0s autopkgtest [18:29:32]: starting date and time: 2025-05-02 18:29:32+0000
  0s autopkgtest [18:29:32]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [18:29:32]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pc1gl39w/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:nlme --apt-upgrade r-bioc-qusage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=nlme/3.1.168-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-4.secgroup --name adt-questing-i386-r-bioc-qusage-20250502-182932-juju-7f2275-prod-proposed-migration-environment-15-ce940f4f-ce90-44d7-99c6-22ae3791e924 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
 74s autopkgtest [18:30:46]: testbed dpkg architecture: amd64
 74s autopkgtest [18:30:46]: testbed apt version: 3.0.0
 74s autopkgtest [18:30:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 75s autopkgtest [18:30:47]: testbed release detected to be: None
 75s autopkgtest [18:30:47]: updating testbed package index (apt update)
 76s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
 76s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
 76s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
 76s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
 76s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.1 kB]
 76s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [170 kB]
 76s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2005 kB]
 76s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [232 kB]
 76s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [176 kB]
 76s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [696 kB]
 76s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1562 kB]
 77s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [15.1 kB]
 77s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [13.8 kB]
 77s Fetched 5024 kB in 1s (3960 kB/s)
 78s Reading package lists...
 79s autopkgtest [18:30:51]: upgrading testbed (apt dist-upgrade and autopurge)
 79s Reading package lists...
 79s Building dependency tree...
 79s Reading state information...
 80s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 80s Starting 2 pkgProblemResolver with broken count: 0
 80s Done
 81s Entering ResolveByKeep
 81s 
 81s Calculating upgrade...
 81s The following packages will be upgraded:
 81s   fwupd htop libftdi1-2 libfwupd3 libnpth0t64 libsensors-config libsensors5
 81s   liburcu8t64 mokutil nano usb.ids
 82s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 82s Need to get 6388 kB of archives.
 82s After this operation, 180 kB disk space will be freed.
 82s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libnpth0t64 amd64 1.8-3 [9294 B]
 82s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libsensors-config all 1:3.6.2-2 [6756 B]
 82s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libsensors5 amd64 1:3.6.2-2 [28.7 kB]
 82s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 liburcu8t64 amd64 0.15.2-2 [63.9 kB]
 82s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 nano amd64 8.4-1 [290 kB]
 82s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 usb.ids all 2025.04.01-1 [223 kB]
 82s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 fwupd amd64 2.0.8-3 [5396 kB]
 82s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libfwupd3 amd64 2.0.8-3 [136 kB]
 82s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 htop amd64 3.4.1-4 [175 kB]
 82s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libftdi1-2 amd64 1.5-10 [30.7 kB]
 82s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 mokutil amd64 0.7.2-1 [27.9 kB]
 83s Fetched 6388 kB in 1s (7829 kB/s)
 83s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
 83s Preparing to unpack .../libnpth0t64_1.8-3_amd64.deb ...
 83s Unpacking libnpth0t64:amd64 (1.8-3) over (1.8-2) ...
 83s Setting up libnpth0t64:amd64 (1.8-3) ...
 83s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
 83s Preparing to unpack .../0-libsensors-config_1%3a3.6.2-2_all.deb ...
 83s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ...
 83s Preparing to unpack .../1-libsensors5_1%3a3.6.2-2_amd64.deb ...
 83s Unpacking libsensors5:amd64 (1:3.6.2-2) over (1:3.6.0-10) ...
 83s Preparing to unpack .../2-liburcu8t64_0.15.2-2_amd64.deb ...
 83s Unpacking liburcu8t64:amd64 (0.15.2-2) over (0.15.1-1) ...
 83s Preparing to unpack .../3-nano_8.4-1_amd64.deb ...
 83s Unpacking nano (8.4-1) over (8.3-1) ...
 83s Preparing to unpack .../4-usb.ids_2025.04.01-1_all.deb ...
 83s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ...
 83s Preparing to unpack .../5-fwupd_2.0.8-3_amd64.deb ...
 84s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ...
 84s Preparing to unpack .../6-libfwupd3_2.0.8-3_amd64.deb ...
 84s Unpacking libfwupd3:amd64 (2.0.8-3) over (2.0.7-1) ...
 84s Preparing to unpack .../7-htop_3.4.1-4_amd64.deb ...
 84s Unpacking htop (3.4.1-4) over (3.4.0-2) ...
 84s Preparing to unpack .../8-libftdi1-2_1.5-10_amd64.deb ...
 84s Unpacking libftdi1-2:amd64 (1.5-10) over (1.5-8build1) ...
 84s Preparing to unpack .../9-mokutil_0.7.2-1_amd64.deb ...
 84s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ...
 84s Setting up liburcu8t64:amd64 (0.15.2-2) ...
 84s Setting up mokutil (0.7.2-1) ...
 84s Setting up htop (3.4.1-4) ...
 84s Setting up libsensors-config (1:3.6.2-2) ...
 84s Installing new version of config file /etc/sensors3.conf ...
 84s Setting up libfwupd3:amd64 (2.0.8-3) ...
 84s Setting up libftdi1-2:amd64 (1.5-10) ...
 84s Setting up usb.ids (2025.04.01-1) ...
 84s Setting up libsensors5:amd64 (1:3.6.2-2) ...
 84s Setting up nano (8.4-1) ...
 84s Installing new version of config file /etc/nanorc ...
 84s Setting up fwupd (2.0.8-3) ...
 85s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
 85s fwupd.service is a disabled or a static unit not running, not starting it.
 85s Processing triggers for man-db (2.13.0-1) ...
 86s Processing triggers for dbus (1.16.2-2ubuntu1) ...
 86s Processing triggers for install-info (7.1.1-1) ...
 87s Processing triggers for libc-bin (2.41-6ubuntu1) ...
 87s Reading package lists...
 87s Building dependency tree...
 87s Reading state information...
 88s Starting pkgProblemResolver with broken count: 0
 88s Starting 2 pkgProblemResolver with broken count: 0
 88s Done
 88s Solving dependencies...
 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 89s autopkgtest [18:31:01]: rebooting testbed after setup commands that affected boot
112s autopkgtest [18:31:24]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr  6 15:05:05 UTC 2025
115s autopkgtest [18:31:27]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-qusage
117s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (dsc) [2129 B]
117s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (tar) [10.1 MB]
117s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (diff) [3532 B]
118s gpgv: Signature made Sun Jan 12 02:53:53 2025 UTC
118s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
118s gpgv:                issuer "crusoe@debian.org"
118s gpgv: Can't check signature: No public key
118s dpkg-source: warning: cannot verify inline signature for ./r-bioc-qusage_2.40.0-2.dsc: no acceptable signature found
118s autopkgtest [18:31:30]: testing package r-bioc-qusage version 2.40.0-2
118s autopkgtest [18:31:30]: build not needed
121s autopkgtest [18:31:33]: test pkg-r-autopkgtest: preparing testbed
121s Reading package lists...
121s Building dependency tree...
121s Reading state information...
122s Starting pkgProblemResolver with broken count: 0
122s Starting 2 pkgProblemResolver with broken count: 0
122s Done
122s The following NEW packages will be installed:
122s   build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
122s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
122s   g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
122s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14
122s   gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
122s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
122s   libdeflate0 libfftw3-double3 libfontconfig1 libgcc-14-dev libgfortran-14-dev
122s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
122s   libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
122s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
122s   liblsan0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0
122s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
122s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
122s   libpng-dev libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev
122s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
122s   libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1
122s   libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
122s   r-bioc-biobase r-bioc-biocgenerics r-bioc-limma r-bioc-qusage r-cran-emmeans
122s   r-cran-estimability r-cran-fftw r-cran-lattice r-cran-mvtnorm r-cran-nlme
122s   r-cran-numderiv r-cran-statmod unzip x11-common xdg-utils zip zlib1g-dev
123s 0 upgraded, 112 newly installed, 0 to remove and 0 not upgraded.
123s Need to get 167 MB of archives.
123s After this operation, 479 MB of additional disk space will be used.
123s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB]
123s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
123s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB]
124s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B]
124s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
124s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
124s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15-20250404-0ubuntu1 [47.1 kB]
124s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB]
124s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB]
124s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB]
124s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB]
124s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB]
124s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB]
124s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB]
124s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB]
124s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB]
124s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB]
125s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB]
125s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
125s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
125s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB]
125s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [13.4 MB]
125s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14 amd64 14.2.0-19ubuntu2 [23.0 kB]
125s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
125s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
125s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B]
125s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
125s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
125s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
125s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB]
125s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB]
125s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB]
125s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB]
125s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran-14-dev amd64 14.2.0-19ubuntu2 [967 kB]
125s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [12.5 MB]
126s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14 amd64 14.2.0-19ubuntu2 [14.2 kB]
126s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B]
126s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B]
126s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB]
126s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
126s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 libblas-dev amd64 3.12.1-2 [338 kB]
126s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB]
126s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
126s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
126s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
126s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
126s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB]
126s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
126s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
126s Get:50 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB]
126s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB]
126s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
126s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
126s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB]
126s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
126s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB]
126s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
126s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB]
126s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
126s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
126s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
126s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
126s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB]
126s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
126s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB]
126s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
126s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
126s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB]
126s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB]
126s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB]
126s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
126s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
126s Get:73 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
126s Get:74 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB]
126s Get:75 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B]
126s Get:76 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-dev amd64 10.45-1 [908 kB]
126s Get:77 http://ftpmaster.internal/ubuntu questing/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
126s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
126s Get:79 http://ftpmaster.internal/ubuntu questing/main amd64 libpng-dev amd64 1.6.47-1.1 [298 kB]
126s Get:80 http://ftpmaster.internal/ubuntu questing/main amd64 libreadline-dev amd64 8.2-6 [184 kB]
126s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
127s Get:82 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
127s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
127s Get:84 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
127s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
127s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB]
127s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
127s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
127s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
127s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
127s Get:91 http://ftpmaster.internal/ubuntu questing/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
127s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
127s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
127s Get:94 http://ftpmaster.internal/ubuntu questing/universe amd64 r-base-core amd64 4.4.3-1 [28.9 MB]
128s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 liblzma-dev amd64 5.6.4-1ubuntu1 [189 kB]
128s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
128s Get:97 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
128s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
128s Get:99 http://ftpmaster.internal/ubuntu questing/universe amd64 r-base-dev all 4.4.3-1 [4176 B]
128s Get:100 http://ftpmaster.internal/ubuntu questing/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
128s Get:101 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
128s Get:102 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB]
128s Get:103 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB]
128s Get:104 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB]
129s Get:105 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
129s Get:106 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB]
129s Get:107 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-estimability all 1.5.1-1 [50.9 kB]
129s Get:108 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-numderiv all 2016.8-1.1-3 [115 kB]
129s Get:109 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mvtnorm amd64 1.3-3-1 [923 kB]
129s Get:110 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-emmeans all 1.10.7+dfsg-1 [1665 kB]
129s Get:111 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fftw amd64 1.0-9-1 [19.7 kB]
129s Get:112 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-qusage all 2.40.0-2 [10.2 MB]
130s Preconfiguring packages ...
130s Fetched 167 MB in 7s (24.0 MB/s)
130s Selecting previously unselected package libisl23:amd64.
130s (Reading database ... 
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130s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ...
130s Unpacking libisl23:amd64 (0.27-1) ...
130s Selecting previously unselected package libmpc3:amd64.
130s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ...
130s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
130s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
130s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
130s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
131s Selecting previously unselected package cpp-14.
131s Preparing to unpack .../003-cpp-14_14.2.0-19ubuntu2_amd64.deb ...
131s Unpacking cpp-14 (14.2.0-19ubuntu2) ...
131s Selecting previously unselected package cpp-x86-64-linux-gnu.
131s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
131s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
131s Selecting previously unselected package cpp.
131s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
131s Unpacking cpp (4:14.2.0-1ubuntu1) ...
131s Selecting previously unselected package libcc1-0:amd64.
131s Preparing to unpack .../006-libcc1-0_15-20250404-0ubuntu1_amd64.deb ...
131s Unpacking libcc1-0:amd64 (15-20250404-0ubuntu1) ...
131s Selecting previously unselected package libgomp1:amd64.
131s Preparing to unpack .../007-libgomp1_15-20250404-0ubuntu1_amd64.deb ...
131s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ...
131s Selecting previously unselected package libitm1:amd64.
131s Preparing to unpack .../008-libitm1_15-20250404-0ubuntu1_amd64.deb ...
131s Unpacking libitm1:amd64 (15-20250404-0ubuntu1) ...
131s Selecting previously unselected package libasan8:amd64.
131s Preparing to unpack .../009-libasan8_15-20250404-0ubuntu1_amd64.deb ...
131s Unpacking libasan8:amd64 (15-20250404-0ubuntu1) ...
131s Selecting previously unselected package liblsan0:amd64.
131s Preparing to unpack .../010-liblsan0_15-20250404-0ubuntu1_amd64.deb ...
131s Unpacking liblsan0:amd64 (15-20250404-0ubuntu1) ...
131s Selecting previously unselected package libtsan2:amd64.
131s Preparing to unpack .../011-libtsan2_15-20250404-0ubuntu1_amd64.deb ...
131s Unpacking libtsan2:amd64 (15-20250404-0ubuntu1) ...
131s Selecting previously unselected package libubsan1:amd64.
131s Preparing to unpack .../012-libubsan1_15-20250404-0ubuntu1_amd64.deb ...
131s Unpacking libubsan1:amd64 (15-20250404-0ubuntu1) ...
131s Selecting previously unselected package libhwasan0:amd64.
131s Preparing to unpack .../013-libhwasan0_15-20250404-0ubuntu1_amd64.deb ...
131s Unpacking libhwasan0:amd64 (15-20250404-0ubuntu1) ...
131s Selecting previously unselected package libquadmath0:amd64.
131s Preparing to unpack .../014-libquadmath0_15-20250404-0ubuntu1_amd64.deb ...
131s Unpacking libquadmath0:amd64 (15-20250404-0ubuntu1) ...
131s Selecting previously unselected package libgcc-14-dev:amd64.
131s Preparing to unpack .../015-libgcc-14-dev_14.2.0-19ubuntu2_amd64.deb ...
131s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ...
131s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
131s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
131s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
132s Selecting previously unselected package gcc-14.
132s Preparing to unpack .../017-gcc-14_14.2.0-19ubuntu2_amd64.deb ...
132s Unpacking gcc-14 (14.2.0-19ubuntu2) ...
132s Selecting previously unselected package gcc-x86-64-linux-gnu.
132s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
132s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
132s Selecting previously unselected package gcc.
132s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
132s Unpacking gcc (4:14.2.0-1ubuntu1) ...
132s Selecting previously unselected package libstdc++-14-dev:amd64.
132s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-19ubuntu2_amd64.deb ...
132s Unpacking libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ...
132s Selecting previously unselected package g++-14-x86-64-linux-gnu.
132s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
132s Unpacking g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
132s Selecting previously unselected package g++-14.
132s Preparing to unpack .../022-g++-14_14.2.0-19ubuntu2_amd64.deb ...
132s Unpacking g++-14 (14.2.0-19ubuntu2) ...
132s Selecting previously unselected package g++-x86-64-linux-gnu.
132s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
132s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
132s Selecting previously unselected package g++.
132s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
132s Unpacking g++ (4:14.2.0-1ubuntu1) ...
132s Selecting previously unselected package build-essential.
132s Preparing to unpack .../025-build-essential_12.12ubuntu1_amd64.deb ...
132s Unpacking build-essential (12.12ubuntu1) ...
133s Selecting previously unselected package dctrl-tools.
133s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ...
133s Unpacking dctrl-tools (2.24-3build3) ...
133s Selecting previously unselected package fonts-dejavu-mono.
133s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ...
133s Unpacking fonts-dejavu-mono (2.37-8) ...
133s Selecting previously unselected package fonts-dejavu-core.
133s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ...
133s Unpacking fonts-dejavu-core (2.37-8) ...
133s Selecting previously unselected package fontconfig-config.
133s Preparing to unpack .../029-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ...
133s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
133s Selecting previously unselected package libfontconfig1:amd64.
133s Preparing to unpack .../030-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ...
133s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ...
133s Selecting previously unselected package fontconfig.
133s Preparing to unpack .../031-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ...
133s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
133s Selecting previously unselected package libgfortran5:amd64.
133s Preparing to unpack .../032-libgfortran5_15-20250404-0ubuntu1_amd64.deb ...
133s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ...
133s Selecting previously unselected package libgfortran-14-dev:amd64.
133s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-19ubuntu2_amd64.deb ...
133s Unpacking libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ...
133s Selecting previously unselected package gfortran-14-x86-64-linux-gnu.
133s Preparing to unpack .../034-gfortran-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
133s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
133s Selecting previously unselected package gfortran-14.
133s Preparing to unpack .../035-gfortran-14_14.2.0-19ubuntu2_amd64.deb ...
133s Unpacking gfortran-14 (14.2.0-19ubuntu2) ...
133s Selecting previously unselected package gfortran-x86-64-linux-gnu.
133s Preparing to unpack .../036-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
133s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
134s Selecting previously unselected package gfortran.
134s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ...
134s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
134s Selecting previously unselected package icu-devtools.
134s Preparing to unpack .../038-icu-devtools_76.1-1ubuntu2_amd64.deb ...
134s Unpacking icu-devtools (76.1-1ubuntu2) ...
134s Selecting previously unselected package libblas3:amd64.
134s Preparing to unpack .../039-libblas3_3.12.1-2_amd64.deb ...
134s Unpacking libblas3:amd64 (3.12.1-2) ...
134s Selecting previously unselected package libblas-dev:amd64.
134s Preparing to unpack .../040-libblas-dev_3.12.1-2_amd64.deb ...
134s Unpacking libblas-dev:amd64 (3.12.1-2) ...
134s Selecting previously unselected package libbz2-dev:amd64.
134s Preparing to unpack .../041-libbz2-dev_1.0.8-6_amd64.deb ...
134s Unpacking libbz2-dev:amd64 (1.0.8-6) ...
134s Selecting previously unselected package libpixman-1-0:amd64.
134s Preparing to unpack .../042-libpixman-1-0_0.44.0-3_amd64.deb ...
134s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
134s Selecting previously unselected package libxcb-render0:amd64.
134s Preparing to unpack .../043-libxcb-render0_1.17.0-2_amd64.deb ...
134s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
134s Selecting previously unselected package libxcb-shm0:amd64.
134s Preparing to unpack .../044-libxcb-shm0_1.17.0-2_amd64.deb ...
134s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
134s Selecting previously unselected package libxrender1:amd64.
134s Preparing to unpack .../045-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
134s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
134s Selecting previously unselected package libcairo2:amd64.
134s Preparing to unpack .../046-libcairo2_1.18.4-1_amd64.deb ...
134s Unpacking libcairo2:amd64 (1.18.4-1) ...
134s Selecting previously unselected package libdatrie1:amd64.
134s Preparing to unpack .../047-libdatrie1_0.2.13-3build1_amd64.deb ...
134s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
134s Selecting previously unselected package libdeflate0:amd64.
134s Preparing to unpack .../048-libdeflate0_1.23-1_amd64.deb ...
134s Unpacking libdeflate0:amd64 (1.23-1) ...
134s Selecting previously unselected package libdeflate-dev:amd64.
134s Preparing to unpack .../049-libdeflate-dev_1.23-1_amd64.deb ...
134s Unpacking libdeflate-dev:amd64 (1.23-1) ...
134s Selecting previously unselected package libfftw3-double3:amd64.
134s Preparing to unpack .../050-libfftw3-double3_3.3.10-2fakesync1build1_amd64.deb ...
134s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ...
134s Selecting previously unselected package libgraphite2-3:amd64.
134s Preparing to unpack .../051-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
134s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
134s Selecting previously unselected package libharfbuzz0b:amd64.
134s Preparing to unpack .../052-libharfbuzz0b_10.2.0-1_amd64.deb ...
134s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
134s Selecting previously unselected package x11-common.
134s Preparing to unpack .../053-x11-common_1%3a7.7+23ubuntu4_all.deb ...
134s Unpacking x11-common (1:7.7+23ubuntu4) ...
134s Selecting previously unselected package libice6:amd64.
134s Preparing to unpack .../054-libice6_2%3a1.1.1-1_amd64.deb ...
134s Unpacking libice6:amd64 (2:1.1.1-1) ...
134s Selecting previously unselected package libicu-dev:amd64.
134s Preparing to unpack .../055-libicu-dev_76.1-1ubuntu2_amd64.deb ...
134s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ...
135s Selecting previously unselected package libjpeg-turbo8:amd64.
135s Preparing to unpack .../056-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
135s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
135s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
135s Preparing to unpack .../057-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ...
135s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ...
135s Selecting previously unselected package libjpeg8:amd64.
135s Preparing to unpack .../058-libjpeg8_8c-2ubuntu11_amd64.deb ...
135s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
135s Selecting previously unselected package libjpeg8-dev:amd64.
135s Preparing to unpack .../059-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
135s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
135s Selecting previously unselected package libjpeg-dev:amd64.
135s Preparing to unpack .../060-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
135s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
135s Selecting previously unselected package liblapack3:amd64.
135s Preparing to unpack .../061-liblapack3_3.12.1-2_amd64.deb ...
135s Unpacking liblapack3:amd64 (3.12.1-2) ...
135s Selecting previously unselected package liblapack-dev:amd64.
135s Preparing to unpack .../062-liblapack-dev_3.12.1-2_amd64.deb ...
135s Unpacking liblapack-dev:amd64 (3.12.1-2) ...
135s Selecting previously unselected package liblerc4:amd64.
135s Preparing to unpack .../063-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
135s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
135s Selecting previously unselected package libncurses-dev:amd64.
135s Preparing to unpack .../064-libncurses-dev_6.5+20250216-2_amd64.deb ...
135s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ...
135s Selecting previously unselected package libthai-data.
135s Preparing to unpack .../065-libthai-data_0.1.29-2build1_all.deb ...
135s Unpacking libthai-data (0.1.29-2build1) ...
135s Selecting previously unselected package libthai0:amd64.
135s Preparing to unpack .../066-libthai0_0.1.29-2build1_amd64.deb ...
135s Unpacking libthai0:amd64 (0.1.29-2build1) ...
135s Selecting previously unselected package libpango-1.0-0:amd64.
135s Preparing to unpack .../067-libpango-1.0-0_1.56.3-1_amd64.deb ...
135s Unpacking libpango-1.0-0:amd64 (1.56.3-1) ...
135s Selecting previously unselected package libpangoft2-1.0-0:amd64.
135s Preparing to unpack .../068-libpangoft2-1.0-0_1.56.3-1_amd64.deb ...
135s Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ...
135s Selecting previously unselected package libpangocairo-1.0-0:amd64.
135s Preparing to unpack .../069-libpangocairo-1.0-0_1.56.3-1_amd64.deb ...
135s Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ...
135s Selecting previously unselected package libpaper2:amd64.
135s Preparing to unpack .../070-libpaper2_2.2.5-0.3_amd64.deb ...
135s Unpacking libpaper2:amd64 (2.2.5-0.3) ...
135s Selecting previously unselected package libpaper-utils.
135s Preparing to unpack .../071-libpaper-utils_2.2.5-0.3_amd64.deb ...
135s Unpacking libpaper-utils (2.2.5-0.3) ...
135s Selecting previously unselected package libpcre2-16-0:amd64.
136s Preparing to unpack .../072-libpcre2-16-0_10.45-1_amd64.deb ...
136s Unpacking libpcre2-16-0:amd64 (10.45-1) ...
136s Selecting previously unselected package libpcre2-32-0:amd64.
136s Preparing to unpack .../073-libpcre2-32-0_10.45-1_amd64.deb ...
136s Unpacking libpcre2-32-0:amd64 (10.45-1) ...
136s Selecting previously unselected package libpcre2-posix3:amd64.
136s Preparing to unpack .../074-libpcre2-posix3_10.45-1_amd64.deb ...
136s Unpacking libpcre2-posix3:amd64 (10.45-1) ...
136s Selecting previously unselected package libpcre2-dev:amd64.
136s Preparing to unpack .../075-libpcre2-dev_10.45-1_amd64.deb ...
136s Unpacking libpcre2-dev:amd64 (10.45-1) ...
136s Selecting previously unselected package libpkgconf3:amd64.
136s Preparing to unpack .../076-libpkgconf3_1.8.1-4_amd64.deb ...
136s Unpacking libpkgconf3:amd64 (1.8.1-4) ...
136s Selecting previously unselected package zlib1g-dev:amd64.
136s Preparing to unpack .../077-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ...
136s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
136s Selecting previously unselected package libpng-dev:amd64.
136s Preparing to unpack .../078-libpng-dev_1.6.47-1.1_amd64.deb ...
136s Unpacking libpng-dev:amd64 (1.6.47-1.1) ...
136s Selecting previously unselected package libreadline-dev:amd64.
136s Preparing to unpack .../079-libreadline-dev_8.2-6_amd64.deb ...
136s Unpacking libreadline-dev:amd64 (8.2-6) ...
136s Selecting previously unselected package libsharpyuv0:amd64.
136s Preparing to unpack .../080-libsharpyuv0_1.5.0-0.1_amd64.deb ...
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138s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
138s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
138s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
138s Setting up libncurses-dev:amd64 (6.5+20250216-2) ...
138s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
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138s Setting up libdatrie1:amd64 (0.2.13-3build1) ...
138s Setting up libxcb-render0:amd64 (1.17.0-2) ...
138s Setting up unzip (6.0-28ubuntu6) ...
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138s Setting up libdeflate0:amd64 (1.23-1) ...
138s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
138s Setting up libreadline-dev:amd64 (8.2-6) ...
138s Setting up libgomp1:amd64 (15-20250404-0ubuntu1) ...
138s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
138s Setting up libpcre2-16-0:amd64 (10.45-1) ...
138s Setting up zip (3.0-14ubuntu2) ...
138s Setting up libpcre2-32-0:amd64 (10.45-1) ...
138s Setting up libblas3:amd64 (3.12.1-2) ...
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138s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ...
138s Setting up libpkgconf3:amd64 (1.8.1-4) ...
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138s Setting up libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ...
138s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ...
138s Setting up libwebp7:amd64 (1.5.0-0.1) ...
138s Setting up liblzma-dev:amd64 (5.6.4-1ubuntu1) ...
138s Setting up libubsan1:amd64 (15-20250404-0ubuntu1) ...
138s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
138s Setting up libpcre2-posix3:amd64 (10.45-1) ...
138s Setting up libhwasan0:amd64 (15-20250404-0ubuntu1) ...
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138s Setting up libisl23:amd64 (0.27-1) ...
138s Setting up libdeflate-dev:amd64 (1.23-1) ...
138s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ...
138s Setting up xdg-utils (1.2.1-2ubuntu1) ...
138s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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138s Setting up libblas-dev:amd64 (3.12.1-2) ...
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138s Setting up dctrl-tools (2.24-3build3) ...
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138s Setting up libbz2-dev:amd64 (1.0.8-6) ...
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138s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ...
138s Setting up liblapack3:amd64 (3.12.1-2) ...
138s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
138s Setting up libpcre2-dev:amd64 (10.45-1) ...
138s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ...
139s Setting up libpng-dev:amd64 (1.6.47-1.1) ...
139s Setting up libpaper-utils (2.2.5-0.3) ...
139s Setting up pkgconf:amd64 (1.8.1-4) ...
139s Setting up libthai0:amd64 (0.1.29-2build1) ...
139s Setting up liblapack-dev:amd64 (3.12.1-2) ...
139s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
139s Setting up cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
139s Setting up cpp-14 (14.2.0-19ubuntu2) ...
139s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ...
139s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ...
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139s Setting up libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ...
139s Setting up libsm6:amd64 (2:1.2.4-1) ...
139s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
139s Setting up libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ...
139s Setting up fontconfig (2.15.0-2.2ubuntu1) ...
141s Regenerating fonts cache... done.
141s Setting up libxft2:amd64 (2.3.6-1build1) ...
141s Setting up libtk8.6:amd64 (8.6.16-1) ...
141s Setting up libpango-1.0-0:amd64 (1.56.3-1) ...
141s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
141s Setting up libcairo2:amd64 (1.18.4-1) ...
141s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
141s Setting up cpp (4:14.2.0-1ubuntu1) ...
141s Setting up gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
141s Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ...
141s Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ...
141s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
141s Setting up gcc-14 (14.2.0-19ubuntu2) ...
141s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
141s Setting up r-base-core (4.4.3-1) ...
141s Creating config file /etc/R/Renviron with new version
141s Setting up r-cran-lattice (0.22-6-1) ...
141s Setting up r-cran-nlme (3.1.168-1) ...
141s Setting up g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
141s Setting up r-cran-statmod (1.5.0-1) ...
141s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
141s Setting up r-cran-fftw (1.0-9-1) ...
141s Setting up g++-14 (14.2.0-19ubuntu2) ...
141s Setting up gfortran-14 (14.2.0-19ubuntu2) ...
141s Setting up r-cran-numderiv (2016.8-1.1-3) ...
141s Setting up r-cran-estimability (1.5.1-1) ...
141s Setting up r-bioc-biocgenerics (0.52.0-2) ...
141s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
141s Setting up gcc (4:14.2.0-1ubuntu1) ...
141s Setting up r-bioc-biobase (2.66.0-2) ...
141s Setting up r-cran-mvtnorm (1.3-3-1) ...
141s Setting up r-bioc-limma (3.62.2+dfsg-1) ...
141s Setting up g++ (4:14.2.0-1ubuntu1) ...
141s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
141s Setting up build-essential (12.12ubuntu1) ...
141s Setting up gfortran (4:14.2.0-1ubuntu1) ...
141s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
141s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
141s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
141s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
141s Setting up r-cran-emmeans (1.10.7+dfsg-1) ...
141s Setting up r-base-dev (4.4.3-1) ...
141s Setting up r-bioc-qusage (2.40.0-2) ...
141s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
141s Processing triggers for libc-bin (2.41-6ubuntu1) ...
141s Processing triggers for man-db (2.13.0-1) ...
143s Processing triggers for install-info (7.1.1-1) ...
145s autopkgtest [18:31:57]: testbed environment configured for cross-architecture building
145s autopkgtest [18:31:57]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
145s autopkgtest [18:31:57]: test pkg-r-autopkgtest: [-----------------------
145s Test: Try to load the R library qusage
145s 
145s R version 4.4.3 (2025-02-28) -- "Trophy Case"
145s Copyright (C) 2025 The R Foundation for Statistical Computing
145s Platform: x86_64-pc-linux-gnu
145s 
145s R is free software and comes with ABSOLUTELY NO WARRANTY.
145s You are welcome to redistribute it under certain conditions.
145s Type 'license()' or 'licence()' for distribution details.
145s 
145s R is a collaborative project with many contributors.
145s Type 'contributors()' for more information and
145s 'citation()' on how to cite R or R packages in publications.
145s 
145s Type 'demo()' for some demos, 'help()' for on-line help, or
145s 'help.start()' for an HTML browser interface to help.
145s Type 'q()' to quit R.
145s 
145s > library('qusage')
145s Loading required package: limma
146s > 
146s > 
146s Other tests are currently unsupported!
146s They will be progressively added.
146s autopkgtest [18:31:58]: test pkg-r-autopkgtest: -----------------------]
147s pkg-r-autopkgtest    PASS
147s autopkgtest [18:31:59]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
147s autopkgtest [18:31:59]: @@@@@@@@@@@@@@@@@@@@ summary
147s pkg-r-autopkgtest    PASS
177s nova [W] Skipping flock for amd64
177s Creating nova instance adt-questing-i386-r-bioc-qusage-20250502-182932-juju-7f2275-prod-proposed-migration-environment-15-ce940f4f-ce90-44d7-99c6-22ae3791e924 from image adt/ubuntu-questing-amd64-server-20250502.img (UUID 9956ea44-e870-4bd8-8ad1-dc5f8a09f1f9)...
177s nova [W] Timed out waiting for 0c410d92-e39e-4582-bf1c-2a0005dd9e18 to get deleted.