0s autopkgtest [15:58:00]: starting date and time: 2025-05-03 15:58:00+0000 0s autopkgtest [15:58:00]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [15:58:00]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ahjmuqqm/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:setuptools --apt-upgrade python-biopython --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=setuptools/78.1.0-1.2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-ppc64el-7.secgroup --name adt-questing-ppc64el-python-biopython-20250503-155800-juju-7f2275-prod-proposed-migration-environment-15-1b1b04a7-4bd0-4065-8128-f132acf81d95 --image adt/ubuntu-questing-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 69s autopkgtest [15:59:09]: testbed dpkg architecture: ppc64el 69s autopkgtest [15:59:09]: testbed apt version: 3.0.0 69s autopkgtest [15:59:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 70s autopkgtest [15:59:10]: testbed release detected to be: None 70s autopkgtest [15:59:10]: updating testbed package index (apt update) 70s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 70s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 70s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 70s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 71s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1538 kB] 71s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [150 kB] 71s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.5 kB] 71s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el Packages [187 kB] 71s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el Packages [1378 kB] 71s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse ppc64el Packages [30.1 kB] 71s Fetched 3427 kB in 1s (5509 kB/s) 72s Reading package lists... 72s autopkgtest [15:59:12]: upgrading testbed (apt dist-upgrade and autopurge) 72s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 73s Starting 2 pkgProblemResolver with broken count: 0 73s Done 73s Entering ResolveByKeep 74s 74s Calculating upgrade... 74s The following packages will be upgraded: 74s libperl5.40 perl perl-base perl-modules-5.40 python3-pkg-resources 74s python3-setuptools 74s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s Need to get 11.2 MB of archives. 74s After this operation, 42.0 kB of additional disk space will be used. 74s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libperl5.40 ppc64el 5.40.1-3 [4949 kB] 74s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl ppc64el 5.40.1-3 [262 kB] 74s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl-base ppc64el 5.40.1-3 [1923 kB] 74s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl-modules-5.40 all 5.40.1-3 [3217 kB] 74s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el python3-pkg-resources all 78.1.0-1.2 [144 kB] 74s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el python3-setuptools all 78.1.0-1.2 [660 kB] 74s Fetched 11.2 MB in 0s (34.8 MB/s) 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78697 files and directories currently installed.) 75s Preparing to unpack .../libperl5.40_5.40.1-3_ppc64el.deb ... 75s Unpacking libperl5.40:ppc64el (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 75s Preparing to unpack .../perl_5.40.1-3_ppc64el.deb ... 75s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 75s Preparing to unpack .../perl-base_5.40.1-3_ppc64el.deb ... 75s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 75s Setting up perl-base (5.40.1-3) ... 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78697 files and directories currently installed.) 75s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 75s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 76s Preparing to unpack .../python3-pkg-resources_78.1.0-1.2_all.deb ... 76s Unpacking python3-pkg-resources (78.1.0-1.2) over (75.8.0-1) ... 76s Preparing to unpack .../python3-setuptools_78.1.0-1.2_all.deb ... 76s Unpacking python3-setuptools (78.1.0-1.2) over (75.8.0-1) ... 76s Setting up python3-pkg-resources (78.1.0-1.2) ... 76s Setting up python3-setuptools (78.1.0-1.2) ... 77s Setting up perl-modules-5.40 (5.40.1-3) ... 77s Setting up libperl5.40:ppc64el (5.40.1-3) ... 77s Setting up perl (5.40.1-3) ... 77s Processing triggers for man-db (2.13.0-1) ... 78s Processing triggers for libc-bin (2.41-6ubuntu1) ... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s Starting pkgProblemResolver with broken count: 0 79s Starting 2 pkgProblemResolver with broken count: 0 79s Done 79s Solving dependencies... 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s autopkgtest [15:59:21]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP Sun Apr 6 14:52:42 UTC 2025 81s autopkgtest [15:59:21]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biopython 84s Get:1 http://ftpmaster.internal/ubuntu questing/universe python-biopython 1.85+dfsg-2build1 (dsc) [3406 B] 84s Get:2 http://ftpmaster.internal/ubuntu questing/universe python-biopython 1.85+dfsg-2build1 (tar) [14.6 MB] 84s Get:3 http://ftpmaster.internal/ubuntu questing/universe python-biopython 1.85+dfsg-2build1 (diff) [42.8 kB] 84s gpgv: Signature made Tue Mar 4 15:18:59 2025 UTC 84s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 84s gpgv: Can't check signature: No public key 84s dpkg-source: warning: cannot verify inline signature for ./python-biopython_1.85+dfsg-2build1.dsc: no acceptable signature found 85s autopkgtest [15:59:25]: testing package python-biopython version 1.85+dfsg-2build1 86s autopkgtest [15:59:26]: build not needed 91s autopkgtest [15:59:31]: test dependencies: preparing testbed 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Starting pkgProblemResolver with broken count: 0 91s Starting 2 pkgProblemResolver with broken count: 0 91s Done 92s The following NEW packages will be installed: 92s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 92s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 92s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 92s libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblcms2-2 92s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 92s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 92s python-biopython-doc python3-all python3-biopython python3-biopython-sql 92s python3-cairo python3-freetype python3-numpy python3-numpy-dev python3-pil 92s python3-reportlab python3-rlpycairo sgml-base w3c-sgml-lib x11-common 92s xfonts-encodings xfonts-utils xml-core 92s 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 48.5 MB of archives. 92s After this operation, 136 MB of additional disk space will be used. 92s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy-dev ppc64el 1:2.2.3+ds-5 [154 kB] 92s Get:2 http://ftpmaster.internal/ubuntu questing/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB] 92s Get:3 http://ftpmaster.internal/ubuntu questing/main ppc64el libgfortran5 ppc64el 15-20250404-0ubuntu1 [615 kB] 92s Get:4 http://ftpmaster.internal/ubuntu questing/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB] 92s Get:5 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy ppc64el 1:2.2.3+ds-5 [4835 kB] 92s Get:6 http://ftpmaster.internal/ubuntu questing/main ppc64el sgml-base all 1.31 [11.4 kB] 92s Get:7 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 92s Get:8 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 92s Get:9 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 92s Get:10 http://ftpmaster.internal/ubuntu questing/main ppc64el x11-common all 1:7.7+23ubuntu4 [21.8 kB] 92s Get:11 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 92s Get:12 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 92s Get:13 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 92s Get:14 http://ftpmaster.internal/ubuntu questing/main ppc64el fontconfig-config ppc64el 2.15.0-2.2ubuntu1 [37.9 kB] 92s Get:15 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontconfig1 ppc64el 2.15.0-2.2ubuntu1 [187 kB] 92s Get:16 http://ftpmaster.internal/ubuntu questing/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 92s Get:17 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 92s Get:18 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 92s Get:19 http://ftpmaster.internal/ubuntu questing/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 92s Get:20 http://ftpmaster.internal/ubuntu questing/main ppc64el libcairo2 ppc64el 1.18.4-1 [746 kB] 92s Get:21 http://ftpmaster.internal/ubuntu questing/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 92s Get:22 http://ftpmaster.internal/ubuntu questing/main ppc64el libgomp1 ppc64el 15-20250404-0ubuntu1 [168 kB] 92s Get:23 http://ftpmaster.internal/ubuntu questing/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 92s Get:24 http://ftpmaster.internal/ubuntu questing/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 92s Get:25 http://ftpmaster.internal/ubuntu questing/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 92s Get:26 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 92s Get:27 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 92s Get:28 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 92s Get:29 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 92s Get:30 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 93s Get:31 http://ftpmaster.internal/ubuntu questing/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 93s Get:32 http://ftpmaster.internal/ubuntu questing/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 93s Get:33 http://ftpmaster.internal/ubuntu questing/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB] 93s Get:34 http://ftpmaster.internal/ubuntu questing/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 93s Get:35 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 93s Get:36 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 93s Get:37 http://ftpmaster.internal/ubuntu questing/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu1 [283 kB] 93s Get:38 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 93s Get:39 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 93s Get:40 http://ftpmaster.internal/ubuntu questing/universe ppc64el python-biopython-doc all 1.85+dfsg-2build1 [18.2 MB] 93s Get:41 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-all ppc64el 3.13.3-1 [880 B] 93s Get:42 http://ftpmaster.internal/ubuntu questing/main ppc64el libopenjp2-7 ppc64el 2.5.3-2 [248 kB] 93s Get:43 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-pil ppc64el 11.1.0-5build1 [601 kB] 93s Get:44 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-cairo ppc64el 1.27.0-2 [129 kB] 93s Get:45 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 93s Get:46 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 93s Get:47 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-reportlab all 4.3.1-1 [1137 kB] 93s Get:48 http://ftpmaster.internal/ubuntu questing/main ppc64el xml-core all 0.19 [20.3 kB] 93s Get:49 http://ftpmaster.internal/ubuntu questing/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 93s Get:50 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython ppc64el 1.85+dfsg-2build1 [1766 kB] 93s Get:51 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython-sql all 1.85+dfsg-2build1 [26.4 kB] 93s Fetched 48.5 MB in 1s (36.4 MB/s) 93s Selecting previously unselected package python3-numpy-dev:ppc64el. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78711 files and directories currently installed.) 93s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_ppc64el.deb ... 93s Unpacking python3-numpy-dev:ppc64el (1:2.2.3+ds-5) ... 93s Selecting previously unselected package libblas3:ppc64el. 93s Preparing to unpack .../01-libblas3_3.12.1-2_ppc64el.deb ... 93s Unpacking libblas3:ppc64el (3.12.1-2) ... 93s Selecting previously unselected package libgfortran5:ppc64el. 93s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_ppc64el.deb ... 93s Unpacking libgfortran5:ppc64el (15-20250404-0ubuntu1) ... 93s Selecting previously unselected package liblapack3:ppc64el. 93s Preparing to unpack .../03-liblapack3_3.12.1-2_ppc64el.deb ... 93s Unpacking liblapack3:ppc64el (3.12.1-2) ... 93s Selecting previously unselected package python3-numpy. 93s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_ppc64el.deb ... 93s Unpacking python3-numpy (1:2.2.3+ds-5) ... 94s Selecting previously unselected package sgml-base. 94s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 94s Unpacking sgml-base (1.31) ... 94s Selecting previously unselected package fonts-dejavu-mono. 94s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 94s Unpacking fonts-dejavu-mono (2.37-8) ... 94s Selecting previously unselected package fonts-dejavu-core. 94s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 94s Unpacking fonts-dejavu-core (2.37-8) ... 94s Selecting previously unselected package libfontenc1:ppc64el. 94s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 94s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 94s Selecting previously unselected package x11-common. 94s Preparing to unpack .../09-x11-common_1%3a7.7+23ubuntu4_all.deb ... 94s Unpacking x11-common (1:7.7+23ubuntu4) ... 94s Selecting previously unselected package xfonts-encodings. 94s Preparing to unpack .../10-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 94s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 94s Selecting previously unselected package xfonts-utils. 94s Preparing to unpack .../11-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 94s Unpacking xfonts-utils (1:7.7+7) ... 94s Selecting previously unselected package fonts-urw-base35. 94s Preparing to unpack .../12-fonts-urw-base35_20200910-8_all.deb ... 94s Unpacking fonts-urw-base35 (20200910-8) ... 94s Selecting previously unselected package fontconfig-config. 94s Preparing to unpack .../13-fontconfig-config_2.15.0-2.2ubuntu1_ppc64el.deb ... 94s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 94s Selecting previously unselected package libfontconfig1:ppc64el. 94s Preparing to unpack .../14-libfontconfig1_2.15.0-2.2ubuntu1_ppc64el.deb ... 94s Unpacking libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ... 94s Selecting previously unselected package libpixman-1-0:ppc64el. 94s Preparing to unpack .../15-libpixman-1-0_0.44.0-3_ppc64el.deb ... 94s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 94s Selecting previously unselected package libxcb-render0:ppc64el. 94s Preparing to unpack .../16-libxcb-render0_1.17.0-2_ppc64el.deb ... 94s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 94s Selecting previously unselected package libxcb-shm0:ppc64el. 94s Preparing to unpack .../17-libxcb-shm0_1.17.0-2_ppc64el.deb ... 94s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 94s Selecting previously unselected package libxrender1:ppc64el. 94s Preparing to unpack .../18-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 94s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 94s Selecting previously unselected package libcairo2:ppc64el. 94s Preparing to unpack .../19-libcairo2_1.18.4-1_ppc64el.deb ... 94s Unpacking libcairo2:ppc64el (1.18.4-1) ... 94s Selecting previously unselected package libdeflate0:ppc64el. 94s Preparing to unpack .../20-libdeflate0_1.23-2_ppc64el.deb ... 94s Unpacking libdeflate0:ppc64el (1.23-2) ... 94s Selecting previously unselected package libgomp1:ppc64el. 94s Preparing to unpack .../21-libgomp1_15-20250404-0ubuntu1_ppc64el.deb ... 94s Unpacking libgomp1:ppc64el (15-20250404-0ubuntu1) ... 94s Selecting previously unselected package libgraphite2-3:ppc64el. 94s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 94s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 94s Selecting previously unselected package libharfbuzz0b:ppc64el. 94s Preparing to unpack .../23-libharfbuzz0b_10.2.0-1_ppc64el.deb ... 94s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ... 94s Selecting previously unselected package libimagequant0:ppc64el. 94s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_ppc64el.deb ... 94s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 94s Selecting previously unselected package libjpeg-turbo8:ppc64el. 94s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 94s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 94s Selecting previously unselected package libjpeg8:ppc64el. 94s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 94s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 94s Selecting previously unselected package libjs-jquery. 94s Preparing to unpack .../27-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 94s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 94s Selecting previously unselected package libjs-underscore. 94s Preparing to unpack .../28-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 94s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 95s Selecting previously unselected package libjs-sphinxdoc. 95s Preparing to unpack .../29-libjs-sphinxdoc_8.1.3-5_all.deb ... 95s Unpacking libjs-sphinxdoc (8.1.3-5) ... 95s Selecting previously unselected package liblcms2-2:ppc64el. 95s Preparing to unpack .../30-liblcms2-2_2.16-2_ppc64el.deb ... 95s Unpacking liblcms2-2:ppc64el (2.16-2) ... 95s Selecting previously unselected package liblerc4:ppc64el. 95s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 95s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 95s Selecting previously unselected package libraqm0:ppc64el. 95s Preparing to unpack .../32-libraqm0_0.10.2-1_ppc64el.deb ... 95s Unpacking libraqm0:ppc64el (0.10.2-1) ... 95s Selecting previously unselected package libsharpyuv0:ppc64el. 95s Preparing to unpack .../33-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 95s Unpacking libsharpyuv0:ppc64el 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95s Preparing to unpack .../39-python-biopython-doc_1.85+dfsg-2build1_all.deb ... 95s Unpacking python-biopython-doc (1.85+dfsg-2build1) ... 95s Selecting previously unselected package python3-all. 95s Preparing to unpack .../40-python3-all_3.13.3-1_ppc64el.deb ... 95s Unpacking python3-all (3.13.3-1) ... 95s Selecting previously unselected package libopenjp2-7:ppc64el. 95s Preparing to unpack .../41-libopenjp2-7_2.5.3-2_ppc64el.deb ... 95s Unpacking libopenjp2-7:ppc64el (2.5.3-2) ... 95s Selecting previously unselected package python3-pil:ppc64el. 95s Preparing to unpack .../42-python3-pil_11.1.0-5build1_ppc64el.deb ... 95s Unpacking python3-pil:ppc64el (11.1.0-5build1) ... 95s Selecting previously unselected package python3-cairo. 95s Preparing to unpack .../43-python3-cairo_1.27.0-2_ppc64el.deb ... 95s Unpacking python3-cairo (1.27.0-2) ... 95s Selecting previously unselected package python3-freetype. 95s Preparing to unpack .../44-python3-freetype_2.5.1-1_all.deb ... 95s Unpacking python3-freetype (2.5.1-1) ... 95s Selecting previously unselected package python3-rlpycairo. 95s Preparing to unpack .../45-python3-rlpycairo_0.3.0-3_all.deb ... 95s Unpacking python3-rlpycairo (0.3.0-3) ... 95s Selecting previously unselected package python3-reportlab. 95s Preparing to unpack .../46-python3-reportlab_4.3.1-1_all.deb ... 95s Unpacking python3-reportlab (4.3.1-1) ... 95s Selecting previously unselected package xml-core. 95s Preparing to unpack .../47-xml-core_0.19_all.deb ... 95s Unpacking xml-core (0.19) ... 95s Selecting previously unselected package w3c-sgml-lib. 95s Preparing to unpack .../48-w3c-sgml-lib_1.3-3_all.deb ... 95s Unpacking w3c-sgml-lib (1.3-3) ... 95s Selecting previously unselected package python3-biopython. 95s Preparing to unpack .../49-python3-biopython_1.85+dfsg-2build1_ppc64el.deb ... 95s Unpacking python3-biopython (1.85+dfsg-2build1) ... 95s Selecting previously unselected package python3-biopython-sql. 95s Preparing to unpack .../50-python3-biopython-sql_1.85+dfsg-2build1_all.deb ... 95s Unpacking python3-biopython-sql (1.85+dfsg-2build1) ... 96s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 96s Setting up liblcms2-2:ppc64el (2.16-2) ... 96s Setting up libpixman-1-0:ppc64el (0.44.0-3) ... 96s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 96s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 96s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 96s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 96s Setting up x11-common (1:7.7+23ubuntu4) ... 96s Setting up libdeflate0:ppc64el (1.23-2) ... 96s Setting up python3-all (3.13.3-1) ... 96s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 96s Setting up libgomp1:ppc64el (15-20250404-0ubuntu1) ... 96s Setting up python3-freetype (2.5.1-1) ... 96s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 96s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 96s Setting up libblas3:ppc64el (3.12.1-2) ... 96s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 96s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 96s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 96s Setting up fonts-dejavu-mono (2.37-8) ... 96s Setting up python3-numpy-dev:ppc64el (1:2.2.3+ds-5) ... 96s Setting up fonts-dejavu-core (2.37-8) ... 96s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 96s Setting up libgfortran5:ppc64el (15-20250404-0ubuntu1) ... 96s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 96s Setting up libopenjp2-7:ppc64el (2.5.3-2) ... 96s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ... 96s Setting up sgml-base (1.31) ... 96s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 96s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 96s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 96s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 96s Setting up liblapack3:ppc64el (3.12.1-2) ... 96s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 96s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 96s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 96s Setting up xfonts-utils (1:7.7+7) ... 96s Setting up libraqm0:ppc64el (0.10.2-1) ... 96s Setting up python3-numpy (1:2.2.3+ds-5) ... 98s Setting up libjs-sphinxdoc (8.1.3-5) ... 98s Setting up python-biopython-doc (1.85+dfsg-2build1) ... 98s Setting up libtiff6:ppc64el (4.7.0-3ubuntu1) ... 98s Setting up xml-core (0.19) ... 98s Setting up libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ... 98s Setting up fonts-urw-base35 (20200910-8) ... 99s Setting up libcairo2:ppc64el (1.18.4-1) ... 99s Setting up python3-pil:ppc64el (11.1.0-5build1) ... 99s Setting up python3-cairo (1.27.0-2) ... 99s Setting up python3-rlpycairo (0.3.0-3) ... 99s Setting up python3-reportlab (4.3.1-1) ... 100s Processing triggers for libc-bin (2.41-6ubuntu1) ... 100s Processing triggers for man-db (2.13.0-1) ... 101s Processing triggers for sgml-base (1.31) ... 101s Setting up w3c-sgml-lib (1.3-3) ... 131s Setting up python3-biopython (1.85+dfsg-2build1) ... 132s Setting up python3-biopython-sql (1.85+dfsg-2build1) ... 133s autopkgtest [16:00:13]: test dependencies: sh debian/tests/run-unit-test 133s autopkgtest [16:00:13]: test dependencies: [----------------------- 133s cp: cannot stat '/usr/share/libcifpp/mmcif_pdbx.dic': No such file or directory 133s cp: cannot stat '/usr/share/libcifpp/mmcif_ma.dic': No such file or directory 135s mkdir: created directory 'Bio' 135s mkdir: created directory 'Bio/Align' 135s mkdir: created directory 'Bio/Align/substitution_matrices' 135s mkdir: created directory 'Bio/Align/substitution_matrices/data/' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22' -> 'Bio/Align/substitution_matrices/data/BENNER22' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6' -> 'Bio/Align/substitution_matrices/data/BENNER6' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74' -> 'Bio/Align/substitution_matrices/data/BENNER74' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTN' -> 'Bio/Align/substitution_matrices/data/BLASTN' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTP' -> 'Bio/Align/substitution_matrices/data/BLASTP' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45' -> 'Bio/Align/substitution_matrices/data/BLOSUM45' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50' -> 'Bio/Align/substitution_matrices/data/BLOSUM50' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' -> 'Bio/Align/substitution_matrices/data/BLOSUM62' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80' -> 'Bio/Align/substitution_matrices/data/BLOSUM80' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90' -> 'Bio/Align/substitution_matrices/data/BLOSUM90' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF' -> 'Bio/Align/substitution_matrices/data/DAYHOFF' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG' -> 'Bio/Align/substitution_matrices/data/FENG' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC' -> 'Bio/Align/substitution_matrices/data/GENETIC' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992' -> 'Bio/Align/substitution_matrices/data/GONNET1992' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70' -> 'Bio/Align/substitution_matrices/data/HOXD70' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON' -> 'Bio/Align/substitution_matrices/data/JOHNSON' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES' -> 'Bio/Align/substitution_matrices/data/JONES' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN' -> 'Bio/Align/substitution_matrices/data/LEVIN' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN' -> 'Bio/Align/substitution_matrices/data/MCLACHLAN' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78' -> 'Bio/Align/substitution_matrices/data/MDM78' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MEGABLAST' -> 'Bio/Align/substitution_matrices/data/MEGABLAST' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4' -> 'Bio/Align/substitution_matrices/data/NUC.4.4' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250' -> 'Bio/Align/substitution_matrices/data/PAM250' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30' -> 'Bio/Align/substitution_matrices/data/PAM30' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70' -> 'Bio/Align/substitution_matrices/data/PAM70' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO' -> 'Bio/Align/substitution_matrices/data/RAO' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER' -> 'Bio/Align/substitution_matrices/data/RISLER' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER' -> 'Bio/Align/substitution_matrices/data/SCHNEIDER' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR' -> 'Bio/Align/substitution_matrices/data/STR' 135s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS' -> 'Bio/Align/substitution_matrices/data/TRANS' 135s test_Ace ... ok 135s test_Affy ... ok 139s test_AlignIO ... ok 139s test_AlignIO_ClustalIO ... ok 139s test_AlignIO_EmbossIO ... ok 139s test_AlignIO_FastaIO ... ok 139s test_AlignIO_MauveIO ... ok 139s test_AlignIO_PhylipIO ... ok 139s test_AlignIO_convert ... ok 139s test_AlignInfo ... ok 139s test_Align_Alignment ... ok 139s test_Align_a2m ... ok 139s test_Align_bed ... ok 140s test_Align_bigbed ... ok 140s test_Align_bigmaf ... ok 141s test_Align_bigpsl ... ok 141s test_Align_chain ... ok 141s test_Align_clustal ... ok 145s test_Align_codonalign ... ok 145s test_Align_emboss ... ok 145s test_Align_exonerate ... ok 145s test_Align_fasta ... ok 145s test_Align_hhr ... ok 146s test_Align_maf ... ok 146s test_Align_mauve ... ok 146s test_Align_msf ... ok 147s test_Align_nexus ... ok 147s test_Align_phylip ... ok 147s test_Align_psl ... ok 147s test_Align_sam ... ok 150s test_Align_stockholm ... ok 150s test_Align_tabular ... ok 150s test_Application ... ok 150s test_BioSQL_MySQLdb_online ... skipping. internet not available 150s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) 150s test_BioSQL_mysql_connector_online ... skipping. internet not available 150s test_BioSQL_psycopg2_online ... skipping. internet not available 155s test_BioSQL_sqlite3 ... ok 156s test_BioSQL_sqlite3_online ... skipping. internet not available 156s test_Blast_Record ... ok 156s test_Blast_parser ... ok 156s test_CAPS ... ok 156s test_Chi2 ... ok 156s test_ClustalOmega_tool ... skipping. Install clustalo if you want to use Clustal Omega from Biopython. 156s test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython. 156s test_Cluster ... ok 157s test_CodonTable ... ok 157s test_ColorSpiral ... ok 157s test_Compass ... ok 158s test_Consensus ... ok 158s test_Dialign_tool ... skipping. Install DIALIGN2-2 if you want to use the Bio.Align.Applications wrapper. 158s test_EMBL_unittest ... ok 158s test_Emboss ... skipping. $EMBOSS_ROOT='/usr/lib/emboss' which does not exist! 158s test_EmbossPrimer ... ok 162s test_Entrez ... ok 162s test_Entrez_online ... skipping. internet not available 163s test_Entrez_parser ... ok 163s test_Enzyme ... ok 163s test_ExPASy ... skipping. internet not available 163s test_Fasttree_tool ... skipping. Install FastTree and correctly set the file path to the program if you want to use it from Biopython. 163s test_File ... ok 163s test_GenBank ... /usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py:600: BiopythonWarning: Annotation 'Sequence Read Archive: SRX001885, SRX001121, SRX001531, SRX001530, SRX001529' too long 163s warnings.warn(f"Annotation {text!r} too long", BiopythonWarning) 163s ok 166s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' 168s ok 169s test_GraphicsChromosome ... ok 169s test_GraphicsDistribution ... ok 170s test_GraphicsGeneral ... ok 170s test_HMMCasino ... ok 170s test_HMMGeneral ... ok 170s test_KEGG ... ok 170s test_KEGG_online ... skipping. internet not available 176s test_KGML_graphics ... ok 176s test_KGML_graphics_online ... skipping. internet not available 176s test_KGML_nographics ... ok 176s test_KeyWList ... ok 176s test_LogisticRegression ... ok 178s test_MafIO_index ... ok 178s test_Mafft_tool ... skipping. Install MAFFT if you want to use the Bio.Align.Applications wrapper. 178s test_MarkovModel ... ok 178s test_Medline ... ok 178s test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. 179s test_NCBIXML ... Exception ignored in: 179s Traceback (most recent call last): 179s File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse 179s expat_parser.Parse(NULL, True) 179s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0 179s ok 179s test_NCBI_BLAST_tools ... skipping. Install the NCBI BLAST+ command line tools if you want to use the Bio.Blast.Applications wrapper. 179s test_NCBI_qblast ... ok 179s test_NMR ... ok 179s test_NaiveBayes ... ok 179s test_Nexus ... ok 179s test_PAML_baseml ... ok 180s test_PAML_codeml ... ok 180s test_PAML_yn00 ... ok 184s test_PDB_CEAligner ... ok 185s test_PDB_DSSP ... ok 185s test_PDB_Dice ... ok 185s test_PDB_Disordered ... ok 185s test_PDB_Exposure ... ok 185s test_PDB_FragmentMapper ... ok 188s test_PDB_KDTree ... ok 188s test_PDB_MMCIF2Dict ... ok 188s test_PDB_MMCIFIO ... ok 189s test_PDB_MMCIFParser ... ok 189s test_PDB_NACCESS ... ok 190s test_PDB_PDBIO ... ok 190s test_PDB_PDBList ... skipping. internet not available 197s test_PDB_PDBMLParser ... ok 197s test_PDB_PDBParser ... ok 197s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path 197s test_PDB_Polypeptide ... ok 197s test_PDB_QCPSuperimposer ... ok 201s test_PDB_SASA ... ok 202s test_PDB_SMCRA ... ok 202s test_PDB_Selection ... ok 202s test_PDB_StructureAlignment ... ok 202s test_PDB_Superimposer ... ok 202s test_PDB_alphafold_db ... skipping. internet not available 202s test_PDB_binary_cif ... skipping. Error: Install msgpack to use Bio.PDB.binaryCIF (e.g. pip install msgpack) 202s 202s test_PDB_internal_coords ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) 202s 202s test_PDB_parse_pdb_header ... ok 202s test_PDB_vectors ... ok 202s test_PQR ... ok 202s test_Pathway ... ok 202s test_Phd ... ok 203s test_Phylo ... ok 203s test_PhyloXML ... ok 203s test_Phylo_CDAO ... skipping. Install RDFlib if you want to use the CDAO tree format. 203s test_Phylo_NeXML ... ok 203s test_Phylo_igraph ... skipping. Install igraph if you wish to use it with Bio.Phylo 203s test_Phylo_matplotlib ... skipping. Install matplotlib if you want to use Bio.Phylo._utils. 203s test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo 203s test_PopGen_GenePop_nodepend ... ok 203s test_Prank_tool ... skipping. Install PRANK if you want to use the Bio.Align.Applications wrapper. 203s test_Probcons_tool ... skipping. Install PROBCONS if you want to use the Bio.Align.Applications wrapper. 203s test_ProtParam ... ok 204s test_RCSBFormats ... ok 204s test_Restriction ... ok 204s test_SCOP_Astral ... ok 204s test_SCOP_Cla ... ok 204s test_SCOP_Des ... ok 204s test_SCOP_Dom ... ok 204s test_SCOP_Hie ... ok 204s test_SCOP_Raf ... ok 204s test_SCOP_Residues ... ok 204s test_SCOP_Scop ... ok 204s test_SVDSuperimposer ... ok 204s test_SearchIO_blast_tab ... ok 204s test_SearchIO_blast_tab_index ... ok 205s test_SearchIO_blast_xml ... ok 206s test_SearchIO_blast_xml_index ... ok 206s test_SearchIO_blat_psl ... ok 206s test_SearchIO_blat_psl_index ... ok 206s test_SearchIO_exonerate ... ok 206s test_SearchIO_exonerate_text_index ... ok 206s test_SearchIO_exonerate_vulgar_index ... ok 206s test_SearchIO_fasta_m10 ... ok 206s test_SearchIO_fasta_m10_index ... ok 207s test_SearchIO_hhsuite2_text ... ok 207s test_SearchIO_hmmer2_text ... ok 207s test_SearchIO_hmmer2_text_index ... ok 207s test_SearchIO_hmmer3_domtab ... ok 207s test_SearchIO_hmmer3_domtab_index ... ok 207s test_SearchIO_hmmer3_tab ... ok 207s test_SearchIO_hmmer3_tab_index ... ok 207s test_SearchIO_hmmer3_text ... ok 207s test_SearchIO_hmmer3_text_index ... ok 207s test_SearchIO_interproscan_xml ... ok 207s test_SearchIO_model ... ok 208s test_SearchIO_write ... ok 208s test_SeqFeature ... ok 225s test_SeqIO ... ok 226s test_SeqIO_AbiIO ... ok 226s test_SeqIO_FastaIO ... ok 226s test_SeqIO_Gck ... ok 226s test_SeqIO_Gfa ... ok 226s test_SeqIO_Insdc ... ok 226s test_SeqIO_NibIO ... ok 228s test_SeqIO_PdbIO ... ok 228s test_SeqIO_QualityIO ... ok 228s test_SeqIO_SeqXML ... ok 228s test_SeqIO_SffIO ... ok 228s test_SeqIO_SnapGene ... ok 230s test_SeqIO_TwoBitIO ... ok 230s test_SeqIO_UniprotIO ... ok 230s test_SeqIO_Xdna ... ok 230s test_SeqIO_features ... ok 248s test_SeqIO_index ... ok 248s test_SeqIO_online ... skipping. internet not available 248s test_SeqIO_write ... ok 248s test_SeqRecord ... ok 248s test_SeqUtils ... ok 250s test_Seq_objs ... ok 250s test_SwissProt ... ok 250s test_TCoffee_tool ... skipping. Install TCOFFEE if you want to use the Bio.Align.Applications wrapper. 250s test_TogoWS ... skipping. internet not available 251s test_TreeConstruction ... ok 251s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file 251s test_UniGene ... ok 251s test_UniProt ... skipping. internet not available 251s test_UniProt_GOA ... ok 251s test_align ... ok 251s test_align_substitution_matrices ... ok 254s test_bgzf ... ok 254s test_cellosaurus ... ok 260s test_codonalign ... ok 260s test_geo ... ok 260s test_kNN ... ok 260s test_motifs ... ok 260s test_motifs_online ... skipping. internet not available 260s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 260s warnings.warn( 260s ok 261s test_pairwise2_no_C ... ok 261s test_pairwise_aligner ... ok 261s test_pairwise_alignment_map ... ok 269s test_phenotype ... ok 269s test_phenotype_fit ... skipping. Install SciPy if you want to use Bio.phenotype fit functionality. 269s test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. 269s test_prodoc ... ok 269s test_prosite ... ok 269s test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper. 269s test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython 269s test_seq ... ok 269s test_translate ... ok 269s ---------------------------------------------------------------------- 269s Ran 218 tests in 133.959 seconds 269s 269s Skipping any tests requiring internet access 269s Python version: 3.13.3 (main, Apr 8 2025, 19:55:40) [GCC 14.2.0] 269s Operating system: posix linux 269s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'> 269s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'> 270s autopkgtest [16:02:30]: test dependencies: -----------------------] 270s autopkgtest [16:02:30]: test dependencies: - - - - - - - - - - results - - - - - - - - - - 270s dependencies PASS 270s autopkgtest [16:02:30]: test full_suite: preparing testbed 363s autopkgtest [16:04:03]: testbed dpkg architecture: ppc64el 363s autopkgtest [16:04:03]: testbed apt version: 3.0.0 364s autopkgtest [16:04:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 364s autopkgtest [16:04:04]: testbed release detected to be: questing 364s autopkgtest [16:04:04]: updating testbed package index (apt update) 365s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 365s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 365s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 365s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 365s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [150 kB] 365s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1538 kB] 365s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.5 kB] 365s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el Packages [187 kB] 365s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe ppc64el Packages [1378 kB] 365s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse ppc64el Packages [30.1 kB] 366s Fetched 3427 kB in 1s (5153 kB/s) 366s Reading package lists... 367s autopkgtest [16:04:07]: upgrading testbed (apt dist-upgrade and autopurge) 367s Reading package lists... 367s Building dependency tree... 367s Reading state information... 367s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 368s Starting 2 pkgProblemResolver with broken count: 0 368s Done 368s Entering ResolveByKeep 368s 368s Calculating upgrade... 368s The following packages will be upgraded: 368s libperl5.40 perl perl-base perl-modules-5.40 python3-pkg-resources 368s python3-setuptools 368s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 368s Need to get 11.2 MB of archives. 368s After this operation, 42.0 kB of additional disk space will be used. 368s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el libperl5.40 ppc64el 5.40.1-3 [4949 kB] 369s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl ppc64el 5.40.1-3 [262 kB] 369s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl-base ppc64el 5.40.1-3 [1923 kB] 369s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el perl-modules-5.40 all 5.40.1-3 [3217 kB] 369s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el python3-pkg-resources all 78.1.0-1.2 [144 kB] 369s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main ppc64el python3-setuptools all 78.1.0-1.2 [660 kB] 369s Fetched 11.2 MB in 1s (19.6 MB/s) 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78697 files and directories currently installed.) 370s Preparing to unpack .../libperl5.40_5.40.1-3_ppc64el.deb ... 370s Unpacking libperl5.40:ppc64el (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 371s Preparing to unpack .../perl_5.40.1-3_ppc64el.deb ... 371s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 371s Preparing to unpack .../perl-base_5.40.1-3_ppc64el.deb ... 371s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 372s Setting up perl-base (5.40.1-3) ... 372s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78697 files and directories currently installed.) 372s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 372s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 373s Preparing to unpack .../python3-pkg-resources_78.1.0-1.2_all.deb ... 373s Unpacking python3-pkg-resources (78.1.0-1.2) over (75.8.0-1) ... 373s Preparing to unpack .../python3-setuptools_78.1.0-1.2_all.deb ... 373s Unpacking python3-setuptools (78.1.0-1.2) over (75.8.0-1) ... 373s Setting up python3-pkg-resources (78.1.0-1.2) ... 373s Setting up python3-setuptools (78.1.0-1.2) ... 374s Setting up perl-modules-5.40 (5.40.1-3) ... 374s Setting up libperl5.40:ppc64el (5.40.1-3) ... 374s Setting up perl (5.40.1-3) ... 374s Processing triggers for man-db (2.13.0-1) ... 376s Processing triggers for libc-bin (2.41-6ubuntu1) ... 376s Reading package lists... 376s Building dependency tree... 376s Reading state information... 377s Starting pkgProblemResolver with broken count: 0 377s Starting 2 pkgProblemResolver with broken count: 0 377s Done 377s Solving dependencies... 377s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 379s Reading package lists... 379s Building dependency tree... 379s Reading state information... 380s Starting pkgProblemResolver with broken count: 0 380s Starting 2 pkgProblemResolver with broken count: 0 380s Done 380s The following NEW packages will be installed: 380s autoconf automake autopoint autotools-dev blt build-essential bwa clustalo 380s cpp cpp-14 cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper 380s debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign 380s docutils-common dssp dwz emboss emboss-data emboss-lib fasttree flex 380s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 380s fonts-lato fonts-lmodern fonts-lyx fonts-urw-base35 g++ g++-14 380s g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 380s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext ghostscript 380s hevea hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16 380s intltool-debian libamd3 libaom3 libapache-pom-java libarchive-zip-perl 380s libargtable2-0 libarpack2t64 libasan8 libavahi-client3 libavahi-common-data 380s libavahi-common3 libblas3 libcairo2 libcc1-0 libcifpp-data libcifpp7 380s libcolamd3 libcommons-logging-java libcommons-parent-java libcups2t64 380s libde265-0 libdebhelper-perl libdeflate0 libexpat1-dev libfftw3-double3 380s libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 380s libgcc-14-dev libgd3 libgfortran5 libglpk40 libgomp1 libgraphite2-3 380s libgs-common libgs10 libgs10-common libharfbuzz0b libheif-plugin-aomdec 380s libheif-plugin-libde265 libheif1 libhpdf-2.3.0 libice6 libidn12 380s libigraph3t64 libijs-0.35 libimagequant0 libisl23 libitm1 libjbig0 380s libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 380s libjs-sphinxdoc libjs-underscore libjson-perl libkpathsea6 liblapack3 380s liblbfgsb0 liblcms2-2 liblerc4 liblqr-1-0 liblsan0 libltdl7 380s libmagickcore-7.q16-10 libmagickwand-7.q16-10 libmbedcrypto16 libmbedtls21 380s libmbedx509-7 libmpc3 libmpfi0 libmysqlclient24 libnetpbm11t64 libopenjp2-7 380s libpaper-utils libpaper2 libpdfbox-java libpixman-1-0 libplfit0 libpotrace0 380s libpq5 libptexenc1 libpython3-all-dev libpython3-dev libpython3.13-dev 380s libqhull-r8.0 libquadmath0 libraqm0 libraw23t64 libsharpyuv0 libsm6 380s libstdc++-14-dev libsuitesparseconfig7 libsynctex2 libtcl8.6 libteckit0 380s libtexlua53-5 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 380s libwebpdemux2 libwebpmux3 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 380s libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64 libzzip-0-13t64 m4 380s mafft mysql-common ncbi-blast+ ncbi-data netpbm phylip po-debconf 380s poppler-data prank preview-latex-style probcons python-biopython-doc 380s python-matplotlib-data python3-alabaster python3-all python3-all-dev 380s python3-biopython python3-biopython-sql python3-brotli python3-cairo 380s python3-contourpy python3-cycler python3-decorator python3-defusedxml 380s python3-dev python3-docutils python3-fonttools python3-freetype python3-fs 380s python3-igraph python3-imagesize python3-kiwisolver python3-lxml python3-lz4 380s python3-matplotlib python3-mmtf python3-mpmath python3-msgpack 380s python3-mysqldb python3-networkx python3-numpy python3-numpy-dev 380s python3-numpydoc python3-pil python3-pil.imagetk python3-platformdirs 380s python3-rdflib python3-reportlab python3-rlpycairo python3-roman 380s python3-scipy python3-snowballstemmer python3-sphinx 380s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 380s python3-tabulate python3-texttable python3-tk python3-ufolib2 python3.13-dev 380s python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common t-coffee 380s t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended 380s texlive-latex-base texlive-latex-extra texlive-latex-recommended 380s texlive-pictures tk8.6-blt2.5 unicode-data w3c-sgml-lib wise wise-data 380s x11-common xdg-utils xfonts-encodings xfonts-utils xml-core zlib1g-dev 380s 0 upgraded, 256 newly installed, 0 to remove and 0 not upgraded. 380s Need to get 423 MB of archives. 380s After this operation, 1901 MB of additional disk space will be used. 380s Get:1 http://ftpmaster.internal/ubuntu questing/main ppc64el m4 ppc64el 1.4.19-7 [279 kB] 380s Get:2 http://ftpmaster.internal/ubuntu questing/main ppc64el flex ppc64el 2.6.4-8.2build1 [303 kB] 380s Get:3 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-lato all 2.015-1 [2781 kB] 380s Get:4 http://ftpmaster.internal/ubuntu questing/main ppc64el libgomp1 ppc64el 15-20250404-0ubuntu1 [168 kB] 380s Get:5 http://ftpmaster.internal/ubuntu questing/main ppc64el libfftw3-double3 ppc64el 3.3.10-2fakesync1build1 [443 kB] 380s Get:6 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 380s Get:7 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 380s Get:8 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 380s Get:9 http://ftpmaster.internal/ubuntu questing/main ppc64el x11-common all 1:7.7+23ubuntu4 [21.8 kB] 380s Get:10 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 380s Get:11 http://ftpmaster.internal/ubuntu questing/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 380s Get:12 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 381s Get:13 http://ftpmaster.internal/ubuntu questing/main ppc64el fontconfig-config ppc64el 2.15.0-2.2ubuntu1 [37.9 kB] 381s Get:14 http://ftpmaster.internal/ubuntu questing/main ppc64el libfontconfig1 ppc64el 2.15.0-2.2ubuntu1 [187 kB] 381s Get:15 http://ftpmaster.internal/ubuntu questing/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 381s Get:16 http://ftpmaster.internal/ubuntu questing/main ppc64el libaom3 ppc64el 3.12.1-1 [2942 kB] 381s Get:17 http://ftpmaster.internal/ubuntu questing/main ppc64el libheif-plugin-aomdec ppc64el 1.19.7-1 [11.6 kB] 381s Get:18 http://ftpmaster.internal/ubuntu questing/main ppc64el libde265-0 ppc64el 1.0.15-1build5 [288 kB] 381s Get:19 http://ftpmaster.internal/ubuntu questing/main ppc64el libheif-plugin-libde265 ppc64el 1.19.7-1 [9178 B] 381s Get:20 http://ftpmaster.internal/ubuntu questing/main ppc64el libheif1 ppc64el 1.19.7-1 [462 kB] 381s Get:21 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 381s Get:22 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 381s Get:23 http://ftpmaster.internal/ubuntu questing/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 381s Get:24 http://ftpmaster.internal/ubuntu questing/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 381s Get:25 http://ftpmaster.internal/ubuntu questing/universe ppc64el liblqr-1-0 ppc64el 0.4.2-2.1build2 [43.4 kB] 381s Get:26 http://ftpmaster.internal/ubuntu questing/main ppc64el libltdl7 ppc64el 2.5.4-4 [50.3 kB] 381s Get:27 http://ftpmaster.internal/ubuntu questing/main ppc64el libopenjp2-7 ppc64el 2.5.3-2 [248 kB] 381s Get:28 http://ftpmaster.internal/ubuntu questing/main ppc64el libraw23t64 ppc64el 0.21.4-2 [510 kB] 381s Get:29 http://ftpmaster.internal/ubuntu questing/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 381s Get:30 http://ftpmaster.internal/ubuntu questing/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 381s Get:31 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 381s Get:32 http://ftpmaster.internal/ubuntu questing/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu1 [283 kB] 381s Get:33 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 381s Get:34 http://ftpmaster.internal/ubuntu questing/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 381s Get:35 http://ftpmaster.internal/ubuntu questing/universe ppc64el imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [69.7 kB] 381s Get:36 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmagickcore-7.q16-10 ppc64el 8:7.1.1.43+dfsg1-1 [2474 kB] 381s Get:37 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmagickwand-7.q16-10 ppc64el 8:7.1.1.43+dfsg1-1 [316 kB] 381s Get:38 http://ftpmaster.internal/ubuntu questing/main ppc64el poppler-data all 0.4.12-1 [2060 kB] 381s Get:39 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy-dev ppc64el 1:2.2.3+ds-5 [154 kB] 381s Get:40 http://ftpmaster.internal/ubuntu questing/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB] 381s Get:41 http://ftpmaster.internal/ubuntu questing/main ppc64el libgfortran5 ppc64el 15-20250404-0ubuntu1 [615 kB] 381s Get:42 http://ftpmaster.internal/ubuntu questing/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB] 381s Get:43 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-numpy ppc64el 1:2.2.3+ds-5 [4835 kB] 381s Get:44 http://ftpmaster.internal/ubuntu questing/main ppc64el sgml-base all 1.31 [11.4 kB] 381s Get:45 http://ftpmaster.internal/ubuntu questing/main ppc64el autoconf all 2.72-3ubuntu1 [383 kB] 381s Get:46 http://ftpmaster.internal/ubuntu questing/main ppc64el autotools-dev all 20220109.1 [44.9 kB] 381s Get:47 http://ftpmaster.internal/ubuntu questing/main ppc64el automake all 1:1.17-3ubuntu1 [572 kB] 381s Get:48 http://ftpmaster.internal/ubuntu questing/main ppc64el autopoint all 0.23.1-1 [619 kB] 381s Get:49 http://ftpmaster.internal/ubuntu questing/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB] 381s Get:50 http://ftpmaster.internal/ubuntu questing/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 381s Get:51 http://ftpmaster.internal/ubuntu questing/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 381s Get:52 http://ftpmaster.internal/ubuntu questing/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 381s Get:53 http://ftpmaster.internal/ubuntu questing/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB] 382s Get:54 http://ftpmaster.internal/ubuntu questing/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-8 [778 kB] 382s Get:55 http://ftpmaster.internal/ubuntu questing/main ppc64el blt ppc64el 2.5.3+dfsg-8 [4830 B] 382s Get:56 http://ftpmaster.internal/ubuntu questing/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 382s Get:57 http://ftpmaster.internal/ubuntu questing/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB] 382s Get:58 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu2 [10.5 MB] 382s Get:59 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-14 ppc64el 14.2.0-19ubuntu2 [1036 B] 382s Get:60 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B] 382s Get:61 http://ftpmaster.internal/ubuntu questing/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB] 382s Get:62 http://ftpmaster.internal/ubuntu questing/main ppc64el libcc1-0 ppc64el 15-20250404-0ubuntu1 [48.6 kB] 382s Get:63 http://ftpmaster.internal/ubuntu questing/main ppc64el libitm1 ppc64el 15-20250404-0ubuntu1 [32.3 kB] 382s Get:64 http://ftpmaster.internal/ubuntu questing/main ppc64el libasan8 ppc64el 15-20250404-0ubuntu1 [3007 kB] 382s Get:65 http://ftpmaster.internal/ubuntu questing/main ppc64el liblsan0 ppc64el 15-20250404-0ubuntu1 [1374 kB] 382s Get:66 http://ftpmaster.internal/ubuntu questing/main ppc64el libtsan2 ppc64el 15-20250404-0ubuntu1 [2732 kB] 382s Get:67 http://ftpmaster.internal/ubuntu questing/main ppc64el libubsan1 ppc64el 15-20250404-0ubuntu1 [1232 kB] 382s Get:68 http://ftpmaster.internal/ubuntu questing/main ppc64el libquadmath0 ppc64el 15-20250404-0ubuntu1 [160 kB] 382s Get:69 http://ftpmaster.internal/ubuntu questing/main ppc64el libgcc-14-dev ppc64el 14.2.0-19ubuntu2 [1618 kB] 382s Get:70 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu2 [20.6 MB] 382s Get:71 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-14 ppc64el 14.2.0-19ubuntu2 [540 kB] 382s Get:72 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B] 382s Get:73 http://ftpmaster.internal/ubuntu questing/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B] 382s Get:74 http://ftpmaster.internal/ubuntu questing/main ppc64el libstdc++-14-dev ppc64el 14.2.0-19ubuntu2 [2679 kB] 382s Get:75 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu2 [12.0 MB] 383s Get:76 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-14 ppc64el 14.2.0-19ubuntu2 [23.0 kB] 383s Get:77 http://ftpmaster.internal/ubuntu questing/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B] 383s Get:78 http://ftpmaster.internal/ubuntu questing/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B] 383s Get:79 http://ftpmaster.internal/ubuntu questing/main ppc64el build-essential ppc64el 12.12ubuntu1 [5094 B] 383s Get:80 http://ftpmaster.internal/ubuntu questing/universe ppc64el bwa ppc64el 0.7.18-1 [231 kB] 383s Get:81 http://ftpmaster.internal/ubuntu questing/universe ppc64el libargtable2-0 ppc64el 13-3 [18.7 kB] 383s Get:82 http://ftpmaster.internal/ubuntu questing/universe ppc64el clustalo ppc64el 1.2.4-8build1 [246 kB] 383s Get:83 http://ftpmaster.internal/ubuntu questing/main ppc64el libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 383s Get:84 http://ftpmaster.internal/ubuntu questing/main ppc64el libtool all 2.5.4-4 [168 kB] 383s Get:85 http://ftpmaster.internal/ubuntu questing/main ppc64el dh-autoreconf all 20 [16.1 kB] 383s Get:86 http://ftpmaster.internal/ubuntu questing/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] 383s Get:87 http://ftpmaster.internal/ubuntu questing/main ppc64el libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 383s Get:88 http://ftpmaster.internal/ubuntu questing/main ppc64el dh-strip-nondeterminism all 1.14.1-2 [5064 B] 383s Get:89 http://ftpmaster.internal/ubuntu questing/main ppc64el debugedit ppc64el 1:5.1-2 [52.4 kB] 383s Get:90 http://ftpmaster.internal/ubuntu questing/main ppc64el dwz ppc64el 0.15-1build6 [142 kB] 383s Get:91 http://ftpmaster.internal/ubuntu questing/main ppc64el gettext ppc64el 0.23.1-1 [1155 kB] 383s Get:92 http://ftpmaster.internal/ubuntu questing/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] 383s Get:93 http://ftpmaster.internal/ubuntu questing/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] 383s Get:94 http://ftpmaster.internal/ubuntu questing/main ppc64el debhelper all 13.24.1ubuntu2 [895 kB] 383s Get:95 http://ftpmaster.internal/ubuntu questing/universe ppc64el dh-python all 6.20250308 [118 kB] 383s Get:96 http://ftpmaster.internal/ubuntu questing/universe ppc64el dialign ppc64el 2.2.1-13 [158 kB] 383s Get:97 http://ftpmaster.internal/ubuntu questing/main ppc64el xml-core all 0.19 [20.3 kB] 383s Get:98 http://ftpmaster.internal/ubuntu questing/main ppc64el docutils-common all 0.21.2+dfsg-2 [131 kB] 383s Get:99 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcifpp-data all 7.0.9-1 [481 kB] 383s Get:100 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcifpp7 ppc64el 7.0.9-1 [1127 kB] 383s Get:101 http://ftpmaster.internal/ubuntu questing/universe ppc64el dssp ppc64el 4.4.10-1 [793 kB] 383s Get:102 http://ftpmaster.internal/ubuntu questing/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 383s Get:103 http://ftpmaster.internal/ubuntu questing/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 383s Get:104 http://ftpmaster.internal/ubuntu questing/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 383s Get:105 http://ftpmaster.internal/ubuntu questing/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB] 383s Get:106 http://ftpmaster.internal/ubuntu questing/main ppc64el libxpm4 ppc64el 1:3.5.17-1build2 [49.9 kB] 383s Get:107 http://ftpmaster.internal/ubuntu questing/main ppc64el libgd3 ppc64el 2.3.3-12ubuntu3 [165 kB] 383s Get:108 http://ftpmaster.internal/ubuntu questing/universe ppc64el libhpdf-2.3.0 ppc64el 2.3.0+dfsg-1build3 [460 kB] 383s Get:109 http://ftpmaster.internal/ubuntu questing/main ppc64el mysql-common all 5.8+1.1.1ubuntu1 [6922 B] 383s Get:110 http://ftpmaster.internal/ubuntu questing/main ppc64el libmysqlclient24 ppc64el 8.4.4-0ubuntu2 [1296 kB] 383s Get:111 http://ftpmaster.internal/ubuntu questing/main ppc64el libpq5 ppc64el 17.4-1 [174 kB] 383s Get:112 http://ftpmaster.internal/ubuntu questing/universe ppc64el emboss-lib ppc64el 6.6.0+dfsg-15ubuntu2 [3471 kB] 383s Get:113 http://ftpmaster.internal/ubuntu questing/universe ppc64el emboss-data all 6.6.0+dfsg-15ubuntu2 [61.0 MB] 384s Get:114 http://ftpmaster.internal/ubuntu questing/universe ppc64el emboss ppc64el 6.6.0+dfsg-15ubuntu2 [1044 kB] 384s Get:115 http://ftpmaster.internal/ubuntu questing/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 384s Get:116 http://ftpmaster.internal/ubuntu questing/universe ppc64el fonts-lmodern all 2.005-1 [4799 kB] 384s Get:117 http://ftpmaster.internal/ubuntu questing/universe ppc64el fonts-lyx all 2.4.3-1 [171 kB] 384s Get:118 http://ftpmaster.internal/ubuntu questing/main ppc64el libgs-common all 10.05.0dfsg1-0ubuntu1 [176 kB] 384s Get:119 http://ftpmaster.internal/ubuntu questing/main ppc64el libgs10-common all 10.05.0dfsg1-0ubuntu1 [490 kB] 384s Get:120 http://ftpmaster.internal/ubuntu questing/main ppc64el libavahi-common-data ppc64el 0.8-16ubuntu2 [31.0 kB] 384s Get:121 http://ftpmaster.internal/ubuntu questing/main ppc64el libavahi-common3 ppc64el 0.8-16ubuntu2 [25.9 kB] 384s Get:122 http://ftpmaster.internal/ubuntu questing/main ppc64el libavahi-client3 ppc64el 0.8-16ubuntu2 [30.9 kB] 384s Get:123 http://ftpmaster.internal/ubuntu questing/main ppc64el libcups2t64 ppc64el 2.4.12-0ubuntu1 [348 kB] 384s Get:124 http://ftpmaster.internal/ubuntu questing/main ppc64el libidn12 ppc64el 1.43-1 [63.5 kB] 384s Get:125 http://ftpmaster.internal/ubuntu questing/main ppc64el libijs-0.35 ppc64el 0.35-15.2 [16.8 kB] 384s Get:126 http://ftpmaster.internal/ubuntu questing/main ppc64el libjbig2dec0 ppc64el 0.20-1build3 [90.9 kB] 384s Get:127 http://ftpmaster.internal/ubuntu questing/main ppc64el libpaper2 ppc64el 2.2.5-0.3 [18.0 kB] 384s Get:128 http://ftpmaster.internal/ubuntu questing/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB] 384s Get:129 http://ftpmaster.internal/ubuntu questing/main ppc64el libsm6 ppc64el 2:1.2.4-1 [18.4 kB] 384s Get:130 http://ftpmaster.internal/ubuntu questing/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB] 384s Get:131 http://ftpmaster.internal/ubuntu questing/main ppc64el libgs10 ppc64el 10.05.0dfsg1-0ubuntu1 [5025 kB] 384s Get:132 http://ftpmaster.internal/ubuntu questing/main ppc64el ghostscript ppc64el 10.05.0dfsg1-0ubuntu1 [42.9 kB] 384s Get:133 http://ftpmaster.internal/ubuntu questing/universe ppc64el libnetpbm11t64 ppc64el 2:11.09.02-2 [142 kB] 384s Get:134 http://ftpmaster.internal/ubuntu questing/universe ppc64el netpbm ppc64el 2:11.09.02-2 [2579 kB] 384s Get:135 http://ftpmaster.internal/ubuntu questing/universe ppc64el tex-common all 6.19 [29.8 kB] 384s Get:136 http://ftpmaster.internal/ubuntu questing/main ppc64el libpaper-utils ppc64el 2.2.5-0.3 [15.6 kB] 384s Get:137 http://ftpmaster.internal/ubuntu questing/universe ppc64el libkpathsea6 ppc64el 2024.20240313.70630+ds-6 [72.3 kB] 384s Get:138 http://ftpmaster.internal/ubuntu questing/universe ppc64el libptexenc1 ppc64el 2024.20240313.70630+ds-6 [44.9 kB] 384s Get:139 http://ftpmaster.internal/ubuntu questing/universe ppc64el libsynctex2 ppc64el 2024.20240313.70630+ds-6 [68.2 kB] 384s Get:140 http://ftpmaster.internal/ubuntu questing/universe ppc64el libtexlua53-5 ppc64el 2024.20240313.70630+ds-6 [163 kB] 384s Get:141 http://ftpmaster.internal/ubuntu questing/main ppc64el t1utils ppc64el 1.41-4build3 [69.7 kB] 384s Get:142 http://ftpmaster.internal/ubuntu questing/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 384s Get:143 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 384s Get:144 http://ftpmaster.internal/ubuntu questing/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 384s Get:145 http://ftpmaster.internal/ubuntu questing/main ppc64el libcairo2 ppc64el 1.18.4-1 [746 kB] 384s Get:146 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmpfi0 ppc64el 1.5.4+ds-4 [38.6 kB] 385s Get:147 http://ftpmaster.internal/ubuntu questing/universe ppc64el libpotrace0 ppc64el 1.16-2build1 [23.0 kB] 385s Get:148 http://ftpmaster.internal/ubuntu questing/universe ppc64el libteckit0 ppc64el 2.5.12+ds1-1 [399 kB] 385s Get:149 http://ftpmaster.internal/ubuntu questing/main ppc64el libxmu6 ppc64el 2:1.1.3-3build2 [56.8 kB] 385s Get:150 http://ftpmaster.internal/ubuntu questing/main ppc64el libxaw7 ppc64el 2:1.0.16-1 [230 kB] 385s Get:151 http://ftpmaster.internal/ubuntu questing/main ppc64el libxi6 ppc64el 2:1.8.2-1 [37.9 kB] 385s Get:152 http://ftpmaster.internal/ubuntu questing/universe ppc64el libzzip-0-13t64 ppc64el 0.13.78+dfsg.1-0.1 [33.4 kB] 385s Get:153 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-binaries ppc64el 2024.20240313.70630+ds-6 [12.4 MB] 385s Get:154 http://ftpmaster.internal/ubuntu questing/main ppc64el xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 385s Get:155 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-base all 2024.20250309-1 [22.7 MB] 385s Get:156 http://ftpmaster.internal/ubuntu questing/main ppc64el hicolor-icon-theme all 0.18-2 [13.3 kB] 385s Get:157 http://ftpmaster.internal/ubuntu questing/universe ppc64el imagemagick-7.q16 ppc64el 8:7.1.1.43+dfsg1-1 [704 kB] 385s Get:158 http://ftpmaster.internal/ubuntu questing/universe ppc64el imagemagick ppc64el 8:7.1.1.43+dfsg1-1 [14.1 kB] 385s Get:159 http://ftpmaster.internal/ubuntu questing/universe ppc64el hevea ppc64el 2.36-2 [2153 kB] 385s Get:160 http://ftpmaster.internal/ubuntu questing/main ppc64el libsuitesparseconfig7 ppc64el 1:7.8.3+dfsg-3 [13.3 kB] 385s Get:161 http://ftpmaster.internal/ubuntu questing/universe ppc64el libamd3 ppc64el 1:7.8.3+dfsg-3 [37.3 kB] 385s Get:162 http://ftpmaster.internal/ubuntu questing/universe ppc64el libapache-pom-java all 33-2 [5874 B] 385s Get:163 http://ftpmaster.internal/ubuntu questing/universe ppc64el libarpack2t64 ppc64el 3.9.1-4 [107 kB] 385s Get:164 http://ftpmaster.internal/ubuntu questing/main ppc64el libcolamd3 ppc64el 1:7.8.3+dfsg-3 [21.5 kB] 385s Get:165 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcommons-parent-java all 56-1 [10.7 kB] 385s Get:166 http://ftpmaster.internal/ubuntu questing/universe ppc64el libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 385s Get:167 http://ftpmaster.internal/ubuntu questing/main ppc64el libexpat1-dev ppc64el 2.7.1-1 [151 kB] 385s Get:168 http://ftpmaster.internal/ubuntu questing/universe ppc64el libglpk40 ppc64el 5.0-1build2 [467 kB] 385s Get:169 http://ftpmaster.internal/ubuntu questing/universe ppc64el libplfit0 ppc64el 0.9.6+ds-2ubuntu1 [36.4 kB] 385s Get:170 http://ftpmaster.internal/ubuntu questing/universe ppc64el libigraph3t64 ppc64el 0.10.15+ds-3 [1132 kB] 385s Get:171 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 385s Get:172 http://ftpmaster.internal/ubuntu questing/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 385s Get:173 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 385s Get:174 http://ftpmaster.internal/ubuntu questing/main ppc64el libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 385s Get:175 http://ftpmaster.internal/ubuntu questing/main ppc64el libjson-perl all 4.10000-1 [81.9 kB] 385s Get:176 http://ftpmaster.internal/ubuntu questing/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 385s Get:177 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmbedcrypto16 ppc64el 3.6.2-3ubuntu1 [293 kB] 385s Get:178 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmbedx509-7 ppc64el 3.6.2-3ubuntu1 [40.1 kB] 385s Get:179 http://ftpmaster.internal/ubuntu questing/universe ppc64el libmbedtls21 ppc64el 3.6.2-3ubuntu1 [135 kB] 385s Get:180 http://ftpmaster.internal/ubuntu questing/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB] 386s Get:181 http://ftpmaster.internal/ubuntu questing/main ppc64el libpython3.13-dev ppc64el 3.13.3-1 [5982 kB] 386s Get:182 http://ftpmaster.internal/ubuntu questing/main ppc64el libpython3-dev ppc64el 3.13.3-1 [10.8 kB] 386s Get:183 http://ftpmaster.internal/ubuntu questing/main ppc64el libpython3-all-dev ppc64el 3.13.3-1 [904 B] 386s Get:184 http://ftpmaster.internal/ubuntu questing/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 386s Get:185 http://ftpmaster.internal/ubuntu questing/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu4 [191 kB] 386s Get:186 http://ftpmaster.internal/ubuntu questing/universe ppc64el mafft ppc64el 7.505-1 [990 kB] 386s Get:187 http://ftpmaster.internal/ubuntu questing/universe ppc64el ncbi-data all 6.1.20170106+dfsg2-5 [3966 kB] 386s Get:188 http://ftpmaster.internal/ubuntu questing/universe ppc64el ncbi-blast+ ppc64el 2.16.0+ds-6build1 [16.1 MB] 386s Get:189 http://ftpmaster.internal/ubuntu questing/universe ppc64el phylip ppc64el 1:3.697+dfsg-4build1 [952 kB] 386s Get:190 http://ftpmaster.internal/ubuntu questing/universe ppc64el prank ppc64el 0.0.170427+dfsg-3 [353 kB] 386s Get:191 http://ftpmaster.internal/ubuntu questing/universe ppc64el preview-latex-style all 13.2-1 [347 kB] 386s Get:192 http://ftpmaster.internal/ubuntu questing/universe ppc64el probcons ppc64el 1.12-14 [174 kB] 386s Get:193 http://ftpmaster.internal/ubuntu questing/universe ppc64el python-biopython-doc all 1.85+dfsg-2build1 [18.2 MB] 386s Get:194 http://ftpmaster.internal/ubuntu questing/universe ppc64el python-matplotlib-data all 3.8.3-7build1 [2934 kB] 386s Get:195 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-all ppc64el 3.13.3-1 [880 B] 386s Get:196 http://ftpmaster.internal/ubuntu questing/main ppc64el python3.13-dev ppc64el 3.13.3-1 [508 kB] 386s Get:197 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-dev ppc64el 3.13.3-1 [26.7 kB] 386s Get:198 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-all-dev ppc64el 3.13.3-1 [898 B] 386s Get:199 http://ftpmaster.internal/ubuntu questing/main ppc64el python3.13-tk ppc64el 3.13.3-1 [107 kB] 386s Get:200 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-tk ppc64el 3.13.3-1 [9854 B] 386s Get:201 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-pil.imagetk ppc64el 11.1.0-5build1 [10.3 kB] 386s Get:202 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-pil ppc64el 11.1.0-5build1 [601 kB] 386s Get:203 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-cairo ppc64el 1.27.0-2 [129 kB] 386s Get:204 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 386s Get:205 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 386s Get:206 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-reportlab all 4.3.1-1 [1137 kB] 386s Get:207 http://ftpmaster.internal/ubuntu questing/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 386s Get:208 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython ppc64el 1.85+dfsg-2build1 [1766 kB] 387s Get:209 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-biopython-sql all 1.85+dfsg-2build1 [26.4 kB] 387s Get:210 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-brotli ppc64el 1.1.0-2build4 [422 kB] 387s Get:211 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-contourpy ppc64el 1.3.1-1build1 [218 kB] 387s Get:212 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 387s Get:213 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 387s Get:214 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-defusedxml all 0.7.1-3 [42.2 kB] 387s Get:215 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-roman all 5.0-1 [10.3 kB] 387s Get:216 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-docutils all 0.21.2+dfsg-2 [409 kB] 387s Get:217 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-platformdirs all 4.3.6-1 [16.8 kB] 387s Get:218 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-fs all 2.4.16-7 [90.8 kB] 387s Get:219 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-lxml ppc64el 5.3.2-1 [1393 kB] 387s Get:220 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-lz4 ppc64el 4.4.0+dfsg-1build1 [28.1 kB] 387s Get:221 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-scipy ppc64el 1.14.1-4ubuntu2 [19.4 MB] 387s Get:222 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 387s Get:223 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-sympy all 1.13.3-5 [4229 kB] 387s Get:224 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 387s Get:225 http://ftpmaster.internal/ubuntu questing/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 387s Get:226 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-fonttools ppc64el 4.55.3-2build1 [1521 kB] 387s Get:227 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-imagesize all 1.4.1-1 [6844 B] 387s Get:228 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3build1 [59.5 kB] 387s Get:229 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-matplotlib ppc64el 3.8.3-7build1 [17.4 MB] 387s Get:230 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-msgpack ppc64el 1.0.3-3build4 [89.5 kB] 387s Get:231 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-mmtf all 1.1.3-1 [16.2 kB] 387s Get:232 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-mysqldb ppc64el 1.4.6-2build6 [50.4 kB] 387s Get:233 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 388s Get:234 http://ftpmaster.internal/ubuntu questing/main ppc64el sphinx-common all 8.1.3-5 [663 kB] 388s Get:235 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-alabaster all 0.7.16-0.1 [18.5 kB] 388s Get:236 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 388s Get:237 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-sphinx all 8.1.3-5 [474 kB] 388s Get:238 http://ftpmaster.internal/ubuntu questing/main ppc64el python3-tabulate all 0.9.0-1 [45.3 kB] 388s Get:239 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-numpydoc all 1.8.0-1 [52.4 kB] 388s Get:240 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-rdflib all 7.1.1-2 [426 kB] 388s Get:241 http://ftpmaster.internal/ubuntu questing/main ppc64el sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 388s Get:242 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 388s Get:243 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB] 388s Get:244 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-texttable all 1.7.0-1 [11.2 kB] 388s Get:245 http://ftpmaster.internal/ubuntu questing/universe ppc64el t-coffee ppc64el 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1022 kB] 388s Get:246 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-fonts-recommended all 2024.20250309-1 [4974 kB] 388s Get:247 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-latex-base all 2024.20250309-1 [1276 kB] 388s Get:248 http://ftpmaster.internal/ubuntu questing/universe ppc64el libfontbox-java all 1:1.8.16-5 [208 kB] 388s Get:249 http://ftpmaster.internal/ubuntu questing/universe ppc64el libpdfbox-java all 1:1.8.16-5 [5521 kB] 388s Get:250 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-latex-recommended all 2024.20250309-1 [8727 kB] 388s Get:251 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-pictures all 2024.20250309-1 [17.0 MB] 388s Get:252 http://ftpmaster.internal/ubuntu questing/universe ppc64el texlive-latex-extra all 2024.20250309-2 [24.8 MB] 389s Get:253 http://ftpmaster.internal/ubuntu questing/universe ppc64el wise-data all 2.4.1-25 [83.0 kB] 389s Get:254 http://ftpmaster.internal/ubuntu questing/universe ppc64el wise ppc64el 2.4.1-25 [1081 kB] 389s Get:255 http://ftpmaster.internal/ubuntu questing/universe ppc64el fasttree ppc64el 2.1.11-2 [218 kB] 389s Get:256 http://ftpmaster.internal/ubuntu questing/universe ppc64el python3-igraph ppc64el 0.11.8+ds-1build1 [360 kB] 389s Preconfiguring packages ... 389s Fetched 423 MB in 9s (48.3 MB/s) 389s Selecting previously unselected package m4. 389s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78711 files and directories currently installed.) 389s Preparing to unpack .../000-m4_1.4.19-7_ppc64el.deb ... 389s Unpacking m4 (1.4.19-7) ... 389s Selecting previously unselected package flex. 389s Preparing to unpack .../001-flex_2.6.4-8.2build1_ppc64el.deb ... 389s Unpacking flex (2.6.4-8.2build1) ... 390s Selecting previously unselected package fonts-lato. 390s Preparing to unpack .../002-fonts-lato_2.015-1_all.deb ... 390s Unpacking fonts-lato (2.015-1) ... 390s Selecting previously unselected package libgomp1:ppc64el. 390s Preparing to unpack .../003-libgomp1_15-20250404-0ubuntu1_ppc64el.deb ... 390s Unpacking libgomp1:ppc64el (15-20250404-0ubuntu1) ... 390s Selecting previously unselected package libfftw3-double3:ppc64el. 390s Preparing to unpack .../004-libfftw3-double3_3.3.10-2fakesync1build1_ppc64el.deb ... 390s Unpacking libfftw3-double3:ppc64el (3.3.10-2fakesync1build1) ... 390s Selecting previously unselected package fonts-dejavu-mono. 390s Preparing to unpack .../005-fonts-dejavu-mono_2.37-8_all.deb ... 390s Unpacking fonts-dejavu-mono (2.37-8) ... 390s Selecting previously unselected package fonts-dejavu-core. 390s Preparing to unpack .../006-fonts-dejavu-core_2.37-8_all.deb ... 390s Unpacking fonts-dejavu-core (2.37-8) ... 390s Selecting previously unselected package libfontenc1:ppc64el. 390s Preparing to unpack .../007-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 390s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 390s Selecting previously unselected package x11-common. 390s Preparing to unpack .../008-x11-common_1%3a7.7+23ubuntu4_all.deb ... 390s Unpacking x11-common (1:7.7+23ubuntu4) ... 390s Selecting previously unselected package xfonts-encodings. 390s Preparing to unpack .../009-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 390s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 390s Selecting previously unselected package xfonts-utils. 390s Preparing to unpack .../010-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 390s Unpacking xfonts-utils (1:7.7+7) ... 390s Selecting previously unselected package fonts-urw-base35. 390s Preparing to unpack .../011-fonts-urw-base35_20200910-8_all.deb ... 390s Unpacking fonts-urw-base35 (20200910-8) ... 390s Selecting previously unselected package fontconfig-config. 390s Preparing to unpack .../012-fontconfig-config_2.15.0-2.2ubuntu1_ppc64el.deb ... 390s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 390s Selecting previously unselected package libfontconfig1:ppc64el. 390s Preparing to unpack .../013-libfontconfig1_2.15.0-2.2ubuntu1_ppc64el.deb ... 390s Unpacking libfontconfig1:ppc64el (2.15.0-2.2ubuntu1) ... 390s Selecting previously unselected package libsharpyuv0:ppc64el. 390s Preparing to unpack .../014-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 390s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 390s Selecting previously unselected package libaom3:ppc64el. 390s Preparing to unpack .../015-libaom3_3.12.1-1_ppc64el.deb ... 390s Unpacking libaom3:ppc64el (3.12.1-1) ... 390s Selecting previously unselected package libheif-plugin-aomdec:ppc64el. 390s Preparing to unpack .../016-libheif-plugin-aomdec_1.19.7-1_ppc64el.deb ... 390s Unpacking libheif-plugin-aomdec:ppc64el (1.19.7-1) ... 390s Selecting previously unselected package libde265-0:ppc64el. 390s Preparing to unpack .../017-libde265-0_1.0.15-1build5_ppc64el.deb ... 390s Unpacking libde265-0:ppc64el (1.0.15-1build5) ... 390s Selecting previously unselected package libheif-plugin-libde265:ppc64el. 390s Preparing to unpack .../018-libheif-plugin-libde265_1.19.7-1_ppc64el.deb ... 390s Unpacking libheif-plugin-libde265:ppc64el (1.19.7-1) ... 390s Selecting previously unselected package libheif1:ppc64el. 390s Preparing to unpack .../019-libheif1_1.19.7-1_ppc64el.deb ... 390s Unpacking libheif1:ppc64el (1.19.7-1) ... 390s Selecting previously unselected package libjbig0:ppc64el. 390s Preparing to unpack .../020-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 390s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 390s Selecting previously unselected package libjpeg-turbo8:ppc64el. 390s Preparing to unpack .../021-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 390s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 390s Selecting previously unselected package libjpeg8:ppc64el. 390s Preparing to unpack .../022-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 390s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 390s Selecting previously unselected package liblcms2-2:ppc64el. 390s Preparing to unpack .../023-liblcms2-2_2.16-2_ppc64el.deb ... 390s Unpacking liblcms2-2:ppc64el (2.16-2) ... 391s Selecting previously unselected package liblqr-1-0:ppc64el. 391s Preparing to unpack .../024-liblqr-1-0_0.4.2-2.1build2_ppc64el.deb ... 391s Unpacking liblqr-1-0:ppc64el (0.4.2-2.1build2) ... 391s Selecting previously unselected package libltdl7:ppc64el. 391s Preparing to unpack .../025-libltdl7_2.5.4-4_ppc64el.deb ... 391s Unpacking libltdl7:ppc64el (2.5.4-4) ... 391s Selecting previously unselected package libopenjp2-7:ppc64el. 391s Preparing to unpack .../026-libopenjp2-7_2.5.3-2_ppc64el.deb ... 391s Unpacking libopenjp2-7:ppc64el (2.5.3-2) ... 391s Selecting previously unselected package libraw23t64:ppc64el. 391s Preparing to unpack .../027-libraw23t64_0.21.4-2_ppc64el.deb ... 391s Unpacking libraw23t64:ppc64el (0.21.4-2) ... 391s Selecting previously unselected package libdeflate0:ppc64el. 391s Preparing to unpack .../028-libdeflate0_1.23-2_ppc64el.deb ... 391s Unpacking libdeflate0:ppc64el (1.23-2) ... 391s Selecting previously unselected package liblerc4:ppc64el. 391s Preparing to unpack .../029-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 391s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 391s Selecting previously unselected package libwebp7:ppc64el. 391s Preparing to unpack .../030-libwebp7_1.5.0-0.1_ppc64el.deb ... 391s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 391s Selecting previously unselected package libtiff6:ppc64el. 391s Preparing to unpack .../031-libtiff6_4.7.0-3ubuntu1_ppc64el.deb ... 391s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu1) ... 391s Selecting previously unselected package libwebpdemux2:ppc64el. 391s Preparing to unpack .../032-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 391s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 391s Selecting previously unselected package libwebpmux3:ppc64el. 391s Preparing to unpack .../033-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 391s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 391s Selecting previously unselected package imagemagick-7-common. 391s Preparing to unpack .../034-imagemagick-7-common_8%3a7.1.1.43+dfsg1-1_all.deb ... 391s Unpacking imagemagick-7-common (8:7.1.1.43+dfsg1-1) ... 391s Selecting previously unselected package libmagickcore-7.q16-10:ppc64el. 391s Preparing to unpack .../035-libmagickcore-7.q16-10_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ... 391s Unpacking libmagickcore-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ... 391s Selecting previously unselected package libmagickwand-7.q16-10:ppc64el. 391s Preparing to unpack .../036-libmagickwand-7.q16-10_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ... 391s Unpacking libmagickwand-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ... 391s Selecting previously unselected package poppler-data. 391s Preparing to unpack .../037-poppler-data_0.4.12-1_all.deb ... 391s Unpacking poppler-data (0.4.12-1) ... 391s Selecting previously unselected package python3-numpy-dev:ppc64el. 391s Preparing to unpack .../038-python3-numpy-dev_1%3a2.2.3+ds-5_ppc64el.deb ... 391s Unpacking python3-numpy-dev:ppc64el (1:2.2.3+ds-5) ... 391s Selecting previously unselected package libblas3:ppc64el. 391s Preparing to unpack .../039-libblas3_3.12.1-2_ppc64el.deb ... 391s Unpacking libblas3:ppc64el (3.12.1-2) ... 391s Selecting previously unselected package libgfortran5:ppc64el. 391s Preparing to unpack .../040-libgfortran5_15-20250404-0ubuntu1_ppc64el.deb ... 391s Unpacking libgfortran5:ppc64el (15-20250404-0ubuntu1) ... 391s Selecting previously unselected package liblapack3:ppc64el. 391s Preparing to unpack .../041-liblapack3_3.12.1-2_ppc64el.deb ... 391s Unpacking liblapack3:ppc64el (3.12.1-2) ... 391s Selecting previously unselected package python3-numpy. 391s Preparing to unpack .../042-python3-numpy_1%3a2.2.3+ds-5_ppc64el.deb ... 391s Unpacking python3-numpy (1:2.2.3+ds-5) ... 391s Selecting previously unselected package sgml-base. 391s Preparing to unpack .../043-sgml-base_1.31_all.deb ... 391s Unpacking sgml-base (1.31) ... 391s Selecting previously unselected package autoconf. 391s Preparing to unpack .../044-autoconf_2.72-3ubuntu1_all.deb ... 391s Unpacking autoconf (2.72-3ubuntu1) ... 391s Selecting previously unselected package autotools-dev. 391s Preparing to unpack .../045-autotools-dev_20220109.1_all.deb ... 391s Unpacking autotools-dev (20220109.1) ... 391s Selecting previously unselected package automake. 391s Preparing to unpack .../046-automake_1%3a1.17-3ubuntu1_all.deb ... 391s Unpacking automake (1:1.17-3ubuntu1) ... 391s Selecting previously unselected package autopoint. 391s Preparing to unpack .../047-autopoint_0.23.1-1_all.deb ... 391s Unpacking autopoint (0.23.1-1) ... 391s Selecting previously unselected package libtcl8.6:ppc64el. 391s Preparing to unpack .../048-libtcl8.6_8.6.16+dfsg-1_ppc64el.deb ... 391s Unpacking libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 392s Selecting previously unselected package libxrender1:ppc64el. 392s Preparing to unpack .../049-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 392s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 392s Selecting previously unselected package libxft2:ppc64el. 392s Preparing to unpack .../050-libxft2_2.3.6-1build1_ppc64el.deb ... 392s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 392s Selecting previously unselected package libxss1:ppc64el. 392s Preparing to unpack .../051-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 392s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 392s Selecting previously unselected package libtk8.6:ppc64el. 392s Preparing to unpack .../052-libtk8.6_8.6.16-1_ppc64el.deb ... 392s Unpacking libtk8.6:ppc64el (8.6.16-1) ... 392s Selecting previously unselected package tk8.6-blt2.5. 392s Preparing to unpack .../053-tk8.6-blt2.5_2.5.3+dfsg-8_ppc64el.deb ... 392s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 392s Selecting previously unselected package blt. 392s Preparing to unpack .../054-blt_2.5.3+dfsg-8_ppc64el.deb ... 392s Unpacking blt (2.5.3+dfsg-8) ... 392s Selecting previously unselected package libisl23:ppc64el. 392s Preparing to unpack .../055-libisl23_0.27-1_ppc64el.deb ... 392s Unpacking libisl23:ppc64el (0.27-1) ... 392s Selecting previously unselected package libmpc3:ppc64el. 392s Preparing to unpack .../056-libmpc3_1.3.1-1build2_ppc64el.deb ... 392s Unpacking libmpc3:ppc64el (1.3.1-1build2) ... 392s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu. 392s Preparing to unpack .../057-cpp-14-powerpc64le-linux-gnu_14.2.0-19ubuntu2_ppc64el.deb ... 392s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ... 392s Selecting previously unselected package cpp-14. 392s Preparing to unpack .../058-cpp-14_14.2.0-19ubuntu2_ppc64el.deb ... 392s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 392s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 392s Preparing to unpack .../059-cpp-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 392s Unpacking cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 392s Selecting previously unselected package cpp. 392s Preparing to unpack .../060-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 392s Unpacking cpp (4:14.2.0-1ubuntu1) ... 392s Selecting previously unselected package libcc1-0:ppc64el. 392s Preparing to unpack .../061-libcc1-0_15-20250404-0ubuntu1_ppc64el.deb ... 392s Unpacking libcc1-0:ppc64el (15-20250404-0ubuntu1) ... 392s Selecting previously unselected package libitm1:ppc64el. 392s Preparing to unpack .../062-libitm1_15-20250404-0ubuntu1_ppc64el.deb ... 392s Unpacking libitm1:ppc64el (15-20250404-0ubuntu1) ... 392s Selecting previously unselected package libasan8:ppc64el. 392s Preparing to unpack .../063-libasan8_15-20250404-0ubuntu1_ppc64el.deb ... 392s Unpacking libasan8:ppc64el (15-20250404-0ubuntu1) ... 392s Selecting previously unselected package liblsan0:ppc64el. 392s Preparing to unpack .../064-liblsan0_15-20250404-0ubuntu1_ppc64el.deb ... 392s Unpacking liblsan0:ppc64el (15-20250404-0ubuntu1) ... 392s Selecting previously unselected package libtsan2:ppc64el. 392s Preparing to unpack .../065-libtsan2_15-20250404-0ubuntu1_ppc64el.deb ... 392s Unpacking libtsan2:ppc64el (15-20250404-0ubuntu1) ... 392s Selecting previously unselected package libubsan1:ppc64el. 392s Preparing to unpack .../066-libubsan1_15-20250404-0ubuntu1_ppc64el.deb ... 392s Unpacking libubsan1:ppc64el (15-20250404-0ubuntu1) ... 392s Selecting previously unselected package libquadmath0:ppc64el. 392s Preparing to unpack .../067-libquadmath0_15-20250404-0ubuntu1_ppc64el.deb ... 392s Unpacking libquadmath0:ppc64el (15-20250404-0ubuntu1) ... 392s Selecting previously unselected package libgcc-14-dev:ppc64el. 392s Preparing to unpack .../068-libgcc-14-dev_14.2.0-19ubuntu2_ppc64el.deb ... 392s Unpacking libgcc-14-dev:ppc64el (14.2.0-19ubuntu2) ... 392s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu. 392s Preparing to unpack .../069-gcc-14-powerpc64le-linux-gnu_14.2.0-19ubuntu2_ppc64el.deb ... 392s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ... 393s Selecting previously unselected package gcc-14. 393s Preparing to unpack .../070-gcc-14_14.2.0-19ubuntu2_ppc64el.deb ... 393s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 393s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 393s Preparing to unpack .../071-gcc-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 393s Unpacking gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 393s Selecting previously unselected package gcc. 393s Preparing to unpack .../072-gcc_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 393s Unpacking gcc (4:14.2.0-1ubuntu1) ... 393s Selecting previously unselected package libstdc++-14-dev:ppc64el. 393s Preparing to unpack .../073-libstdc++-14-dev_14.2.0-19ubuntu2_ppc64el.deb ... 393s Unpacking libstdc++-14-dev:ppc64el (14.2.0-19ubuntu2) ... 393s Selecting previously unselected package g++-14-powerpc64le-linux-gnu. 393s Preparing to unpack .../074-g++-14-powerpc64le-linux-gnu_14.2.0-19ubuntu2_ppc64el.deb ... 393s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-19ubuntu2) ... 393s Selecting previously unselected package g++-14. 393s Preparing to unpack .../075-g++-14_14.2.0-19ubuntu2_ppc64el.deb ... 393s Unpacking g++-14 (14.2.0-19ubuntu2) ... 393s Selecting previously unselected package g++-powerpc64le-linux-gnu. 393s Preparing to unpack .../076-g++-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 393s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 393s Selecting previously unselected package g++. 393s Preparing to unpack .../077-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 393s Unpacking g++ (4:14.2.0-1ubuntu1) ... 393s Selecting previously unselected package build-essential. 393s Preparing to unpack .../078-build-essential_12.12ubuntu1_ppc64el.deb ... 393s Unpacking build-essential (12.12ubuntu1) ... 393s Selecting previously unselected package bwa. 393s Preparing to unpack .../079-bwa_0.7.18-1_ppc64el.deb ... 393s Unpacking bwa (0.7.18-1) ... 393s Selecting previously unselected package libargtable2-0. 393s Preparing to unpack .../080-libargtable2-0_13-3_ppc64el.deb ... 393s Unpacking libargtable2-0 (13-3) ... 393s Selecting previously unselected package clustalo. 393s Preparing to unpack .../081-clustalo_1.2.4-8build1_ppc64el.deb ... 393s Unpacking clustalo (1.2.4-8build1) ... 393s Selecting previously unselected package libdebhelper-perl. 393s Preparing to unpack .../082-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 393s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 393s Selecting previously unselected package libtool. 393s Preparing to unpack .../083-libtool_2.5.4-4_all.deb ... 393s Unpacking libtool (2.5.4-4) ... 393s Selecting previously unselected package dh-autoreconf. 393s Preparing to unpack .../084-dh-autoreconf_20_all.deb ... 393s Unpacking dh-autoreconf (20) ... 393s Selecting previously unselected package libarchive-zip-perl. 393s Preparing to unpack .../085-libarchive-zip-perl_1.68-1_all.deb ... 393s Unpacking libarchive-zip-perl (1.68-1) ... 393s Selecting previously unselected package libfile-stripnondeterminism-perl. 393s Preparing to unpack .../086-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 393s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 393s Selecting previously unselected package dh-strip-nondeterminism. 393s Preparing to unpack .../087-dh-strip-nondeterminism_1.14.1-2_all.deb ... 393s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 393s Selecting previously unselected package debugedit. 393s Preparing to unpack .../088-debugedit_1%3a5.1-2_ppc64el.deb ... 393s Unpacking debugedit (1:5.1-2) ... 393s Selecting previously unselected package dwz. 393s Preparing to unpack .../089-dwz_0.15-1build6_ppc64el.deb ... 393s Unpacking dwz (0.15-1build6) ... 393s Selecting previously unselected package gettext. 393s Preparing to unpack .../090-gettext_0.23.1-1_ppc64el.deb ... 393s Unpacking gettext (0.23.1-1) ... 393s Selecting previously unselected package intltool-debian. 393s Preparing to unpack .../091-intltool-debian_0.35.0+20060710.6_all.deb ... 393s Unpacking intltool-debian (0.35.0+20060710.6) ... 393s Selecting previously unselected package po-debconf. 393s Preparing to unpack .../092-po-debconf_1.0.21+nmu1_all.deb ... 393s Unpacking po-debconf (1.0.21+nmu1) ... 393s Selecting previously unselected package debhelper. 393s Preparing to unpack .../093-debhelper_13.24.1ubuntu2_all.deb ... 393s Unpacking debhelper (13.24.1ubuntu2) ... 393s Selecting previously unselected package dh-python. 393s Preparing to unpack .../094-dh-python_6.20250308_all.deb ... 393s Unpacking dh-python (6.20250308) ... 394s Selecting previously unselected package dialign. 394s Preparing to unpack .../095-dialign_2.2.1-13_ppc64el.deb ... 394s Unpacking dialign (2.2.1-13) ... 394s Selecting previously unselected package xml-core. 394s Preparing to unpack .../096-xml-core_0.19_all.deb ... 394s Unpacking xml-core (0.19) ... 394s Selecting previously unselected package docutils-common. 394s Preparing to unpack .../097-docutils-common_0.21.2+dfsg-2_all.deb ... 394s Unpacking docutils-common (0.21.2+dfsg-2) ... 394s Selecting previously unselected package libcifpp-data. 394s Preparing to unpack .../098-libcifpp-data_7.0.9-1_all.deb ... 394s Unpacking libcifpp-data (7.0.9-1) ... 394s Selecting previously unselected package libcifpp7:ppc64el. 394s Preparing to unpack .../099-libcifpp7_7.0.9-1_ppc64el.deb ... 394s Unpacking libcifpp7:ppc64el (7.0.9-1) ... 394s Selecting previously unselected package dssp. 394s Preparing to unpack .../100-dssp_4.4.10-1_ppc64el.deb ... 394s Unpacking dssp (4.4.10-1) ... 394s Selecting previously unselected package libimagequant0:ppc64el. 394s Preparing to unpack .../101-libimagequant0_2.18.0-1build1_ppc64el.deb ... 394s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 394s Selecting previously unselected package libgraphite2-3:ppc64el. 394s Preparing to unpack .../102-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 394s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 394s Selecting previously unselected package libharfbuzz0b:ppc64el. 394s Preparing to unpack .../103-libharfbuzz0b_10.2.0-1_ppc64el.deb ... 394s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ... 394s Selecting previously unselected package libraqm0:ppc64el. 394s Preparing to unpack .../104-libraqm0_0.10.2-1_ppc64el.deb ... 394s Unpacking libraqm0:ppc64el (0.10.2-1) ... 394s Selecting previously unselected package libxpm4:ppc64el. 394s Preparing to unpack .../105-libxpm4_1%3a3.5.17-1build2_ppc64el.deb ... 394s Unpacking libxpm4:ppc64el (1:3.5.17-1build2) ... 394s Selecting previously unselected package libgd3:ppc64el. 394s Preparing to unpack .../106-libgd3_2.3.3-12ubuntu3_ppc64el.deb ... 394s Unpacking libgd3:ppc64el (2.3.3-12ubuntu3) ... 394s Selecting previously unselected package libhpdf-2.3.0:ppc64el. 394s Preparing to unpack .../107-libhpdf-2.3.0_2.3.0+dfsg-1build3_ppc64el.deb ... 394s Unpacking libhpdf-2.3.0:ppc64el (2.3.0+dfsg-1build3) ... 394s Selecting previously unselected package mysql-common. 394s Preparing to unpack .../108-mysql-common_5.8+1.1.1ubuntu1_all.deb ... 394s Unpacking mysql-common (5.8+1.1.1ubuntu1) ... 394s Selecting previously unselected package libmysqlclient24:ppc64el. 394s Preparing to unpack .../109-libmysqlclient24_8.4.4-0ubuntu2_ppc64el.deb ... 394s Unpacking libmysqlclient24:ppc64el (8.4.4-0ubuntu2) ... 394s Selecting previously unselected package libpq5:ppc64el. 394s Preparing to unpack .../110-libpq5_17.4-1_ppc64el.deb ... 394s Unpacking libpq5:ppc64el (17.4-1) ... 394s Selecting previously unselected package emboss-lib. 394s Preparing to unpack .../111-emboss-lib_6.6.0+dfsg-15ubuntu2_ppc64el.deb ... 394s Unpacking emboss-lib (6.6.0+dfsg-15ubuntu2) ... 394s Selecting previously unselected package emboss-data. 394s Preparing to unpack .../112-emboss-data_6.6.0+dfsg-15ubuntu2_all.deb ... 395s Unpacking emboss-data (6.6.0+dfsg-15ubuntu2) ... 399s Selecting previously unselected package emboss. 399s Preparing to unpack .../113-emboss_6.6.0+dfsg-15ubuntu2_ppc64el.deb ... 399s Unpacking emboss (6.6.0+dfsg-15ubuntu2) ... 399s Selecting previously unselected package fonts-font-awesome. 399s Preparing to unpack .../114-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 399s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 399s Selecting previously unselected package fonts-lmodern. 399s Preparing to unpack .../115-fonts-lmodern_2.005-1_all.deb ... 399s Unpacking fonts-lmodern (2.005-1) ... 399s Selecting previously unselected package fonts-lyx. 399s Preparing to unpack .../116-fonts-lyx_2.4.3-1_all.deb ... 399s Unpacking fonts-lyx (2.4.3-1) ... 399s Selecting previously unselected package libgs-common. 399s Preparing to unpack .../117-libgs-common_10.05.0dfsg1-0ubuntu1_all.deb ... 399s Unpacking libgs-common (10.05.0dfsg1-0ubuntu1) ... 399s Selecting previously unselected package libgs10-common. 399s Preparing to unpack .../118-libgs10-common_10.05.0dfsg1-0ubuntu1_all.deb ... 399s Unpacking libgs10-common (10.05.0dfsg1-0ubuntu1) ... 399s Selecting previously unselected package libavahi-common-data:ppc64el. 399s Preparing to unpack .../119-libavahi-common-data_0.8-16ubuntu2_ppc64el.deb ... 399s Unpacking libavahi-common-data:ppc64el (0.8-16ubuntu2) ... 399s Selecting previously unselected package libavahi-common3:ppc64el. 399s Preparing to unpack .../120-libavahi-common3_0.8-16ubuntu2_ppc64el.deb ... 399s Unpacking libavahi-common3:ppc64el (0.8-16ubuntu2) ... 399s Selecting previously unselected package libavahi-client3:ppc64el. 399s Preparing to unpack .../121-libavahi-client3_0.8-16ubuntu2_ppc64el.deb ... 399s Unpacking libavahi-client3:ppc64el (0.8-16ubuntu2) ... 399s Selecting previously unselected package libcups2t64:ppc64el. 399s Preparing to unpack .../122-libcups2t64_2.4.12-0ubuntu1_ppc64el.deb ... 399s Unpacking libcups2t64:ppc64el (2.4.12-0ubuntu1) ... 399s Selecting previously unselected package libidn12:ppc64el. 399s Preparing to unpack .../123-libidn12_1.43-1_ppc64el.deb ... 399s Unpacking libidn12:ppc64el (1.43-1) ... 399s Selecting previously unselected package libijs-0.35:ppc64el. 399s Preparing to unpack .../124-libijs-0.35_0.35-15.2_ppc64el.deb ... 399s Unpacking libijs-0.35:ppc64el (0.35-15.2) ... 399s Selecting previously unselected package libjbig2dec0:ppc64el. 399s Preparing to unpack .../125-libjbig2dec0_0.20-1build3_ppc64el.deb ... 399s Unpacking libjbig2dec0:ppc64el (0.20-1build3) ... 399s Selecting previously unselected package libpaper2:ppc64el. 399s Preparing to unpack .../126-libpaper2_2.2.5-0.3_ppc64el.deb ... 399s Unpacking libpaper2:ppc64el (2.2.5-0.3) ... 399s Selecting previously unselected package libice6:ppc64el. 399s Preparing to unpack .../127-libice6_2%3a1.1.1-1_ppc64el.deb ... 399s Unpacking libice6:ppc64el (2:1.1.1-1) ... 399s Selecting previously unselected package libsm6:ppc64el. 399s Preparing to unpack .../128-libsm6_2%3a1.2.4-1_ppc64el.deb ... 399s Unpacking libsm6:ppc64el (2:1.2.4-1) ... 399s Selecting previously unselected package libxt6t64:ppc64el. 399s Preparing to unpack .../129-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ... 399s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 399s Selecting previously unselected package libgs10:ppc64el. 399s Preparing to unpack .../130-libgs10_10.05.0dfsg1-0ubuntu1_ppc64el.deb ... 399s Unpacking libgs10:ppc64el (10.05.0dfsg1-0ubuntu1) ... 399s Selecting previously unselected package ghostscript. 399s Preparing to unpack .../131-ghostscript_10.05.0dfsg1-0ubuntu1_ppc64el.deb ... 399s Unpacking ghostscript (10.05.0dfsg1-0ubuntu1) ... 399s Selecting previously unselected package libnetpbm11t64:ppc64el. 399s Preparing to unpack .../132-libnetpbm11t64_2%3a11.09.02-2_ppc64el.deb ... 399s Unpacking libnetpbm11t64:ppc64el (2:11.09.02-2) ... 399s Selecting previously unselected package netpbm. 399s Preparing to unpack .../133-netpbm_2%3a11.09.02-2_ppc64el.deb ... 399s Unpacking netpbm (2:11.09.02-2) ... 400s Selecting previously unselected package tex-common. 400s Preparing to unpack .../134-tex-common_6.19_all.deb ... 400s Unpacking tex-common (6.19) ... 400s Selecting previously unselected package libpaper-utils. 400s Preparing to unpack .../135-libpaper-utils_2.2.5-0.3_ppc64el.deb ... 400s Unpacking libpaper-utils (2.2.5-0.3) ... 400s Selecting previously unselected package libkpathsea6:ppc64el. 400s Preparing to unpack .../136-libkpathsea6_2024.20240313.70630+ds-6_ppc64el.deb ... 400s Unpacking libkpathsea6:ppc64el (2024.20240313.70630+ds-6) ... 400s Selecting previously unselected package libptexenc1:ppc64el. 400s Preparing to unpack .../137-libptexenc1_2024.20240313.70630+ds-6_ppc64el.deb ... 400s Unpacking libptexenc1:ppc64el (2024.20240313.70630+ds-6) ... 400s Selecting previously unselected package libsynctex2:ppc64el. 400s Preparing to unpack .../138-libsynctex2_2024.20240313.70630+ds-6_ppc64el.deb ... 400s Unpacking libsynctex2:ppc64el (2024.20240313.70630+ds-6) ... 400s Selecting previously unselected package libtexlua53-5:ppc64el. 400s Preparing to unpack .../139-libtexlua53-5_2024.20240313.70630+ds-6_ppc64el.deb ... 400s Unpacking libtexlua53-5:ppc64el (2024.20240313.70630+ds-6) ... 400s Selecting previously unselected package t1utils. 400s Preparing to unpack .../140-t1utils_1.41-4build3_ppc64el.deb ... 400s Unpacking t1utils (1.41-4build3) ... 400s Selecting previously unselected package libpixman-1-0:ppc64el. 400s Preparing to unpack .../141-libpixman-1-0_0.44.0-3_ppc64el.deb ... 400s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 400s Selecting previously unselected package libxcb-render0:ppc64el. 400s Preparing to unpack .../142-libxcb-render0_1.17.0-2_ppc64el.deb ... 400s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 400s Selecting previously unselected package libxcb-shm0:ppc64el. 400s Preparing to unpack .../143-libxcb-shm0_1.17.0-2_ppc64el.deb ... 400s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 400s Selecting previously unselected package libcairo2:ppc64el. 400s Preparing to unpack .../144-libcairo2_1.18.4-1_ppc64el.deb ... 400s Unpacking libcairo2:ppc64el (1.18.4-1) ... 400s Selecting previously unselected package libmpfi0:ppc64el. 400s Preparing to unpack .../145-libmpfi0_1.5.4+ds-4_ppc64el.deb ... 400s Unpacking libmpfi0:ppc64el (1.5.4+ds-4) ... 400s Selecting previously unselected package libpotrace0:ppc64el. 400s Preparing to unpack .../146-libpotrace0_1.16-2build1_ppc64el.deb ... 400s Unpacking libpotrace0:ppc64el (1.16-2build1) ... 400s Selecting previously unselected package libteckit0:ppc64el. 400s Preparing to unpack .../147-libteckit0_2.5.12+ds1-1_ppc64el.deb ... 400s Unpacking libteckit0:ppc64el (2.5.12+ds1-1) ... 400s Selecting previously unselected package libxmu6:ppc64el. 400s Preparing to unpack .../148-libxmu6_2%3a1.1.3-3build2_ppc64el.deb ... 400s Unpacking libxmu6:ppc64el (2:1.1.3-3build2) ... 400s Selecting previously unselected package libxaw7:ppc64el. 400s Preparing to unpack .../149-libxaw7_2%3a1.0.16-1_ppc64el.deb ... 400s Unpacking libxaw7:ppc64el (2:1.0.16-1) ... 400s Selecting previously unselected package libxi6:ppc64el. 400s Preparing to unpack .../150-libxi6_2%3a1.8.2-1_ppc64el.deb ... 400s Unpacking libxi6:ppc64el (2:1.8.2-1) ... 400s Selecting previously unselected package libzzip-0-13t64:ppc64el. 400s Preparing to unpack .../151-libzzip-0-13t64_0.13.78+dfsg.1-0.1_ppc64el.deb ... 400s Unpacking libzzip-0-13t64:ppc64el (0.13.78+dfsg.1-0.1) ... 400s Selecting previously unselected package texlive-binaries. 400s Preparing to unpack .../152-texlive-binaries_2024.20240313.70630+ds-6_ppc64el.deb ... 400s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 401s Selecting previously unselected package xdg-utils. 401s Preparing to unpack .../153-xdg-utils_1.2.1-2ubuntu1_all.deb ... 401s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 401s Selecting previously unselected package texlive-base. 401s Preparing to unpack .../154-texlive-base_2024.20250309-1_all.deb ... 401s Unpacking texlive-base (2024.20250309-1) ... 402s Selecting previously unselected package hicolor-icon-theme. 402s Preparing to unpack .../155-hicolor-icon-theme_0.18-2_all.deb ... 402s Unpacking hicolor-icon-theme (0.18-2) ... 402s Selecting previously unselected package imagemagick-7.q16. 402s Preparing to unpack .../156-imagemagick-7.q16_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ... 402s Unpacking imagemagick-7.q16 (8:7.1.1.43+dfsg1-1) ... 402s Selecting previously unselected package imagemagick. 402s Preparing to unpack .../157-imagemagick_8%3a7.1.1.43+dfsg1-1_ppc64el.deb ... 402s Unpacking imagemagick (8:7.1.1.43+dfsg1-1) ... 402s Selecting previously unselected package hevea. 402s Preparing to unpack .../158-hevea_2.36-2_ppc64el.deb ... 402s Unpacking hevea (2.36-2) ... 402s Selecting previously unselected package libsuitesparseconfig7:ppc64el. 402s Preparing to unpack .../159-libsuitesparseconfig7_1%3a7.8.3+dfsg-3_ppc64el.deb ... 402s Unpacking libsuitesparseconfig7:ppc64el (1:7.8.3+dfsg-3) ... 402s Selecting previously unselected package libamd3:ppc64el. 402s Preparing to unpack .../160-libamd3_1%3a7.8.3+dfsg-3_ppc64el.deb ... 402s Unpacking libamd3:ppc64el (1:7.8.3+dfsg-3) ... 402s Selecting previously unselected package libapache-pom-java. 402s Preparing to unpack .../161-libapache-pom-java_33-2_all.deb ... 402s Unpacking libapache-pom-java (33-2) ... 402s Selecting previously unselected package libarpack2t64:ppc64el. 402s Preparing to unpack .../162-libarpack2t64_3.9.1-4_ppc64el.deb ... 402s Unpacking libarpack2t64:ppc64el (3.9.1-4) ... 402s Selecting previously unselected package libcolamd3:ppc64el. 402s Preparing to unpack .../163-libcolamd3_1%3a7.8.3+dfsg-3_ppc64el.deb ... 402s Unpacking libcolamd3:ppc64el (1:7.8.3+dfsg-3) ... 402s Selecting previously unselected package libcommons-parent-java. 402s Preparing to unpack .../164-libcommons-parent-java_56-1_all.deb ... 402s Unpacking libcommons-parent-java (56-1) ... 402s Selecting previously unselected package libcommons-logging-java. 402s Preparing to unpack .../165-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 402s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 402s Selecting previously unselected package libexpat1-dev:ppc64el. 402s Preparing to unpack .../166-libexpat1-dev_2.7.1-1_ppc64el.deb ... 402s Unpacking libexpat1-dev:ppc64el (2.7.1-1) ... 402s Selecting previously unselected package libglpk40:ppc64el. 402s Preparing to unpack .../167-libglpk40_5.0-1build2_ppc64el.deb ... 402s Unpacking libglpk40:ppc64el (5.0-1build2) ... 402s Selecting previously unselected package libplfit0:ppc64el. 402s Preparing to unpack .../168-libplfit0_0.9.6+ds-2ubuntu1_ppc64el.deb ... 402s Unpacking libplfit0:ppc64el (0.9.6+ds-2ubuntu1) ... 402s Selecting previously unselected package libigraph3t64:ppc64el. 402s Preparing to unpack .../169-libigraph3t64_0.10.15+ds-3_ppc64el.deb ... 402s Unpacking libigraph3t64:ppc64el (0.10.15+ds-3) ... 402s Selecting previously unselected package libjs-jquery. 402s Preparing to unpack .../170-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 402s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 402s Selecting previously unselected package libjs-jquery-ui. 402s Preparing to unpack .../171-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 402s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 403s Selecting previously unselected package libjs-underscore. 403s Preparing to unpack .../172-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 403s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 403s Selecting previously unselected package libjs-sphinxdoc. 403s Preparing to unpack .../173-libjs-sphinxdoc_8.1.3-5_all.deb ... 403s Unpacking libjs-sphinxdoc (8.1.3-5) ... 403s Selecting previously unselected package libjson-perl. 403s Preparing to unpack .../174-libjson-perl_4.10000-1_all.deb ... 403s Unpacking libjson-perl (4.10000-1) ... 403s Selecting previously unselected package liblbfgsb0:ppc64el. 403s Preparing to unpack .../175-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 403s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 403s Selecting previously unselected package libmbedcrypto16:ppc64el. 403s Preparing to unpack .../176-libmbedcrypto16_3.6.2-3ubuntu1_ppc64el.deb ... 403s Unpacking libmbedcrypto16:ppc64el (3.6.2-3ubuntu1) ... 403s Selecting previously unselected package libmbedx509-7:ppc64el. 403s Preparing to unpack .../177-libmbedx509-7_3.6.2-3ubuntu1_ppc64el.deb ... 403s Unpacking libmbedx509-7:ppc64el (3.6.2-3ubuntu1) ... 403s Selecting previously unselected package libmbedtls21:ppc64el. 403s Preparing to unpack .../178-libmbedtls21_3.6.2-3ubuntu1_ppc64el.deb ... 403s Unpacking libmbedtls21:ppc64el (3.6.2-3ubuntu1) ... 403s Selecting previously unselected package zlib1g-dev:ppc64el. 403s Preparing to unpack .../179-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 403s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 403s Selecting previously unselected package libpython3.13-dev:ppc64el. 403s Preparing to unpack .../180-libpython3.13-dev_3.13.3-1_ppc64el.deb ... 403s Unpacking libpython3.13-dev:ppc64el (3.13.3-1) ... 403s Selecting previously unselected package libpython3-dev:ppc64el. 403s Preparing to unpack .../181-libpython3-dev_3.13.3-1_ppc64el.deb ... 403s Unpacking libpython3-dev:ppc64el (3.13.3-1) ... 403s Selecting previously unselected package libpython3-all-dev:ppc64el. 403s Preparing to unpack .../182-libpython3-all-dev_3.13.3-1_ppc64el.deb ... 403s Unpacking libpython3-all-dev:ppc64el (3.13.3-1) ... 403s Selecting previously unselected package libqhull-r8.0:ppc64el. 403s Preparing to unpack .../183-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 403s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 403s Selecting previously unselected package libxslt1.1:ppc64el. 403s Preparing to unpack .../184-libxslt1.1_1.1.39-0exp1ubuntu4_ppc64el.deb ... 403s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu4) ... 403s Selecting previously unselected package mafft. 403s Preparing to unpack .../185-mafft_7.505-1_ppc64el.deb ... 403s Unpacking mafft (7.505-1) ... 403s Selecting previously unselected package ncbi-data. 403s Preparing to unpack .../186-ncbi-data_6.1.20170106+dfsg2-5_all.deb ... 403s Unpacking ncbi-data (6.1.20170106+dfsg2-5) ... 403s Selecting previously unselected package ncbi-blast+. 403s Preparing to unpack .../187-ncbi-blast+_2.16.0+ds-6build1_ppc64el.deb ... 403s Unpacking ncbi-blast+ (2.16.0+ds-6build1) ... 404s Selecting previously unselected package phylip. 404s Preparing to unpack .../188-phylip_1%3a3.697+dfsg-4build1_ppc64el.deb ... 404s Unpacking phylip (1:3.697+dfsg-4build1) ... 404s Selecting previously unselected package prank. 404s Preparing to unpack .../189-prank_0.0.170427+dfsg-3_ppc64el.deb ... 404s Unpacking prank (0.0.170427+dfsg-3) ... 404s Selecting previously unselected package preview-latex-style. 404s Preparing to unpack .../190-preview-latex-style_13.2-1_all.deb ... 404s Unpacking preview-latex-style (13.2-1) ... 404s Selecting previously unselected package probcons. 404s Preparing to unpack .../191-probcons_1.12-14_ppc64el.deb ... 404s Unpacking probcons (1.12-14) ... 404s Selecting previously unselected package python-biopython-doc. 404s Preparing to unpack .../192-python-biopython-doc_1.85+dfsg-2build1_all.deb ... 404s Unpacking python-biopython-doc (1.85+dfsg-2build1) ... 404s Selecting previously unselected package python-matplotlib-data. 404s Preparing to unpack .../193-python-matplotlib-data_3.8.3-7build1_all.deb ... 404s Unpacking python-matplotlib-data (3.8.3-7build1) ... 404s Selecting previously unselected package python3-all. 404s Preparing to unpack .../194-python3-all_3.13.3-1_ppc64el.deb ... 404s Unpacking python3-all (3.13.3-1) ... 404s Selecting previously unselected package python3.13-dev. 404s Preparing to unpack .../195-python3.13-dev_3.13.3-1_ppc64el.deb ... 404s Unpacking python3.13-dev (3.13.3-1) ... 404s Selecting previously unselected package python3-dev. 404s Preparing to unpack .../196-python3-dev_3.13.3-1_ppc64el.deb ... 404s Unpacking python3-dev (3.13.3-1) ... 404s Selecting previously unselected package python3-all-dev. 404s Preparing to unpack .../197-python3-all-dev_3.13.3-1_ppc64el.deb ... 404s Unpacking python3-all-dev (3.13.3-1) ... 404s Selecting previously unselected package python3.13-tk. 404s Preparing to unpack .../198-python3.13-tk_3.13.3-1_ppc64el.deb ... 404s Unpacking python3.13-tk (3.13.3-1) ... 404s Selecting previously unselected package python3-tk:ppc64el. 404s Preparing to unpack .../199-python3-tk_3.13.3-1_ppc64el.deb ... 404s Unpacking python3-tk:ppc64el (3.13.3-1) ... 404s Selecting previously unselected package python3-pil.imagetk:ppc64el. 404s Preparing to unpack .../200-python3-pil.imagetk_11.1.0-5build1_ppc64el.deb ... 404s Unpacking python3-pil.imagetk:ppc64el (11.1.0-5build1) ... 404s Selecting previously unselected package python3-pil:ppc64el. 404s Preparing to unpack .../201-python3-pil_11.1.0-5build1_ppc64el.deb ... 404s Unpacking python3-pil:ppc64el (11.1.0-5build1) ... 404s Selecting previously unselected package python3-cairo. 404s Preparing to unpack .../202-python3-cairo_1.27.0-2_ppc64el.deb ... 404s Unpacking python3-cairo (1.27.0-2) ... 405s Selecting previously unselected package python3-freetype. 405s Preparing to unpack .../203-python3-freetype_2.5.1-1_all.deb ... 405s Unpacking python3-freetype (2.5.1-1) ... 405s Selecting previously unselected package python3-rlpycairo. 405s Preparing to unpack .../204-python3-rlpycairo_0.3.0-3_all.deb ... 405s Unpacking python3-rlpycairo (0.3.0-3) ... 405s Selecting previously unselected package python3-reportlab. 405s Preparing to unpack .../205-python3-reportlab_4.3.1-1_all.deb ... 405s Unpacking python3-reportlab (4.3.1-1) ... 405s Selecting previously unselected package w3c-sgml-lib. 405s Preparing to unpack .../206-w3c-sgml-lib_1.3-3_all.deb ... 405s Unpacking w3c-sgml-lib (1.3-3) ... 405s Selecting previously unselected package python3-biopython. 405s Preparing to unpack .../207-python3-biopython_1.85+dfsg-2build1_ppc64el.deb ... 405s Unpacking python3-biopython (1.85+dfsg-2build1) ... 405s Selecting previously unselected package python3-biopython-sql. 405s Preparing to unpack .../208-python3-biopython-sql_1.85+dfsg-2build1_all.deb ... 405s Unpacking python3-biopython-sql (1.85+dfsg-2build1) ... 405s Selecting previously unselected package python3-brotli. 405s Preparing to unpack .../209-python3-brotli_1.1.0-2build4_ppc64el.deb ... 405s Unpacking python3-brotli (1.1.0-2build4) ... 405s Selecting previously unselected package python3-contourpy. 405s Preparing to unpack .../210-python3-contourpy_1.3.1-1build1_ppc64el.deb ... 405s Unpacking python3-contourpy (1.3.1-1build1) ... 405s Selecting previously unselected package python3-cycler. 405s Preparing to unpack .../211-python3-cycler_0.12.1-1_all.deb ... 405s Unpacking python3-cycler (0.12.1-1) ... 405s Selecting previously unselected package python3-decorator. 405s Preparing to unpack .../212-python3-decorator_5.1.1-5_all.deb ... 405s Unpacking python3-decorator (5.1.1-5) ... 405s Selecting previously unselected package python3-defusedxml. 405s Preparing to unpack .../213-python3-defusedxml_0.7.1-3_all.deb ... 405s Unpacking python3-defusedxml (0.7.1-3) ... 405s Selecting previously unselected package python3-roman. 405s Preparing to unpack .../214-python3-roman_5.0-1_all.deb ... 405s Unpacking python3-roman (5.0-1) ... 405s Selecting previously unselected package python3-docutils. 405s Preparing to unpack .../215-python3-docutils_0.21.2+dfsg-2_all.deb ... 405s Unpacking python3-docutils (0.21.2+dfsg-2) ... 405s Selecting previously unselected package python3-platformdirs. 405s Preparing to unpack .../216-python3-platformdirs_4.3.6-1_all.deb ... 405s Unpacking python3-platformdirs (4.3.6-1) ... 405s Selecting previously unselected package python3-fs. 405s Preparing to unpack .../217-python3-fs_2.4.16-7_all.deb ... 405s Unpacking python3-fs (2.4.16-7) ... 405s Selecting previously unselected package python3-lxml:ppc64el. 405s Preparing to unpack .../218-python3-lxml_5.3.2-1_ppc64el.deb ... 405s Unpacking python3-lxml:ppc64el (5.3.2-1) ... 405s Selecting previously unselected package python3-lz4. 405s Preparing to unpack .../219-python3-lz4_4.4.0+dfsg-1build1_ppc64el.deb ... 405s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ... 405s Selecting previously unselected package python3-scipy. 405s Preparing to unpack .../220-python3-scipy_1.14.1-4ubuntu2_ppc64el.deb ... 405s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 406s Selecting previously unselected package python3-mpmath. 406s Preparing to unpack .../221-python3-mpmath_1.3.0-1_all.deb ... 406s Unpacking python3-mpmath (1.3.0-1) ... 406s Selecting previously unselected package python3-sympy. 406s Preparing to unpack .../222-python3-sympy_1.13.3-5_all.deb ... 406s Unpacking python3-sympy (1.13.3-5) ... 406s Selecting previously unselected package python3-ufolib2. 406s Preparing to unpack .../223-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 406s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 406s Selecting previously unselected package unicode-data. 406s Preparing to unpack .../224-unicode-data_15.1.0-1_all.deb ... 406s Unpacking unicode-data (15.1.0-1) ... 406s Selecting previously unselected package python3-fonttools. 406s Preparing to unpack .../225-python3-fonttools_4.55.3-2build1_ppc64el.deb ... 406s Unpacking python3-fonttools (4.55.3-2build1) ... 406s Selecting previously unselected package python3-imagesize. 406s Preparing to unpack .../226-python3-imagesize_1.4.1-1_all.deb ... 406s Unpacking python3-imagesize (1.4.1-1) ... 406s Selecting previously unselected package python3-kiwisolver. 406s Preparing to unpack .../227-python3-kiwisolver_1.4.7-3build1_ppc64el.deb ... 406s Unpacking python3-kiwisolver (1.4.7-3build1) ... 406s Selecting previously unselected package python3-matplotlib. 406s Preparing to unpack .../228-python3-matplotlib_3.8.3-7build1_ppc64el.deb ... 406s Unpacking python3-matplotlib (3.8.3-7build1) ... 407s Selecting previously unselected package python3-msgpack. 407s Preparing to unpack .../229-python3-msgpack_1.0.3-3build4_ppc64el.deb ... 407s Unpacking python3-msgpack (1.0.3-3build4) ... 407s Selecting previously unselected package python3-mmtf. 407s Preparing to unpack .../230-python3-mmtf_1.1.3-1_all.deb ... 407s Unpacking python3-mmtf (1.1.3-1) ... 407s Selecting previously unselected package python3-mysqldb. 407s Preparing to unpack .../231-python3-mysqldb_1.4.6-2build6_ppc64el.deb ... 407s Unpacking python3-mysqldb (1.4.6-2build6) ... 407s Selecting previously unselected package python3-networkx. 407s Preparing to unpack .../232-python3-networkx_3.2.1-4ubuntu1_all.deb ... 407s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 408s Selecting previously unselected package sphinx-common. 408s Preparing to unpack .../233-sphinx-common_8.1.3-5_all.deb ... 408s Unpacking sphinx-common (8.1.3-5) ... 408s Selecting previously unselected package python3-alabaster. 408s Preparing to unpack .../234-python3-alabaster_0.7.16-0.1_all.deb ... 408s Unpacking python3-alabaster (0.7.16-0.1) ... 408s Selecting previously unselected package python3-snowballstemmer. 408s Preparing to unpack .../235-python3-snowballstemmer_2.2.0-4build1_all.deb ... 408s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 408s Selecting previously unselected package python3-sphinx. 408s Preparing to unpack .../236-python3-sphinx_8.1.3-5_all.deb ... 408s Unpacking python3-sphinx (8.1.3-5) ... 408s Selecting previously unselected package python3-tabulate. 408s 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libaom3:ppc64el (3.12.1-1) ... 414s Setting up mysql-common (5.8+1.1.1ubuntu1) ... 414s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode 414s Setting up libhpdf-2.3.0:ppc64el (2.3.0+dfsg-1build3) ... 414s Setting up fonts-lato (2.015-1) ... 414s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 414s Setting up libxpm4:ppc64el (1:3.5.17-1build2) ... 414s Setting up hicolor-icon-theme (0.18-2) ... 414s Setting up libxi6:ppc64el (2:1.8.2-1) ... 414s Setting up probcons (1.12-14) ... 414s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 414s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 414s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 414s Setting up python3-defusedxml (0.7.1-3) ... 414s Setting up mafft (7.505-1) ... 414s Setting up libarchive-zip-perl (1.68-1) ... 414s Setting up imagemagick-7-common (8:7.1.1.43+dfsg1-1) ... 414s Setting up bwa (0.7.18-1) ... 414s Setting up python3-alabaster (0.7.16-0.1) ... 414s Setting up fonts-lyx (2.4.3-1) ... 414s Setting up libijs-0.35:ppc64el (0.35-15.2) ... 414s Setting up libdebhelper-perl (13.24.1ubuntu2) ... 414s Setting up libgs-common (10.05.0dfsg1-0ubuntu1) ... 414s Setting up libfontbox-java (1:1.8.16-5) ... 414s Setting up phylip (1:3.697+dfsg-4build1) ... 414s Setting up x11-common (1:7.7+23ubuntu4) ... 415s Setting up libpq5:ppc64el (17.4-1) ... 415s Setting up libdeflate0:ppc64el (1.23-2) ... 415s Setting up python3-tabulate (0.9.0-1) ... 415s Setting up m4 (1.4.19-7) ... 415s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ... 415s Setting up python3-all (3.13.3-1) ... 415s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 415s Setting up libgomp1:ppc64el (15-20250404-0ubuntu1) ... 415s Setting up python3-freetype (2.5.1-1) ... 416s Setting up emboss-data (6.6.0+dfsg-15ubuntu2) ... 416s Setting up python3-networkx (3.2.1-4ubuntu1) ... 417s Setting up libmysqlclient24:ppc64el (8.4.4-0ubuntu2) ... 417s Setting up libjbig0:ppc64el 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up libzzip-0-13t64:ppc64el (0.13.78+dfsg.1-0.1) ... 418s Setting up libjbig2dec0:ppc64el (0.20-1build3) ... 418s Setting up python3-snowballstemmer (2.2.0-4build1) ... 418s Setting up libteckit0:ppc64el (2.5.12+ds1-1) ... 418s Setting up python3-brotli (1.1.0-2build4) ... 418s Setting up libapache-pom-java (33-2) ... 418s Setting up libavahi-common-data:ppc64el (0.8-16ubuntu2) ... 418s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 418s Setting up t1utils (1.41-4build3) ... 418s Setting up libquadmath0:ppc64el (15-20250404-0ubuntu1) ... 418s Setting up python3-cycler (0.12.1-1) ... 418s Setting up libtexlua53-5:ppc64el (2024.20240313.70630+ds-6) ... 418s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 418s Setting up fonts-dejavu-mono (2.37-8) ... 418s Setting up python3-kiwisolver (1.4.7-3build1) ... 418s Setting up libmpc3:ppc64el (1.3.1-1build2) ... 418s Setting up python3-numpy-dev:ppc64el (1:2.2.3+ds-5) ... 418s Setting up libidn12:ppc64el (1.43-1) ... 418s Setting up 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420s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 420s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 420s Setting up python3-sympy (1.13.3-5) ... 426s Setting up libice6:ppc64el (2:1.1.1-1) ... 426s Setting up flex (2.6.4-8.2build1) ... 426s Setting up liblapack3:ppc64el (3.12.1-2) ... 426s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 426s Setting up gettext (0.23.1-1) ... 426s Setting up libarpack2t64:ppc64el (3.9.1-4) ... 426s Setting up libamd3:ppc64el (1:7.8.3+dfsg-3) ... 426s Setting up libpdfbox-java (1:1.8.16-5) ... 426s Setting up libcolamd3:ppc64el (1:7.8.3+dfsg-3) ... 426s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 426s Setting up wise (2.4.1-25) ... 426s Setting up preview-latex-style (13.2-1) ... 426s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 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up python3-igraph (0.11.8+ds-1build1) ... 435s Setting up cpp (4:14.2.0-1ubuntu1) ... 435s Setting up g++-14 (14.2.0-19ubuntu2) ... 435s Setting up libcups2t64:ppc64el (2.4.12-0ubuntu1) ... 435s Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 435s Setting up python3-all-dev (3.13.3-1) ... 435s Setting up libgs10-common (10.05.0dfsg1-0ubuntu1) ... 435s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 435s Setting up libxmu6:ppc64el (2:1.1.3-3build2) ... 435s Setting up python3-cairo (1.27.0-2) ... 435s Setting up libtool (2.5.4-4) ... 435s Setting up blt (2.5.3+dfsg-8) ... 435s Setting up python3-tk:ppc64el (3.13.3-1) ... 435s Setting up libxaw7:ppc64el (2:1.0.16-1) ... 435s Setting up gcc (4:14.2.0-1ubuntu1) ... 435s Setting up dh-autoreconf (20) ... 435s Setting up python3-pil.imagetk:ppc64el (11.1.0-5build1) ... 435s Setting up python3-rlpycairo (0.3.0-3) ... 435s Setting up python3-reportlab (4.3.1-1) ... 436s Setting up g++ (4:14.2.0-1ubuntu1) ... 436s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 436s Setting up texlive-binaries (2024.20240313.70630+ds-6) ... 436s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 436s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 436s Setting up build-essential (12.12ubuntu1) ... 436s Setting up texlive-base (2024.20250309-1) ... 437s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 437s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 438s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 438s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 439s Setting up libgs10:ppc64el (10.05.0dfsg1-0ubuntu1) ... 439s Setting up debhelper (13.24.1ubuntu2) ... 439s Setting up ghostscript (10.05.0dfsg1-0ubuntu1) ... 439s Setting up texlive-latex-base (2024.20250309-1) ... 439s Setting up texlive-latex-recommended (2024.20250309-1) ... 439s Setting up texlive-pictures (2024.20250309-1) ... 439s Setting up texlive-fonts-recommended (2024.20250309-1) ... 439s Setting up texlive-latex-extra (2024.20250309-2) ... 439s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 439s Setting up libheif-plugin-aomdec:ppc64el (1.19.7-1) ... 439s Setting up libheif-plugin-libde265:ppc64el (1.19.7-1) ... 439s Setting up libheif1:ppc64el (1.19.7-1) ... 439s Setting up python3-fonttools (4.55.3-2build1) ... 440s Setting up libgd3:ppc64el (2.3.3-12ubuntu3) ... 440s Setting up libmagickcore-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ... 440s Setting up emboss-lib (6.6.0+dfsg-15ubuntu2) ... 440s Setting up python3-matplotlib (3.8.3-7build1) ... 441s Setting up libmagickwand-7.q16-10:ppc64el (8:7.1.1.43+dfsg1-1) ... 441s Setting up emboss (6.6.0+dfsg-15ubuntu2) ... 441s Setting up imagemagick-7.q16 (8:7.1.1.43+dfsg1-1) ... 441s update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode 441s update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode 441s update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode 441s update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode 441s update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode 441s update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode 441s update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode 441s update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode 441s update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode 441s update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode 441s update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode 441s update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode 441s update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode 441s update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode 441s update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode 441s update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode 441s update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode 441s update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode 441s update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode 441s update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode 441s update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode 441s update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode 441s update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode 441s update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist 441s update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode 441s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist 441s update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode 441s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist 441s update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode 441s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist 441s Setting up hevea (2.36-2) ... 441s Setting up imagemagick (8:7.1.1.43+dfsg1-1) ... 441s Processing triggers for install-info (7.1.1-1) ... 442s Processing triggers for libc-bin (2.41-6ubuntu1) ... 442s Processing triggers for man-db (2.13.0-1) ... 449s Processing triggers for shared-mime-info (2.4-5build1) ... 450s Processing triggers for sgml-base (1.31) ... 450s Setting up w3c-sgml-lib (1.3-3) ... 482s Setting up docutils-common (0.21.2+dfsg-2) ... 482s Setting up python3-biopython (1.85+dfsg-2build1) ... 483s Setting up python3-biopython-sql (1.85+dfsg-2build1) ... 484s Processing triggers for sgml-base (1.31) ... 484s Setting up python3-docutils (0.21.2+dfsg-2) ... 484s Setting up python3-sphinx (8.1.3-5) ... 485s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 485s Setting up python3-numpydoc (1.8.0-1) ... 485s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... 485s Processing triggers for tex-common (6.19) ... 486s Running updmap-sys. This may take some time... done. 486s Running mktexlsr /var/lib/texmf ... done. 486s Building format(s) --all. 571s This may take some time... done. 578s autopkgtest [16:07:38]: test full_suite: sh debian/tests/run-unit-test 578s autopkgtest [16:07:38]: test full_suite: [----------------------- 584s mkdir: created directory 'Bio' 584s mkdir: created directory 'Bio/Align' 584s mkdir: created directory 'Bio/Align/substitution_matrices' 584s mkdir: created directory 'Bio/Align/substitution_matrices/data/' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22' -> 'Bio/Align/substitution_matrices/data/BENNER22' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6' -> 'Bio/Align/substitution_matrices/data/BENNER6' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74' -> 'Bio/Align/substitution_matrices/data/BENNER74' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTN' -> 'Bio/Align/substitution_matrices/data/BLASTN' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTP' -> 'Bio/Align/substitution_matrices/data/BLASTP' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45' -> 'Bio/Align/substitution_matrices/data/BLOSUM45' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50' -> 'Bio/Align/substitution_matrices/data/BLOSUM50' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' -> 'Bio/Align/substitution_matrices/data/BLOSUM62' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80' -> 'Bio/Align/substitution_matrices/data/BLOSUM80' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90' -> 'Bio/Align/substitution_matrices/data/BLOSUM90' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF' -> 'Bio/Align/substitution_matrices/data/DAYHOFF' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG' -> 'Bio/Align/substitution_matrices/data/FENG' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC' -> 'Bio/Align/substitution_matrices/data/GENETIC' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992' -> 'Bio/Align/substitution_matrices/data/GONNET1992' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70' -> 'Bio/Align/substitution_matrices/data/HOXD70' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON' -> 'Bio/Align/substitution_matrices/data/JOHNSON' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES' -> 'Bio/Align/substitution_matrices/data/JONES' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN' -> 'Bio/Align/substitution_matrices/data/LEVIN' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN' -> 'Bio/Align/substitution_matrices/data/MCLACHLAN' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78' -> 'Bio/Align/substitution_matrices/data/MDM78' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MEGABLAST' -> 'Bio/Align/substitution_matrices/data/MEGABLAST' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4' -> 'Bio/Align/substitution_matrices/data/NUC.4.4' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250' -> 'Bio/Align/substitution_matrices/data/PAM250' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30' -> 'Bio/Align/substitution_matrices/data/PAM30' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70' -> 'Bio/Align/substitution_matrices/data/PAM70' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO' -> 'Bio/Align/substitution_matrices/data/RAO' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER' -> 'Bio/Align/substitution_matrices/data/RISLER' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER' -> 'Bio/Align/substitution_matrices/data/SCHNEIDER' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR' -> 'Bio/Align/substitution_matrices/data/STR' 584s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS' -> 'Bio/Align/substitution_matrices/data/TRANS' 585s test_Ace ... ok 585s test_Affy ... ok 588s test_AlignIO ... ok 588s test_AlignIO_ClustalIO ... ok 588s test_AlignIO_EmbossIO ... ok 588s test_AlignIO_FastaIO ... ok 588s test_AlignIO_MauveIO ... ok 588s test_AlignIO_PhylipIO ... ok 589s test_AlignIO_convert ... ok 589s test_AlignInfo ... ok 589s test_Align_Alignment ... ok 589s test_Align_a2m ... ok 589s test_Align_bed ... ok 589s test_Align_bigbed ... ok 590s test_Align_bigmaf ... ok 590s test_Align_bigpsl ... ok 590s test_Align_chain ... ok 591s test_Align_clustal ... ok 597s test_Align_codonalign ... ok 597s test_Align_emboss ... ok 597s test_Align_exonerate ... ok 598s test_Align_fasta ... ok 598s test_Align_hhr ... ok 599s test_Align_maf ... ok 599s test_Align_mauve ... ok 599s test_Align_msf ... ok 599s test_Align_nexus ... ok 599s test_Align_phylip ... ok 600s test_Align_psl ... ok 600s test_Align_sam ... ok 602s test_Align_stockholm ... ok 603s test_Align_tabular ... ok 603s test_Application ... ok 603s test_BioSQL_MySQLdb_online ... skipping. internet not available 603s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) 603s test_BioSQL_mysql_connector_online ... skipping. internet not available 603s test_BioSQL_psycopg2_online ... skipping. internet not available 608s test_BioSQL_sqlite3 ... ok 608s test_BioSQL_sqlite3_online ... skipping. internet not available 608s test_Blast_Record ... ok 609s test_Blast_parser ... ok 609s test_CAPS ... ok 609s test_Chi2 ... ok 610s test_ClustalOmega_tool ... ok 611s test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython. 611s test_Cluster ... ok 611s test_CodonTable ... ok 611s test_ColorSpiral ... ok 611s test_Compass ... ok 612s test_Consensus ... ok 614s test_Dialign_tool ... ok 614s test_EMBL_unittest ... ok 619s test_Emboss ... ok 619s test_EmbossPrimer ... ok 624s test_Entrez ... ok 624s test_Entrez_online ... skipping. internet not available 624s test_Entrez_parser ... ok 624s test_Enzyme ... ok 624s test_ExPASy ... skipping. internet not available 625s test_Fasttree_tool ... ok 625s test_File ... ok 625s test_GenBank ... /usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py:600: BiopythonWarning: Annotation 'Sequence Read Archive: SRX001885, SRX001121, SRX001531, SRX001530, SRX001529' too long 625s warnings.warn(f"Annotation {text!r} too long", BiopythonWarning) 625s ok 627s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' 630s ok 630s test_GraphicsChromosome ... ok 630s test_GraphicsDistribution ... ok 631s test_GraphicsGeneral ... ok 632s test_HMMCasino ... ok 632s test_HMMGeneral ... ok 632s test_KEGG ... ok 632s test_KEGG_online ... skipping. internet not available 637s test_KGML_graphics ... ok 637s test_KGML_graphics_online ... skipping. internet not available 638s test_KGML_nographics ... ok 638s test_KeyWList ... ok 638s test_LogisticRegression ... ok 640s test_MafIO_index ... ok 642s test_Mafft_tool ... ok 642s test_MarkovModel ... ok 642s test_Medline ... ok 642s test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. 643s test_NCBIXML ... Exception ignored in: 643s Traceback (most recent call last): 643s File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse 643s expat_parser.Parse(NULL, True) 643s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0 643s ok 646s test_NCBI_BLAST_tools ... ok 646s test_NCBI_qblast ... ok 646s test_NMR ... ok 646s test_NaiveBayes ... ok 646s test_Nexus ... ok 646s test_PAML_baseml ... ok 647s test_PAML_codeml ... ok 647s test_PAML_yn00 ... ok 652s test_PDB_CEAligner ... ok 654s test_PDB_DSSP ... ok 654s test_PDB_Dice ... ok 654s test_PDB_Disordered ... ok 655s test_PDB_Exposure ... ok 655s test_PDB_FragmentMapper ... ok 657s test_PDB_KDTree ... ok 657s test_PDB_MMCIF2Dict ... ok 657s test_PDB_MMCIFIO ... ok 659s test_PDB_MMCIFParser ... ok 659s test_PDB_NACCESS ... ok 659s test_PDB_PDBIO ... ok 659s test_PDB_PDBList ... skipping. internet not available 666s test_PDB_PDBMLParser ... ok 666s test_PDB_PDBParser ... ok 666s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path 666s test_PDB_Polypeptide ... ok 666s test_PDB_QCPSuperimposer ... ok 670s test_PDB_SASA ... ok 671s test_PDB_SMCRA ... ok 671s test_PDB_Selection ... ok 671s test_PDB_StructureAlignment ... ok 671s test_PDB_Superimposer ... ok 671s test_PDB_alphafold_db ... skipping. internet not available 675s test_PDB_binary_cif ... /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 7. 675s warnings.warn( 675s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 144. 675s warnings.warn( 675s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 153. 675s warnings.warn( 675s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 0. 675s warnings.warn( 675s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 0. 675s warnings.warn( 675s ok 685s test_PDB_internal_coords ... ok 685s test_PDB_parse_pdb_header ... ok 685s test_PDB_vectors ... ok 685s test_PQR ... ok 686s test_Pathway ... ok 686s test_Phd ... ok 686s test_Phylo ... ok 687s test_PhyloXML ... ok 687s test_Phylo_CDAO ... ok 687s test_Phylo_NeXML ... ok 689s test_Phylo_igraph ... ok 692s test_Phylo_matplotlib ... ok 692s test_Phylo_networkx ... ok 692s test_PopGen_GenePop_nodepend ... ok 694s test_Prank_tool ... ok 695s test_Probcons_tool ... ok 695s test_ProtParam ... ok 696s test_RCSBFormats ... ok 696s test_Restriction ... ok 697s test_SCOP_Astral ... ok 697s test_SCOP_Cla ... ok 697s test_SCOP_Des ... ok 698s test_SCOP_Dom ... ok 698s test_SCOP_Hie ... ok 698s test_SCOP_Raf ... ok 698s test_SCOP_Residues ... ok 699s test_SCOP_Scop ... ok 699s test_SVDSuperimposer ... ok 699s test_SearchIO_blast_tab ... ok 700s test_SearchIO_blast_tab_index ... ok 700s test_SearchIO_blast_xml ... ok 702s test_SearchIO_blast_xml_index ... ok 702s test_SearchIO_blat_psl ... ok 702s test_SearchIO_blat_psl_index ... ok 703s test_SearchIO_exonerate ... ok 703s test_SearchIO_exonerate_text_index ... ok 703s test_SearchIO_exonerate_vulgar_index ... ok 704s test_SearchIO_fasta_m10 ... ok 704s test_SearchIO_fasta_m10_index ... ok 704s test_SearchIO_hhsuite2_text ... ok 705s test_SearchIO_hmmer2_text ... ok 705s test_SearchIO_hmmer2_text_index ... ok 706s test_SearchIO_hmmer3_domtab ... ok 706s test_SearchIO_hmmer3_domtab_index ... ok 706s test_SearchIO_hmmer3_tab ... ok 706s test_SearchIO_hmmer3_tab_index ... ok 707s test_SearchIO_hmmer3_text ... ok 707s test_SearchIO_hmmer3_text_index ... ok 708s test_SearchIO_interproscan_xml ... ok 708s test_SearchIO_model ... ok 708s test_SearchIO_write ... ok 709s test_SeqFeature ... ok 727s test_SeqIO ... ok 727s test_SeqIO_AbiIO ... ok 728s test_SeqIO_FastaIO ... ok 728s test_SeqIO_Gck ... ok 728s test_SeqIO_Gfa ... ok 729s test_SeqIO_Insdc ... ok 729s test_SeqIO_NibIO ... ok 731s test_SeqIO_PdbIO ... ok 732s test_SeqIO_QualityIO ... ok 732s test_SeqIO_SeqXML ... ok 732s test_SeqIO_SffIO ... ok 733s test_SeqIO_SnapGene ... ok 734s test_SeqIO_TwoBitIO ... ok 735s test_SeqIO_UniprotIO ... ok 735s test_SeqIO_Xdna ... ok 736s test_SeqIO_features ... ok 755s test_SeqIO_index ... ok 755s test_SeqIO_online ... skipping. internet not available 756s test_SeqIO_write ... ok 756s test_SeqRecord ... ok 756s test_SeqUtils ... ok 758s test_Seq_objs ... ok 759s test_SwissProt ... ok 760s test_TCoffee_tool ... ok 761s test_TogoWS ... skipping. internet not available 761s test_TreeConstruction ... ok 762s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file 762s test_UniGene ... ok 762s test_UniProt ... skipping. internet not available 762s test_UniProt_GOA ... ok 763s test_align ... ok 763s test_align_substitution_matrices ... ok 766s test_bgzf ... ok 767s test_cellosaurus ... ok 774s test_codonalign ... ok 774s test_geo ... ok 775s test_kNN ... ok 775s test_motifs ... ok 776s test_motifs_online ... skipping. internet not available 776s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 776s warnings.warn( 776s ok 776s test_pairwise2_no_C ... ok 777s test_pairwise_aligner ... ok 777s test_pairwise_alignment_map ... ok 785s test_phenotype ... ok 786s test_phenotype_fit ... ok 786s test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. 786s test_prodoc ... ok 787s test_prosite ... ok 787s test_raxml_tool ... skipping. Install RAxML (binary raxmlHPC) if you want to test the Bio.Phylo.Applications wrapper. 787s test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython 787s test_seq ... ok 788s test_translate ... ok 788s ---------------------------------------------------------------------- 788s Ran 218 tests in 203.254 seconds 788s 788s Skipping any tests requiring internet access 788s Python version: 3.13.3 (main, Apr 8 2025, 19:55:40) [GCC 14.2.0] 788s Operating system: posix linux 789s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'> 789s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'> 789s autopkgtest [16:11:09]: test full_suite: -----------------------] 790s full_suite PASS 790s autopkgtest [16:11:10]: test full_suite: - - - - - - - - - - results - - - - - - - - - - 790s autopkgtest [16:11:10]: @@@@@@@@@@@@@@@@@@@@ summary 790s dependencies PASS 790s full_suite PASS 805s nova [W] Using flock in prodstack7-ppc64el 805s Creating nova instance adt-questing-ppc64el-python-biopython-20250503-155800-juju-7f2275-prod-proposed-migration-environment-15-1b1b04a7-4bd0-4065-8128-f132acf81d95 from image adt/ubuntu-questing-ppc64el-server-20250503.img (UUID d1ea0db3-9d36-4f68-88a9-f2901b9320e5)... 805s nova [W] Timed out waiting for 13b8187b-7907-43c0-b6fd-0c9f63e91918 to get deleted. 805s nova [W] Using flock in prodstack7-ppc64el 805s Creating nova instance adt-questing-ppc64el-python-biopython-20250503-155800-juju-7f2275-prod-proposed-migration-environment-15-1b1b04a7-4bd0-4065-8128-f132acf81d95 from image adt/ubuntu-questing-ppc64el-server-20250503.img (UUID d1ea0db3-9d36-4f68-88a9-f2901b9320e5)... 805s nova [W] Timed out waiting for 871b427a-0237-4449-be60-a4dbf7b6396d to get deleted.