc64el.deb ... 418s Unpacking t1utils (1.41-4build3) ... 418s Selecting previously unselected package libpixman-1-0:ppc64el. 418s Preparing to unpack .../138-libpixman-1-0_0.44.0-3_ppc64el.deb ... 418s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 418s Selecting previously unselected package libxcb-render0:ppc64el. 418s Preparing to unpack .../139-libxcb-render0_1.17.0-2_ppc64el.deb ... 418s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 418s Selecting previously unselected package libxcb-shm0:ppc64el. 418s Preparing to unpack .../140-libxcb-shm0_1.17.0-2_ppc64el.deb ... 418s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 418s Selecting previously unselected package libcairo2:ppc64el. 418s Preparing to unpack .../141-libcairo2_1.18.4-1_ppc64el.deb ... 418s Unpacking libcairo2:ppc64el (1.18.4-1) ... 418s Selecting previously unselected package libgraphite2-3:ppc64el. 418s Preparing to unpack .../142-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 418s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 418s Selecting previously unselected package libharfbuzz0b:ppc64el. 418s Preparing to unpack .../143-libharfbuzz0b_10.2.0-1_ppc64el.deb ... 418s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ... 418s Selecting previously unselected package libmpfi0:ppc64el. 418s Preparing to unpack .../144-libmpfi0_1.5.4+ds-4_ppc64el.deb ... 418s Unpacking libmpfi0:ppc64el (1.5.4+ds-4) ... 418s Selecting previously unselected package libpotrace0:ppc64el. 418s Preparing to unpack .../145-libpotrace0_1.16-2build1_ppc64el.deb ... 418s Unpacking libpotrace0:ppc64el (1.16-2build1) ... 418s Selecting previously unselected package libteckit0:ppc64el. 418s Preparing to unpack .../146-libteckit0_2.5.12+ds1-1_ppc64el.deb ... 418s Unpacking libteckit0:ppc64el (2.5.12+ds1-1) ... 418s Selecting previously unselected package libxmu6:ppc64el. 418s Preparing to unpack .../147-libxmu6_2%3a1.1.3-3build2_ppc64el.deb ... 418s Unpacking libxmu6:ppc64el (2:1.1.3-3build2) ... 418s Selecting previously unselected package libxaw7:ppc64el. 418s Preparing to unpack .../148-libxaw7_2%3a1.0.16-1_ppc64el.deb ... 418s Unpacking libxaw7:ppc64el (2:1.0.16-1) ... 418s Selecting previously unselected package libxi6:ppc64el. 418s Preparing to unpack .../149-libxi6_2%3a1.8.2-1_ppc64el.deb ... 418s Unpacking libxi6:ppc64el (2:1.8.2-1) ... 418s Selecting previously unselected package libzzip-0-13t64:ppc64el. 418s Preparing to unpack .../150-libzzip-0-13t64_0.13.78+dfsg.1-0.1_ppc64el.deb ... 418s Unpacking libzzip-0-13t64:ppc64el (0.13.78+dfsg.1-0.1) ... 419s Selecting previously unselected package texlive-binaries. 419s Preparing to unpack .../151-texlive-binaries_2024.20240313.70630+ds-6_ppc64el.deb ... 419s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 419s Selecting previously unselected package xdg-utils. 419s Preparing to unpack .../152-xdg-utils_1.2.1-2ubuntu1_all.deb ... 419s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 419s Selecting previously unselected package texlive-base. 419s Preparing to unpack .../153-texlive-base_2024.20250309-1_all.deb ... 419s Unpacking texlive-base (2024.20250309-1) ... 420s Selecting previously unselected package hicolor-icon-theme. 420s Preparing to unpack .../154-hicolor-icon-theme_0.18-2_all.deb ... 420s Unpacking hicolor-icon-theme (0.18-2) ... 420s Selecting previously unselected package imagemagick-7.q16. 420s Preparing to unpack .../155-imagemagick-7.q16_8%3a7.1.1.43+dfsg1-1ubuntu1_ppc64el.deb ... 420s Unpacking imagemagick-7.q16 (8:7.1.1.43+dfsg1-1ubuntu1) ... 420s Selecting previously unselected package imagemagick. 420s Preparing to unpack .../156-imagemagick_8%3a7.1.1.43+dfsg1-1ubuntu1_ppc64el.deb ... 420s Unpacking imagemagick (8:7.1.1.43+dfsg1-1ubuntu1) ... 420s Selecting previously unselected package hevea. 420s Preparing to unpack .../157-hevea_2.36-2_ppc64el.deb ... 420s Unpacking hevea (2.36-2) ... 420s Selecting previously unselected package libsuitesparseconfig7:ppc64el. 420s Preparing to unpack .../158-libsuitesparseconfig7_1%3a7.10.1+dfsg-1_ppc64el.deb ... 420s Unpacking libsuitesparseconfig7:ppc64el (1:7.10.1+dfsg-1) ... 420s Selecting previously unselected package libamd3:ppc64el. 420s Preparing to unpack .../159-libamd3_1%3a7.10.1+dfsg-1_ppc64el.deb ... 420s Unpacking libamd3:ppc64el (1:7.10.1+dfsg-1) ... 420s Selecting previously unselected package libapache-pom-java. 420s Preparing to unpack .../160-libapache-pom-java_33-2_all.deb ... 420s Unpacking libapache-pom-java (33-2) ... 420s Selecting previously unselected package libarpack2t64:ppc64el. 420s Preparing to unpack .../161-libarpack2t64_3.9.1-6_ppc64el.deb ... 420s Unpacking libarpack2t64:ppc64el (3.9.1-6) ... 420s Selecting previously unselected package libcolamd3:ppc64el. 420s Preparing to unpack .../162-libcolamd3_1%3a7.10.1+dfsg-1_ppc64el.deb ... 420s Unpacking libcolamd3:ppc64el (1:7.10.1+dfsg-1) ... 420s Selecting previously unselected package libcommons-parent-java. 420s Preparing to unpack .../163-libcommons-parent-java_56-1_all.deb ... 420s Unpacking libcommons-parent-java (56-1) ... 420s Selecting previously unselected package libcommons-logging-java. 420s Preparing to unpack .../164-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 420s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 420s Selecting previously unselected package libexpat1-dev:ppc64el. 420s Preparing to unpack .../165-libexpat1-dev_2.7.1-1_ppc64el.deb ... 420s Unpacking libexpat1-dev:ppc64el (2.7.1-1) ... 421s Selecting previously unselected package libglpk40:ppc64el. 421s Preparing to unpack .../166-libglpk40_5.0-1build2_ppc64el.deb ... 421s Unpacking libglpk40:ppc64el (5.0-1build2) ... 421s Selecting previously unselected package libplfit0:ppc64el. 421s Preparing to unpack .../167-libplfit0_0.9.6+ds-2ubuntu1_ppc64el.deb ... 421s Unpacking libplfit0:ppc64el (0.9.6+ds-2ubuntu1) ... 421s Selecting previously unselected package libigraph3t64:ppc64el. 421s Preparing to unpack .../168-libigraph3t64_0.10.15+ds-3build1_ppc64el.deb ... 421s Unpacking libigraph3t64:ppc64el (0.10.15+ds-3build1) ... 421s Selecting previously unselected package libjs-jquery. 421s Preparing to unpack .../169-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 421s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 421s Selecting previously unselected package libjs-jquery-ui. 421s Preparing to unpack .../170-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 421s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 421s Selecting previously unselected package libjs-underscore. 421s Preparing to unpack .../171-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 421s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 421s Selecting previously unselected package libjs-sphinxdoc. 421s Preparing to unpack .../172-libjs-sphinxdoc_8.2.3-1ubuntu2_all.deb ... 421s Unpacking libjs-sphinxdoc (8.2.3-1ubuntu2) ... 421s Selecting previously unselected package libjson-perl. 421s Preparing to unpack .../173-libjson-perl_4.10000-1_all.deb ... 421s Unpacking libjson-perl (4.10000-1) ... 421s Selecting previously unselected package libmbedcrypto16:ppc64el. 421s Preparing to unpack .../174-libmbedcrypto16_3.6.2-3ubuntu1_ppc64el.deb ... 421s Unpacking libmbedcrypto16:ppc64el (3.6.2-3ubuntu1) ... 421s Selecting previously unselected package libmbedx509-7:ppc64el. 421s Preparing to unpack .../175-libmbedx509-7_3.6.2-3ubuntu1_ppc64el.deb ... 421s Unpacking libmbedx509-7:ppc64el (3.6.2-3ubuntu1) ... 421s Selecting previously unselected package libmbedtls21:ppc64el. 421s Preparing to unpack .../176-libmbedtls21_3.6.2-3ubuntu1_ppc64el.deb ... 421s Unpacking libmbedtls21:ppc64el (3.6.2-3ubuntu1) ... 421s Selecting previously unselected package zlib1g-dev:ppc64el. 421s Preparing to unpack .../177-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 421s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 421s Selecting previously unselected package libpython3.13-dev:ppc64el. 421s Preparing to unpack .../178-libpython3.13-dev_3.13.5-2_ppc64el.deb ... 421s Unpacking libpython3.13-dev:ppc64el (3.13.5-2) ... 421s Selecting previously unselected package libpython3-dev:ppc64el. 421s Preparing to unpack .../179-libpython3-dev_3.13.5-1_ppc64el.deb ... 421s Unpacking libpython3-dev:ppc64el (3.13.5-1) ... 421s Selecting previously unselected package libpython3-all-dev:ppc64el. 421s Preparing to unpack .../180-libpython3-all-dev_3.13.5-1_ppc64el.deb ... 421s Unpacking libpython3-all-dev:ppc64el (3.13.5-1) ... 421s Selecting previously unselected package libqhull-r8.0:ppc64el. 421s Preparing to unpack .../181-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 421s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 421s Selecting previously unselected package libraqm0:ppc64el. 421s Preparing to unpack .../182-libraqm0_0.10.2-1_ppc64el.deb ... 421s Unpacking libraqm0:ppc64el (0.10.2-1) ... 421s Selecting previously unselected package libxslt1.1:ppc64el. 421s Preparing to unpack .../183-libxslt1.1_1.1.43-0exp1_ppc64el.deb ... 421s Unpacking libxslt1.1:ppc64el (1.1.43-0exp1) ... 421s Selecting previously unselected package mafft. 421s Preparing to unpack .../184-mafft_7.505-1_ppc64el.deb ... 421s Unpacking mafft (7.505-1) ... 421s Selecting previously unselected package ncbi-data. 421s Preparing to unpack .../185-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... 421s Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... 421s Selecting previously unselected package ncbi-blast+. 421s Preparing to unpack .../186-ncbi-blast+_2.16.0+ds-7_ppc64el.deb ... 421s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 422s Selecting previously unselected package phylip. 422s Preparing to unpack .../187-phylip_1%3a3.697+dfsg-4build1_ppc64el.deb ... 422s Unpacking phylip (1:3.697+dfsg-4build1) ... 422s Selecting previously unselected package prank. 422s Preparing to unpack .../188-prank_0.0.170427+dfsg-3_ppc64el.deb ... 422s Unpacking prank (0.0.170427+dfsg-3) ... 422s Selecting previously unselected package preview-latex-style. 422s Preparing to unpack .../189-preview-latex-style_13.2-1.1_all.deb ... 422s Unpacking preview-latex-style (13.2-1.1) ... 422s Selecting previously unselected package probcons. 422s Preparing to unpack .../190-probcons_1.12-14_ppc64el.deb ... 422s Unpacking probcons (1.12-14) ... 422s Selecting previously unselected package python-biopython-doc. 422s Preparing to unpack .../191-python-biopython-doc_1.85+dfsg-4_all.deb ... 422s Unpacking python-biopython-doc (1.85+dfsg-4) ... 422s Selecting previously unselected package python-matplotlib-data. 422s Preparing to unpack .../192-python-matplotlib-data_3.10.1+dfsg1-4_all.deb ... 422s Unpacking python-matplotlib-data (3.10.1+dfsg1-4) ... 422s Selecting previously unselected package python3-all. 422s Preparing to unpack .../193-python3-all_3.13.5-1_ppc64el.deb ... 422s Unpacking python3-all (3.13.5-1) ... 422s Selecting previously unselected package python3.13-dev. 422s Preparing to unpack .../194-python3.13-dev_3.13.5-2_ppc64el.deb ... 422s Unpacking python3.13-dev (3.13.5-2) ... 422s Selecting previously unselected package python3-dev. 422s Preparing to unpack .../195-python3-dev_3.13.5-1_ppc64el.deb ... 422s Unpacking python3-dev (3.13.5-1) ... 422s Selecting previously unselected package python3-all-dev. 422s Preparing to unpack .../196-python3-all-dev_3.13.5-1_ppc64el.deb ... 422s Unpacking python3-all-dev (3.13.5-1) ... 422s Selecting previously unselected package python3-charset-normalizer. 422s Preparing to unpack .../197-python3-charset-normalizer_3.4.2-1_ppc64el.deb ... 422s Unpacking python3-charset-normalizer (3.4.2-1) ... 422s Selecting previously unselected package python3.13-tk. 422s Preparing to unpack .../198-python3.13-tk_3.13.5-2_ppc64el.deb ... 422s Unpacking python3.13-tk (3.13.5-2) ... 423s Selecting previously unselected package python3-tk:ppc64el. 423s Preparing to unpack .../199-python3-tk_3.13.4-1_ppc64el.deb ... 423s Unpacking python3-tk:ppc64el (3.13.4-1) ... 423s Selecting previously unselected package python3-pil.imagetk:ppc64el. 423s Preparing to unpack .../200-python3-pil.imagetk_11.1.0-5build1_ppc64el.deb ... 423s Unpacking python3-pil.imagetk:ppc64el (11.1.0-5build1) ... 423s Selecting previously unselected package python3-pil:ppc64el. 423s Preparing to unpack .../201-python3-pil_11.1.0-5build1_ppc64el.deb ... 423s Unpacking python3-pil:ppc64el (11.1.0-5build1) ... 423s Selecting previously unselected package python3-cairo. 423s Preparing to unpack .../202-python3-cairo_1.27.0-2_ppc64el.deb ... 423s Unpacking python3-cairo (1.27.0-2) ... 423s Selecting previously unselected package python3-freetype. 423s Preparing to unpack .../203-python3-freetype_2.5.1-1_all.deb ... 423s Unpacking python3-freetype (2.5.1-1) ... 423s Selecting previously unselected package python3-rlpycairo. 423s Preparing to unpack .../204-python3-rlpycairo_0.3.0-3_all.deb ... 423s Unpacking python3-rlpycairo (0.3.0-3) ... 423s Selecting previously unselected package python3-reportlab. 423s Preparing to unpack .../205-python3-reportlab_4.4.2-1_all.deb ... 423s Unpacking python3-reportlab (4.4.2-1) ... 423s Selecting previously unselected package w3c-sgml-lib. 423s Preparing to unpack .../206-w3c-sgml-lib_1.3-3_all.deb ... 423s Unpacking w3c-sgml-lib (1.3-3) ... 423s Selecting previously unselected package python3-biopython. 423s Preparing to unpack .../207-python3-biopython_1.85+dfsg-4_ppc64el.deb ... 423s Unpacking python3-biopython (1.85+dfsg-4) ... 423s Selecting previously unselected package python3-biopython-sql. 423s Preparing to unpack .../208-python3-biopython-sql_1.85+dfsg-4_all.deb ... 423s Unpacking python3-biopython-sql (1.85+dfsg-4) ... 423s Selecting previously unselected package python3-brotli. 423s Preparing to unpack .../209-python3-brotli_1.1.0-2build4_ppc64el.deb ... 423s Unpacking python3-brotli (1.1.0-2build4) ... 423s Selecting previously unselected package python3-contourpy. 423s Preparing to unpack .../210-python3-contourpy_1.3.1-1build1_ppc64el.deb ... 423s Unpacking python3-contourpy (1.3.1-1build1) ... 423s Selecting previously unselected package python3-cycler. 423s 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python3-platformdirs (4.3.7-1) ... 423s Selecting previously unselected package python3-fs. 423s Preparing to unpack .../217-python3-fs_2.4.16-7_all.deb ... 423s Unpacking python3-fs (2.4.16-7) ... 423s Selecting previously unselected package python3-lxml:ppc64el. 423s Preparing to unpack .../218-python3-lxml_5.4.0-1build1_ppc64el.deb ... 423s Unpacking python3-lxml:ppc64el (5.4.0-1build1) ... 423s Selecting previously unselected package python3-lz4. 423s Preparing to unpack .../219-python3-lz4_4.4.0+dfsg-2_ppc64el.deb ... 423s Unpacking python3-lz4 (4.4.0+dfsg-2) ... 423s Selecting previously unselected package python3-scipy. 423s Preparing to unpack .../220-python3-scipy_1.15.3-1_ppc64el.deb ... 423s Unpacking python3-scipy (1.15.3-1) ... 424s Selecting previously unselected package python3-mpmath. 424s Preparing to unpack .../221-python3-mpmath_1.3.0-1_all.deb ... 424s Unpacking python3-mpmath (1.3.0-1) ... 424s Selecting previously unselected package python3-sympy. 424s Preparing to unpack .../222-python3-sympy_1.13.3-5_all.deb ... 424s Unpacking python3-sympy (1.13.3-5) ... 424s Selecting previously unselected package python3-ufolib2. 424s Preparing to unpack .../223-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 424s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 424s Selecting previously unselected package unicode-data. 424s Preparing to unpack .../224-unicode-data_15.1.0-1_all.deb ... 424s Unpacking unicode-data (15.1.0-1) ... 424s Selecting previously unselected package python3-fonttools. 424s Preparing to unpack .../225-python3-fonttools_4.55.3-2build1_ppc64el.deb ... 424s Unpacking python3-fonttools (4.55.3-2build1) ... 424s Selecting previously unselected package python3-imagesize. 424s Preparing to unpack .../226-python3-imagesize_1.4.1-1_all.deb ... 424s Unpacking python3-imagesize (1.4.1-1) ... 424s Selecting previously unselected package python3-kiwisolver. 424s Preparing to unpack .../227-python3-kiwisolver_1.4.7-3build1_ppc64el.deb ... 424s Unpacking python3-kiwisolver (1.4.7-3build1) ... 424s Selecting previously unselected package python3-matplotlib. 424s Preparing to unpack .../228-python3-matplotlib_3.10.1+dfsg1-4_ppc64el.deb ... 424s Unpacking python3-matplotlib (3.10.1+dfsg1-4) ... 425s Selecting previously unselected package python3-msgpack. 425s Preparing to unpack .../229-python3-msgpack_1.0.3-3build4_ppc64el.deb ... 425s Unpacking python3-msgpack (1.0.3-3build4) ... 425s Selecting previously unselected package python3-mmtf. 425s Preparing to unpack .../230-python3-mmtf_1.1.3-1_all.deb ... 425s Unpacking python3-mmtf (1.1.3-1) ... 425s Selecting previously unselected package python3-mysqldb. 425s Preparing to unpack .../231-python3-mysqldb_1.4.6-2build6_ppc64el.deb ... 425s Unpacking python3-mysqldb (1.4.6-2build6) ... 425s Selecting previously unselected package python3-networkx. 425s Preparing to unpack .../232-python3-networkx_3.2.1-4ubuntu1_all.deb ... 425s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 425s Selecting previously unselected package sphinx-common. 425s Preparing to unpack .../233-sphinx-common_8.2.3-1ubuntu2_all.deb ... 425s Unpacking sphinx-common (8.2.3-1ubuntu2) ... 426s Selecting previously unselected package python3-alabaster. 426s Preparing to unpack .../234-python3-alabaster_0.7.16-0.1_all.deb ... 426s Unpacking python3-alabaster (0.7.16-0.1) ... 426s Selecting previously unselected package python3-snowballstemmer. 426s Preparing to unpack .../235-python3-snowballstemmer_2.2.0-4build1_all.deb ... 426s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 426s Selecting previously unselected package python3-sphinx. 426s Preparing to unpack .../236-python3-sphinx_8.2.3-1ubuntu2_all.deb ... 426s Unpacking python3-sphinx (8.2.3-1ubuntu2) ... 426s Selecting previously unselected package python3-tabulate. 426s Preparing to unpack .../237-python3-tabulate_0.9.0-1_all.deb ... 426s Unpacking python3-tabulate (0.9.0-1) ... 426s Selecting previously unselected package python3-numpydoc. 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431s Setting up libhpdf-2.3.0:ppc64el (2.3.0+dfsg-1build3) ... 431s Setting up fonts-lato (2.015-1) ... 431s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 431s Setting up libxpm4:ppc64el (1:3.5.17-1build2) ... 431s Setting up hicolor-icon-theme (0.18-2) ... 431s Setting up libxi6:ppc64el (2:1.8.2-1) ... 431s Setting up probcons (1.12-14) ... 431s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 431s Setting up python3-lz4 (4.4.0+dfsg-2) ... 431s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 431s Setting up python3-defusedxml (0.7.1-3) ... 431s Setting up mafft (7.505-1) ... 431s Setting up libarchive-zip-perl (1.68-1) ... 431s Setting up imagemagick-7-common (8:7.1.1.43+dfsg1-1ubuntu1) ... 431s Setting up python3-charset-normalizer (3.4.2-1) ... 431s Setting up bwa (0.7.18-1) ... 431s Setting up python3-alabaster (0.7.16-0.1) ... 431s Setting up fonts-lyx (2.4.3-1) ... 431s Setting up libijs-0.35:ppc64el (0.35-15.3) ... 431s Setting up libdebhelper-perl (13.24.2ubuntu1) ... 431s Setting up libgs-common (10.05.0dfsg1-0ubuntu1) ... 431s Setting up libfontbox-java (1:1.8.16-5) ... 431s Setting up phylip (1:3.697+dfsg-4build1) ... 431s Setting up x11-common (1:7.7+24ubuntu1) ... 432s Setting up libpq5:ppc64el (17.5-1build1) ... 432s Setting up libdeflate0:ppc64el (1.23-2) ... 432s Setting up python3-tabulate (0.9.0-1) ... 432s Setting up m4 (1.4.19-8) ... 432s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ... 432s Setting up python3-all (3.13.5-1) ... 432s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 432s Setting up libgomp1:ppc64el (15.1.0-8ubuntu1) ... 432s Setting up python3-freetype (2.5.1-1) ... 432s Setting up emboss-data (6.6.0+dfsg-15ubuntu2) ... 432s Setting up python3-networkx (3.2.1-4ubuntu1) ... 433s Setting up libmysqlclient24:ppc64el (8.4.5-0ubuntu3) ... 433s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 433s Setting up libnetpbm11t64:ppc64el (2:11.10.02-1build1) ... 433s Setting up python3-platformdirs (4.3.7-1) ... 434s Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 434s Setting up poppler-data (0.4.12-1) ... 434s Setting up python3-fs (2.4.16-7) ... 434s Setting up unicode-data (15.1.0-1) ... 434s Setting up python3-mysqldb (1.4.6-2build6) ... 434s Setting up tex-common (6.19) ... 434s update-language: texlive-base not installed and configured, doing nothing! 434s Setting up python3-roman (5.0-1) ... 434s Setting up python3-decorator (5.2.1-2) ... 434s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 434s Setting up autotools-dev (20240727.1) ... 434s Setting up libblas3:ppc64el (3.12.1-2build1) ... 434s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 434s Setting up libexpat1-dev:ppc64el (2.7.1-1) ... 434s Setting up libzzip-0-13t64:ppc64el (0.13.78+dfsg.1-0.1) ... 434s Setting up libjbig2dec0:ppc64el (0.20-1build3) ... 434s Setting up python3-snowballstemmer (2.2.0-4build1) ... 435s Setting up libteckit0:ppc64el (2.5.12+ds1-1) ... 435s Setting up python3-brotli (1.1.0-2build4) ... 435s Setting up libapache-pom-java (33-2) ... 435s Setting up libavahi-common-data:ppc64el (0.8-16ubuntu2) ... 435s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 435s Setting up t1utils (1.41-4build3) ... 435s Setting up libquadmath0:ppc64el (15.1.0-8ubuntu1) ... 435s Setting up python3-cycler (0.12.1-1) ... 435s Setting up libtexlua53-5:ppc64el (2024.20240313.70630+ds-6) ... 435s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 435s Setting up fonts-dejavu-mono (2.37-8) ... 435s Setting up python3-kiwisolver (1.4.7-3build1) ... 435s Setting up libmpc3:ppc64el (1.3.1-1build2) ... 435s Setting up python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 435s Setting up libidn12:ppc64el (1.43-1) ... 435s Setting up libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 435s Setting up autopoint (0.23.1-2build1) ... 435s Setting up libmpfi0:ppc64el 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(1:5.1-2) ... 436s Setting up fonts-lmodern (2.005-1) ... 436s Setting up libsuitesparseconfig7:ppc64el (1:7.10.1+dfsg-1) ... 436s Setting up libopenjp2-7:ppc64el (2.5.3-2) ... 436s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ... 436s Setting up fasttree (2.1.11-2) ... 436s Setting up sgml-base (1.31+nmu1) ... 436s Setting up python3-msgpack (1.0.3-3build4) ... 436s Setting up libplfit0:ppc64el (0.9.6+ds-2ubuntu1) ... 436s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 436s Setting up libmbedcrypto16:ppc64el (3.6.2-3ubuntu1) ... 436s Setting up libpaper2:ppc64el (2.2.5-0.3) ... 436s Setting up libtsan2:ppc64el (15.1.0-8ubuntu1) ... 436s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 436s Setting up python3-mpmath (1.3.0-1) ... 436s Setting up libisl23:ppc64el (0.27-1) ... 436s Setting up libde265-0:ppc64el (1.0.16-1) ... 436s Setting up python-matplotlib-data (3.10.1+dfsg1-4) ... 436s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 436s Setting up dialign (2.2.1-13) ... 436s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 436s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... 436s Setting up xdg-utils (1.2.1-2ubuntu1) ... 436s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 436s Setting up libcc1-0:ppc64el (15.1.0-8ubuntu1) ... 436s Setting up liblsan0:ppc64el (15.1.0-8ubuntu1) ... 436s Setting up libitm1:ppc64el (15.1.0-8ubuntu1) ... 436s Setting up libsynctex2:ppc64el (2024.20240313.70630+ds-6) ... 436s Setting up prank (0.0.170427+dfsg-3) ... 436s Setting up libargtable2-0:ppc64el (13-4) ... 436s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 436s Setting up python3-imagesize (1.4.1-1) ... 436s Setting up libpotrace0:ppc64el (1.16-2build1) ... 436s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 436s Setting up automake (1:1.17-4ubuntu1) ... 436s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 436s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 436s Setting up python3-sympy (1.13.3-5) ... 442s Setting up libice6:ppc64el (2:1.1.1-1) ... 442s Setting up flex (2.6.4-8.2build1) ... 442s Setting up liblapack3:ppc64el (3.12.1-2build1) ... 442s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 442s Setting up gettext (0.23.1-2build1) ... 442s Setting up libarpack2t64:ppc64el (3.9.1-6) ... 442s Setting up libamd3:ppc64el (1:7.10.1+dfsg-1) ... 442s Setting up libpdfbox-java (1:1.8.16-5) ... 442s Setting up libcolamd3:ppc64el (1:7.10.1+dfsg-1) ... 442s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 442s Setting up wise (2.4.1-27) ... 442s Setting up preview-latex-style (13.2-1.1) ... 442s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 442s Setting up libcommons-parent-java (56-1) ... 442s Setting up libavahi-common3:ppc64el (0.8-16ubuntu2) ... 442s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 442s Setting up libcifpp7:ppc64el (7.0.9-1) ... 442s Setting up libpaper-utils (2.2.5-0.3) ... 442s Setting up clustalo (1.2.4-8build1) ... 442s Setting up dssp (4.4.10-1) ... 442s Setting up xfonts-utils (1:7.7+7) ... 442s Setting up intltool-debian (0.35.0+20060710.6) ... 442s Setting up libmbedx509-7:ppc64el (3.6.2-3ubuntu1) ... 442s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 442s Setting up libptexenc1:ppc64el (2024.20240313.70630+ds-6) ... 442s Setting up libglpk40:ppc64el (5.0-1build2) ... 442s Setting up libraqm0:ppc64el (0.10.2-1) ... 442s Setting up libpython3.13-dev:ppc64el (3.13.5-2) ... 442s Setting up cpp-14-powerpc64le-linux-gnu (14.3.0-1ubuntu1) ... 442s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 445s Setting up libjs-sphinxdoc (8.2.3-1ubuntu2) ... 445s Setting up libraw23t64:ppc64el (0.21.4-2) ... 445s Setting up cpp-14 (14.3.0-1ubuntu1) ... 445s Setting up libmbedtls21:ppc64el (3.6.2-3ubuntu1) ... 445s Setting up dh-strip-nondeterminism (1.14.1-2) ... 445s Setting up python3-lxml:ppc64el (5.4.0-1build1) ... 445s Setting up python-biopython-doc (1.85+dfsg-4) ... 445s Setting up libtiff6:ppc64el (4.7.0-3ubuntu1) ... 445s Setting up xml-core (0.19) ... 445s Setting up python3-contourpy (1.3.1-1build1) ... 445s Setting up libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 445s Setting up libgcc-14-dev:ppc64el (14.3.0-1ubuntu1) ... 445s Setting up libigraph3t64:ppc64el (0.10.15+ds-3build1) ... 445s Setting up libstdc++-14-dev:ppc64el (14.3.0-1ubuntu1) ... 445s Setting up libsm6:ppc64el (2:1.2.6-1) ... 445s Setting up libavahi-client3:ppc64el (0.8-16ubuntu2) ... 445s Setting up cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 445s Setting up gcc-14-powerpc64le-linux-gnu (14.3.0-1ubuntu1) ... 445s Setting up libxft2:ppc64el (2.3.6-1build1) ... 445s Setting up python3-scipy (1.15.3-1) ... 449s Setting up libpython3-dev:ppc64el (3.13.5-1) ... 449s Setting up g++-14-powerpc64le-linux-gnu (14.3.0-1ubuntu1) ... 449s Setting up python3.13-dev (3.13.5-2) ... 449s Setting up po-debconf (1.0.21+nmu1) ... 449s Setting up libtk8.6:ppc64el (8.6.16-1) ... 449s Setting up python3-mmtf (1.1.3-1) ... 449s Setting up fonts-urw-base35 (20200910-8) ... 449s Setting up libcairo2:ppc64el (1.18.4-1) ... 449s Setting up python3.13-tk (3.13.5-2) ... 449s Setting up gcc-14 (14.3.0-1ubuntu1) ... 449s Setting up ncbi-blast+ (2.16.0+ds-7) ... 449s Setting up python3-pil:ppc64el (11.1.0-5build1) ... 450s Setting up gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 450s Setting up libpython3-all-dev:ppc64el (3.13.5-1) ... 450s Setting up sphinx-common (8.2.3-1ubuntu2) ... 450s Setting up python3-dev (3.13.5-1) ... 450s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 450s Setting up netpbm (2:11.10.02-1build1) ... 450s Setting up python3-igraph (0.11.8+ds-1build1) ... 450s Setting up cpp (4:14.2.0-1ubuntu1) ... 450s Setting up g++-14 (14.3.0-1ubuntu1) ... 450s Setting up libcups2t64:ppc64el (2.4.12-0ubuntu1) ... 450s Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 450s Setting up python3-all-dev (3.13.5-1) ... 450s Setting up libgs10-common (10.05.0dfsg1-0ubuntu1) ... 450s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 450s Setting up libxmu6:ppc64el (2:1.1.3-3build2) ... 450s Setting up python3-cairo (1.27.0-2) ... 450s Setting up libtool (2.5.4-4) ... 450s Setting up blt (2.5.3+dfsg-8) ... 450s Setting up python3-tk:ppc64el (3.13.4-1) ... 450s Setting up libxaw7:ppc64el (2:1.0.16-1) ... 450s Setting up gcc (4:14.2.0-1ubuntu1) ... 450s Setting up dh-autoreconf (20) ... 450s Setting up python3-pil.imagetk:ppc64el (11.1.0-5build1) ... 450s Setting up python3-rlpycairo (0.3.0-3) ... 450s Setting up python3-reportlab (4.4.2-1) ... 451s Setting up g++ (4:14.2.0-1ubuntu1) ... 451s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 451s Setting up texlive-binaries (2024.20240313.70630+ds-6) ... 451s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 451s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 451s Setting up build-essential (12.12ubuntu1) ... 451s Setting up texlive-base (2024.20250309-1) ... 451s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 452s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 452s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 452s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 453s Setting up libgs10:ppc64el (10.05.0dfsg1-0ubuntu1) ... 453s Setting up debhelper (13.24.2ubuntu1) ... 453s Setting up ghostscript (10.05.0dfsg1-0ubuntu1) ... 453s Setting up texlive-latex-base (2024.20250309-1) ... 453s Setting up texlive-latex-recommended (2024.20250309-1) ... 453s Setting up texlive-pictures (2024.20250309-1) ... 453s Setting up texlive-fonts-recommended (2024.20250309-1) ... 453s Setting up texlive-latex-extra (2024.20250309-2) ... 453s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 453s Setting up libheif-plugin-aomdec:ppc64el (1.19.8-1) ... 453s Setting up libheif-plugin-libde265:ppc64el (1.19.8-1) ... 453s Setting up libheif1:ppc64el (1.19.8-1) ... 453s Setting up python3-fonttools (4.55.3-2build1) ... 454s Setting up libgd3:ppc64el (2.3.3-13ubuntu1) ... 454s Setting up libmagickcore-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1ubuntu1) ... 454s Setting up emboss-lib (6.6.0+dfsg-15ubuntu2) ... 454s Setting up python3-matplotlib (3.10.1+dfsg1-4) ... 456s Setting up libmagickwand-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1ubuntu1) ... 456s Setting up emboss (6.6.0+dfsg-15ubuntu2) ... 456s Setting up imagemagick-7.q16 (8:7.1.1.43+dfsg1-1ubuntu1) ... 456s update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode 456s update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode 456s update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode 456s update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode 456s update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode 456s update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode 456s update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode 456s update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode 456s update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode 456s update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode 456s update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode 456s update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode 456s update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode 456s update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode 456s update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode 456s update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode 456s update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode 456s update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode 456s update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode 456s update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode 456s update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode 456s update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode 456s update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode 456s update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist 456s update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode 456s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist 456s update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode 456s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist 456s update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode 456s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist 456s Setting up hevea (2.36-2) ... 456s Setting up imagemagick (8:7.1.1.43+dfsg1-1ubuntu1) ... 456s Processing triggers for install-info (7.1.1-1) ... 456s Processing triggers for libc-bin (2.41-6ubuntu2) ... 456s Processing triggers for man-db (2.13.1-1) ... 460s Processing triggers for shared-mime-info (2.4-5build2) ... 461s Processing triggers for sgml-base (1.31+nmu1) ... 461s Setting up w3c-sgml-lib (1.3-3) ... 489s Setting up docutils-common (0.21.2+dfsg-2) ... 489s Setting up python3-biopython (1.85+dfsg-4) ... 490s Setting up python3-biopython-sql (1.85+dfsg-4) ... 490s Processing triggers for sgml-base (1.31+nmu1) ... 490s Setting up python3-docutils (0.21.2+dfsg-2) ... 491s Setting up python3-sphinx (8.2.3-1ubuntu2) ... 491s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 492s Setting up python3-numpydoc (1.8.0-2) ... 492s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... 492s Processing triggers for tex-common (6.19) ... 492s Running updmap-sys. This may take some time... done. 492s Running mktexlsr /var/lib/texmf ... done. 492s Building format(s) --all. 576s This may take some time... done. 581s autopkgtest [03:49:57]: test full_suite: sh debian/tests/run-unit-test 581s autopkgtest [03:49:57]: test full_suite: [----------------------- 584s mkdir: created directory 'Bio' 584s mkdir: created directory 'Bio/Align' 584s mkdir: created directory 'Bio/Align/substitution_matrices' 584s mkdir: created directory 'Bio/Align/substitution_matrices/data/' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22' -> 'Bio/Align/substitution_matrices/data/BENNER22' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6' -> 'Bio/Align/substitution_matrices/data/BENNER6' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74' -> 'Bio/Align/substitution_matrices/data/BENNER74' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTN' -> 'Bio/Align/substitution_matrices/data/BLASTN' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTP' -> 'Bio/Align/substitution_matrices/data/BLASTP' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45' -> 'Bio/Align/substitution_matrices/data/BLOSUM45' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50' -> 'Bio/Align/substitution_matrices/data/BLOSUM50' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' -> 'Bio/Align/substitution_matrices/data/BLOSUM62' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80' -> 'Bio/Align/substitution_matrices/data/BLOSUM80' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90' -> 'Bio/Align/substitution_matrices/data/BLOSUM90' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF' -> 'Bio/Align/substitution_matrices/data/DAYHOFF' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG' -> 'Bio/Align/substitution_matrices/data/FENG' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC' -> 'Bio/Align/substitution_matrices/data/GENETIC' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992' -> 'Bio/Align/substitution_matrices/data/GONNET1992' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70' -> 'Bio/Align/substitution_matrices/data/HOXD70' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON' -> 'Bio/Align/substitution_matrices/data/JOHNSON' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES' -> 'Bio/Align/substitution_matrices/data/JONES' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN' -> 'Bio/Align/substitution_matrices/data/LEVIN' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN' -> 'Bio/Align/substitution_matrices/data/MCLACHLAN' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78' -> 'Bio/Align/substitution_matrices/data/MDM78' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MEGABLAST' -> 'Bio/Align/substitution_matrices/data/MEGABLAST' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4' -> 'Bio/Align/substitution_matrices/data/NUC.4.4' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250' -> 'Bio/Align/substitution_matrices/data/PAM250' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30' -> 'Bio/Align/substitution_matrices/data/PAM30' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70' -> 'Bio/Align/substitution_matrices/data/PAM70' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO' -> 'Bio/Align/substitution_matrices/data/RAO' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER' -> 'Bio/Align/substitution_matrices/data/RISLER' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER' -> 'Bio/Align/substitution_matrices/data/SCHNEIDER' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR' -> 'Bio/Align/substitution_matrices/data/STR' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS' -> 'Bio/Align/substitution_matrices/data/TRANS' 585s test_Ace ... ok 585s test_Affy ... ok 589s test_AlignIO ... ok 589s test_AlignIO_ClustalIO ... ok 589s test_AlignIO_EmbossIO ... ok 589s test_AlignIO_FastaIO ... ok 589s test_AlignIO_MauveIO ... ok 589s test_AlignIO_PhylipIO ... ok 589s test_AlignIO_convert ... ok 589s test_AlignInfo ... ok 589s test_Align_Alignment ... ok 589s test_Align_a2m ... ok 589s test_Align_bed ... ok 590s test_Align_bigbed ... ok 590s test_Align_bigmaf ... ok 591s test_Align_bigpsl ... ok 591s test_Align_chain ... ok 591s test_Align_clustal ... ok 598s test_Align_codonalign ... ok 598s test_Align_emboss ... ok 598s test_Align_exonerate ... ok 598s test_Align_fasta ... ok 598s test_Align_hhr ... ok 599s test_Align_maf ... ok 599s test_Align_mauve ... ok 599s test_Align_msf ... ok 599s test_Align_nexus ... ok 599s test_Align_phylip ... ok 600s test_Align_psl ... ok 600s test_Align_sam ... ok 602s test_Align_stockholm ... ok 603s test_Align_tabular ... ok 603s test_Application ... ok 603s test_BioSQL_MySQLdb_online ... skipping. internet not available 603s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) 603s test_BioSQL_mysql_connector_online ... skipping. internet not available 603s test_BioSQL_psycopg2_online ... skipping. internet not available 608s test_BioSQL_sqlite3 ... ok 608s test_BioSQL_sqlite3_online ... skipping. internet not available 608s test_Blast_Record ... ok 609s test_Blast_parser ... ok 609s test_CAPS ... ok 609s test_Chi2 ... ok 610s test_ClustalOmega_tool ... ok 610s test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython. 610s test_Cluster ... ok 610s test_CodonTable ... ok 610s test_ColorSpiral ... ok 610s test_Compass ... ok 612s test_Consensus ... ok 613s test_Dialign_tool ... ok 613s test_EMBL_unittest ... ok 618s test_Emboss ... ok 618s test_EmbossPrimer ... ok 622s test_Entrez ... ok 622s test_Entrez_online ... skipping. internet not available 623s test_Entrez_parser ... ok 623s test_Enzyme ... ok 623s test_ExPASy ... skipping. internet not available 623s test_Fasttree_tool ... ok 623s test_File ... ok 623s test_GenBank ... /usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py:600: BiopythonWarning: Annotation 'Sequence Read Archive: SRX001885, SRX001121, SRX001531, SRX001530, SRX001529' too long 623s warnings.warn(f"Annotation {text!r} too long", BiopythonWarning) 623s ok 626s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' 628s ok 629s test_GraphicsChromosome ... ok 629s test_GraphicsDistribution ... ok 630s test_GraphicsGeneral ... ok 630s test_HMMCasino ... ok 630s test_HMMGeneral ... ok 631s test_KEGG ... ok 631s test_KEGG_online ... skipping. internet not available 636s test_KGML_graphics ... ok 636s test_KGML_graphics_online ... skipping. internet not available 637s test_KGML_nographics ... ok 637s test_KeyWList ... ok 637s test_LogisticRegression ... ok 638s test_MafIO_index ... ok 640s test_Mafft_tool ... ok 640s test_MarkovModel ... ok 640s test_Medline ... ok 640s test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. 641s test_NCBIXML ... Exception ignored in: 641s Traceback (most recent call last): 641s File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse 641s expat_parser.Parse(NULL, True) 641s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0 641s ok 643s test_NCBI_BLAST_tools ... ok 643s test_NCBI_qblast ... ok 643s test_NMR ... ok 643s test_NaiveBayes ... ok 644s test_Nexus ... ok 644s test_PAML_baseml ... ok 644s test_PAML_codeml ... ok 645s test_PAML_yn00 ... ok 649s test_PDB_CEAligner ... ok 651s test_PDB_DSSP ... ok 651s test_PDB_Dice ... ok 651s test_PDB_Disordered ... ok 652s test_PDB_Exposure ... ok 652s test_PDB_FragmentMapper ... ok 654s test_PDB_KDTree ... ok 654s test_PDB_MMCIF2Dict ... ok 654s test_PDB_MMCIFIO ... ok 656s test_PDB_MMCIFParser ... ok 656s test_PDB_NACCESS ... ok 656s test_PDB_PDBIO ... ok 656s test_PDB_PDBList ... skipping. internet not available 663s test_PDB_PDBMLParser ... ok 663s test_PDB_PDBParser ... ok 663s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path 663s test_PDB_Polypeptide ... ok 663s test_PDB_QCPSuperimposer ... ok 667s test_PDB_SASA ... ok 668s test_PDB_SMCRA ... ok 668s test_PDB_Selection ... ok 668s test_PDB_StructureAlignment ... ok 668s test_PDB_Superimposer ... ok 668s test_PDB_alphafold_db ... skipping. internet not available 671s test_PDB_binary_cif ... /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 7. 671s warnings.warn( 671s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 144. 671s warnings.warn( 671s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 153. 671s warnings.warn( 671s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 0. 671s warnings.warn( 671s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 0. 671s warnings.warn( 671s ok 681s test_PDB_internal_coords ... ok 681s test_PDB_parse_pdb_header ... ok 681s test_PDB_vectors ... ok 681s test_PQR ... ok 681s test_Pathway ... ok 681s test_Phd ... ok 682s test_Phylo ... ok 682s test_PhyloXML ... ok 683s test_Phylo_CDAO ... ok 683s test_Phylo_NeXML ... ok 685s test_Phylo_igraph ... ok 687s test_Phylo_matplotlib ... ok 688s test_Phylo_networkx ... ok 688s test_PopGen_GenePop_nodepend ... ok 689s test_Prank_tool ... ok 690s test_Probcons_tool ... ok 690s test_ProtParam ... ok 691s test_RCSBFormats ... ok 691s test_Restriction ... ok 692s test_SCOP_Astral ... ok 692s test_SCOP_Cla ... ok 692s test_SCOP_Des ... ok 692s test_SCOP_Dom ... ok 693s test_SCOP_Hie ... ok 693s test_SCOP_Raf ... ok 693s test_SCOP_Residues ... ok 694s test_SCOP_Scop ... ok 694s test_SVDSuperimposer ... ok 694s test_SearchIO_blast_tab ... ok 695s test_SearchIO_blast_tab_index ... ok 695s test_SearchIO_blast_xml ... ok 697s test_SearchIO_blast_xml_index ... ok 697s test_SearchIO_blat_psl ... ok 697s test_SearchIO_blat_psl_index ... ok 698s test_SearchIO_exonerate ... ok 698s test_SearchIO_exonerate_text_index ... ok 698s test_SearchIO_exonerate_vulgar_index ... ok 699s test_SearchIO_fasta_m10 ... ok 699s test_SearchIO_fasta_m10_index ... ok 699s test_SearchIO_hhsuite2_text ... ok 700s test_SearchIO_hmmer2_text ... ok 700s test_SearchIO_hmmer2_text_index ... ok 701s test_SearchIO_hmmer3_domtab ... ok 701s test_SearchIO_hmmer3_domtab_index ... ok 701s test_SearchIO_hmmer3_tab ... ok 701s test_SearchIO_hmmer3_tab_index ... ok 702s test_SearchIO_hmmer3_text ... ok 702s test_SearchIO_hmmer3_text_index ... ok 703s test_SearchIO_interproscan_xml ... ok 703s test_SearchIO_model ... ok 703s test_SearchIO_write ... ok 704s test_SeqFeature ... ok 721s test_SeqIO ... ok 722s test_SeqIO_AbiIO ... ok 722s test_SeqIO_FastaIO ... ok 723s test_SeqIO_Gck ... ok 723s test_SeqIO_Gfa ... ok 723s test_SeqIO_Insdc ... ok 723s test_SeqIO_NibIO ... ok 726s test_SeqIO_PdbIO ... ok 727s test_SeqIO_QualityIO ... ok 727s test_SeqIO_SeqXML ... ok 727s test_SeqIO_SffIO ... ok 727s test_SeqIO_SnapGene ... ok 729s test_SeqIO_TwoBitIO ... ok 729s test_SeqIO_UniprotIO ... ok 730s test_SeqIO_Xdna ... ok 731s test_SeqIO_features ... ok 750s test_SeqIO_index ... ok 750s test_SeqIO_online ... skipping. internet not available 751s test_SeqIO_write ... ok 751s test_SeqRecord ... ok 751s test_SeqUtils ... ok 753s test_Seq_objs ... ok 754s test_SwissProt ... ok 755s test_TCoffee_tool ... ok 755s test_TogoWS ... skipping. internet not available 756s test_TreeConstruction ... ok 756s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file 757s test_UniGene ... ok 757s test_UniProt ... skipping. internet not available 757s test_UniProt_GOA ... ok 758s test_align ... ok 758s test_align_substitution_matrices ... ok 761s test_bgzf ... ok 761s test_cellosaurus ... ok 769s test_codonalign ... ok 769s test_geo ... ok 770s test_kNN ... ok 770s test_motifs ... ok 771s test_motifs_online ... skipping. internet not available 771s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 771s warnings.warn( 771s ok 771s test_pairwise2_no_C ... ok 772s test_pairwise_aligner ... ok 772s test_pairwise_alignment_map ... ok 780s test_phenotype ... ok 780s test_phenotype_fit ... ok 781s test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. 781s test_prodoc ... ok 781s test_prosite ... ok 782s test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper. 782s test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython 782s test_seq ... ok 783s test_translate ... ok 783s ---------------------------------------------------------------------- 783s Ran 218 tests in 197.786 seconds 783s 783s Skipping any tests requiring internet access 783s Python version: 3.13.5 (main, Jun 25 2025, 18:55:22) [GCC 14.3.0] 783s Operating system: posix linux 784s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'> 784s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'> 784s autopkgtest [03:53:20]: test full_suite: -----------------------] 785s autopkgtest [03:53:21]: test full_suite: - - - - - - - - - - results - - - - - - - - - - 785s full_suite PASS 785s autopkgtest [03:53:21]: @@@@@@@@@@@@@@@@@@@@ summary 785s dependencies PASS 785s full_suite PASS