0s autopkgtest [02:13:33]: starting date and time: 2025-05-05 02:13:33+0000
0s autopkgtest [02:13:33]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
0s autopkgtest [02:13:33]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ef5ngggc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx,src:roman-numerals --apt-upgrade python-biopython --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=sphinx/8.2.3-1 roman-numerals/3.1.0-1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-ppc64el-9.secgroup --name adt-questing-ppc64el-python-biopython-20250505-021333-juju-7f2275-prod-proposed-migration-environment-2-f14aaecc-5947-4d5f-80c4-3e9dfbfd0a64 --image adt/ubuntu-questing-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
139s autopkgtest [02:15:52]: testbed dpkg architecture: ppc64el
139s autopkgtest [02:15:52]: testbed apt version: 3.0.0
139s autopkgtest [02:15:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup
139s autopkgtest [02:15:52]: testbed release detected to be: None
140s autopkgtest [02:15:53]: updating testbed package index (apt update)
140s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
140s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
140s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
140s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
140s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [995 kB]
140s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [31.7 kB]
140s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [97.2 kB]
140s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el Packages [131 kB]
141s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el Packages [946 kB]
141s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse ppc64el Packages [18.6 kB]
141s Fetched 2330 kB in 1s (4389 kB/s)
142s Reading package lists...
142s autopkgtest [02:15:55]: upgrading testbed (apt dist-upgrade and autopurge)
142s Reading package lists...
142s Building dependency tree...
142s Reading state information...
143s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
143s Starting 2 pkgProblemResolver with broken count: 0
143s Done
143s Entering ResolveByKeep
143s
143s Calculating upgrade...
144s The following packages will be upgraded:
144s libperl5.40 perl perl-base perl-modules-5.40
144s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
144s Need to get 10.4 MB of archives.
144s After this operation, 65.5 kB disk space will be freed.
144s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libperl5.40 ppc64el 5.40.1-3 [4949 kB]
144s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl ppc64el 5.40.1-3 [262 kB]
144s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl-base ppc64el 5.40.1-3 [1923 kB]
144s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl-modules-5.40 all 5.40.1-3 [3217 kB]
144s Fetched 10.4 MB in 1s (18.4 MB/s)
145s (Reading database ...
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78710 files and directories currently installed.)
145s Preparing to unpack .../libperl5.40_5.40.1-3_ppc64el.deb ...
145s Unpacking libperl5.40:ppc64el (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
145s Preparing to unpack .../perl_5.40.1-3_ppc64el.deb ...
145s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
145s Preparing to unpack .../perl-base_5.40.1-3_ppc64el.deb ...
145s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
146s Setting up perl-base (5.40.1-3) ...
146s (Reading database ...
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(Reading database ... 45%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78710 files and directories currently installed.)
146s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ...
146s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
146s Setting up perl-modules-5.40 (5.40.1-3) ...
146s Setting up libperl5.40:ppc64el (5.40.1-3) ...
146s Setting up perl (5.40.1-3) ...
146s Processing triggers for man-db (2.13.1-1) ...
147s Processing triggers for libc-bin (2.41-6ubuntu1) ...
147s Reading package lists...
148s Building dependency tree...
148s Reading state information...
148s Starting pkgProblemResolver with broken count: 0
148s Starting 2 pkgProblemResolver with broken count: 0
148s Done
148s Solving dependencies...
148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
150s autopkgtest [02:16:03]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr 6 14:52:42 UTC 2025
150s autopkgtest [02:16:03]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biopython
153s Get:1 http://ftpmaster.internal/ubuntu questing/universe python-biopython 1.85+dfsg-2build1 (dsc) [3406 B]
153s Get:2 http://ftpmaster.internal/ubuntu questing/universe python-biopython 1.85+dfsg-2build1 (tar) [14.6 MB]
153s Get:3 http://ftpmaster.internal/ubuntu questing/universe python-biopython 1.85+dfsg-2build1 (diff) [42.8 kB]
153s gpgv: Signature made Tue Mar 4 15:18:59 2025 UTC
153s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
153s gpgv: Can't check signature: No public key
153s dpkg-source: warning: cannot verify inline signature for ./python-biopython_1.85+dfsg-2build1.dsc: no acceptable signature found
154s autopkgtest [02:16:07]: testing package python-biopython version 1.85+dfsg-2build1
154s autopkgtest [02:16:07]: build not needed
159s autopkgtest [02:16:12]: test dependencies: preparing testbed
160s Reading package lists...
160s Building dependency tree...
160s Reading state information...
160s Starting pkgProblemResolver with broken count: 0
160s Starting 2 pkgProblemResolver with broken count: 0
160s Done
160s The following NEW packages will be installed:
160s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35
160s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5
160s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8
160s libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblcms2-2
160s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7
160s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1
160s python-biopython-doc python3-all python3-biopython python3-biopython-sql
160s python3-cairo python3-freetype python3-numpy python3-numpy-dev python3-pil
160s python3-reportlab python3-rlpycairo sgml-base w3c-sgml-lib x11-common
160s xfonts-encodings xfonts-utils xml-core
160s 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded.
160s Need to get 48.5 MB of archives.
160s After this operation, 136 MB of additional disk space will be used.
160s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy-dev ppc64el 1:2.2.3+ds-5 [154 kB]
160s Get:2 http://ftpmaster.internal/ubuntu questing/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB]
160s Get:3 http://ftpmaster.internal/ubuntu questing/main ppc64el libgfortran5 ppc64el 15-20250404-0ubuntu1 [615 kB]
160s Get:4 http://ftpmaster.internal/ubuntu questing/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB]
160s Get:5 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy ppc64el 1:2.2.3+ds-5 [4835 kB]
161s Get:6 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
161s Get:7 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
161s Get:8 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB]
161s Get:9 http://ftpmaster.internal/ubuntu questing/main ppc64el x11-common all 1:7.7+23ubuntu4 [21.8 kB]
161s Get:10 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
161s Get:11 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB]
161s Get:12 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
161s Get:13 http://ftpmaster.internal/ubuntu questing/main ppc64el fontconfig-config ppc64el 2.15.0-2.2ubuntu1 [37.9 kB]
161s Get:14 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontconfig1 ppc64el 2.15.0-2.2ubuntu1 [187 kB]
161s Get:15 http://ftpmaster.internal/ubuntu questing/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
161s Get:16 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
161s Get:17 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
161s Get:18 http://ftpmaster.internal/ubuntu questing/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB]
161s Get:19 http://ftpmaster.internal/ubuntu questing/main ppc64el libcairo2 ppc64el 1.18.4-1 [746 kB]
161s Get:20 http://ftpmaster.internal/ubuntu questing/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB]
161s Get:21 http://ftpmaster.internal/ubuntu questing/main ppc64el libgomp1 ppc64el 15-20250404-0ubuntu1 [168 kB]
161s Get:22 http://ftpmaster.internal/ubuntu questing/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
161s Get:23 http://ftpmaster.internal/ubuntu questing/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB]
161s Get:24 http://ftpmaster.internal/ubuntu questing/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB]
161s Get:25 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB]
161s Get:26 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
161s Get:27 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
161s Get:28 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
161s Get:29 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libjs-sphinxdoc all 8.2.3-1 [27.8 kB]
161s Get:30 http://ftpmaster.internal/ubuntu questing/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB]
161s Get:31 http://ftpmaster.internal/ubuntu questing/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB]
161s Get:32 http://ftpmaster.internal/ubuntu questing/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB]
161s Get:33 http://ftpmaster.internal/ubuntu questing/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB]
161s Get:34 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
161s Get:35 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB]
161s Get:36 http://ftpmaster.internal/ubuntu questing/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu1 [283 kB]
161s Get:37 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB]
161s Get:38 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB]
161s Get:39 http://ftpmaster.internal/ubuntu questing/universe ppc64el python-biopython-doc all 1.85+dfsg-2build1 [18.2 MB]
161s Get:40 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-all ppc64el 3.13.3-1 [880 B]
161s Get:41 http://ftpmaster.internal/ubuntu questing/main ppc64el libopenjp2-7 ppc64el 2.5.3-2 [248 kB]
161s Get:42 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-pil ppc64el 11.1.0-5build1 [601 kB]
161s Get:43 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-cairo ppc64el 1.27.0-2 [129 kB]
161s Get:44 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB]
161s Get:45 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
161s Get:46 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-reportlab all 4.3.1-1 [1137 kB]
161s Get:47 http://ftpmaster.internal/ubuntu questing/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB]
161s Get:48 http://ftpmaster.internal/ubuntu questing/main ppc64el xml-core all 0.19 [20.3 kB]
161s Get:49 http://ftpmaster.internal/ubuntu questing/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
162s Get:50 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython ppc64el 1.85+dfsg-2build1 [1766 kB]
162s Get:51 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython-sql all 1.85+dfsg-2build1 [26.4 kB]
162s Fetched 48.5 MB in 1s (38.2 MB/s)
162s Selecting previously unselected package python3-numpy-dev:ppc64el.
162s (Reading database ...
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(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78710 files and directories currently installed.)
162s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_ppc64el.deb ...
162s Unpacking python3-numpy-dev:ppc64el (1:2.2.3+ds-5) ...
162s Selecting previously unselected package libblas3:ppc64el.
162s Preparing to unpack .../01-libblas3_3.12.1-2_ppc64el.deb ...
162s Unpacking libblas3:ppc64el (3.12.1-2) ...
162s Selecting previously unselected package libgfortran5:ppc64el.
162s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_ppc64el.deb ...
162s Unpacking libgfortran5:ppc64el (15-20250404-0ubuntu1) ...
162s Selecting previously unselected package liblapack3:ppc64el.
162s Preparing to unpack .../03-liblapack3_3.12.1-2_ppc64el.deb ...
162s Unpacking liblapack3:ppc64el (3.12.1-2) ...
162s Selecting previously unselected package python3-numpy.
162s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_ppc64el.deb ...
162s Unpacking python3-numpy (1:2.2.3+ds-5) ...
162s Selecting previously unselected package fonts-dejavu-mono.
162s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8_all.deb ...
162s Unpacking fonts-dejavu-mono (2.37-8) ...
162s Selecting previously unselected package fonts-dejavu-core.
162s Preparing to unpack .../06-fonts-dejavu-core_2.37-8_all.deb ...
162s Unpacking fonts-dejavu-core (2.37-8) ...
162s Selecting previously unselected package libfontenc1:ppc64el.
162s Preparing to unpack .../07-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ...
162s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ...
162s Selecting previously unselected package x11-common.
162s Preparing to unpack .../08-x11-common_1%3a7.7+23ubuntu4_all.deb ...
162s Unpacking x11-common (1:7.7+23ubuntu4) ...
162s Selecting previously unselected package xfonts-encodings.
162s Preparing to unpack .../09-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
162s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
162s Selecting previously unselected package xfonts-utils.
162s Preparing to unpack .../10-xfonts-utils_1%3a7.7+7_ppc64el.deb ...
162s Unpacking xfonts-utils (1:7.7+7) ...
162s Selecting previously unselected package fonts-urw-base35.
162s Preparing to unpack .../11-fonts-urw-base35_20200910-8_all.deb ...
162s Unpacking fonts-urw-base35 (20200910-8) ...
163s Selecting previously unselected package fontconfig-config.
163s Preparing to unpack .../12-fontconfig-config_2.15.0-2.2ubuntu1_ppc64el.deb ...
163s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
163s Selecting previously unselected package libfontconfig1:ppc64el.
163s Preparing to unpack .../13-libfontconfig1_2.15.0-2.2ubuntu1_ppc64el.deb ...
163s Unpacking libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ...
163s Selecting previously unselected package libpixman-1-0:ppc64el.
163s Preparing to unpack .../14-libpixman-1-0_0.44.0-3_ppc64el.deb ...
163s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ...
163s Selecting previously unselected package libxcb-render0:ppc64el.
163s Preparing to unpack .../15-libxcb-render0_1.17.0-2_ppc64el.deb ...
163s Unpacking libxcb-render0:ppc64el (1.17.0-2) ...
163s Selecting previously unselected package libxcb-shm0:ppc64el.
163s Preparing to unpack .../16-libxcb-shm0_1.17.0-2_ppc64el.deb ...
163s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ...
163s Selecting previously unselected package libxrender1:ppc64el.
163s Preparing to unpack .../17-libxrender1_1%3a0.9.12-1_ppc64el.deb ...
163s Unpacking libxrender1:ppc64el (1:0.9.12-1) ...
163s Selecting previously unselected package libcairo2:ppc64el.
163s Preparing to unpack .../18-libcairo2_1.18.4-1_ppc64el.deb ...
163s Unpacking libcairo2:ppc64el (1.18.4-1) ...
163s Selecting previously unselected package libdeflate0:ppc64el.
163s Preparing to unpack .../19-libdeflate0_1.23-2_ppc64el.deb ...
163s Unpacking libdeflate0:ppc64el (1.23-2) ...
163s Selecting previously unselected package libgomp1:ppc64el.
163s Preparing to unpack .../20-libgomp1_15-20250404-0ubuntu1_ppc64el.deb ...
163s Unpacking libgomp1:ppc64el (15-20250404-0ubuntu1) ...
163s Selecting previously unselected package libgraphite2-3:ppc64el.
163s Preparing to unpack .../21-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ...
163s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
163s Selecting previously unselected package libharfbuzz0b:ppc64el.
163s Preparing to unpack .../22-libharfbuzz0b_10.2.0-1_ppc64el.deb ...
163s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ...
163s Selecting previously unselected package libimagequant0:ppc64el.
163s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_ppc64el.deb ...
163s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ...
163s Selecting previously unselected package libjpeg-turbo8:ppc64el.
163s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ...
163s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
163s Selecting previously unselected package libjpeg8:ppc64el.
163s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
163s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
163s Selecting previously unselected package libjs-jquery.
163s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
163s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
163s Selecting previously unselected package libjs-underscore.
163s Preparing to unpack .../27-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
163s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
163s Selecting previously unselected package libjs-sphinxdoc.
163s Preparing to unpack .../28-libjs-sphinxdoc_8.2.3-1_all.deb ...
163s Unpacking libjs-sphinxdoc (8.2.3-1) ...
163s Selecting previously unselected package liblcms2-2:ppc64el.
163s Preparing to unpack .../29-liblcms2-2_2.16-2_ppc64el.deb ...
163s Unpacking liblcms2-2:ppc64el (2.16-2) ...
163s Selecting previously unselected package liblerc4:ppc64el.
163s Preparing to unpack .../30-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ...
163s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
163s Selecting previously unselected package libraqm0:ppc64el.
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163s Unpacking libraqm0:ppc64el (0.10.2-1) ...
163s Selecting previously unselected package libsharpyuv0:ppc64el.
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163s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ...
163s Selecting previously unselected package libjbig0:ppc64el.
163s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ...
163s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ...
163s Selecting previously unselected package libwebp7:ppc64el.
163s Preparing to unpack .../34-libwebp7_1.5.0-0.1_ppc64el.deb ...
163s Unpacking libwebp7:ppc64el (1.5.0-0.1) ...
163s Selecting previously unselected package libtiff6:ppc64el.
163s Preparing to unpack .../35-libtiff6_4.7.0-3ubuntu1_ppc64el.deb ...
163s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu1) ...
163s Selecting previously unselected package libwebpdemux2:ppc64el.
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163s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ...
163s Selecting previously unselected package libwebpmux3:ppc64el.
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163s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ...
163s Selecting previously unselected package python-biopython-doc.
163s Preparing to unpack .../38-python-biopython-doc_1.85+dfsg-2build1_all.deb ...
163s Unpacking python-biopython-doc (1.85+dfsg-2build1) ...
164s Selecting previously unselected package python3-all.
164s Preparing to unpack .../39-python3-all_3.13.3-1_ppc64el.deb ...
164s Unpacking python3-all (3.13.3-1) ...
164s Selecting previously unselected package libopenjp2-7:ppc64el.
164s Preparing to unpack .../40-libopenjp2-7_2.5.3-2_ppc64el.deb ...
164s Unpacking libopenjp2-7:ppc64el (2.5.3-2) ...
164s Selecting previously unselected package python3-pil:ppc64el.
164s Preparing to unpack .../41-python3-pil_11.1.0-5build1_ppc64el.deb ...
164s Unpacking python3-pil:ppc64el (11.1.0-5build1) ...
164s Selecting previously unselected package python3-cairo.
164s Preparing to unpack .../42-python3-cairo_1.27.0-2_ppc64el.deb ...
164s Unpacking python3-cairo (1.27.0-2) ...
164s Selecting previously unselected package python3-freetype.
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164s Unpacking python3-freetype (2.5.1-1) ...
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164s Unpacking python3-rlpycairo (0.3.0-3) ...
164s Selecting previously unselected package python3-reportlab.
164s Preparing to unpack .../45-python3-reportlab_4.3.1-1_all.deb ...
164s Unpacking python3-reportlab (4.3.1-1) ...
164s Selecting previously unselected package sgml-base.
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164s Unpacking sgml-base (1.31+nmu1) ...
164s Selecting previously unselected package xml-core.
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164s Unpacking xml-core (0.19) ...
164s Selecting previously unselected package w3c-sgml-lib.
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164s Unpacking w3c-sgml-lib (1.3-3) ...
164s Selecting previously unselected package python3-biopython.
164s Preparing to unpack .../49-python3-biopython_1.85+dfsg-2build1_ppc64el.deb ...
164s Unpacking python3-biopython (1.85+dfsg-2build1) ...
164s Selecting previously unselected package python3-biopython-sql.
164s Preparing to unpack .../50-python3-biopython-sql_1.85+dfsg-2build1_all.deb ...
164s Unpacking python3-biopython-sql (1.85+dfsg-2build1) ...
164s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
164s Setting up liblcms2-2:ppc64el (2.16-2) ...
164s Setting up libpixman-1-0:ppc64el (0.44.0-3) ...
164s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ...
164s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
164s Setting up libxrender1:ppc64el (1:0.9.12-1) ...
164s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
164s Setting up x11-common (1:7.7+23ubuntu4) ...
165s Setting up libdeflate0:ppc64el (1.23-2) ...
165s Setting up python3-all (3.13.3-1) ...
165s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
165s Setting up libgomp1:ppc64el (15-20250404-0ubuntu1) ...
165s Setting up python3-freetype (2.5.1-1) ...
165s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ...
165s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ...
165s Setting up libblas3:ppc64el (3.12.1-2) ...
165s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
165s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
165s Setting up libimagequant0:ppc64el (2.18.0-1build1) ...
165s Setting up fonts-dejavu-mono (2.37-8) ...
165s Setting up python3-numpy-dev:ppc64el (1:2.2.3+ds-5) ...
165s Setting up fonts-dejavu-core (2.37-8) ...
165s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
165s Setting up libgfortran5:ppc64el (15-20250404-0ubuntu1) ...
165s Setting up libwebp7:ppc64el (1.5.0-0.1) ...
165s Setting up libopenjp2-7:ppc64el (2.5.3-2) ...
165s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ...
165s Setting up sgml-base (1.31+nmu1) ...
165s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
165s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ...
165s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
165s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
165s Setting up liblapack3:ppc64el (3.12.1-2) ...
165s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
165s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ...
165s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ...
165s Setting up xfonts-utils (1:7.7+7) ...
165s Setting up libraqm0:ppc64el (0.10.2-1) ...
165s Setting up python3-numpy (1:2.2.3+ds-5) ...
167s Setting up libjs-sphinxdoc (8.2.3-1) ...
167s Setting up python-biopython-doc (1.85+dfsg-2build1) ...
167s Setting up libtiff6:ppc64el (4.7.0-3ubuntu1) ...
167s Setting up xml-core (0.19) ...
167s Setting up libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ...
167s Setting up fonts-urw-base35 (20200910-8) ...
167s Setting up libcairo2:ppc64el (1.18.4-1) ...
167s Setting up python3-pil:ppc64el (11.1.0-5build1) ...
168s Setting up python3-cairo (1.27.0-2) ...
168s Setting up python3-rlpycairo (0.3.0-3) ...
168s Setting up python3-reportlab (4.3.1-1) ...
168s Processing triggers for libc-bin (2.41-6ubuntu1) ...
169s Processing triggers for man-db (2.13.1-1) ...
170s Processing triggers for sgml-base (1.31+nmu1) ...
170s Setting up w3c-sgml-lib (1.3-3) ...
201s Setting up python3-biopython (1.85+dfsg-2build1) ...
202s Setting up python3-biopython-sql (1.85+dfsg-2build1) ...
203s autopkgtest [02:16:56]: test dependencies: sh debian/tests/run-unit-test
203s autopkgtest [02:16:56]: test dependencies: [-----------------------
203s cp: cannot stat '/usr/share/libcifpp/mmcif_pdbx.dic': No such file or directory
203s cp: cannot stat '/usr/share/libcifpp/mmcif_ma.dic': No such file or directory
205s mkdir: created directory 'Bio'
205s mkdir: created directory 'Bio/Align'
205s mkdir: created directory 'Bio/Align/substitution_matrices'
205s mkdir: created directory 'Bio/Align/substitution_matrices/data/'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22' -> 'Bio/Align/substitution_matrices/data/BENNER22'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6' -> 'Bio/Align/substitution_matrices/data/BENNER6'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74' -> 'Bio/Align/substitution_matrices/data/BENNER74'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTN' -> 'Bio/Align/substitution_matrices/data/BLASTN'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTP' -> 'Bio/Align/substitution_matrices/data/BLASTP'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45' -> 'Bio/Align/substitution_matrices/data/BLOSUM45'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50' -> 'Bio/Align/substitution_matrices/data/BLOSUM50'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' -> 'Bio/Align/substitution_matrices/data/BLOSUM62'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80' -> 'Bio/Align/substitution_matrices/data/BLOSUM80'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90' -> 'Bio/Align/substitution_matrices/data/BLOSUM90'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF' -> 'Bio/Align/substitution_matrices/data/DAYHOFF'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG' -> 'Bio/Align/substitution_matrices/data/FENG'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC' -> 'Bio/Align/substitution_matrices/data/GENETIC'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992' -> 'Bio/Align/substitution_matrices/data/GONNET1992'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70' -> 'Bio/Align/substitution_matrices/data/HOXD70'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON' -> 'Bio/Align/substitution_matrices/data/JOHNSON'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES' -> 'Bio/Align/substitution_matrices/data/JONES'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN' -> 'Bio/Align/substitution_matrices/data/LEVIN'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN' -> 'Bio/Align/substitution_matrices/data/MCLACHLAN'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78' -> 'Bio/Align/substitution_matrices/data/MDM78'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MEGABLAST' -> 'Bio/Align/substitution_matrices/data/MEGABLAST'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4' -> 'Bio/Align/substitution_matrices/data/NUC.4.4'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250' -> 'Bio/Align/substitution_matrices/data/PAM250'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30' -> 'Bio/Align/substitution_matrices/data/PAM30'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70' -> 'Bio/Align/substitution_matrices/data/PAM70'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO' -> 'Bio/Align/substitution_matrices/data/RAO'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER' -> 'Bio/Align/substitution_matrices/data/RISLER'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER' -> 'Bio/Align/substitution_matrices/data/SCHNEIDER'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR' -> 'Bio/Align/substitution_matrices/data/STR'
205s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS' -> 'Bio/Align/substitution_matrices/data/TRANS'
205s test_Ace ... ok
205s test_Affy ... ok
209s test_AlignIO ... ok
209s test_AlignIO_ClustalIO ... ok
209s test_AlignIO_EmbossIO ... ok
209s test_AlignIO_FastaIO ... ok
209s test_AlignIO_MauveIO ... ok
209s test_AlignIO_PhylipIO ... ok
209s test_AlignIO_convert ... ok
209s test_AlignInfo ... ok
209s test_Align_Alignment ... ok
209s test_Align_a2m ... ok
209s test_Align_bed ... ok
210s test_Align_bigbed ... ok
210s test_Align_bigmaf ... ok
211s test_Align_bigpsl ... ok
211s test_Align_chain ... ok
211s test_Align_clustal ... ok
215s test_Align_codonalign ... ok
215s test_Align_emboss ... ok
215s test_Align_exonerate ... ok
215s test_Align_fasta ... ok
215s test_Align_hhr ... ok
216s test_Align_maf ... ok
216s test_Align_mauve ... ok
216s test_Align_msf ... ok
216s test_Align_nexus ... ok
216s test_Align_phylip ... ok
217s test_Align_psl ... ok
217s test_Align_sam ... ok
219s test_Align_stockholm ... ok
220s test_Align_tabular ... ok
220s test_Application ... ok
220s test_BioSQL_MySQLdb_online ... skipping. internet not available
220s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
220s test_BioSQL_mysql_connector_online ... skipping. internet not available
220s test_BioSQL_psycopg2_online ... skipping. internet not available
225s test_BioSQL_sqlite3 ... ok
225s test_BioSQL_sqlite3_online ... skipping. internet not available
225s test_Blast_Record ... ok
226s test_Blast_parser ... ok
226s test_CAPS ... ok
226s test_Chi2 ... ok
226s test_ClustalOmega_tool ... skipping. Install clustalo if you want to use Clustal Omega from Biopython.
226s test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython.
226s test_Cluster ... ok
226s test_CodonTable ... ok
226s test_ColorSpiral ... ok
226s test_Compass ... ok
228s test_Consensus ... ok
228s test_Dialign_tool ... skipping. Install DIALIGN2-2 if you want to use the Bio.Align.Applications wrapper.
228s test_EMBL_unittest ... ok
228s test_Emboss ... skipping. $EMBOSS_ROOT='/usr/lib/emboss' which does not exist!
228s test_EmbossPrimer ... ok
232s test_Entrez ... ok
232s test_Entrez_online ... skipping. internet not available
233s test_Entrez_parser ... ok
233s test_Enzyme ... ok
233s test_ExPASy ... skipping. internet not available
233s test_Fasttree_tool ... skipping. Install FastTree and correctly set the file path to the program if you want to use it from Biopython.
233s test_File ... ok
233s test_GenBank ... /usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py:600: BiopythonWarning: Annotation 'Sequence Read Archive: SRX001885, SRX001121, SRX001531, SRX001530, SRX001529' too long
233s warnings.warn(f"Annotation {text!r} too long", BiopythonWarning)
233s ok
235s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica'
238s ok
238s test_GraphicsChromosome ... ok
238s test_GraphicsDistribution ... ok
239s test_GraphicsGeneral ... ok
240s test_HMMCasino ... ok
240s test_HMMGeneral ... ok
240s test_KEGG ... ok
240s test_KEGG_online ... skipping. internet not available
245s test_KGML_graphics ... ok
245s test_KGML_graphics_online ... skipping. internet not available
246s test_KGML_nographics ... ok
246s test_KeyWList ... ok
246s test_LogisticRegression ... ok
248s test_MafIO_index ... ok
248s test_Mafft_tool ... skipping. Install MAFFT if you want to use the Bio.Align.Applications wrapper.
248s test_MarkovModel ... ok
248s test_Medline ... ok
248s test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper.
249s test_NCBIXML ... Exception ignored in: <generator object parse at 0x700d8b6da650>
249s Traceback (most recent call last):
249s File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse
249s expat_parser.Parse(NULL, True)
249s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0
249s ok
249s test_NCBI_BLAST_tools ... skipping. Install the NCBI BLAST+ command line tools if you want to use the Bio.Blast.Applications wrapper.
249s test_NCBI_qblast ... ok
249s test_NMR ... ok
249s test_NaiveBayes ... ok
249s test_Nexus ... ok
249s test_PAML_baseml ... ok
250s test_PAML_codeml ... ok
250s test_PAML_yn00 ... ok
255s test_PDB_CEAligner ... ok
255s test_PDB_DSSP ... ok
255s test_PDB_Dice ... ok
255s test_PDB_Disordered ... ok
255s test_PDB_Exposure ... ok
256s test_PDB_FragmentMapper ... ok
258s test_PDB_KDTree ... ok
258s test_PDB_MMCIF2Dict ... ok
258s test_PDB_MMCIFIO ... ok
260s test_PDB_MMCIFParser ... ok
260s test_PDB_NACCESS ... ok
260s test_PDB_PDBIO ... ok
260s test_PDB_PDBList ... skipping. internet not available
267s test_PDB_PDBMLParser ... ok
267s test_PDB_PDBParser ... ok
267s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path
267s test_PDB_Polypeptide ... ok
267s test_PDB_QCPSuperimposer ... ok
271s test_PDB_SASA ... ok
272s test_PDB_SMCRA ... ok
272s test_PDB_Selection ... ok
272s test_PDB_StructureAlignment ... ok
272s test_PDB_Superimposer ... ok
272s test_PDB_alphafold_db ... skipping. internet not available
272s test_PDB_binary_cif ... skipping. Error: Install msgpack to use Bio.PDB.binaryCIF (e.g. pip install msgpack)
272s
272s test_PDB_internal_coords ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python)
272s
272s test_PDB_parse_pdb_header ... ok
272s test_PDB_vectors ... ok
272s test_PQR ... ok
272s test_Pathway ... ok
272s test_Phd ... ok
273s test_Phylo ... ok
273s test_PhyloXML ... ok
273s test_Phylo_CDAO ... skipping. Install RDFlib if you want to use the CDAO tree format.
273s test_Phylo_NeXML ... ok
273s test_Phylo_igraph ... skipping. Install igraph if you wish to use it with Bio.Phylo
273s test_Phylo_matplotlib ... skipping. Install matplotlib if you want to use Bio.Phylo._utils.
273s test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo
273s test_PopGen_GenePop_nodepend ... ok
273s test_Prank_tool ... skipping. Install PRANK if you want to use the Bio.Align.Applications wrapper.
273s test_Probcons_tool ... skipping. Install PROBCONS if you want to use the Bio.Align.Applications wrapper.
273s test_ProtParam ... ok
274s test_RCSBFormats ... ok
274s test_Restriction ... ok
274s test_SCOP_Astral ... ok
274s test_SCOP_Cla ... ok
274s test_SCOP_Des ... ok
274s test_SCOP_Dom ... ok
274s test_SCOP_Hie ... ok
274s test_SCOP_Raf ... ok
274s test_SCOP_Residues ... ok
274s test_SCOP_Scop ... ok
274s test_SVDSuperimposer ... ok
274s test_SearchIO_blast_tab ... ok
274s test_SearchIO_blast_tab_index ... ok
275s test_SearchIO_blast_xml ... ok
276s test_SearchIO_blast_xml_index ... ok
276s test_SearchIO_blat_psl ... ok
276s test_SearchIO_blat_psl_index ... ok
276s test_SearchIO_exonerate ... ok
276s test_SearchIO_exonerate_text_index ... ok
276s test_SearchIO_exonerate_vulgar_index ... ok
276s test_SearchIO_fasta_m10 ... ok
276s test_SearchIO_fasta_m10_index ... ok
277s test_SearchIO_hhsuite2_text ... ok
277s test_SearchIO_hmmer2_text ... ok
277s test_SearchIO_hmmer2_text_index ... ok
277s test_SearchIO_hmmer3_domtab ... ok
277s test_SearchIO_hmmer3_domtab_index ... ok
277s test_SearchIO_hmmer3_tab ... ok
277s test_SearchIO_hmmer3_tab_index ... ok
277s test_SearchIO_hmmer3_text ... ok
277s test_SearchIO_hmmer3_text_index ... ok
277s test_SearchIO_interproscan_xml ... ok
277s test_SearchIO_model ... ok
278s test_SearchIO_write ... ok
278s test_SeqFeature ... ok
295s test_SeqIO ... ok
296s test_SeqIO_AbiIO ... ok
296s test_SeqIO_FastaIO ... ok
296s test_SeqIO_Gck ... ok
296s test_SeqIO_Gfa ... ok
296s test_SeqIO_Insdc ... ok
296s test_SeqIO_NibIO ... ok
298s test_SeqIO_PdbIO ... ok
298s test_SeqIO_QualityIO ... ok
298s test_SeqIO_SeqXML ... ok
298s test_SeqIO_SffIO ... ok
298s test_SeqIO_SnapGene ... ok
300s test_SeqIO_TwoBitIO ... ok
300s test_SeqIO_UniprotIO ... ok
300s test_SeqIO_Xdna ... ok
300s test_SeqIO_features ... ok
319s test_SeqIO_index ... ok
319s test_SeqIO_online ... skipping. internet not available
319s test_SeqIO_write ... ok
319s test_SeqRecord ... ok
320s test_SeqUtils ... ok
321s test_Seq_objs ... ok
321s test_SwissProt ... ok
321s test_TCoffee_tool ... skipping. Install TCOFFEE if you want to use the Bio.Align.Applications wrapper.
321s test_TogoWS ... skipping. internet not available
322s test_TreeConstruction ... ok
322s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file
322s test_UniGene ... ok
322s test_UniProt ... skipping. internet not available
322s test_UniProt_GOA ... ok
322s test_align ... ok
323s test_align_substitution_matrices ... ok
325s test_bgzf ... ok
325s test_cellosaurus ... ok
331s test_codonalign ... ok
331s test_geo ... ok
331s test_kNN ... ok
331s test_motifs ... ok
331s test_motifs_online ... skipping. internet not available
332s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
332s warnings.warn(
332s ok
332s test_pairwise2_no_C ... ok
332s test_pairwise_aligner ... ok
332s test_pairwise_alignment_map ... ok
340s test_phenotype ... ok
340s test_phenotype_fit ... skipping. Install SciPy if you want to use Bio.phenotype fit functionality.
340s test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper.
340s test_prodoc ... ok
340s test_prosite ... ok
340s test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper.
340s test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython
340s test_seq ... ok
340s test_translate ... ok
340s Skipping any tests requiring internet access
340s Python version: 3.13.3 (main, Apr 8 2025, 19:55:40) [GCC 14.2.0]
340s Operating system: posix linux
340s ----------------------------------------------------------------------
340s Ran 218 tests in 135.099 seconds
340s
340s <sys>:0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'>
340s <sys>:0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'>
341s autopkgtest [02:19:14]: test dependencies: -----------------------]
341s autopkgtest [02:19:14]: test dependencies: - - - - - - - - - - results - - - - - - - - - -
341s dependencies PASS
342s autopkgtest [02:19:15]: test full_suite: preparing testbed
461s autopkgtest [02:21:14]: testbed dpkg architecture: ppc64el
462s autopkgtest [02:21:15]: testbed apt version: 3.0.0
462s autopkgtest [02:21:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup
462s autopkgtest [02:21:15]: testbed release detected to be: questing
463s autopkgtest [02:21:16]: updating testbed package index (apt update)
463s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
463s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
463s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
463s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
463s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [31.7 kB]
463s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [995 kB]
463s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [97.2 kB]
463s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el Packages [131 kB]
463s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el Packages [946 kB]
464s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse ppc64el Packages [18.6 kB]
464s Fetched 2330 kB in 1s (3150 kB/s)
465s Reading package lists...
465s autopkgtest [02:21:18]: upgrading testbed (apt dist-upgrade and autopurge)
465s Reading package lists...
465s Building dependency tree...
465s Reading state information...
466s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
466s Starting 2 pkgProblemResolver with broken count: 0
466s Done
466s Entering ResolveByKeep
466s
466s Calculating upgrade...
466s The following packages will be upgraded:
466s libperl5.40 perl perl-base perl-modules-5.40
466s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
466s Need to get 10.4 MB of archives.
466s After this operation, 65.5 kB disk space will be freed.
466s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libperl5.40 ppc64el 5.40.1-3 [4949 kB]
467s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl ppc64el 5.40.1-3 [262 kB]
467s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl-base ppc64el 5.40.1-3 [1923 kB]
467s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl-modules-5.40 all 5.40.1-3 [3217 kB]
467s Fetched 10.4 MB in 0s (21.8 MB/s)
468s (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78710 files and directories currently installed.)
468s Preparing to unpack .../libperl5.40_5.40.1-3_ppc64el.deb ...
468s Unpacking libperl5.40:ppc64el (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
468s Preparing to unpack .../perl_5.40.1-3_ppc64el.deb ...
468s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
468s Preparing to unpack .../perl-base_5.40.1-3_ppc64el.deb ...
468s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
469s Setting up perl-base (5.40.1-3) ...
469s (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78710 files and directories currently installed.)
469s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ...
469s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
469s Setting up perl-modules-5.40 (5.40.1-3) ...
469s Setting up libperl5.40:ppc64el (5.40.1-3) ...
469s Setting up perl (5.40.1-3) ...
469s Processing triggers for man-db (2.13.1-1) ...
471s Processing triggers for libc-bin (2.41-6ubuntu1) ...
471s Reading package lists...
471s Building dependency tree...
471s Reading state information...
471s Starting pkgProblemResolver with broken count: 0
471s Starting 2 pkgProblemResolver with broken count: 0
471s Done
472s Solving dependencies...
472s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
474s Reading package lists...
474s Building dependency tree...
474s Reading state information...
474s Starting pkgProblemResolver with broken count: 0
474s Starting 2 pkgProblemResolver with broken count: 0
474s Done
475s The following NEW packages will be installed:
475s autoconf automake autopoint autotools-dev blt build-essential bwa clustalo
475s cpp cpp-14 cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper
475s debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign
475s docutils-common dssp dwz emboss emboss-data emboss-lib fasttree flex
475s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
475s fonts-lato fonts-lmodern fonts-lyx fonts-urw-base35 g++ g++-14
475s g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14
475s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext ghostscript
475s hevea hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16
475s intltool-debian libamd3 libaom3 libapache-pom-java libarchive-zip-perl
475s libargtable2-0 libarpack2t64 libasan8 libavahi-client3 libavahi-common-data
475s libavahi-common3 libblas3 libcairo2 libcc1-0 libcifpp-data libcifpp7
475s libcolamd3 libcommons-logging-java libcommons-parent-java libcups2t64
475s libde265-0 libdebhelper-perl libdeflate0 libexpat1-dev libfftw3-double3
475s libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1
475s libgcc-14-dev libgd3 libgfortran5 libglpk40 libgomp1 libgraphite2-3
475s libgs-common libgs10 libgs10-common libharfbuzz0b libheif-plugin-aomdec
475s libheif-plugin-libde265 libheif1 libhpdf-2.3.0 libice6 libidn12
475s libigraph3t64 libijs-0.35 libimagequant0 libisl23 libitm1 libjbig0
475s libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui
475s libjs-sphinxdoc libjs-underscore libjson-perl libkpathsea6 liblapack3
475s liblbfgsb0 liblcms2-2 liblerc4 liblqr-1-0 liblsan0 libltdl7
475s libmagickcore-7.q16-10 libmagickwand-7.q16-10 libmbedcrypto16 libmbedtls21
475s libmbedx509-7 libmpc3 libmpfi0 libmysqlclient24 libnetpbm11t64 libopenjp2-7
475s libpaper-utils libpaper2 libpdfbox-java libpixman-1-0 libplfit0 libpotrace0
475s libpq5 libptexenc1 libpython3-all-dev libpython3-dev libpython3.13-dev
475s libqhull-r8.0 libquadmath0 libraqm0 libraw23t64 libsharpyuv0 libsm6
475s libstdc++-14-dev libsuitesparseconfig7 libsynctex2 libtcl8.6 libteckit0
475s libtexlua53-5 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7
475s libwebpdemux2 libwebpmux3 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6
475s libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libzzip-0-13t64 m4
475s mafft mysql-common ncbi-blast+ ncbi-data netpbm phylip po-debconf
475s poppler-data prank preview-latex-style probcons python-biopython-doc
475s python-matplotlib-data python3-alabaster python3-all python3-all-dev
475s python3-biopython python3-biopython-sql python3-brotli python3-cairo
475s python3-contourpy python3-cycler python3-decorator python3-defusedxml
475s python3-dev python3-docutils python3-fonttools python3-freetype python3-fs
475s python3-igraph python3-imagesize python3-kiwisolver python3-lxml python3-lz4
475s python3-matplotlib python3-mmtf python3-mpmath python3-msgpack
475s python3-mysqldb python3-networkx python3-numpy python3-numpy-dev
475s python3-numpydoc python3-pil python3-pil.imagetk python3-platformdirs
475s python3-rdflib python3-reportlab python3-rlpycairo python3-roman
475s python3-roman-numerals python3-scipy python3-snowballstemmer python3-sphinx
475s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy
475s python3-tabulate python3-texttable python3-tk python3-ufolib2 python3.13-dev
475s python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common t-coffee
475s t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended
475s texlive-latex-base texlive-latex-extra texlive-latex-recommended
475s texlive-pictures tk8.6-blt2.5 unicode-data w3c-sgml-lib wise wise-data
475s x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zlib1g-dev
475s 0 upgraded, 257 newly installed, 0 to remove and 0 not upgraded.
475s Need to get 423 MB of archives.
475s After this operation, 1902 MB of additional disk space will be used.
475s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el m4 ppc64el 1.4.19-7 [279 kB]
475s Get:2 http://ftpmaster.internal/ubuntu questing/main ppc64el flex ppc64el 2.6.4-8.2build1 [303 kB]
475s Get:3 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-lato all 2.015-1 [2781 kB]
475s Get:4 http://ftpmaster.internal/ubuntu questing/main ppc64el libgomp1 ppc64el 15-20250404-0ubuntu1 [168 kB]
475s Get:5 http://ftpmaster.internal/ubuntu questing/main ppc64el libfftw3-double3 ppc64el 3.3.10-2fakesync1build1 [443 kB]
475s Get:6 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
475s Get:7 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
475s Get:8 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB]
475s Get:9 http://ftpmaster.internal/ubuntu questing/main ppc64el x11-common all 1:7.7+23ubuntu4 [21.8 kB]
475s Get:10 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
475s Get:11 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB]
475s Get:12 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
476s Get:13 http://ftpmaster.internal/ubuntu questing/main ppc64el fontconfig-config ppc64el 2.15.0-2.2ubuntu1 [37.9 kB]
476s Get:14 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontconfig1 ppc64el 2.15.0-2.2ubuntu1 [187 kB]
476s Get:15 http://ftpmaster.internal/ubuntu questing/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB]
476s Get:16 http://ftpmaster.internal/ubuntu questing/main ppc64el libaom3 ppc64el 3.12.1-1 [2942 kB]
476s Get:17 http://ftpmaster.internal/ubuntu questing/main ppc64el libheif-plugin-aomdec ppc64el 1.19.8-1 [11.7 kB]
476s Get:18 http://ftpmaster.internal/ubuntu questing/main ppc64el libde265-0 ppc64el 1.0.15-1build5 [288 kB]
476s Get:19 http://ftpmaster.internal/ubuntu questing/main ppc64el libheif-plugin-libde265 ppc64el 1.19.8-1 [9184 B]
476s Get:20 http://ftpmaster.internal/ubuntu questing/main ppc64el libheif1 ppc64el 1.19.8-1 [463 kB]
476s Get:21 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
476s Get:22 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB]
476s Get:23 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
476s Get:24 http://ftpmaster.internal/ubuntu questing/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB]
476s Get:25 http://ftpmaster.internal/ubuntu questing/universe ppc64el liblqr-1-0 ppc64el 0.4.2-2.1build2 [43.4 kB]
476s Get:26 http://ftpmaster.internal/ubuntu questing/main ppc64el libltdl7 ppc64el 2.5.4-4 [50.3 kB]
476s Get:27 http://ftpmaster.internal/ubuntu questing/main ppc64el libopenjp2-7 ppc64el 2.5.3-2 [248 kB]
476s Get:28 http://ftpmaster.internal/ubuntu questing/main ppc64el libraw23t64 ppc64el 0.21.4-2 [510 kB]
476s Get:29 http://ftpmaster.internal/ubuntu questing/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB]
476s Get:30 http://ftpmaster.internal/ubuntu questing/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB]
476s Get:31 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB]
476s Get:32 http://ftpmaster.internal/ubuntu questing/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu1 [283 kB]
476s Get:33 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB]
476s Get:34 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB]
476s Get:35 http://ftpmaster.internal/ubuntu questing/universe ppc64el imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [69.7 kB]
476s Get:36 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmagickcore-7.q16-10 ppc64el 8:7.1.1.43+dfsg1-1 [2474 kB]
476s Get:37 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmagickwand-7.q16-10 ppc64el 8:7.1.1.43+dfsg1-1 [316 kB]
476s Get:38 http://ftpmaster.internal/ubuntu questing/main ppc64el poppler-data all 0.4.12-1 [2060 kB]
476s Get:39 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy-dev ppc64el 1:2.2.3+ds-5 [154 kB]
476s Get:40 http://ftpmaster.internal/ubuntu questing/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB]
476s Get:41 http://ftpmaster.internal/ubuntu questing/main ppc64el libgfortran5 ppc64el 15-20250404-0ubuntu1 [615 kB]
476s Get:42 http://ftpmaster.internal/ubuntu questing/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB]
476s Get:43 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy ppc64el 1:2.2.3+ds-5 [4835 kB]
477s Get:44 http://ftpmaster.internal/ubuntu questing/main ppc64el autoconf all 2.72-3ubuntu1 [383 kB]
477s Get:45 http://ftpmaster.internal/ubuntu questing/main ppc64el autotools-dev all 20240727.1 [43.4 kB]
477s Get:46 http://ftpmaster.internal/ubuntu questing/main ppc64el automake all 1:1.17-3ubuntu1 [572 kB]
477s Get:47 http://ftpmaster.internal/ubuntu questing/main ppc64el autopoint all 0.23.1-1 [619 kB]
477s Get:48 http://ftpmaster.internal/ubuntu questing/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB]
477s Get:49 http://ftpmaster.internal/ubuntu questing/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB]
477s Get:50 http://ftpmaster.internal/ubuntu questing/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB]
477s Get:51 http://ftpmaster.internal/ubuntu questing/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B]
477s Get:52 http://ftpmaster.internal/ubuntu questing/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB]
477s Get:53 http://ftpmaster.internal/ubuntu questing/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-8 [778 kB]
477s Get:54 http://ftpmaster.internal/ubuntu questing/main ppc64el blt ppc64el 2.5.3+dfsg-8 [4830 B]
477s Get:55 http://ftpmaster.internal/ubuntu questing/main ppc64el libisl23 ppc64el 0.27-1 [882 kB]
477s Get:56 http://ftpmaster.internal/ubuntu questing/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB]
477s Get:57 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu2 [10.5 MB]
477s Get:58 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-14 ppc64el 14.2.0-19ubuntu2 [1036 B]
477s Get:59 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B]
477s Get:60 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB]
477s Get:61 http://ftpmaster.internal/ubuntu questing/main ppc64el libcc1-0 ppc64el 15-20250404-0ubuntu1 [48.6 kB]
477s Get:62 http://ftpmaster.internal/ubuntu questing/main ppc64el libitm1 ppc64el 15-20250404-0ubuntu1 [32.3 kB]
477s Get:63 http://ftpmaster.internal/ubuntu questing/main ppc64el libasan8 ppc64el 15-20250404-0ubuntu1 [3007 kB]
477s Get:64 http://ftpmaster.internal/ubuntu questing/main ppc64el liblsan0 ppc64el 15-20250404-0ubuntu1 [1374 kB]
477s Get:65 http://ftpmaster.internal/ubuntu questing/main ppc64el libtsan2 ppc64el 15-20250404-0ubuntu1 [2732 kB]
477s Get:66 http://ftpmaster.internal/ubuntu questing/main ppc64el libubsan1 ppc64el 15-20250404-0ubuntu1 [1232 kB]
477s Get:67 http://ftpmaster.internal/ubuntu questing/main ppc64el libquadmath0 ppc64el 15-20250404-0ubuntu1 [160 kB]
477s Get:68 http://ftpmaster.internal/ubuntu questing/main ppc64el libgcc-14-dev ppc64el 14.2.0-19ubuntu2 [1618 kB]
477s Get:69 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu2 [20.6 MB]
478s Get:70 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-14 ppc64el 14.2.0-19ubuntu2 [540 kB]
478s Get:71 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B]
478s Get:72 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B]
478s Get:73 http://ftpmaster.internal/ubuntu questing/main ppc64el libstdc++-14-dev ppc64el 14.2.0-19ubuntu2 [2679 kB]
478s Get:74 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu2 [12.0 MB]
478s Get:75 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-14 ppc64el 14.2.0-19ubuntu2 [23.0 kB]
478s Get:76 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B]
478s Get:77 http://ftpmaster.internal/ubuntu questing/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B]
478s Get:78 http://ftpmaster.internal/ubuntu questing/main ppc64el build-essential ppc64el 12.12ubuntu1 [5094 B]
478s Get:79 http://ftpmaster.internal/ubuntu questing/universe ppc64el bwa ppc64el 0.7.18-1 [231 kB]
478s Get:80 http://ftpmaster.internal/ubuntu questing/universe ppc64el libargtable2-0 ppc64el 13-4 [18.5 kB]
478s Get:81 http://ftpmaster.internal/ubuntu questing/universe ppc64el clustalo ppc64el 1.2.4-8build1 [246 kB]
478s Get:82 http://ftpmaster.internal/ubuntu questing/main ppc64el libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB]
478s Get:83 http://ftpmaster.internal/ubuntu questing/main ppc64el libtool all 2.5.4-4 [168 kB]
478s Get:84 http://ftpmaster.internal/ubuntu questing/main ppc64el dh-autoreconf all 20 [16.1 kB]
478s Get:85 http://ftpmaster.internal/ubuntu questing/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB]
478s Get:86 http://ftpmaster.internal/ubuntu questing/main ppc64el libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB]
478s Get:87 http://ftpmaster.internal/ubuntu questing/main ppc64el dh-strip-nondeterminism all 1.14.1-2 [5064 B]
478s Get:88 http://ftpmaster.internal/ubuntu questing/main ppc64el debugedit ppc64el 1:5.1-2 [52.4 kB]
478s Get:89 http://ftpmaster.internal/ubuntu questing/main ppc64el dwz ppc64el 0.15-1build6 [142 kB]
478s Get:90 http://ftpmaster.internal/ubuntu questing/main ppc64el gettext ppc64el 0.23.1-1 [1155 kB]
478s Get:91 http://ftpmaster.internal/ubuntu questing/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB]
478s Get:92 http://ftpmaster.internal/ubuntu questing/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB]
478s Get:93 http://ftpmaster.internal/ubuntu questing/main ppc64el debhelper all 13.24.1ubuntu2 [895 kB]
478s Get:94 http://ftpmaster.internal/ubuntu questing/universe ppc64el dh-python all 6.20250414 [119 kB]
478s Get:95 http://ftpmaster.internal/ubuntu questing/universe ppc64el dialign ppc64el 2.2.1-13 [158 kB]
478s Get:96 http://ftpmaster.internal/ubuntu questing/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB]
478s Get:97 http://ftpmaster.internal/ubuntu questing/main ppc64el xml-core all 0.19 [20.3 kB]
478s Get:98 http://ftpmaster.internal/ubuntu questing/main ppc64el docutils-common all 0.21.2+dfsg-2 [131 kB]
478s Get:99 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcifpp-data all 7.0.9-1 [481 kB]
478s Get:100 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcifpp7 ppc64el 7.0.9-1 [1127 kB]
478s Get:101 http://ftpmaster.internal/ubuntu questing/universe ppc64el dssp ppc64el 4.4.10-1 [793 kB]
478s Get:102 http://ftpmaster.internal/ubuntu questing/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB]
478s Get:103 http://ftpmaster.internal/ubuntu questing/main ppc64el libxpm4 ppc64el 1:3.5.17-1build2 [49.9 kB]
478s Get:104 http://ftpmaster.internal/ubuntu questing/main ppc64el libgd3 ppc64el 2.3.3-13ubuntu1 [165 kB]
478s Get:105 http://ftpmaster.internal/ubuntu questing/universe ppc64el libhpdf-2.3.0 ppc64el 2.3.0+dfsg-1build3 [460 kB]
478s Get:106 http://ftpmaster.internal/ubuntu questing/main ppc64el mysql-common all 5.8+1.1.1ubuntu1 [6922 B]
478s Get:107 http://ftpmaster.internal/ubuntu questing/main ppc64el libmysqlclient24 ppc64el 8.4.5-0ubuntu1 [1296 kB]
478s Get:108 http://ftpmaster.internal/ubuntu questing/main ppc64el libpq5 ppc64el 17.4-1 [174 kB]
478s Get:109 http://ftpmaster.internal/ubuntu questing/universe ppc64el emboss-lib ppc64el 6.6.0+dfsg-15ubuntu2 [3471 kB]
479s Get:110 http://ftpmaster.internal/ubuntu questing/universe ppc64el emboss-data all 6.6.0+dfsg-15ubuntu2 [61.0 MB]
480s Get:111 http://ftpmaster.internal/ubuntu questing/universe ppc64el emboss ppc64el 6.6.0+dfsg-15ubuntu2 [1044 kB]
480s Get:112 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
480s Get:113 http://ftpmaster.internal/ubuntu questing/universe ppc64el fonts-lmodern all 2.005-1 [4799 kB]
480s Get:114 http://ftpmaster.internal/ubuntu questing/universe ppc64el fonts-lyx all 2.4.3-1 [171 kB]
480s Get:115 http://ftpmaster.internal/ubuntu questing/main ppc64el libgs-common all 10.05.0dfsg1-0ubuntu1 [176 kB]
480s Get:116 http://ftpmaster.internal/ubuntu questing/main ppc64el libgs10-common all 10.05.0dfsg1-0ubuntu1 [490 kB]
480s Get:117 http://ftpmaster.internal/ubuntu questing/main ppc64el libavahi-common-data ppc64el 0.8-16ubuntu2 [31.0 kB]
480s Get:118 http://ftpmaster.internal/ubuntu questing/main ppc64el libavahi-common3 ppc64el 0.8-16ubuntu2 [25.9 kB]
480s Get:119 http://ftpmaster.internal/ubuntu questing/main ppc64el libavahi-client3 ppc64el 0.8-16ubuntu2 [30.9 kB]
480s Get:120 http://ftpmaster.internal/ubuntu questing/main ppc64el libcups2t64 ppc64el 2.4.12-0ubuntu1 [348 kB]
480s Get:121 http://ftpmaster.internal/ubuntu questing/main ppc64el libidn12 ppc64el 1.43-1 [63.5 kB]
480s Get:122 http://ftpmaster.internal/ubuntu questing/main ppc64el libijs-0.35 ppc64el 0.35-15.2 [16.8 kB]
480s Get:123 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig2dec0 ppc64el 0.20-1build3 [90.9 kB]
480s Get:124 http://ftpmaster.internal/ubuntu questing/main ppc64el libpaper2 ppc64el 2.2.5-0.3 [18.0 kB]
480s Get:125 http://ftpmaster.internal/ubuntu questing/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB]
480s Get:126 http://ftpmaster.internal/ubuntu questing/main ppc64el libsm6 ppc64el 2:1.2.6-1 [18.6 kB]
480s Get:127 http://ftpmaster.internal/ubuntu questing/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB]
480s Get:128 http://ftpmaster.internal/ubuntu questing/main ppc64el libgs10 ppc64el 10.05.0dfsg1-0ubuntu1 [5025 kB]
480s Get:129 http://ftpmaster.internal/ubuntu questing/main ppc64el ghostscript ppc64el 10.05.0dfsg1-0ubuntu1 [42.9 kB]
480s Get:130 http://ftpmaster.internal/ubuntu questing/universe ppc64el libnetpbm11t64 ppc64el 2:11.10.02-1 [141 kB]
480s Get:131 http://ftpmaster.internal/ubuntu questing/universe ppc64el netpbm ppc64el 2:11.10.02-1 [2588 kB]
480s Get:132 http://ftpmaster.internal/ubuntu questing/universe ppc64el tex-common all 6.19 [29.8 kB]
480s Get:133 http://ftpmaster.internal/ubuntu questing/main ppc64el libpaper-utils ppc64el 2.2.5-0.3 [15.6 kB]
480s Get:134 http://ftpmaster.internal/ubuntu questing/universe ppc64el libkpathsea6 ppc64el 2024.20240313.70630+ds-6 [72.3 kB]
480s Get:135 http://ftpmaster.internal/ubuntu questing/universe ppc64el libptexenc1 ppc64el 2024.20240313.70630+ds-6 [44.9 kB]
480s Get:136 http://ftpmaster.internal/ubuntu questing/universe ppc64el libsynctex2 ppc64el 2024.20240313.70630+ds-6 [68.2 kB]
480s Get:137 http://ftpmaster.internal/ubuntu questing/universe ppc64el libtexlua53-5 ppc64el 2024.20240313.70630+ds-6 [163 kB]
480s Get:138 http://ftpmaster.internal/ubuntu questing/main ppc64el t1utils ppc64el 1.41-4build3 [69.7 kB]
480s Get:139 http://ftpmaster.internal/ubuntu questing/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
480s Get:140 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
480s Get:141 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
480s Get:142 http://ftpmaster.internal/ubuntu questing/main ppc64el libcairo2 ppc64el 1.18.4-1 [746 kB]
480s Get:143 http://ftpmaster.internal/ubuntu questing/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
480s Get:144 http://ftpmaster.internal/ubuntu questing/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB]
480s Get:145 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmpfi0 ppc64el 1.5.4+ds-4 [38.6 kB]
480s Get:146 http://ftpmaster.internal/ubuntu questing/universe ppc64el libpotrace0 ppc64el 1.16-2build1 [23.0 kB]
480s Get:147 http://ftpmaster.internal/ubuntu questing/universe ppc64el libteckit0 ppc64el 2.5.12+ds1-1 [399 kB]
480s Get:148 http://ftpmaster.internal/ubuntu questing/main ppc64el libxmu6 ppc64el 2:1.1.3-3build2 [56.8 kB]
480s Get:149 http://ftpmaster.internal/ubuntu questing/main ppc64el libxaw7 ppc64el 2:1.0.16-1 [230 kB]
480s Get:150 http://ftpmaster.internal/ubuntu questing/main ppc64el libxi6 ppc64el 2:1.8.2-1 [37.9 kB]
480s Get:151 http://ftpmaster.internal/ubuntu questing/universe ppc64el libzzip-0-13t64 ppc64el 0.13.78+dfsg.1-0.1 [33.4 kB]
480s Get:152 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-binaries ppc64el 2024.20240313.70630+ds-6 [12.4 MB]
481s Get:153 http://ftpmaster.internal/ubuntu questing/main ppc64el xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
481s Get:154 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-base all 2024.20250309-1 [22.7 MB]
481s Get:155 http://ftpmaster.internal/ubuntu questing/main ppc64el hicolor-icon-theme all 0.18-2 [13.3 kB]
481s Get:156 http://ftpmaster.internal/ubuntu questing/universe ppc64el imagemagick-7.q16 ppc64el 8:7.1.1.43+dfsg1-1 [704 kB]
481s Get:157 http://ftpmaster.internal/ubuntu questing/universe ppc64el imagemagick ppc64el 8:7.1.1.43+dfsg1-1 [14.1 kB]
481s Get:158 http://ftpmaster.internal/ubuntu questing/universe ppc64el hevea ppc64el 2.36-2 [2153 kB]
481s Get:159 http://ftpmaster.internal/ubuntu questing/main ppc64el libsuitesparseconfig7 ppc64el 1:7.10.1+dfsg-1 [21.6 kB]
481s Get:160 http://ftpmaster.internal/ubuntu questing/universe ppc64el libamd3 ppc64el 1:7.10.1+dfsg-1 [44.8 kB]
481s Get:161 http://ftpmaster.internal/ubuntu questing/universe ppc64el libapache-pom-java all 33-2 [5874 B]
481s Get:162 http://ftpmaster.internal/ubuntu questing/universe ppc64el libarpack2t64 ppc64el 3.9.1-6 [107 kB]
481s Get:163 http://ftpmaster.internal/ubuntu questing/main ppc64el libcolamd3 ppc64el 1:7.10.1+dfsg-1 [29.8 kB]
481s Get:164 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcommons-parent-java all 56-1 [10.7 kB]
481s Get:165 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB]
481s Get:166 http://ftpmaster.internal/ubuntu questing/main ppc64el libexpat1-dev ppc64el 2.7.1-1 [151 kB]
481s Get:167 http://ftpmaster.internal/ubuntu questing/universe ppc64el libglpk40 ppc64el 5.0-1build2 [467 kB]
481s Get:168 http://ftpmaster.internal/ubuntu questing/universe ppc64el libplfit0 ppc64el 0.9.6+ds-2ubuntu1 [36.4 kB]
481s Get:169 http://ftpmaster.internal/ubuntu questing/universe ppc64el libigraph3t64 ppc64el 0.10.15+ds-3 [1132 kB]
481s Get:170 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
481s Get:171 http://ftpmaster.internal/ubuntu questing/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
481s Get:172 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
481s Get:173 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libjs-sphinxdoc all 8.2.3-1 [27.8 kB]
481s Get:174 http://ftpmaster.internal/ubuntu questing/main ppc64el libjson-perl all 4.10000-1 [81.9 kB]
481s Get:175 http://ftpmaster.internal/ubuntu questing/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB]
481s Get:176 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmbedcrypto16 ppc64el 3.6.2-3ubuntu1 [293 kB]
481s Get:177 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmbedx509-7 ppc64el 3.6.2-3ubuntu1 [40.1 kB]
481s Get:178 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmbedtls21 ppc64el 3.6.2-3ubuntu1 [135 kB]
481s Get:179 http://ftpmaster.internal/ubuntu questing/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB]
481s Get:180 http://ftpmaster.internal/ubuntu questing/main ppc64el libpython3.13-dev ppc64el 3.13.3-1 [5982 kB]
482s Get:181 http://ftpmaster.internal/ubuntu questing/main ppc64el libpython3-dev ppc64el 3.13.3-1 [10.8 kB]
482s Get:182 http://ftpmaster.internal/ubuntu questing/main ppc64el libpython3-all-dev ppc64el 3.13.3-1 [904 B]
482s Get:183 http://ftpmaster.internal/ubuntu questing/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB]
482s Get:184 http://ftpmaster.internal/ubuntu questing/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB]
482s Get:185 http://ftpmaster.internal/ubuntu questing/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu4 [191 kB]
482s Get:186 http://ftpmaster.internal/ubuntu questing/universe ppc64el mafft ppc64el 7.505-1 [990 kB]
482s Get:187 http://ftpmaster.internal/ubuntu questing/universe ppc64el ncbi-data all 6.1.20170106+dfsg2-5 [3966 kB]
482s Get:188 http://ftpmaster.internal/ubuntu questing/universe ppc64el ncbi-blast+ ppc64el 2.16.0+ds-6build1 [16.1 MB]
482s Get:189 http://ftpmaster.internal/ubuntu questing/universe ppc64el phylip ppc64el 1:3.697+dfsg-4build1 [952 kB]
482s Get:190 http://ftpmaster.internal/ubuntu questing/universe ppc64el prank ppc64el 0.0.170427+dfsg-3 [353 kB]
482s Get:191 http://ftpmaster.internal/ubuntu questing/universe ppc64el preview-latex-style all 13.2-1 [347 kB]
482s Get:192 http://ftpmaster.internal/ubuntu questing/universe ppc64el probcons ppc64el 1.12-14 [174 kB]
482s Get:193 http://ftpmaster.internal/ubuntu questing/universe ppc64el python-biopython-doc all 1.85+dfsg-2build1 [18.2 MB]
482s Get:194 http://ftpmaster.internal/ubuntu questing/universe ppc64el python-matplotlib-data all 3.8.3-7build1 [2934 kB]
482s Get:195 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-all ppc64el 3.13.3-1 [880 B]
482s Get:196 http://ftpmaster.internal/ubuntu questing/main ppc64el python3.13-dev ppc64el 3.13.3-1 [508 kB]
482s Get:197 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-dev ppc64el 3.13.3-1 [26.7 kB]
482s Get:198 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-all-dev ppc64el 3.13.3-1 [898 B]
482s Get:199 http://ftpmaster.internal/ubuntu questing/main ppc64el python3.13-tk ppc64el 3.13.3-1 [107 kB]
482s Get:200 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-tk ppc64el 3.13.3-1 [9854 B]
482s Get:201 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-pil.imagetk ppc64el 11.1.0-5build1 [10.3 kB]
482s Get:202 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-pil ppc64el 11.1.0-5build1 [601 kB]
482s Get:203 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-cairo ppc64el 1.27.0-2 [129 kB]
482s Get:204 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB]
482s Get:205 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
482s Get:206 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-reportlab all 4.3.1-1 [1137 kB]
482s Get:207 http://ftpmaster.internal/ubuntu questing/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
483s Get:208 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython ppc64el 1.85+dfsg-2build1 [1766 kB]
483s Get:209 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython-sql all 1.85+dfsg-2build1 [26.4 kB]
483s Get:210 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-brotli ppc64el 1.1.0-2build4 [422 kB]
483s Get:211 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-contourpy ppc64el 1.3.1-1build1 [218 kB]
483s Get:212 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-cycler all 0.12.1-1 [9716 B]
483s Get:213 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB]
483s Get:214 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-defusedxml all 0.7.1-3 [42.2 kB]
483s Get:215 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-roman all 5.0-1 [10.3 kB]
483s Get:216 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-docutils all 0.21.2+dfsg-2 [409 kB]
483s Get:217 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-platformdirs all 4.3.7-1 [16.9 kB]
483s Get:218 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-fs all 2.4.16-7 [90.8 kB]
483s Get:219 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-lxml ppc64el 5.3.2-1 [1393 kB]
483s Get:220 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-lz4 ppc64el 4.4.0+dfsg-2 [28.1 kB]
483s Get:221 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-scipy ppc64el 1.14.1-4ubuntu2 [19.4 MB]
483s Get:222 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB]
483s Get:223 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-sympy all 1.13.3-5 [4229 kB]
483s Get:224 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB]
483s Get:225 http://ftpmaster.internal/ubuntu questing/universe ppc64el unicode-data all 15.1.0-1 [8878 kB]
483s Get:226 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-fonttools ppc64el 4.55.3-2build1 [1521 kB]
483s Get:227 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-imagesize all 1.4.1-1 [6844 B]
483s Get:228 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3build1 [59.5 kB]
483s Get:229 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-matplotlib ppc64el 3.8.3-7build1 [17.4 MB]
483s Get:230 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-msgpack ppc64el 1.0.3-3build4 [89.5 kB]
483s Get:231 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-mmtf all 1.1.3-1 [16.2 kB]
483s Get:232 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-mysqldb ppc64el 1.4.6-2build6 [50.4 kB]
483s Get:233 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
484s Get:234 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el sphinx-common all 8.2.3-1 [656 kB]
484s Get:235 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-alabaster all 0.7.16-0.1 [18.5 kB]
484s Get:236 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-roman-numerals all 3.1.0-1ubuntu1 [8432 B]
484s Get:237 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
484s Get:238 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el python3-sphinx all 8.2.3-1 [482 kB]
484s Get:239 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-tabulate all 0.9.0-1 [45.3 kB]
484s Get:240 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-numpydoc all 1.8.0-1 [52.4 kB]
484s Get:241 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-rdflib all 7.1.1-2 [426 kB]
484s Get:242 http://ftpmaster.internal/ubuntu questing/main ppc64el sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB]
484s Get:243 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-sphinxcontrib.jquery all 4.1-5 [6678 B]
484s Get:244 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB]
484s Get:245 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-texttable all 1.7.0-1 [11.2 kB]
484s Get:246 http://ftpmaster.internal/ubuntu questing/universe ppc64el t-coffee ppc64el 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1022 kB]
484s Get:247 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-fonts-recommended all 2024.20250309-1 [4974 kB]
484s Get:248 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-latex-base all 2024.20250309-1 [1276 kB]
484s Get:249 http://ftpmaster.internal/ubuntu questing/universe ppc64el libfontbox-java all 1:1.8.16-5 [208 kB]
484s Get:250 http://ftpmaster.internal/ubuntu questing/universe ppc64el libpdfbox-java all 1:1.8.16-5 [5521 kB]
484s Get:251 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-latex-recommended all 2024.20250309-1 [8727 kB]
484s Get:252 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-pictures all 2024.20250309-1 [17.0 MB]
484s Get:253 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-latex-extra all 2024.20250309-2 [24.8 MB]
485s Get:254 http://ftpmaster.internal/ubuntu questing/universe ppc64el wise-data all 2.4.1-25 [83.0 kB]
485s Get:255 http://ftpmaster.internal/ubuntu questing/universe ppc64el wise ppc64el 2.4.1-25 [1081 kB]
485s Get:256 http://ftpmaster.internal/ubuntu questing/universe ppc64el fasttree ppc64el 2.1.11-2 [218 kB]
485s Get:257 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-igraph ppc64el 0.11.8+ds-1build1 [360 kB]
485s Preconfiguring packages ...
486s Fetched 423 MB in 10s (41.3 MB/s)
486s Selecting previously unselected package m4.
486s (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
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486s Preparing to unpack .../000-m4_1.4.19-7_ppc64el.deb ...
486s Unpacking m4 (1.4.19-7) ...
486s Selecting previously unselected package flex.
486s Preparing to unpack .../001-flex_2.6.4-8.2build1_ppc64el.deb ...
486s Unpacking flex (2.6.4-8.2build1) ...
486s Selecting previously unselected package fonts-lato.
486s Preparing to unpack .../002-fonts-lato_2.015-1_all.deb ...
486s Unpacking fonts-lato (2.015-1) ...
486s Selecting previously unselected package libgomp1:ppc64el.
486s Preparing to unpack .../003-libgomp1_15-20250404-0ubuntu1_ppc64el.deb ...
486s Unpacking libgomp1:ppc64el (15-20250404-0ubuntu1) ...
486s Selecting previously unselected package libfftw3-double3:ppc64el.
486s Preparing to unpack .../004-libfftw3-double3_3.3.10-2fakesync1build1_ppc64el.deb ...
486s Unpacking libfftw3-double3:ppc64el (3.3.10-2fakesync1build1) ...
486s Selecting previously unselected package fonts-dejavu-mono.
486s Preparing to unpack .../005-fonts-dejavu-mono_2.37-8_all.deb ...
486s Unpacking fonts-dejavu-mono (2.37-8) ...
486s Selecting previously unselected package fonts-dejavu-core.
486s Preparing to unpack .../006-fonts-dejavu-core_2.37-8_all.deb ...
486s Unpacking fonts-dejavu-core (2.37-8) ...
486s Selecting previously unselected package libfontenc1:ppc64el.
486s Preparing to unpack .../007-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ...
486s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ...
486s Selecting previously unselected package x11-common.
486s Preparing to unpack .../008-x11-common_1%3a7.7+23ubuntu4_all.deb ...
486s Unpacking x11-common (1:7.7+23ubuntu4) ...
486s Selecting previously unselected package xfonts-encodings.
486s Preparing to unpack .../009-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
486s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
486s Selecting previously unselected package xfonts-utils.
486s Preparing to unpack .../010-xfonts-utils_1%3a7.7+7_ppc64el.deb ...
486s Unpacking xfonts-utils (1:7.7+7) ...
486s Selecting previously unselected package fonts-urw-base35.
486s Preparing to unpack .../011-fonts-urw-base35_20200910-8_all.deb ...
486s Unpacking fonts-urw-base35 (20200910-8) ...
486s Selecting previously unselected package fontconfig-config.
486s Preparing to unpack .../012-fontconfig-config_2.15.0-2.2ubuntu1_ppc64el.deb ...
486s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
486s Selecting previously unselected package libfontconfig1:ppc64el.
486s Preparing to unpack .../013-libfontconfig1_2.15.0-2.2ubuntu1_ppc64el.deb ...
486s Unpacking libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ...
486s Selecting previously unselected package libsharpyuv0:ppc64el.
486s Preparing to unpack .../014-libsharpyuv0_1.5.0-0.1_ppc64el.deb ...
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486s Selecting previously unselected package libaom3:ppc64el.
486s Preparing to unpack .../015-libaom3_3.12.1-1_ppc64el.deb ...
486s Unpacking libaom3:ppc64el (3.12.1-1) ...
486s Selecting previously unselected package libheif-plugin-aomdec:ppc64el.
486s Preparing to unpack .../016-libheif-plugin-aomdec_1.19.8-1_ppc64el.deb ...
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486s Selecting previously unselected package libde265-0:ppc64el.
486s Preparing to unpack .../017-libde265-0_1.0.15-1build5_ppc64el.deb ...
486s Unpacking libde265-0:ppc64el (1.0.15-1build5) ...
486s Selecting previously unselected package libheif-plugin-libde265:ppc64el.
486s Preparing to unpack .../018-libheif-plugin-libde265_1.19.8-1_ppc64el.deb ...
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486s Selecting previously unselected package libheif1:ppc64el.
486s Preparing to unpack .../019-libheif1_1.19.8-1_ppc64el.deb ...
486s Unpacking libheif1:ppc64el (1.19.8-1) ...
486s Selecting previously unselected package libjbig0:ppc64el.
487s Preparing to unpack .../020-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ...
487s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ...
487s Selecting previously unselected package libjpeg-turbo8:ppc64el.
487s Preparing to unpack .../021-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ...
487s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
487s Selecting previously unselected package libjpeg8:ppc64el.
487s Preparing to unpack .../022-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
487s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
487s Selecting previously unselected package liblcms2-2:ppc64el.
487s Preparing to unpack .../023-liblcms2-2_2.16-2_ppc64el.deb ...
487s Unpacking liblcms2-2:ppc64el (2.16-2) ...
487s Selecting previously unselected package liblqr-1-0:ppc64el.
487s Preparing to unpack .../024-liblqr-1-0_0.4.2-2.1build2_ppc64el.deb ...
487s Unpacking liblqr-1-0:ppc64el (0.4.2-2.1build2) ...
487s Selecting previously unselected package libltdl7:ppc64el.
487s Preparing to unpack .../025-libltdl7_2.5.4-4_ppc64el.deb ...
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487s Selecting previously unselected package libopenjp2-7:ppc64el.
487s Preparing to unpack .../026-libopenjp2-7_2.5.3-2_ppc64el.deb ...
487s Unpacking libopenjp2-7:ppc64el (2.5.3-2) ...
487s Selecting previously unselected package libraw23t64:ppc64el.
487s Preparing to unpack .../027-libraw23t64_0.21.4-2_ppc64el.deb ...
487s Unpacking libraw23t64:ppc64el (0.21.4-2) ...
487s Selecting previously unselected package libdeflate0:ppc64el.
487s Preparing to unpack .../028-libdeflate0_1.23-2_ppc64el.deb ...
487s Unpacking libdeflate0:ppc64el (1.23-2) ...
487s Selecting previously unselected package liblerc4:ppc64el.
487s Preparing to unpack .../029-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ...
487s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
487s Selecting previously unselected package libwebp7:ppc64el.
487s Preparing to unpack .../030-libwebp7_1.5.0-0.1_ppc64el.deb ...
487s Unpacking libwebp7:ppc64el (1.5.0-0.1) ...
487s Selecting previously unselected package libtiff6:ppc64el.
487s Preparing to unpack .../031-libtiff6_4.7.0-3ubuntu1_ppc64el.deb ...
487s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu1) ...
487s Selecting previously unselected package libwebpdemux2:ppc64el.
487s Preparing to unpack .../032-libwebpdemux2_1.5.0-0.1_ppc64el.deb ...
487s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ...
487s Selecting previously unselected package libwebpmux3:ppc64el.
487s Preparing to unpack .../033-libwebpmux3_1.5.0-0.1_ppc64el.deb ...
487s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ...
487s Selecting previously unselected package imagemagick-7-common.
487s Preparing to unpack .../034-imagemagick-7-common_8%3a7.1.1.43+dfsg1-1_all.deb ...
487s Unpacking imagemagick-7-common (8:7.1.1.43+dfsg1-1) ...
487s Selecting previously unselected package libmagickcore-7.q16-10:ppc64el.
487s Preparing to unpack .../035-libmagickcore-7.q16-10_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ...
487s Unpacking libmagickcore-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ...
487s Selecting previously unselected package libmagickwand-7.q16-10:ppc64el.
487s Preparing to unpack .../036-libmagickwand-7.q16-10_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ...
487s Unpacking libmagickwand-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ...
487s Selecting previously unselected package poppler-data.
487s Preparing to unpack .../037-poppler-data_0.4.12-1_all.deb ...
487s Unpacking poppler-data (0.4.12-1) ...
487s Selecting previously unselected package python3-numpy-dev:ppc64el.
487s Preparing to unpack .../038-python3-numpy-dev_1%3a2.2.3+ds-5_ppc64el.deb ...
487s Unpacking python3-numpy-dev:ppc64el (1:2.2.3+ds-5) ...
487s Selecting previously unselected package libblas3:ppc64el.
487s Preparing to unpack .../039-libblas3_3.12.1-2_ppc64el.deb ...
487s Unpacking libblas3:ppc64el (3.12.1-2) ...
487s Selecting previously unselected package libgfortran5:ppc64el.
487s Preparing to unpack .../040-libgfortran5_15-20250404-0ubuntu1_ppc64el.deb ...
487s Unpacking libgfortran5:ppc64el (15-20250404-0ubuntu1) ...
487s Selecting previously unselected package liblapack3:ppc64el.
487s Preparing to unpack .../041-liblapack3_3.12.1-2_ppc64el.deb ...
487s Unpacking liblapack3:ppc64el (3.12.1-2) ...
487s Selecting previously unselected package python3-numpy.
487s Preparing to unpack .../042-python3-numpy_1%3a2.2.3+ds-5_ppc64el.deb ...
487s Unpacking python3-numpy (1:2.2.3+ds-5) ...
487s Selecting previously unselected package autoconf.
487s Preparing to unpack .../043-autoconf_2.72-3ubuntu1_all.deb ...
487s Unpacking autoconf (2.72-3ubuntu1) ...
487s Selecting previously unselected package autotools-dev.
487s Preparing to unpack .../044-autotools-dev_20240727.1_all.deb ...
487s Unpacking autotools-dev (20240727.1) ...
487s Selecting previously unselected package automake.
487s Preparing to unpack .../045-automake_1%3a1.17-3ubuntu1_all.deb ...
487s Unpacking automake (1:1.17-3ubuntu1) ...
487s Selecting previously unselected package autopoint.
487s Preparing to unpack .../046-autopoint_0.23.1-1_all.deb ...
487s Unpacking autopoint (0.23.1-1) ...
487s Selecting previously unselected package libtcl8.6:ppc64el.
487s Preparing to unpack .../047-libtcl8.6_8.6.16+dfsg-1_ppc64el.deb ...
487s Unpacking libtcl8.6:ppc64el (8.6.16+dfsg-1) ...
487s Selecting previously unselected package libxrender1:ppc64el.
487s Preparing to unpack .../048-libxrender1_1%3a0.9.12-1_ppc64el.deb ...
487s Unpacking libxrender1:ppc64el (1:0.9.12-1) ...
487s Selecting previously unselected package libxft2:ppc64el.
487s Preparing to unpack .../049-libxft2_2.3.6-1build1_ppc64el.deb ...
487s Unpacking libxft2:ppc64el (2.3.6-1build1) ...
488s Selecting previously unselected package libxss1:ppc64el.
488s Preparing to unpack .../050-libxss1_1%3a1.2.3-1build3_ppc64el.deb ...
488s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ...
488s Selecting previously unselected package libtk8.6:ppc64el.
488s Preparing to unpack .../051-libtk8.6_8.6.16-1_ppc64el.deb ...
488s Unpacking libtk8.6:ppc64el (8.6.16-1) ...
488s Selecting previously unselected package tk8.6-blt2.5.
488s Preparing to unpack .../052-tk8.6-blt2.5_2.5.3+dfsg-8_ppc64el.deb ...
488s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ...
488s Selecting previously unselected package blt.
488s Preparing to unpack .../053-blt_2.5.3+dfsg-8_ppc64el.deb ...
488s Unpacking blt (2.5.3+dfsg-8) ...
488s Selecting previously unselected package libisl23:ppc64el.
488s Preparing to unpack .../054-libisl23_0.27-1_ppc64el.deb ...
488s Unpacking libisl23:ppc64el (0.27-1) ...
488s Selecting previously unselected package libmpc3:ppc64el.
488s Preparing to unpack .../055-libmpc3_1.3.1-1build2_ppc64el.deb ...
488s Unpacking libmpc3:ppc64el (1.3.1-1build2) ...
488s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu.
488s Preparing to unpack .../056-cpp-14-powerpc64le-linux-gnu_14.2.0-19ubuntu2_ppc64el.deb ...
488s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
488s Selecting previously unselected package cpp-14.
488s Preparing to unpack .../057-cpp-14_14.2.0-19ubuntu2_ppc64el.deb ...
488s Unpacking cpp-14 (14.2.0-19ubuntu2) ...
488s Selecting previously unselected package cpp-powerpc64le-linux-gnu.
488s Preparing to unpack .../058-cpp-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
488s Unpacking cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
488s Selecting previously unselected package cpp.
488s Preparing to unpack .../059-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
488s Unpacking cpp (4:14.2.0-1ubuntu1) ...
488s Selecting previously unselected package libcc1-0:ppc64el.
488s Preparing to unpack .../060-libcc1-0_15-20250404-0ubuntu1_ppc64el.deb ...
488s Unpacking libcc1-0:ppc64el (15-20250404-0ubuntu1) ...
488s Selecting previously unselected package libitm1:ppc64el.
488s Preparing to unpack .../061-libitm1_15-20250404-0ubuntu1_ppc64el.deb ...
488s Unpacking libitm1:ppc64el (15-20250404-0ubuntu1) ...
488s Selecting previously unselected package libasan8:ppc64el.
488s Preparing to unpack .../062-libasan8_15-20250404-0ubuntu1_ppc64el.deb ...
488s Unpacking libasan8:ppc64el (15-20250404-0ubuntu1) ...
488s Selecting previously unselected package liblsan0:ppc64el.
488s Preparing to unpack .../063-liblsan0_15-20250404-0ubuntu1_ppc64el.deb ...
488s Unpacking liblsan0:ppc64el (15-20250404-0ubuntu1) ...
488s Selecting previously unselected package libtsan2:ppc64el.
488s Preparing to unpack .../064-libtsan2_15-20250404-0ubuntu1_ppc64el.deb ...
488s Unpacking libtsan2:ppc64el (15-20250404-0ubuntu1) ...
488s Selecting previously unselected package libubsan1:ppc64el.
488s Preparing to unpack .../065-libubsan1_15-20250404-0ubuntu1_ppc64el.deb ...
488s Unpacking libubsan1:ppc64el (15-20250404-0ubuntu1) ...
488s Selecting previously unselected package libquadmath0:ppc64el.
488s Preparing to unpack .../066-libquadmath0_15-20250404-0ubuntu1_ppc64el.deb ...
488s Unpacking libquadmath0:ppc64el (15-20250404-0ubuntu1) ...
488s Selecting previously unselected package libgcc-14-dev:ppc64el.
488s Preparing to unpack .../067-libgcc-14-dev_14.2.0-19ubuntu2_ppc64el.deb ...
488s Unpacking libgcc-14-dev:ppc64el (14.2.0-19ubuntu2) ...
488s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu.
488s Preparing to unpack .../068-gcc-14-powerpc64le-linux-gnu_14.2.0-19ubuntu2_ppc64el.deb ...
488s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
489s Selecting previously unselected package gcc-14.
489s Preparing to unpack .../069-gcc-14_14.2.0-19ubuntu2_ppc64el.deb ...
489s Unpacking gcc-14 (14.2.0-19ubuntu2) ...
489s Selecting previously unselected package gcc-powerpc64le-linux-gnu.
489s Preparing to unpack .../070-gcc-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
489s Unpacking gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
489s Selecting previously unselected package gcc.
489s Preparing to unpack .../071-gcc_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
489s Unpacking gcc (4:14.2.0-1ubuntu1) ...
489s Selecting previously unselected package libstdc++-14-dev:ppc64el.
489s Preparing to unpack .../072-libstdc++-14-dev_14.2.0-19ubuntu2_ppc64el.deb ...
489s Unpacking libstdc++-14-dev:ppc64el (14.2.0-19ubuntu2) ...
489s Selecting previously unselected package g++-14-powerpc64le-linux-gnu.
489s Preparing to unpack .../073-g++-14-powerpc64le-linux-gnu_14.2.0-19ubuntu2_ppc64el.deb ...
489s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
489s Selecting previously unselected package g++-14.
489s Preparing to unpack .../074-g++-14_14.2.0-19ubuntu2_ppc64el.deb ...
489s Unpacking g++-14 (14.2.0-19ubuntu2) ...
489s Selecting previously unselected package g++-powerpc64le-linux-gnu.
489s Preparing to unpack .../075-g++-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
489s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
489s Selecting previously unselected package g++.
489s Preparing to unpack .../076-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
489s Unpacking g++ (4:14.2.0-1ubuntu1) ...
489s Selecting previously unselected package build-essential.
489s Preparing to unpack .../077-build-essential_12.12ubuntu1_ppc64el.deb ...
489s Unpacking build-essential (12.12ubuntu1) ...
489s Selecting previously unselected package bwa.
489s Preparing to unpack .../078-bwa_0.7.18-1_ppc64el.deb ...
489s Unpacking bwa (0.7.18-1) ...
489s Selecting previously unselected package libargtable2-0:ppc64el.
489s Preparing to unpack .../079-libargtable2-0_13-4_ppc64el.deb ...
489s Unpacking libargtable2-0:ppc64el (13-4) ...
489s Selecting previously unselected package clustalo.
489s Preparing to unpack .../080-clustalo_1.2.4-8build1_ppc64el.deb ...
489s Unpacking clustalo (1.2.4-8build1) ...
489s Selecting previously unselected package libdebhelper-perl.
489s Preparing to unpack .../081-libdebhelper-perl_13.24.1ubuntu2_all.deb ...
489s Unpacking libdebhelper-perl (13.24.1ubuntu2) ...
489s Selecting previously unselected package libtool.
489s Preparing to unpack .../082-libtool_2.5.4-4_all.deb ...
489s Unpacking libtool (2.5.4-4) ...
489s Selecting previously unselected package dh-autoreconf.
489s Preparing to unpack .../083-dh-autoreconf_20_all.deb ...
489s Unpacking dh-autoreconf (20) ...
489s Selecting previously unselected package libarchive-zip-perl.
489s Preparing to unpack .../084-libarchive-zip-perl_1.68-1_all.deb ...
489s Unpacking libarchive-zip-perl (1.68-1) ...
489s Selecting previously unselected package libfile-stripnondeterminism-perl.
489s Preparing to unpack .../085-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
489s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
490s Selecting previously unselected package dh-strip-nondeterminism.
490s Preparing to unpack .../086-dh-strip-nondeterminism_1.14.1-2_all.deb ...
490s Unpacking dh-strip-nondeterminism (1.14.1-2) ...
490s Selecting previously unselected package debugedit.
490s Preparing to unpack .../087-debugedit_1%3a5.1-2_ppc64el.deb ...
490s Unpacking debugedit (1:5.1-2) ...
490s Selecting previously unselected package dwz.
490s Preparing to unpack .../088-dwz_0.15-1build6_ppc64el.deb ...
490s Unpacking dwz (0.15-1build6) ...
490s Selecting previously unselected package gettext.
490s Preparing to unpack .../089-gettext_0.23.1-1_ppc64el.deb ...
490s Unpacking gettext (0.23.1-1) ...
490s Selecting previously unselected package intltool-debian.
490s Preparing to unpack .../090-intltool-debian_0.35.0+20060710.6_all.deb ...
490s Unpacking intltool-debian (0.35.0+20060710.6) ...
490s Selecting previously unselected package po-debconf.
490s Preparing to unpack .../091-po-debconf_1.0.21+nmu1_all.deb ...
490s Unpacking po-debconf (1.0.21+nmu1) ...
490s Selecting previously unselected package debhelper.
490s Preparing to unpack .../092-debhelper_13.24.1ubuntu2_all.deb ...
490s Unpacking debhelper (13.24.1ubuntu2) ...
490s Selecting previously unselected package dh-python.
490s Preparing to unpack .../093-dh-python_6.20250414_all.deb ...
490s Unpacking dh-python (6.20250414) ...
490s Selecting previously unselected package dialign.
490s Preparing to unpack .../094-dialign_2.2.1-13_ppc64el.deb ...
490s Unpacking dialign (2.2.1-13) ...
490s Selecting previously unselected package sgml-base.
490s Preparing to unpack .../095-sgml-base_1.31+nmu1_all.deb ...
490s Unpacking sgml-base (1.31+nmu1) ...
490s Selecting previously unselected package xml-core.
490s Preparing to unpack .../096-xml-core_0.19_all.deb ...
490s Unpacking xml-core (0.19) ...
490s Selecting previously unselected package docutils-common.
490s Preparing to unpack .../097-docutils-common_0.21.2+dfsg-2_all.deb ...
490s Unpacking docutils-common (0.21.2+dfsg-2) ...
490s Selecting previously unselected package libcifpp-data.
490s Preparing to unpack .../098-libcifpp-data_7.0.9-1_all.deb ...
490s Unpacking libcifpp-data (7.0.9-1) ...
490s Selecting previously unselected package libcifpp7:ppc64el.
490s Preparing to unpack .../099-libcifpp7_7.0.9-1_ppc64el.deb ...
490s Unpacking libcifpp7:ppc64el (7.0.9-1) ...
490s Selecting previously unselected package dssp.
490s Preparing to unpack .../100-dssp_4.4.10-1_ppc64el.deb ...
490s Unpacking dssp (4.4.10-1) ...
490s Selecting previously unselected package libimagequant0:ppc64el.
490s Preparing to unpack .../101-libimagequant0_2.18.0-1build1_ppc64el.deb ...
490s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ...
490s Selecting previously unselected package libxpm4:ppc64el.
490s Preparing to unpack .../102-libxpm4_1%3a3.5.17-1build2_ppc64el.deb ...
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490s Selecting previously unselected package libgd3:ppc64el.
490s Preparing to unpack .../103-libgd3_2.3.3-13ubuntu1_ppc64el.deb ...
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490s Selecting previously unselected package libhpdf-2.3.0:ppc64el.
490s Preparing to unpack .../104-libhpdf-2.3.0_2.3.0+dfsg-1build3_ppc64el.deb ...
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490s Selecting previously unselected package mysql-common.
490s Preparing to unpack .../105-mysql-common_5.8+1.1.1ubuntu1_all.deb ...
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490s Selecting previously unselected package libmysqlclient24:ppc64el.
490s Preparing to unpack .../106-libmysqlclient24_8.4.5-0ubuntu1_ppc64el.deb ...
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490s Selecting previously unselected package libpq5:ppc64el.
490s Preparing to unpack .../107-libpq5_17.4-1_ppc64el.deb ...
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490s Selecting previously unselected package emboss-lib.
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495s Preparing to unpack .../110-emboss_6.6.0+dfsg-15ubuntu2_ppc64el.deb ...
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495s Selecting previously unselected package fonts-font-awesome.
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495s Selecting previously unselected package fonts-lmodern.
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495s Selecting previously unselected package libgs-common.
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495s Selecting previously unselected package libgs10-common.
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495s Selecting previously unselected package libavahi-common-data:ppc64el.
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495s Selecting previously unselected package libavahi-client3:ppc64el.
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495s Selecting previously unselected package libcups2t64:ppc64el.
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495s Selecting previously unselected package libidn12:ppc64el.
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495s Selecting previously unselected package libijs-0.35:ppc64el.
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495s Selecting previously unselected package libjbig2dec0:ppc64el.
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495s Selecting previously unselected package libpaper2:ppc64el.
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495s Selecting previously unselected package libice6:ppc64el.
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495s Selecting previously unselected package libsm6:ppc64el.
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496s Selecting previously unselected package libxt6t64:ppc64el.
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496s Selecting previously unselected package libgs10:ppc64el.
496s Preparing to unpack .../127-libgs10_10.05.0dfsg1-0ubuntu1_ppc64el.deb ...
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496s Selecting previously unselected package ghostscript.
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496s Selecting previously unselected package libnetpbm11t64:ppc64el.
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496s Selecting previously unselected package tex-common.
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496s Selecting previously unselected package libkpathsea6:ppc64el.
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496s Selecting previously unselected package libptexenc1:ppc64el.
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496s Selecting previously unselected package libsynctex2:ppc64el.
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496s Selecting previously unselected package libtexlua53-5:ppc64el.
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496s Selecting previously unselected package t1utils.
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496s Unpacking t1utils (1.41-4build3) ...
496s Selecting previously unselected package libpixman-1-0:ppc64el.
496s Preparing to unpack .../138-libpixman-1-0_0.44.0-3_ppc64el.deb ...
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497s Selecting previously unselected package libxcb-render0:ppc64el.
497s Preparing to unpack .../139-libxcb-render0_1.17.0-2_ppc64el.deb ...
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497s Selecting previously unselected package libxcb-shm0:ppc64el.
497s Preparing to unpack .../140-libxcb-shm0_1.17.0-2_ppc64el.deb ...
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497s Selecting previously unselected package libcairo2:ppc64el.
497s Preparing to unpack .../141-libcairo2_1.18.4-1_ppc64el.deb ...
497s Unpacking libcairo2:ppc64el (1.18.4-1) ...
497s Selecting previously unselected package libgraphite2-3:ppc64el.
497s Preparing to unpack .../142-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ...
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497s Selecting previously unselected package libharfbuzz0b:ppc64el.
497s Preparing to unpack .../143-libharfbuzz0b_10.2.0-1_ppc64el.deb ...
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497s Selecting previously unselected package libmpfi0:ppc64el.
497s Preparing to unpack .../144-libmpfi0_1.5.4+ds-4_ppc64el.deb ...
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497s Selecting previously unselected package libpotrace0:ppc64el.
497s Preparing to unpack .../145-libpotrace0_1.16-2build1_ppc64el.deb ...
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497s Selecting previously unselected package libteckit0:ppc64el.
497s Preparing to unpack .../146-libteckit0_2.5.12+ds1-1_ppc64el.deb ...
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497s Selecting previously unselected package libxmu6:ppc64el.
497s Preparing to unpack .../147-libxmu6_2%3a1.1.3-3build2_ppc64el.deb ...
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497s Selecting previously unselected package libxaw7:ppc64el.
497s Preparing to unpack .../148-libxaw7_2%3a1.0.16-1_ppc64el.deb ...
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497s Selecting previously unselected package libxi6:ppc64el.
497s Preparing to unpack .../149-libxi6_2%3a1.8.2-1_ppc64el.deb ...
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497s Selecting previously unselected package libzzip-0-13t64:ppc64el.
497s Preparing to unpack .../150-libzzip-0-13t64_0.13.78+dfsg.1-0.1_ppc64el.deb ...
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497s Selecting previously unselected package texlive-binaries.
497s Preparing to unpack .../151-texlive-binaries_2024.20240313.70630+ds-6_ppc64el.deb ...
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497s Selecting previously unselected package xdg-utils.
497s Preparing to unpack .../152-xdg-utils_1.2.1-2ubuntu1_all.deb ...
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497s Selecting previously unselected package texlive-base.
497s Preparing to unpack .../153-texlive-base_2024.20250309-1_all.deb ...
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498s Selecting previously unselected package hicolor-icon-theme.
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499s Selecting previously unselected package imagemagick-7.q16.
499s Preparing to unpack .../155-imagemagick-7.q16_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ...
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499s Selecting previously unselected package imagemagick.
499s Preparing to unpack .../156-imagemagick_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ...
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499s Selecting previously unselected package hevea.
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499s Selecting previously unselected package libsuitesparseconfig7:ppc64el.
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499s Selecting previously unselected package libamd3:ppc64el.
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499s Selecting previously unselected package libapache-pom-java.
499s Preparing to unpack .../160-libapache-pom-java_33-2_all.deb ...
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499s Selecting previously unselected package libarpack2t64:ppc64el.
499s Preparing to unpack .../161-libarpack2t64_3.9.1-6_ppc64el.deb ...
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499s Selecting previously unselected package libcolamd3:ppc64el.
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499s Selecting previously unselected package libcommons-parent-java.
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499s Selecting previously unselected package libcommons-logging-java.
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499s Selecting previously unselected package libexpat1-dev:ppc64el.
499s Preparing to unpack .../165-libexpat1-dev_2.7.1-1_ppc64el.deb ...
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499s Selecting previously unselected package libglpk40:ppc64el.
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499s Selecting previously unselected package libplfit0:ppc64el.
499s Preparing to unpack .../167-libplfit0_0.9.6+ds-2ubuntu1_ppc64el.deb ...
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499s Selecting previously unselected package libigraph3t64:ppc64el.
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499s Selecting previously unselected package libjs-jquery.
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499s Selecting previously unselected package libjs-jquery-ui.
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499s Selecting previously unselected package libjs-underscore.
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499s Selecting previously unselected package libjs-sphinxdoc.
499s Preparing to unpack .../172-libjs-sphinxdoc_8.2.3-1_all.deb ...
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499s Selecting previously unselected package libjson-perl.
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499s Selecting previously unselected package liblbfgsb0:ppc64el.
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499s Selecting previously unselected package libmbedcrypto16:ppc64el.
499s Preparing to unpack .../175-libmbedcrypto16_3.6.2-3ubuntu1_ppc64el.deb ...
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499s Selecting previously unselected package libmbedx509-7:ppc64el.
499s Preparing to unpack .../176-libmbedx509-7_3.6.2-3ubuntu1_ppc64el.deb ...
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499s Selecting previously unselected package libmbedtls21:ppc64el.
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499s Selecting previously unselected package zlib1g-dev:ppc64el.
499s Preparing to unpack .../178-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ...
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499s Selecting previously unselected package libpython3.13-dev:ppc64el.
499s Preparing to unpack .../179-libpython3.13-dev_3.13.3-1_ppc64el.deb ...
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500s Selecting previously unselected package libpython3-dev:ppc64el.
500s Preparing to unpack .../180-libpython3-dev_3.13.3-1_ppc64el.deb ...
500s Unpacking libpython3-dev:ppc64el (3.13.3-1) ...
500s Selecting previously unselected package libpython3-all-dev:ppc64el.
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500s Selecting previously unselected package libqhull-r8.0:ppc64el.
500s Preparing to unpack .../182-libqhull-r8.0_2020.2-6build1_ppc64el.deb ...
500s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ...
500s Selecting previously unselected package libraqm0:ppc64el.
500s Preparing to unpack .../183-libraqm0_0.10.2-1_ppc64el.deb ...
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500s Selecting previously unselected package libxslt1.1:ppc64el.
500s Preparing to unpack .../184-libxslt1.1_1.1.39-0exp1ubuntu4_ppc64el.deb ...
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500s Selecting previously unselected package mafft.
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500s Unpacking mafft (7.505-1) ...
500s Selecting previously unselected package ncbi-data.
500s Preparing to unpack .../186-ncbi-data_6.1.20170106+dfsg2-5_all.deb ...
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500s Selecting previously unselected package ncbi-blast+.
500s Preparing to unpack .../187-ncbi-blast+_2.16.0+ds-6build1_ppc64el.deb ...
500s Unpacking ncbi-blast+ (2.16.0+ds-6build1) ...
500s Selecting previously unselected package phylip.
500s Preparing to unpack .../188-phylip_1%3a3.697+dfsg-4build1_ppc64el.deb ...
500s Unpacking phylip (1:3.697+dfsg-4build1) ...
500s Selecting previously unselected package prank.
500s Preparing to unpack .../189-prank_0.0.170427+dfsg-3_ppc64el.deb ...
500s Unpacking prank (0.0.170427+dfsg-3) ...
500s Selecting previously unselected package preview-latex-style.
500s Preparing to unpack .../190-preview-latex-style_13.2-1_all.deb ...
500s Unpacking preview-latex-style (13.2-1) ...
500s Selecting previously unselected package probcons.
500s Preparing to unpack .../191-probcons_1.12-14_ppc64el.deb ...
500s Unpacking probcons (1.12-14) ...
500s Selecting previously unselected package python-biopython-doc.
500s Preparing to unpack .../192-python-biopython-doc_1.85+dfsg-2build1_all.deb ...
500s Unpacking python-biopython-doc (1.85+dfsg-2build1) ...
501s Selecting previously unselected package python-matplotlib-data.
501s Preparing to unpack .../193-python-matplotlib-data_3.8.3-7build1_all.deb ...
501s Unpacking python-matplotlib-data (3.8.3-7build1) ...
501s Selecting previously unselected package python3-all.
501s Preparing to unpack .../194-python3-all_3.13.3-1_ppc64el.deb ...
501s Unpacking python3-all (3.13.3-1) ...
501s Selecting previously unselected package python3.13-dev.
501s Preparing to unpack .../195-python3.13-dev_3.13.3-1_ppc64el.deb ...
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501s Selecting previously unselected package python3-dev.
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501s Unpacking python3-dev (3.13.3-1) ...
501s Selecting previously unselected package python3-all-dev.
501s Preparing to unpack .../197-python3-all-dev_3.13.3-1_ppc64el.deb ...
501s Unpacking python3-all-dev (3.13.3-1) ...
501s Selecting previously unselected package python3.13-tk.
501s Preparing to unpack .../198-python3.13-tk_3.13.3-1_ppc64el.deb ...
501s Unpacking python3.13-tk (3.13.3-1) ...
501s Selecting previously unselected package python3-tk:ppc64el.
501s Preparing to unpack .../199-python3-tk_3.13.3-1_ppc64el.deb ...
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501s Selecting previously unselected package python3-pil.imagetk:ppc64el.
501s Preparing to unpack .../200-python3-pil.imagetk_11.1.0-5build1_ppc64el.deb ...
501s Unpacking python3-pil.imagetk:ppc64el (11.1.0-5build1) ...
501s Selecting previously unselected package python3-pil:ppc64el.
501s Preparing to unpack .../201-python3-pil_11.1.0-5build1_ppc64el.deb ...
501s Unpacking python3-pil:ppc64el (11.1.0-5build1) ...
501s Selecting previously unselected package python3-cairo.
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501s Selecting previously unselected package python3-freetype.
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501s Selecting previously unselected package python3-rlpycairo.
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501s Selecting previously unselected package python3-reportlab.
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501s Selecting previously unselected package w3c-sgml-lib.
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501s Selecting previously unselected package python3-biopython.
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502s Selecting previously unselected package python3-biopython-sql.
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502s Selecting previously unselected package python3-brotli.
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502s Selecting previously unselected package python3-contourpy.
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502s Selecting previously unselected package python3-cycler.
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502s Selecting previously unselected package python3-decorator.
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502s Selecting previously unselected package python3-defusedxml.
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502s Selecting previously unselected package python3-roman.
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502s Selecting previously unselected package python3-platformdirs.
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502s Selecting previously unselected package python3-fs.
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502s Selecting previously unselected package python3-lxml:ppc64el.
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502s Selecting previously unselected package python3-lz4.
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502s Selecting previously unselected package python3-scipy.
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503s Selecting previously unselected package python3-mpmath.
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503s Selecting previously unselected package python3-ufolib2.
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503s Selecting previously unselected package python3-imagesize.
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503s Selecting previously unselected package python3-kiwisolver.
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503s Selecting previously unselected package python3-matplotlib.
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504s Selecting previously unselected package python3-msgpack.
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504s Selecting previously unselected package python3-mysqldb.
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505s Selecting previously unselected package python3-snowballstemmer.
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522s Setting up libpaper-utils (2.2.5-0.3) ...
522s Setting up clustalo (1.2.4-8build1) ...
522s Setting up dssp (4.4.10-1) ...
522s Setting up xfonts-utils (1:7.7+7) ...
522s Setting up intltool-debian (0.35.0+20060710.6) ...
522s Setting up libmbedx509-7:ppc64el (3.6.2-3ubuntu1) ...
522s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
522s Setting up libptexenc1:ppc64el (2024.20240313.70630+ds-6) ...
522s Setting up libglpk40:ppc64el (5.0-1build2) ...
522s Setting up libraqm0:ppc64el (0.10.2-1) ...
522s Setting up libpython3.13-dev:ppc64el (3.13.3-1) ...
522s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
522s Setting up python3-numpy (1:2.2.3+ds-5) ...
526s Setting up libjs-sphinxdoc (8.2.3-1) ...
526s Setting up libraw23t64:ppc64el (0.21.4-2) ...
526s Setting up cpp-14 (14.2.0-19ubuntu2) ...
526s Setting up libmbedtls21:ppc64el (3.6.2-3ubuntu1) ...
526s Setting up dh-strip-nondeterminism (1.14.1-2) ...
526s Setting up python3-lxml:ppc64el (5.3.2-1) ...
526s Setting up python-biopython-doc (1.85+dfsg-2build1) ...
526s Setting up libtiff6:ppc64el (4.7.0-3ubuntu1) ...
526s Setting up xml-core (0.19) ...
526s Setting up python3-contourpy (1.3.1-1build1) ...
526s Setting up libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ...
526s Setting up libgcc-14-dev:ppc64el (14.2.0-19ubuntu2) ...
526s Setting up libigraph3t64:ppc64el (0.10.15+ds-3) ...
526s Setting up libstdc++-14-dev:ppc64el (14.2.0-19ubuntu2) ...
526s Setting up libsm6:ppc64el (2:1.2.6-1) ...
526s Setting up libavahi-client3:ppc64el (0.8-16ubuntu2) ...
526s Setting up cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
526s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
526s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ...
526s Setting up libxft2:ppc64el (2.3.6-1build1) ...
526s Setting up python3-scipy (1.14.1-4ubuntu2) ...
529s Setting up libpython3-dev:ppc64el (3.13.3-1) ...
529s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ...
529s Setting up python3.13-dev (3.13.3-1) ...
529s Setting up po-debconf (1.0.21+nmu1) ...
529s Setting up libtk8.6:ppc64el (8.6.16-1) ...
529s Setting up python3-mmtf (1.1.3-1) ...
530s Setting up fonts-urw-base35 (20200910-8) ...
530s Setting up libcairo2:ppc64el (1.18.4-1) ...
530s Setting up python3.13-tk (3.13.3-1) ...
530s Setting up gcc-14 (14.2.0-19ubuntu2) ...
530s Setting up ncbi-blast+ (2.16.0+ds-6build1) ...
530s Setting up python3-pil:ppc64el (11.1.0-5build1) ...
531s Setting up gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
531s Setting up libpython3-all-dev:ppc64el (3.13.3-1) ...
531s Setting up sphinx-common (8.2.3-1) ...
531s Setting up python3-dev (3.13.3-1) ...
531s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
531s Setting up netpbm (2:11.10.02-1) ...
531s Setting up python3-igraph (0.11.8+ds-1build1) ...
531s Setting up cpp (4:14.2.0-1ubuntu1) ...
531s Setting up g++-14 (14.2.0-19ubuntu2) ...
531s Setting up libcups2t64:ppc64el (2.4.12-0ubuntu1) ...
531s Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
531s Setting up python3-all-dev (3.13.3-1) ...
531s Setting up libgs10-common (10.05.0dfsg1-0ubuntu1) ...
531s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ...
531s Setting up libxmu6:ppc64el (2:1.1.3-3build2) ...
531s Setting up python3-cairo (1.27.0-2) ...
531s Setting up libtool (2.5.4-4) ...
531s Setting up blt (2.5.3+dfsg-8) ...
531s Setting up python3-tk:ppc64el (3.13.3-1) ...
531s Setting up libxaw7:ppc64el (2:1.0.16-1) ...
531s Setting up gcc (4:14.2.0-1ubuntu1) ...
531s Setting up dh-autoreconf (20) ...
531s Setting up python3-pil.imagetk:ppc64el (11.1.0-5build1) ...
531s Setting up python3-rlpycairo (0.3.0-3) ...
531s Setting up python3-reportlab (4.3.1-1) ...
532s Setting up g++ (4:14.2.0-1ubuntu1) ...
532s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
532s Setting up texlive-binaries (2024.20240313.70630+ds-6) ...
532s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
532s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
532s Setting up build-essential (12.12ubuntu1) ...
532s Setting up texlive-base (2024.20250309-1) ...
533s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
534s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
534s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
534s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
535s Setting up libgs10:ppc64el (10.05.0dfsg1-0ubuntu1) ...
535s Setting up debhelper (13.24.1ubuntu2) ...
535s Setting up ghostscript (10.05.0dfsg1-0ubuntu1) ...
535s Setting up texlive-latex-base (2024.20250309-1) ...
535s Setting up texlive-latex-recommended (2024.20250309-1) ...
535s Setting up texlive-pictures (2024.20250309-1) ...
535s Setting up texlive-fonts-recommended (2024.20250309-1) ...
535s Setting up texlive-latex-extra (2024.20250309-2) ...
535s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ...
535s Setting up libheif-plugin-aomdec:ppc64el (1.19.8-1) ...
535s Setting up libheif-plugin-libde265:ppc64el (1.19.8-1) ...
535s Setting up libheif1:ppc64el (1.19.8-1) ...
535s Setting up python3-fonttools (4.55.3-2build1) ...
536s Setting up libgd3:ppc64el (2.3.3-13ubuntu1) ...
536s Setting up libmagickcore-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ...
536s Setting up emboss-lib (6.6.0+dfsg-15ubuntu2) ...
536s Setting up python3-matplotlib (3.8.3-7build1) ...
537s Setting up libmagickwand-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ...
537s Setting up emboss (6.6.0+dfsg-15ubuntu2) ...
537s Setting up imagemagick-7.q16 (8:7.1.1.43+dfsg1-1) ...
537s update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode
537s update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode
537s update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode
537s update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode
537s update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode
537s update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode
537s update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode
537s update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode
537s update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode
537s update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode
537s update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode
537s update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode
537s update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode
537s update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode
537s update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode
537s update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode
537s update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode
537s update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode
537s update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode
537s update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode
537s update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode
537s update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode
537s update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode
537s update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist
537s update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode
537s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist
537s update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode
537s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist
537s update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode
537s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist
537s Setting up hevea (2.36-2) ...
537s Setting up imagemagick (8:7.1.1.43+dfsg1-1) ...
537s Processing triggers for install-info (7.1.1-1) ...
538s Processing triggers for libc-bin (2.41-6ubuntu1) ...
538s Processing triggers for man-db (2.13.1-1) ...
546s Processing triggers for shared-mime-info (2.4-5build1) ...
547s Processing triggers for sgml-base (1.31+nmu1) ...
547s Setting up w3c-sgml-lib (1.3-3) ...
578s Setting up docutils-common (0.21.2+dfsg-2) ...
578s Setting up python3-biopython (1.85+dfsg-2build1) ...
579s Setting up python3-biopython-sql (1.85+dfsg-2build1) ...
579s Processing triggers for sgml-base (1.31+nmu1) ...
579s Setting up python3-docutils (0.21.2+dfsg-2) ...
580s Setting up python3-sphinx (8.2.3-1) ...
580s Setting up python3-sphinxcontrib.jquery (4.1-5) ...
580s Setting up python3-numpydoc (1.8.0-1) ...
581s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ...
581s Processing triggers for tex-common (6.19) ...
581s Running updmap-sys. This may take some time... done.
582s Running mktexlsr /var/lib/texmf ... done.
582s Building format(s) --all.
666s This may take some time... done.
675s autopkgtest [02:24:48]: test full_suite: sh debian/tests/run-unit-test
675s autopkgtest [02:24:48]: test full_suite: [-----------------------
681s mkdir: created directory 'Bio'
681s mkdir: created directory 'Bio/Align'
681s mkdir: created directory 'Bio/Align/substitution_matrices'
681s mkdir: created directory 'Bio/Align/substitution_matrices/data/'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22' -> 'Bio/Align/substitution_matrices/data/BENNER22'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6' -> 'Bio/Align/substitution_matrices/data/BENNER6'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74' -> 'Bio/Align/substitution_matrices/data/BENNER74'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTN' -> 'Bio/Align/substitution_matrices/data/BLASTN'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTP' -> 'Bio/Align/substitution_matrices/data/BLASTP'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45' -> 'Bio/Align/substitution_matrices/data/BLOSUM45'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50' -> 'Bio/Align/substitution_matrices/data/BLOSUM50'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' -> 'Bio/Align/substitution_matrices/data/BLOSUM62'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80' -> 'Bio/Align/substitution_matrices/data/BLOSUM80'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90' -> 'Bio/Align/substitution_matrices/data/BLOSUM90'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF' -> 'Bio/Align/substitution_matrices/data/DAYHOFF'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG' -> 'Bio/Align/substitution_matrices/data/FENG'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC' -> 'Bio/Align/substitution_matrices/data/GENETIC'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992' -> 'Bio/Align/substitution_matrices/data/GONNET1992'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70' -> 'Bio/Align/substitution_matrices/data/HOXD70'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON' -> 'Bio/Align/substitution_matrices/data/JOHNSON'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES' -> 'Bio/Align/substitution_matrices/data/JONES'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN' -> 'Bio/Align/substitution_matrices/data/LEVIN'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN' -> 'Bio/Align/substitution_matrices/data/MCLACHLAN'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78' -> 'Bio/Align/substitution_matrices/data/MDM78'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MEGABLAST' -> 'Bio/Align/substitution_matrices/data/MEGABLAST'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4' -> 'Bio/Align/substitution_matrices/data/NUC.4.4'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250' -> 'Bio/Align/substitution_matrices/data/PAM250'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30' -> 'Bio/Align/substitution_matrices/data/PAM30'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70' -> 'Bio/Align/substitution_matrices/data/PAM70'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO' -> 'Bio/Align/substitution_matrices/data/RAO'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER' -> 'Bio/Align/substitution_matrices/data/RISLER'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER' -> 'Bio/Align/substitution_matrices/data/SCHNEIDER'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR' -> 'Bio/Align/substitution_matrices/data/STR'
681s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS' -> 'Bio/Align/substitution_matrices/data/TRANS'
682s test_Ace ... ok
682s test_Affy ... ok
685s test_AlignIO ... ok
685s test_AlignIO_ClustalIO ... ok
685s test_AlignIO_EmbossIO ... ok
685s test_AlignIO_FastaIO ... ok
685s test_AlignIO_MauveIO ... ok
685s test_AlignIO_PhylipIO ... ok
686s test_AlignIO_convert ... ok
686s test_AlignInfo ... ok
686s test_Align_Alignment ... ok
686s test_Align_a2m ... ok
686s test_Align_bed ... ok
686s test_Align_bigbed ... ok
687s test_Align_bigmaf ... ok
687s test_Align_bigpsl ... ok
688s test_Align_chain ... ok
688s test_Align_clustal ... ok
707s test_Align_codonalign ... ok
708s test_Align_emboss ... ok
708s test_Align_exonerate ... ok
708s test_Align_fasta ... ok
708s test_Align_hhr ... ok
709s test_Align_maf ... ok
709s test_Align_mauve ... ok
709s test_Align_msf ... ok
709s test_Align_nexus ... ok
709s test_Align_phylip ... ok
710s test_Align_psl ... ok
710s test_Align_sam ... ok
712s test_Align_stockholm ... ok
713s test_Align_tabular ... ok
713s test_Application ... ok
713s test_BioSQL_MySQLdb_online ... skipping. internet not available
713s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample)
713s test_BioSQL_mysql_connector_online ... skipping. internet not available
713s test_BioSQL_psycopg2_online ... skipping. internet not available
718s test_BioSQL_sqlite3 ... ok
718s test_BioSQL_sqlite3_online ... skipping. internet not available
718s test_Blast_Record ... ok
719s test_Blast_parser ... ok
719s test_CAPS ... ok
719s test_Chi2 ... ok
721s test_ClustalOmega_tool ... ok
721s test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython.
721s test_Cluster ... ok
721s test_CodonTable ... ok
721s test_ColorSpiral ... ok
721s test_Compass ... ok
722s test_Consensus ... ok
724s test_Dialign_tool ... ok
724s test_EMBL_unittest ... ok
729s test_Emboss ... ok
729s test_EmbossPrimer ... ok
734s test_Entrez ... ok
734s test_Entrez_online ... skipping. internet not available
734s test_Entrez_parser ... ok
735s test_Enzyme ... ok
735s test_ExPASy ... skipping. internet not available
735s test_Fasttree_tool ... ok
735s test_File ... ok
735s test_GenBank ... /usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py:600: BiopythonWarning: Annotation 'Sequence Read Archive: SRX001885, SRX001121, SRX001531, SRX001530, SRX001529' too long
735s warnings.warn(f"Annotation {text!r} too long", BiopythonWarning)
735s ok
737s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica'
740s ok
740s test_GraphicsChromosome ... ok
740s test_GraphicsDistribution ... ok
741s test_GraphicsGeneral ... ok
742s test_HMMCasino ... ok
742s test_HMMGeneral ... ok
742s test_KEGG ... ok
742s test_KEGG_online ... skipping. internet not available
747s test_KGML_graphics ... ok
747s test_KGML_graphics_online ... skipping. internet not available
748s test_KGML_nographics ... ok
748s test_KeyWList ... ok
748s test_LogisticRegression ... ok
750s test_MafIO_index ... ok
752s test_Mafft_tool ... ok
752s test_MarkovModel ... ok
752s test_Medline ... ok
752s test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper.
753s test_NCBIXML ... Exception ignored in: <generator object parse at 0x63030415f4c0>
753s Traceback (most recent call last):
753s File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse
753s expat_parser.Parse(NULL, True)
753s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0
753s ok
756s test_NCBI_BLAST_tools ... ok
756s test_NCBI_qblast ... ok
756s test_NMR ... ok
756s test_NaiveBayes ... ok
756s test_Nexus ... ok
756s test_PAML_baseml ... ok
757s test_PAML_codeml ... ok
757s test_PAML_yn00 ... ok
762s test_PDB_CEAligner ... ok
764s test_PDB_DSSP ... ok
764s test_PDB_Dice ... ok
764s test_PDB_Disordered ... ok
764s test_PDB_Exposure ... ok
764s test_PDB_FragmentMapper ... ok
767s test_PDB_KDTree ... ok
767s test_PDB_MMCIF2Dict ... ok
767s test_PDB_MMCIFIO ... ok
768s test_PDB_MMCIFParser ... ok
768s test_PDB_NACCESS ... ok
769s test_PDB_PDBIO ... ok
769s test_PDB_PDBList ... skipping. internet not available
776s test_PDB_PDBMLParser ... ok
776s test_PDB_PDBParser ... ok
776s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path
776s test_PDB_Polypeptide ... ok
776s test_PDB_QCPSuperimposer ... ok
780s test_PDB_SASA ... ok
780s test_PDB_SMCRA ... ok
780s test_PDB_Selection ... ok
781s test_PDB_StructureAlignment ... ok
781s test_PDB_Superimposer ... ok
781s test_PDB_alphafold_db ... skipping. internet not available
784s test_PDB_binary_cif ... /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 7.
784s warnings.warn(
784s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 144.
784s warnings.warn(
784s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 153.
784s warnings.warn(
784s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 0.
784s warnings.warn(
784s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 0.
784s warnings.warn(
784s ok
794s test_PDB_internal_coords ... ok
794s test_PDB_parse_pdb_header ... ok
794s test_PDB_vectors ... ok
794s test_PQR ... ok
794s test_Pathway ... ok
794s test_Phd ... ok
795s test_Phylo ... ok
795s test_PhyloXML ... ok
796s test_Phylo_CDAO ... ok
796s test_Phylo_NeXML ... ok
798s test_Phylo_igraph ... ok
800s test_Phylo_matplotlib ... ok
801s test_Phylo_networkx ... ok
801s test_PopGen_GenePop_nodepend ... ok
803s test_Prank_tool ... ok
804s test_Probcons_tool ... ok
804s test_ProtParam ... ok
805s test_RCSBFormats ... ok
805s test_Restriction ... ok
805s test_SCOP_Astral ... ok
806s test_SCOP_Cla ... ok
806s test_SCOP_Des ... ok
806s test_SCOP_Dom ... ok
806s test_SCOP_Hie ... ok
807s test_SCOP_Raf ... ok
807s test_SCOP_Residues ... ok
807s test_SCOP_Scop ... ok
808s test_SVDSuperimposer ... ok
808s test_SearchIO_blast_tab ... ok
808s test_SearchIO_blast_tab_index ... ok
809s test_SearchIO_blast_xml ... ok
810s test_SearchIO_blast_xml_index ... ok
811s test_SearchIO_blat_psl ... ok
811s test_SearchIO_blat_psl_index ... ok
811s test_SearchIO_exonerate ... ok
812s test_SearchIO_exonerate_text_index ... ok
812s test_SearchIO_exonerate_vulgar_index ... ok
812s test_SearchIO_fasta_m10 ... ok
813s test_SearchIO_fasta_m10_index ... ok
813s test_SearchIO_hhsuite2_text ... ok
813s test_SearchIO_hmmer2_text ... ok
814s test_SearchIO_hmmer2_text_index ... ok
814s test_SearchIO_hmmer3_domtab ... ok
814s test_SearchIO_hmmer3_domtab_index ... ok
815s test_SearchIO_hmmer3_tab ... ok
815s test_SearchIO_hmmer3_tab_index ... ok
815s test_SearchIO_hmmer3_text ... ok
816s test_SearchIO_hmmer3_text_index ... ok
816s test_SearchIO_interproscan_xml ... ok
816s test_SearchIO_model ... ok
817s test_SearchIO_write ... ok
817s test_SeqFeature ... ok
835s test_SeqIO ... ok
836s test_SeqIO_AbiIO ... ok
836s test_SeqIO_FastaIO ... ok
836s test_SeqIO_Gck ... ok
836s test_SeqIO_Gfa ... ok
837s test_SeqIO_Insdc ... ok
837s test_SeqIO_NibIO ... ok
839s test_SeqIO_PdbIO ... ok
840s test_SeqIO_QualityIO ... ok
840s test_SeqIO_SeqXML ... ok
841s test_SeqIO_SffIO ... ok
841s test_SeqIO_SnapGene ... ok
842s test_SeqIO_TwoBitIO ... ok
843s test_SeqIO_UniprotIO ... ok
843s test_SeqIO_Xdna ... ok
844s test_SeqIO_features ... ok
863s test_SeqIO_index ... ok
863s test_SeqIO_online ... skipping. internet not available
864s test_SeqIO_write ... ok
864s test_SeqRecord ... ok
864s test_SeqUtils ... ok
866s test_Seq_objs ... ok
867s test_SwissProt ... ok
868s test_TCoffee_tool ... ok
868s test_TogoWS ... skipping. internet not available
869s test_TreeConstruction ... ok
869s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file
870s test_UniGene ... ok
870s test_UniProt ... skipping. internet not available
870s test_UniProt_GOA ... ok
871s test_align ... ok
871s test_align_substitution_matrices ... ok
874s test_bgzf ... ok
874s test_cellosaurus ... ok
882s test_codonalign ... ok
882s test_geo ... ok
882s test_kNN ... ok
883s test_motifs ... ok
883s test_motifs_online ... skipping. internet not available
884s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
884s warnings.warn(
884s ok
884s test_pairwise2_no_C ... ok
884s test_pairwise_aligner ... ok
885s test_pairwise_alignment_map ... ok
893s test_phenotype ... ok
893s test_phenotype_fit ... ok
894s test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper.
894s test_prodoc ... ok
894s test_prosite ... ok
894s test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper.
895s test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython
895s test_seq ... ok
895s test_translate ... ok
896s Skipping any tests requiring internet access
896s Python version: 3.13.3 (main, Apr 8 2025, 19:55:40) [GCC 14.2.0]
896s Operating system: posix linux
896s ----------------------------------------------------------------------
896s Ran 218 tests in 213.778 seconds
896s
896s <sys>:0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'>
896s <sys>:0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'>
897s autopkgtest [02:28:30]: test full_suite: -----------------------]
897s autopkgtest [02:28:30]: test full_suite: - - - - - - - - - - results - - - - - - - - - -
897s full_suite PASS
898s autopkgtest [02:28:31]: @@@@@@@@@@@@@@@@@@@@ summary
898s dependencies PASS
898s full_suite PASS
901s nova [W] Using flock in prodstack7-ppc64el
901s Creating nova instance adt-questing-ppc64el-python-biopython-20250505-021333-juju-7f2275-prod-proposed-migration-environment-2-f14aaecc-5947-4d5f-80c4-3e9dfbfd0a64 from image adt/ubuntu-questing-ppc64el-server-20250505.img (UUID 1f333b8a-0e22-4209-a8a8-539666d3d5e7)...
901s nova [W] Timed out waiting for 7fb06e5d-f2d9-43d8-9440-49df875aef3b to get deleted.
901s nova [W] Using flock in prodstack7-ppc64el
901s Creating nova instance adt-questing-ppc64el-python-biopython-20250505-021333-juju-7f2275-prod-proposed-migration-environment-2-f14aaecc-5947-4d5f-80c4-3e9dfbfd0a64 from image adt/ubuntu-questing-ppc64el-server-20250505.img (UUID 1f333b8a-0e22-4209-a8a8-539666d3d5e7)...
901s nova [W] Timed out waiting for e05efeb4-435c-41a2-aa3b-8c2b91eac6c3 to get deleted.