0s autopkgtest [23:45:24]: starting date and time: 2025-05-02 23:45:24+0000 0s autopkgtest [23:45:24]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [23:45:24]: host juju-7f2275-prod-proposed-migration-environment-23; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qzp0xa4k/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-keggrest --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-23@bos03-9.secgroup --name adt-questing-i386-r-bioc-keggrest-20250502-234524-juju-7f2275-prod-proposed-migration-environment-23-23012911-5b33-472f-be15-8f9f0d698e97 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-23 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 48s autopkgtest [23:46:12]: testbed dpkg architecture: amd64 49s autopkgtest [23:46:13]: testbed apt version: 3.0.0 49s autopkgtest [23:46:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s autopkgtest [23:46:13]: testbed release detected to be: None 50s autopkgtest [23:46:14]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB] 51s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1947 kB] 51s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.1 kB] 51s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [233 kB] 51s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [178 kB] 51s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [671 kB] 51s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1515 kB] 51s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [13.9 kB] 51s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [15.1 kB] 51s Fetched 4894 kB in 1s (4065 kB/s) 52s Reading package lists... 53s autopkgtest [23:46:17]: upgrading testbed (apt dist-upgrade and autopurge) 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 54s Starting 2 pkgProblemResolver with broken count: 0 54s Done 54s Entering ResolveByKeep 55s 55s Calculating upgrade... 55s The following packages will be upgraded: 55s ed fwupd htop libftdi1-2 libfwupd3 libnpth0t64 libsensors-config libsensors5 55s liburcu8t64 mokutil nano usb.ids 55s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 6445 kB of archives. 55s After this operation, 193 kB disk space will be freed. 55s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libnpth0t64 amd64 1.8-3 [9294 B] 55s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 ed amd64 1.21.1-1 [57.2 kB] 55s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libsensors-config all 1:3.6.2-2 [6756 B] 55s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libsensors5 amd64 1:3.6.2-2 [28.7 kB] 55s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 liburcu8t64 amd64 0.15.2-2 [63.9 kB] 55s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 nano amd64 8.4-1 [290 kB] 55s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 usb.ids all 2025.04.01-1 [223 kB] 55s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 fwupd amd64 2.0.8-3 [5396 kB] 56s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libfwupd3 amd64 2.0.8-3 [136 kB] 56s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 htop amd64 3.4.1-4 [175 kB] 56s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 libftdi1-2 amd64 1.5-10 [30.7 kB] 56s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 mokutil amd64 0.7.2-1 [27.9 kB] 56s Fetched 6445 kB in 1s (7995 kB/s) 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 56s Preparing to unpack .../libnpth0t64_1.8-3_amd64.deb ... 56s Unpacking libnpth0t64:amd64 (1.8-3) over (1.8-2) ... 56s Setting up libnpth0t64:amd64 (1.8-3) ... 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 56s Preparing to unpack .../00-ed_1.21.1-1_amd64.deb ... 56s Unpacking ed (1.21.1-1) over (1.21-1) ... 56s Preparing to unpack .../01-libsensors-config_1%3a3.6.2-2_all.deb ... 56s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 56s Preparing to unpack .../02-libsensors5_1%3a3.6.2-2_amd64.deb ... 56s Unpacking libsensors5:amd64 (1:3.6.2-2) over (1:3.6.0-10) ... 56s Preparing to unpack .../03-liburcu8t64_0.15.2-2_amd64.deb ... 56s Unpacking liburcu8t64:amd64 (0.15.2-2) over (0.15.1-1) ... 57s Preparing to unpack .../04-nano_8.4-1_amd64.deb ... 57s Unpacking nano (8.4-1) over (8.3-1) ... 57s Preparing to unpack .../05-usb.ids_2025.04.01-1_all.deb ... 57s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 57s Preparing to unpack .../06-fwupd_2.0.8-3_amd64.deb ... 57s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 57s Preparing to unpack .../07-libfwupd3_2.0.8-3_amd64.deb ... 57s Unpacking libfwupd3:amd64 (2.0.8-3) over (2.0.7-1) ... 57s Preparing to unpack .../08-htop_3.4.1-4_amd64.deb ... 57s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 57s Preparing to unpack .../09-libftdi1-2_1.5-10_amd64.deb ... 57s Unpacking libftdi1-2:amd64 (1.5-10) over (1.5-8build1) ... 57s Preparing to unpack .../10-mokutil_0.7.2-1_amd64.deb ... 57s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ... 57s Setting up liburcu8t64:amd64 (0.15.2-2) ... 57s Setting up mokutil (0.7.2-1) ... 57s Setting up htop (3.4.1-4) ... 57s Setting up libsensors-config (1:3.6.2-2) ... 57s Installing new version of config file /etc/sensors3.conf ... 57s Setting up libfwupd3:amd64 (2.0.8-3) ... 57s Setting up libftdi1-2:amd64 (1.5-10) ... 57s Setting up ed (1.21.1-1) ... 57s Setting up usb.ids (2025.04.01-1) ... 57s Setting up libsensors5:amd64 (1:3.6.2-2) ... 57s Setting up nano (8.4-1) ... 57s Installing new version of config file /etc/nanorc ... 57s Setting up fwupd (2.0.8-3) ... 58s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 58s fwupd.service is a disabled or a static unit not running, not starting it. 58s Processing triggers for man-db (2.13.0-1) ... 59s Processing triggers for dbus (1.16.2-2ubuntu1) ... 59s Processing triggers for install-info (7.1.1-1) ... 59s Processing triggers for libc-bin (2.41-6ubuntu1) ... 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Starting pkgProblemResolver with broken count: 0 61s Starting 2 pkgProblemResolver with broken count: 0 61s Done 61s Solving dependencies... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s autopkgtest [23:46:25]: rebooting testbed after setup commands that affected boot 84s autopkgtest [23:46:48]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 87s autopkgtest [23:46:51]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-keggrest 89s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-keggrest 1.46.0+dfsg-2 (dsc) [2147 B] 89s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-keggrest 1.46.0+dfsg-2 (tar) [16.4 kB] 89s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-keggrest 1.46.0+dfsg-2 (diff) [5980 B] 89s gpgv: Signature made Sun Jan 12 19:16:45 2025 UTC 89s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 89s gpgv: issuer "crusoe@debian.org" 89s gpgv: Can't check signature: No public key 89s dpkg-source: warning: cannot verify inline signature for ./r-bioc-keggrest_1.46.0+dfsg-2.dsc: no acceptable signature found 89s autopkgtest [23:46:53]: testing package r-bioc-keggrest version 1.46.0+dfsg-2 89s autopkgtest [23:46:53]: build not needed 90s autopkgtest [23:46:54]: test pkg-r-autopkgtest: preparing testbed 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Starting pkgProblemResolver with broken count: 13 91s Starting 2 pkgProblemResolver with broken count: 13 91s Investigating (0) r-cran-shiny:amd64 < none -> 1.10.0+dfsg-2 @un puN Ib > 91s Broken r-cran-shiny:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10) 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-shiny:amd64 56 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-shiny:amd64 56 91s Investigating (0) r-cran-sass:amd64 < none -> 0.4.9+dfsg-1 @un puN Ib > 91s Broken r-cran-sass:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10) 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-sass:amd64 54 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-sass:amd64 54 91s Investigating (0) r-cran-bslib:amd64 < none -> 0.9.0+dfsg-1syncable1 @un puN Ib > 91s Broken r-cran-bslib:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-bslib:amd64 51 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-bslib:amd64 51 91s Investigating (0) r-cran-htmltools:amd64 < none -> 0.5.8.1-1 @un puN Ib > 91s Broken r-cran-htmltools:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.0) 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-htmltools:amd64 41 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-htmltools:amd64 41 91s Investigating (0) r-cran-fontawesome:amd64 < none -> 0.5.3-1 @un puN Ib > 91s Broken r-cran-fontawesome:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.6) 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-fontawesome:amd64 29 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-fontawesome:amd64 29 91s Investigating (0) r-cran-later:amd64 < none -> 1.4.1+dfsg-1 @un puN Ib > 91s Broken r-cran-later:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-later:amd64 18 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-later:amd64 18 91s Investigating (0) r-cran-cachem:amd64 < none -> 1.1.0-1 @un puN Ib > 91s Broken r-cran-cachem:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-cachem:amd64 10 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-cachem:amd64 10 91s Investigating (0) r-cran-lifecycle:amd64 < none -> 1.0.4+dfsg-1 @un puN Ib > 91s Broken r-cran-lifecycle:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-lifecycle:amd64 9 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-lifecycle:amd64 9 91s Investigating (0) r-cran-promises:amd64 < none -> 1.3.2+dfsg-1 @un puN Ib > 91s Broken r-cran-promises:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-promises:amd64 8 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-promises:amd64 8 91s Investigating (0) r-cran-memoise:amd64 < none -> 2.0.1-1 @un puN Ib > 91s Broken r-cran-memoise:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10) 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-memoise:amd64 3 91s Considering r-cran-rlang:amd64 8 as a solution to r-cran-memoise:amd64 3 91s Investigating (0) r-bioc-xvector:amd64 < none -> 0.46.0-2 @un puN Ib > 91s Broken r-bioc-xvector:amd64 Depends on r-bioc-iranges:amd64 < none @un pH > (>= 2.23.9) 91s Considering r-bioc-iranges:amd64 0 as a solution to r-bioc-xvector:amd64 0 91s Considering r-bioc-iranges:amd64 0 as a solution to r-bioc-xvector:amd64 0 91s Investigating (0) r-bioc-genomeinfodb:amd64 < none -> 1.42.3+dfsg-1 @un puN Ib > 91s Broken r-bioc-genomeinfodb:amd64 Depends on r-bioc-iranges:amd64 < none @un pH > (>= 2.13.12) 91s Considering r-bioc-iranges:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 0 91s Considering r-bioc-iranges:amd64 0 as a solution to r-bioc-genomeinfodb:amd64 0 91s Investigating (0) r-bioc-biostrings:amd64 < none -> 2.74.1+dfsg-2 @un puN Ib > 91s Broken r-bioc-biostrings:amd64 Depends on r-bioc-iranges:amd64 < none @un pH > (>= 2.31.2) 91s Considering r-bioc-iranges:amd64 0 as a solution to r-bioc-biostrings:amd64 0 91s Considering r-bioc-iranges:amd64 0 as a solution to r-bioc-biostrings:amd64 0 91s Done 91s Some packages could not be installed. This may mean that you have 91s requested an impossible situation or if you are using the unstable 91s distribution that some required packages have not yet been created 91s or been moved out of Incoming. 91s The following information may help to resolve the situation: 91s 91s The following packages have unmet dependencies: 91s r-bioc-biostrings : Depends: r-bioc-iranges (>= 2.31.2) but it is not installable 91s r-bioc-genomeinfodb : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable 91s r-bioc-xvector : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable 91s r-cran-bslib : Depends: r-cran-rlang but it is not installable 91s r-cran-cachem : Depends: r-cran-rlang but it is not installable 91s r-cran-fontawesome : Depends: r-cran-rlang (>= 1.0.6) but it is not installable 91s r-cran-htmltools : Depends: r-cran-rlang (>= 1.0.0) but it is not installable 91s r-cran-later : Depends: r-cran-rlang but it is not installable 91s r-cran-lifecycle : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s r-cran-memoise : Depends: r-cran-rlang (>= 0.4.10) but it is not installable 91s r-cran-promises : Depends: r-cran-rlang but it is not installable 91s r-cran-sass : Depends: r-cran-rlang (>= 0.4.10) but it is not installable 91s r-cran-shiny : Depends: r-cran-rlang (>= 0.4.10) but it is not installable 91s E: Unable to correct problems, you have held broken packages. 91s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Starting pkgProblemResolver with broken count: 0 93s Starting 2 pkgProblemResolver with broken count: 0 93s Done 93s The following NEW packages will be installed: 93s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 93s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 93s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 93s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 93s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 93s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 93s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 93s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 93s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 93s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 93s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 93s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 93s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 93s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 93s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 93s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 93s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 93s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 93s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 93s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 93s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 93s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 93s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 93s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 93s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev 93s libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 93s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 93s r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocstyle 93s r-bioc-biocversion r-bioc-biostrings r-bioc-genomeinfodb 93s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors 93s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass 93s r-cran-base64enc r-cran-biocmanager r-cran-bookdown r-cran-bslib 93s r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon r-cran-curl 93s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 93s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 93s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle 93s r-cran-littler r-cran-magrittr r-cran-markdown r-cran-memoise r-cran-mime 93s r-cran-openssl r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 93s r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-runit 93s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-sys r-cran-tinytex 93s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common 93s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 93s x11-common xdg-utils zip zlib1g-dev 93s The following packages will be upgraded: 93s gcc-14-base gcc-15-base libatomic1 libgcc-s1 libstdc++6 libtirpc-common 93s libtirpc3t64 libzstd1 zstd 93s 9 upgraded, 212 newly installed, 0 to remove and 108 not upgraded. 93s Need to get 367 MB of archives. 93s After this operation, 1088 MB of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gcc-15-base amd64 15.1.0-1ubuntu1 [54.5 kB] 94s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgcc-s1 amd64 15.1.0-1ubuntu1 [78.1 kB] 94s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libatomic1 amd64 15.1.0-1ubuntu1 [10.5 kB] 94s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libstdc++6 amd64 15.1.0-1ubuntu1 [814 kB] 94s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [308 kB] 95s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gcc-14-base amd64 14.2.0-22ubuntu1 [55.1 kB] 95s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libtirpc-common all 1.3.6+ds-1 [8198 B] 95s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [82.5 kB] 95s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB] 95s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 95s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-22ubuntu1 [11.9 MB] 97s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 cpp-14 amd64 14.2.0-22ubuntu1 [1030 B] 97s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 97s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 97s Get:15 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libcc1-0 amd64 15.1.0-1ubuntu1 [47.1 kB] 97s Get:16 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgomp1 amd64 15.1.0-1ubuntu1 [151 kB] 97s Get:17 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libitm1 amd64 15.1.0-1ubuntu1 [29.5 kB] 97s Get:18 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libasan8 amd64 15.1.0-1ubuntu1 [3072 kB] 97s Get:19 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 liblsan0 amd64 15.1.0-1ubuntu1 [1361 kB] 98s Get:20 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libtsan2 amd64 15.1.0-1ubuntu1 [2760 kB] 98s Get:21 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libubsan1 amd64 15.1.0-1ubuntu1 [1211 kB] 98s Get:22 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libhwasan0 amd64 15.1.0-1ubuntu1 [1686 kB] 98s Get:23 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libquadmath0 amd64 15.1.0-1ubuntu1 [153 kB] 98s Get:24 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgcc-14-dev amd64 14.2.0-22ubuntu1 [2815 kB] 98s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-22ubuntu1 [23.4 MB] 101s Get:26 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gcc-14 amd64 14.2.0-22ubuntu1 [547 kB] 101s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 101s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 101s Get:29 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libstdc++-14-dev amd64 14.2.0-22ubuntu1 [2826 kB] 101s Get:30 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-22ubuntu1 [13.4 MB] 103s Get:31 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 g++-14 amd64 14.2.0-22ubuntu1 [24.0 kB] 103s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 103s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 103s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 103s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 103s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 103s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 103s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 103s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 103s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB] 103s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 103s Get:42 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-4 [119 kB] 103s Get:43 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 103s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 103s Get:45 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgfortran5 amd64 15.1.0-1ubuntu1 [924 kB] 104s Get:46 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgfortran-14-dev amd64 14.2.0-22ubuntu1 [967 kB] 104s Get:47 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-22ubuntu1 [12.5 MB] 105s Get:48 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gfortran-14 amd64 14.2.0-22ubuntu1 [14.4 kB] 105s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 105s Get:50 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 105s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 105s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 javascript-common all 12 [5216 B] 105s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 105s Get:54 http://ftpmaster.internal/ubuntu questing/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 105s Get:55 http://ftpmaster.internal/ubuntu questing/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 105s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 105s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 105s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 105s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 105s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 105s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 105s Get:62 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 105s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 105s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 105s Get:65 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 105s Get:66 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB] 105s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 105s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 105s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 105s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 105s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 106s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 106s Get:73 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 106s Get:74 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 106s Get:75 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 106s Get:76 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 106s Get:77 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 libjs-bootstrap all 3.4.1+dfsg-4 [129 kB] 106s Get:78 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 106s Get:79 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 106s Get:80 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 106s Get:81 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 106s Get:82 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 107s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 107s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 107s Get:85 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 107s Get:86 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 107s Get:87 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 107s Get:88 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 107s Get:89 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 107s Get:90 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 107s Get:91 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 107s Get:92 http://ftpmaster.internal/ubuntu questing/universe amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 107s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 107s Get:94 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 108s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 108s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 108s Get:97 http://ftpmaster.internal/ubuntu questing/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 108s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 108s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 108s Get:100 http://ftpmaster.internal/ubuntu questing/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 108s Get:101 http://ftpmaster.internal/ubuntu questing/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB] 108s Get:102 http://ftpmaster.internal/ubuntu questing/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB] 108s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB] 108s Get:104 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 108s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 108s Get:106 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 108s Get:107 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 108s Get:108 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 108s Get:109 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 108s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 108s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 108s Get:112 http://ftpmaster.internal/ubuntu questing/main amd64 libpng-dev amd64 1.6.47-1.1 [298 kB] 108s Get:113 http://ftpmaster.internal/ubuntu questing/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 108s Get:114 http://ftpmaster.internal/ubuntu questing/universe amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 108s Get:115 http://ftpmaster.internal/ubuntu questing/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 109s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 109s Get:117 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 109s Get:118 http://ftpmaster.internal/ubuntu questing/universe amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 109s Get:119 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 109s Get:120 http://ftpmaster.internal/ubuntu questing/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 109s Get:121 http://ftpmaster.internal/ubuntu questing/universe amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 109s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 109s Get:123 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 109s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 109s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 109s Get:126 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 109s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 109s Get:128 http://ftpmaster.internal/ubuntu questing/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 109s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 109s Get:130 http://ftpmaster.internal/ubuntu questing/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 109s Get:131 http://ftpmaster.internal/ubuntu questing/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 109s Get:132 http://ftpmaster.internal/ubuntu questing/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 109s Get:133 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [377 kB] 109s Get:134 http://ftpmaster.internal/ubuntu questing/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 109s Get:135 http://ftpmaster.internal/ubuntu questing/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 109s Get:136 http://ftpmaster.internal/ubuntu questing/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 109s Get:137 http://ftpmaster.internal/ubuntu questing/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 109s Get:138 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-core amd64 4.5.0-3 [28.9 MB] 110s Get:139 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-littler amd64 0.3.21-1 [99.3 kB] 110s Get:140 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 littler all 0.3.21-1 [2584 B] 110s Get:141 http://ftpmaster.internal/ubuntu questing/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 110s Get:142 http://ftpmaster.internal/ubuntu questing/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 110s Get:143 http://ftpmaster.internal/ubuntu questing/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 110s Get:144 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 110s Get:145 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 111s Get:146 http://ftpmaster.internal/ubuntu questing/main amd64 liblzma-dev amd64 5.6.4-1ubuntu1 [189 kB] 111s Get:147 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 111s Get:148 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 111s Get:149 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 111s Get:150 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-dev all 4.5.0-3 [4188 B] 111s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 111s Get:152 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 111s Get:153 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 111s Get:154 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 111s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 111s Get:156 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 111s Get:157 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 111s Get:158 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 111s Get:159 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 111s Get:160 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 111s Get:161 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 111s Get:162 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 112s Get:163 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-knitr all 1.50+dfsg-1 [840 kB] 112s Get:164 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 112s Get:165 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 112s Get:166 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 112s Get:167 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 112s Get:168 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 112s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 112s Get:170 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 112s Get:171 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 112s Get:172 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 112s Get:173 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 112s Get:174 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 112s Get:175 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 112s Get:176 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-bslib all 0.9.0+dfsg-3 [4562 kB] 112s Get:177 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 112s Get:178 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 112s Get:179 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 112s Get:180 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 112s Get:181 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 112s Get:182 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 112s Get:183 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 112s Get:184 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 112s Get:185 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 112s Get:186 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 112s Get:187 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 112s Get:188 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 112s Get:189 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 112s Get:190 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 112s Get:191 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 112s Get:192 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 112s Get:193 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 112s Get:194 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 112s Get:195 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 112s Get:196 http://ftpmaster.internal/ubuntu questing/universe amd64 tex-common all 6.19 [29.8 kB] 112s Get:197 http://ftpmaster.internal/ubuntu questing/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 112s Get:198 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 113s Get:199 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-base all 2024.20250309-1 [22.7 MB] 113s Get:200 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-latex-base all 2024.20250309-1 [1276 kB] 113s Get:201 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-bibtex-extra all 2024.20250309-2 [79.3 MB] 117s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 117s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 117s Get:204 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 117s Get:205 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB] 118s Get:206 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 118s Get:207 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 118s Get:208 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 118s Get:209 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 118s Get:210 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 118s Get:211 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 118s Get:212 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 118s Get:213 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 118s Get:214 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 118s Get:215 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 118s Get:216 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 119s Get:217 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 119s Get:218 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 119s Get:219 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-markdown all 1.13-1 [162 kB] 119s Get:220 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 119s Get:221 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 zstd amd64 1.5.7+dfsg-1 [672 kB] 119s Preconfiguring packages ... 119s Fetched 367 MB in 26s (14.4 MB/s) 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 120s Preparing to unpack .../gcc-15-base_15.1.0-1ubuntu1_amd64.deb ... 120s Unpacking gcc-15-base:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ... 120s Setting up gcc-15-base:amd64 (15.1.0-1ubuntu1) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 120s Preparing to unpack .../libgcc-s1_15.1.0-1ubuntu1_amd64.deb ... 120s Unpacking libgcc-s1:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ... 120s Setting up libgcc-s1:amd64 (15.1.0-1ubuntu1) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 120s Preparing to unpack .../libatomic1_15.1.0-1ubuntu1_amd64.deb ... 120s Unpacking libatomic1:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ... 120s Preparing to unpack .../libstdc++6_15.1.0-1ubuntu1_amd64.deb ... 120s Unpacking libstdc++6:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ... 120s Setting up libstdc++6:amd64 (15.1.0-1ubuntu1) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 120s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_amd64.deb ... 120s Unpacking libzstd1:amd64 (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 120s Setting up libzstd1:amd64 (1.5.7+dfsg-1) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 120s Preparing to unpack .../000-gcc-14-base_14.2.0-22ubuntu1_amd64.deb ... 120s Unpacking gcc-14-base:amd64 (14.2.0-22ubuntu1) over (14.2.0-19ubuntu2) ... 120s Preparing to unpack .../001-libtirpc-common_1.3.6+ds-1_all.deb ... 120s Unpacking libtirpc-common (1.3.6+ds-1) over (1.3.4+ds-1.3) ... 120s Preparing to unpack .../002-libtirpc3t64_1.3.6+ds-1_amd64.deb ... 120s Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) over (1.3.4+ds-1.3) ... 120s Selecting previously unselected package libisl23:amd64. 120s Preparing to unpack .../003-libisl23_0.27-1_amd64.deb ... 120s Unpacking libisl23:amd64 (0.27-1) ... 120s Selecting previously unselected package libmpc3:amd64. 120s Preparing to unpack .../004-libmpc3_1.3.1-1build2_amd64.deb ... 120s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 120s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 120s Preparing to unpack .../005-cpp-14-x86-64-linux-gnu_14.2.0-22ubuntu1_amd64.deb ... 120s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 121s Selecting previously unselected package cpp-14. 121s Preparing to unpack .../006-cpp-14_14.2.0-22ubuntu1_amd64.deb ... 121s Unpacking cpp-14 (14.2.0-22ubuntu1) ... 121s Selecting previously unselected package cpp-x86-64-linux-gnu. 121s Preparing to unpack .../007-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 121s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 121s Selecting previously unselected package cpp. 121s Preparing to unpack .../008-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 121s Unpacking cpp (4:14.2.0-1ubuntu1) ... 121s Selecting previously unselected package libcc1-0:amd64. 121s Preparing to unpack .../009-libcc1-0_15.1.0-1ubuntu1_amd64.deb ... 121s Unpacking libcc1-0:amd64 (15.1.0-1ubuntu1) ... 121s Selecting previously unselected package libgomp1:amd64. 121s Preparing to unpack .../010-libgomp1_15.1.0-1ubuntu1_amd64.deb ... 121s Unpacking libgomp1:amd64 (15.1.0-1ubuntu1) ... 121s Selecting previously unselected package libitm1:amd64. 121s Preparing to unpack .../011-libitm1_15.1.0-1ubuntu1_amd64.deb ... 121s Unpacking libitm1:amd64 (15.1.0-1ubuntu1) ... 121s Selecting previously unselected package libasan8:amd64. 121s Preparing to unpack .../012-libasan8_15.1.0-1ubuntu1_amd64.deb ... 121s Unpacking libasan8:amd64 (15.1.0-1ubuntu1) ... 121s Selecting previously unselected package liblsan0:amd64. 121s Preparing to unpack .../013-liblsan0_15.1.0-1ubuntu1_amd64.deb ... 121s Unpacking liblsan0:amd64 (15.1.0-1ubuntu1) ... 121s Selecting previously unselected package libtsan2:amd64. 121s Preparing to unpack .../014-libtsan2_15.1.0-1ubuntu1_amd64.deb ... 121s Unpacking libtsan2:amd64 (15.1.0-1ubuntu1) ... 121s Selecting previously unselected package libubsan1:amd64. 121s Preparing to unpack .../015-libubsan1_15.1.0-1ubuntu1_amd64.deb ... 121s Unpacking libubsan1:amd64 (15.1.0-1ubuntu1) ... 121s Selecting previously unselected package libhwasan0:amd64. 121s Preparing to unpack .../016-libhwasan0_15.1.0-1ubuntu1_amd64.deb ... 121s Unpacking libhwasan0:amd64 (15.1.0-1ubuntu1) ... 121s Selecting previously unselected package libquadmath0:amd64. 121s Preparing to unpack .../017-libquadmath0_15.1.0-1ubuntu1_amd64.deb ... 121s Unpacking libquadmath0:amd64 (15.1.0-1ubuntu1) ... 121s Selecting previously unselected package libgcc-14-dev:amd64. 121s Preparing to unpack .../018-libgcc-14-dev_14.2.0-22ubuntu1_amd64.deb ... 121s Unpacking libgcc-14-dev:amd64 (14.2.0-22ubuntu1) ... 121s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 121s Preparing to unpack .../019-gcc-14-x86-64-linux-gnu_14.2.0-22ubuntu1_amd64.deb ... 121s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 122s Selecting previously unselected package gcc-14. 122s Preparing to unpack .../020-gcc-14_14.2.0-22ubuntu1_amd64.deb ... 122s Unpacking gcc-14 (14.2.0-22ubuntu1) ... 122s Selecting previously unselected package gcc-x86-64-linux-gnu. 122s Preparing to unpack .../021-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 122s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 122s Selecting previously unselected package gcc. 122s Preparing to unpack .../022-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 122s Unpacking gcc (4:14.2.0-1ubuntu1) ... 122s Selecting previously unselected package libstdc++-14-dev:amd64. 122s Preparing to unpack .../023-libstdc++-14-dev_14.2.0-22ubuntu1_amd64.deb ... 122s Unpacking libstdc++-14-dev:amd64 (14.2.0-22ubuntu1) ... 122s Selecting previously unselected package g++-14-x86-64-linux-gnu. 122s Preparing to unpack .../024-g++-14-x86-64-linux-gnu_14.2.0-22ubuntu1_amd64.deb ... 122s Unpacking g++-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 122s Selecting previously unselected package g++-14. 122s Preparing to unpack .../025-g++-14_14.2.0-22ubuntu1_amd64.deb ... 122s Unpacking g++-14 (14.2.0-22ubuntu1) ... 122s Selecting previously unselected package g++-x86-64-linux-gnu. 122s Preparing to unpack .../026-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 122s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 122s Selecting previously unselected package g++. 122s Preparing to unpack .../027-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 122s Unpacking g++ (4:14.2.0-1ubuntu1) ... 122s Selecting previously unselected package build-essential. 122s Preparing to unpack .../028-build-essential_12.12ubuntu1_amd64.deb ... 122s Unpacking build-essential (12.12ubuntu1) ... 122s Selecting previously unselected package dctrl-tools. 122s Preparing to unpack .../029-dctrl-tools_2.24-3build3_amd64.deb ... 122s Unpacking dctrl-tools (2.24-3build3) ... 122s Selecting previously unselected package fonts-dejavu-mono. 122s Preparing to unpack .../030-fonts-dejavu-mono_2.37-8_all.deb ... 122s Unpacking fonts-dejavu-mono (2.37-8) ... 122s Selecting previously unselected package fonts-dejavu-core. 122s Preparing to unpack .../031-fonts-dejavu-core_2.37-8_all.deb ... 122s Unpacking fonts-dejavu-core (2.37-8) ... 122s Selecting previously unselected package fontconfig-config. 122s Preparing to unpack .../032-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 123s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 123s Selecting previously unselected package libfontconfig1:amd64. 123s Preparing to unpack .../033-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 123s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 123s Selecting previously unselected package fontconfig. 123s Preparing to unpack .../034-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ... 123s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 123s Selecting previously unselected package fonts-font-awesome. 123s Preparing to unpack .../035-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 123s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 123s Selecting previously unselected package fonts-glyphicons-halflings. 123s Preparing to unpack .../036-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-4_all.deb ... 123s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-4) ... 123s Selecting previously unselected package fonts-lmodern. 123s Preparing to unpack .../037-fonts-lmodern_2.005-1_all.deb ... 123s Unpacking fonts-lmodern (2.005-1) ... 123s Selecting previously unselected package fonts-mathjax. 123s Preparing to unpack .../038-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 123s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 123s Selecting previously unselected package libgfortran5:amd64. 123s Preparing to unpack .../039-libgfortran5_15.1.0-1ubuntu1_amd64.deb ... 123s Unpacking libgfortran5:amd64 (15.1.0-1ubuntu1) ... 123s Selecting previously unselected package libgfortran-14-dev:amd64. 123s Preparing to unpack .../040-libgfortran-14-dev_14.2.0-22ubuntu1_amd64.deb ... 123s Unpacking libgfortran-14-dev:amd64 (14.2.0-22ubuntu1) ... 123s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 123s Preparing to unpack .../041-gfortran-14-x86-64-linux-gnu_14.2.0-22ubuntu1_amd64.deb ... 123s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 123s Selecting previously unselected package gfortran-14. 124s Preparing to unpack .../042-gfortran-14_14.2.0-22ubuntu1_amd64.deb ... 124s Unpacking gfortran-14 (14.2.0-22ubuntu1) ... 124s Selecting previously unselected package gfortran-x86-64-linux-gnu. 124s Preparing to unpack .../043-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 124s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 124s Selecting previously unselected package gfortran. 124s Preparing to unpack .../044-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 124s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 124s Selecting previously unselected package icu-devtools. 124s Preparing to unpack .../045-icu-devtools_76.1-1ubuntu2_amd64.deb ... 124s Unpacking icu-devtools (76.1-1ubuntu2) ... 124s Selecting previously unselected package javascript-common. 124s Preparing to unpack .../046-javascript-common_12_all.deb ... 124s Unpacking javascript-common (12) ... 124s Selecting previously unselected package libio-string-perl. 124s Preparing to unpack .../047-libio-string-perl_1.08-4_all.deb ... 124s Unpacking libio-string-perl (1.08-4) ... 124s Selecting previously unselected package liblatex-tounicode-perl. 124s Preparing to unpack .../048-liblatex-tounicode-perl_0.55-1_all.deb ... 124s Unpacking liblatex-tounicode-perl (0.55-1) ... 124s Selecting previously unselected package libbibtex-parser-perl. 124s Preparing to unpack .../049-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 124s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 124s Selecting previously unselected package libblas3:amd64. 124s Preparing to unpack .../050-libblas3_3.12.1-2_amd64.deb ... 124s Unpacking libblas3:amd64 (3.12.1-2) ... 124s Selecting previously unselected package libblas-dev:amd64. 124s Preparing to unpack .../051-libblas-dev_3.12.1-2_amd64.deb ... 124s Unpacking libblas-dev:amd64 (3.12.1-2) ... 124s Selecting previously unselected package libbz2-dev:amd64. 124s Preparing to unpack .../052-libbz2-dev_1.0.8-6_amd64.deb ... 124s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 124s Selecting previously unselected package libpixman-1-0:amd64. 124s Preparing to unpack .../053-libpixman-1-0_0.44.0-3_amd64.deb ... 124s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 124s Selecting previously unselected package libxcb-render0:amd64. 124s Preparing to unpack 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package libkpathsea6:amd64. 125s Preparing to unpack .../086-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 125s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 125s Selecting previously unselected package liblapack3:amd64. 125s Preparing to unpack .../087-liblapack3_3.12.1-2_amd64.deb ... 125s Unpacking liblapack3:amd64 (3.12.1-2) ... 126s Selecting previously unselected package liblapack-dev:amd64. 126s Preparing to unpack .../088-liblapack-dev_3.12.1-2_amd64.deb ... 126s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 126s Selecting previously unselected package liblerc4:amd64. 126s Preparing to unpack .../089-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 126s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 126s Selecting previously unselected package liblua5.4-0:amd64. 126s Preparing to unpack .../090-liblua5.4-0_5.4.7-1_amd64.deb ... 126s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 126s Selecting previously unselected package libmpfi0:amd64. 126s Preparing to unpack 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previously unselected package libpcre2-posix3:amd64. 126s Preparing to unpack .../102-libpcre2-posix3_10.45-1_amd64.deb ... 126s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 126s Selecting previously unselected package libpcre2-dev:amd64. 126s Preparing to unpack .../103-libpcre2-dev_10.45-1_amd64.deb ... 126s Unpacking libpcre2-dev:amd64 (10.45-1) ... 126s Selecting previously unselected package libpkgconf3:amd64. 126s Preparing to unpack .../104-libpkgconf3_1.8.1-4_amd64.deb ... 126s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 126s Selecting previously unselected package zlib1g-dev:amd64. 126s Preparing to unpack .../105-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 126s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 126s Selecting previously unselected package libpng-dev:amd64. 126s Preparing to unpack .../106-libpng-dev_1.6.47-1.1_amd64.deb ... 126s Unpacking libpng-dev:amd64 (1.6.47-1.1) ... 126s Selecting previously unselected package libpotrace0:amd64. 126s Preparing to unpack .../107-libpotrace0_1.16-2build1_amd64.deb ... 126s Unpacking libpotrace0:amd64 (1.16-2build1) ... 126s Selecting previously unselected package libptexenc1:amd64. 126s Preparing to unpack .../108-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 126s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 126s Selecting previously unselected package libreadline-dev:amd64. 126s Preparing to unpack .../109-libreadline-dev_8.2-6_amd64.deb ... 126s Unpacking libreadline-dev:amd64 (8.2-6) ... 126s Selecting previously unselected package libsharpyuv0:amd64. 126s Preparing to unpack .../110-libsharpyuv0_1.5.0-0.1_amd64.deb ... 126s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 126s Selecting previously unselected package libsm6:amd64. 126s Preparing to unpack .../111-libsm6_2%3a1.2.6-1_amd64.deb ... 126s Unpacking libsm6:amd64 (2:1.2.6-1) ... 126s Selecting previously unselected package libsynctex2:amd64. 127s Preparing to unpack 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127s Selecting previously unselected package libxmu6:amd64. 127s Preparing to unpack .../123-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 127s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 127s Selecting previously unselected package libxpm4:amd64. 127s Preparing to unpack .../124-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 127s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 127s Selecting previously unselected package libxaw7:amd64. 127s Preparing to unpack .../125-libxaw7_2%3a1.0.16-1_amd64.deb ... 127s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 127s Selecting previously unselected package libxi6:amd64. 127s Preparing to unpack .../126-libxi6_2%3a1.8.2-1_amd64.deb ... 127s Unpacking libxi6:amd64 (2:1.8.2-1) ... 127s Selecting previously unselected package libzstd-dev:amd64. 127s Preparing to unpack .../127-libzstd-dev_1.5.7+dfsg-1_amd64.deb ... 127s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-1) ... 127s Selecting previously unselected package libzzip-0-13t64:amd64. 127s Preparing to unpack .../128-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 127s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 127s Selecting previously unselected package zip. 127s Preparing to unpack .../129-zip_3.0-14ubuntu2_amd64.deb ... 127s Unpacking zip (3.0-14ubuntu2) ... 127s Selecting previously unselected package unzip. 127s Preparing to unpack .../130-unzip_6.0-28ubuntu6_amd64.deb ... 127s Unpacking unzip (6.0-28ubuntu6) ... 127s Selecting previously unselected package xdg-utils. 127s Preparing to unpack .../131-xdg-utils_1.2.1-2ubuntu1_all.deb ... 127s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 127s Selecting previously unselected package r-base-core. 127s Preparing to unpack .../132-r-base-core_4.5.0-3_amd64.deb ... 127s Unpacking r-base-core (4.5.0-3) ... 128s Selecting previously unselected package r-cran-littler. 128s Preparing to unpack .../133-r-cran-littler_0.3.21-1_amd64.deb ... 128s Unpacking r-cran-littler (0.3.21-1) ... 128s Selecting previously unselected package littler. 128s Preparing to unpack .../134-littler_0.3.21-1_all.deb ... 128s Unpacking littler (0.3.21-1) ... 128s Selecting previously unselected package node-bootstrap-sass. 128s Preparing to unpack .../135-node-bootstrap-sass_3.4.3-2_all.deb ... 128s Unpacking node-bootstrap-sass (3.4.3-2) ... 128s Selecting previously unselected package node-html5shiv. 128s Preparing to unpack .../136-node-html5shiv_3.7.3+dfsg-5_all.deb ... 128s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 128s Selecting previously unselected package node-normalize.css. 128s Preparing to unpack .../137-node-normalize.css_8.0.1-5_all.deb ... 128s Unpacking node-normalize.css (8.0.1-5) ... 128s Selecting previously unselected package pandoc-data. 128s Preparing to unpack .../138-pandoc-data_3.1.11.1-3build1_all.deb ... 128s Unpacking pandoc-data (3.1.11.1-3build1) ... 128s Selecting previously unselected package pandoc. 128s Preparing to unpack .../139-pandoc_3.1.11.1+ds-2_amd64.deb ... 128s Unpacking pandoc 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.../145-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 129s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 129s Selecting previously unselected package r-bioc-biocgenerics. 129s Preparing to unpack .../146-r-bioc-biocgenerics_0.52.0-2_all.deb ... 129s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 129s Selecting previously unselected package r-cran-base64enc. 129s Preparing to unpack .../147-r-cran-base64enc_0.1-3-3_amd64.deb ... 129s Unpacking r-cran-base64enc (0.1-3-3) ... 129s Selecting previously unselected package r-cran-digest. 129s Preparing to unpack .../148-r-cran-digest_0.6.37-1_amd64.deb ... 129s Unpacking r-cran-digest (0.6.37-1) ... 129s Selecting previously unselected package r-cran-fastmap. 129s Preparing to unpack .../149-r-cran-fastmap_1.2.0-1_amd64.deb ... 129s Unpacking r-cran-fastmap (1.2.0-1) ... 129s Selecting previously unselected package r-cran-rlang. 129s Preparing to unpack .../150-r-cran-rlang_1.1.5-3_amd64.deb ... 129s Unpacking r-cran-rlang (1.1.5-3) ... 129s Selecting previously unselected package r-cran-htmltools. 129s Preparing to unpack .../151-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 129s Unpacking r-cran-htmltools (0.5.8.1-1) ... 129s Selecting previously unselected package r-cran-evaluate. 129s Preparing to unpack .../152-r-cran-evaluate_1.0.3-1_all.deb ... 129s Unpacking r-cran-evaluate (1.0.3-1) ... 129s Selecting previously unselected package r-cran-xfun. 129s Preparing to unpack .../153-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 129s Unpacking r-cran-xfun (0.51+dfsg-1) ... 129s Selecting previously unselected package r-cran-highr. 129s Preparing to unpack .../154-r-cran-highr_0.11+dfsg-1_all.deb ... 129s Unpacking r-cran-highr (0.11+dfsg-1) ... 129s Selecting previously unselected package r-cran-yaml. 129s Preparing to unpack .../155-r-cran-yaml_2.3.10-1_amd64.deb ... 129s Unpacking r-cran-yaml (2.3.10-1) ... 129s Selecting previously unselected package libjs-mathjax. 129s Preparing to unpack .../156-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 129s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 130s Selecting previously unselected package r-cran-knitr. 130s Preparing to unpack .../157-r-cran-knitr_1.50+dfsg-1_all.deb ... 130s Unpacking r-cran-knitr (1.50+dfsg-1) ... 130s Selecting previously unselected package r-cran-cachem. 130s Preparing to unpack .../158-r-cran-cachem_1.1.0-1_amd64.deb ... 130s Unpacking r-cran-cachem (1.1.0-1) ... 130s Selecting previously unselected package r-cran-jquerylib. 130s Preparing to unpack .../159-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 130s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 130s Selecting previously unselected package r-cran-jsonlite. 130s Preparing to unpack .../160-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 130s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 130s Selecting previously unselected package r-cran-cli. 130s Preparing to unpack .../161-r-cran-cli_3.6.4-1_amd64.deb ... 130s Unpacking r-cran-cli (3.6.4-1) ... 130s Selecting previously unselected package r-cran-glue. 130s Preparing to unpack .../162-r-cran-glue_1.8.0-1_amd64.deb ... 130s Unpacking r-cran-glue (1.8.0-1) ... 130s Selecting previously unselected package r-cran-lifecycle. 130s Preparing to unpack .../163-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 130s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 130s Selecting previously unselected package r-cran-memoise. 130s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 130s Unpacking r-cran-memoise (2.0.1-1) ... 130s Selecting previously unselected package r-cran-mime. 130s Preparing to unpack .../165-r-cran-mime_0.12-2_amd64.deb ... 130s Unpacking r-cran-mime (0.12-2) ... 130s Selecting previously unselected package r-cran-fs. 130s Preparing to unpack .../166-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 130s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 130s Selecting previously unselected package r-cran-r6. 130s Preparing to unpack .../167-r-cran-r6_2.6.1-1_all.deb ... 130s Unpacking r-cran-r6 (2.6.1-1) ... 130s Selecting previously unselected package r-cran-rappdirs. 130s Preparing to unpack .../168-r-cran-rappdirs_0.3.3-1_amd64.deb ... 130s Unpacking r-cran-rappdirs (0.3.3-1) ... 130s Selecting previously unselected package r-cran-sass. 130s Preparing to unpack .../169-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 130s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 131s Selecting previously unselected package r-cran-bslib. 131s Preparing to unpack .../170-r-cran-bslib_0.9.0+dfsg-3_all.deb ... 131s Unpacking r-cran-bslib (0.9.0+dfsg-3) ... 131s Selecting previously unselected package r-cran-fontawesome. 131s Preparing to unpack .../171-r-cran-fontawesome_0.5.3-1_all.deb ... 131s Unpacking r-cran-fontawesome (0.5.3-1) ... 131s Selecting previously unselected package r-cran-tinytex. 131s Preparing to unpack .../172-r-cran-tinytex_0.56-1_all.deb ... 131s Unpacking r-cran-tinytex (0.56-1) ... 131s Selecting previously unselected package libjs-modernizr. 131s Preparing to unpack .../173-libjs-modernizr_3.13.0-0.1_all.deb ... 131s Unpacking libjs-modernizr (3.13.0-0.1) ... 131s Selecting previously unselected package r-cran-pkgkitten. 131s Preparing to unpack .../174-r-cran-pkgkitten_0.2.4-1_all.deb ... 131s Unpacking r-cran-pkgkitten (0.2.4-1) ... 131s Selecting previously unselected package r-cran-rcpp. 131s Preparing to unpack .../175-r-cran-rcpp_1.0.14-1_amd64.deb ... 131s Unpacking r-cran-rcpp (1.0.14-1) ... 131s Selecting previously unselected package r-cran-later. 131s Preparing to unpack .../176-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 131s Unpacking r-cran-later (1.4.1+dfsg-1) ... 131s Selecting previously unselected package r-cran-magrittr. 131s Preparing to unpack .../177-r-cran-magrittr_2.0.3-1_amd64.deb ... 131s Unpacking r-cran-magrittr (2.0.3-1) ... 131s Selecting previously unselected package r-cran-promises. 131s Preparing to unpack .../178-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 131s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 131s Selecting previously unselected package r-cran-httpuv. 131s Preparing to unpack .../179-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 131s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 131s Selecting previously unselected package r-cran-xtable. 131s Preparing to unpack .../180-r-cran-xtable_1%3a1.8-4-2_all.deb ... 131s Unpacking r-cran-xtable (1:1.8-4-2) ... 131s Selecting previously unselected package r-cran-sourcetools. 131s Preparing to unpack .../181-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 131s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 131s Selecting previously unselected package r-cran-crayon. 131s Preparing to unpack .../182-r-cran-crayon_1.5.3-1_all.deb ... 131s Unpacking r-cran-crayon (1.5.3-1) ... 131s Selecting previously unselected package r-cran-withr. 131s Preparing to unpack .../183-r-cran-withr_3.0.2+dfsg-1_all.deb ... 131s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 131s Selecting previously unselected package r-cran-commonmark. 131s Preparing to unpack .../184-r-cran-commonmark_1.9.5-1_amd64.deb ... 131s Unpacking r-cran-commonmark (1.9.5-1) ... 131s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 131s Preparing to unpack .../185-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 131s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 131s Selecting previously unselected package r-cran-shiny. 131s Preparing to unpack .../186-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 131s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 132s Selecting previously unselected package r-cran-rmarkdown. 132s Preparing to unpack .../187-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 132s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 132s Selecting previously unselected package r-cran-bookdown. 132s Preparing to unpack .../188-r-cran-bookdown_0.42+dfsg-1_all.deb ... 132s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 132s Selecting previously unselected package r-cran-biocmanager. 132s Preparing to unpack .../189-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 132s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 132s Selecting previously unselected package tex-common. 132s Preparing to unpack .../190-tex-common_6.19_all.deb ... 132s Unpacking tex-common (6.19) ... 132s Selecting previously unselected package t1utils. 132s Preparing to unpack .../191-t1utils_1.41-4build3_amd64.deb ... 132s Unpacking t1utils (1.41-4build3) ... 132s Selecting previously unselected package texlive-binaries. 132s Preparing to unpack .../192-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 132s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 132s Selecting previously unselected package texlive-base. 132s Preparing to unpack .../193-texlive-base_2024.20250309-1_all.deb ... 132s Unpacking texlive-base (2024.20250309-1) ... 133s Selecting previously unselected package texlive-latex-base. 133s Preparing to unpack .../194-texlive-latex-base_2024.20250309-1_all.deb ... 133s Unpacking texlive-latex-base (2024.20250309-1) ... 133s Selecting previously unselected package texlive-bibtex-extra. 133s Preparing to unpack .../195-texlive-bibtex-extra_2024.20250309-2_all.deb ... 133s Unpacking texlive-bibtex-extra (2024.20250309-2) ... 135s Selecting previously unselected package r-bioc-biocversion. 135s Preparing to unpack .../196-r-bioc-biocversion_3.20.0-2_all.deb ... 135s Unpacking r-bioc-biocversion (3.20.0-2) ... 135s Selecting previously unselected package r-bioc-biocstyle. 135s Preparing to unpack .../197-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 135s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 135s Selecting previously unselected package r-bioc-s4vectors. 135s Preparing to unpack .../198-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 135s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 135s Selecting previously unselected package r-bioc-iranges. 135s Preparing to unpack .../199-r-bioc-iranges_2.40.1-3_amd64.deb ... 135s Unpacking r-bioc-iranges (2.40.1-3) ... 136s Selecting previously unselected package r-bioc-zlibbioc. 136s Preparing to unpack .../200-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 136s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 136s Selecting previously unselected package r-bioc-xvector. 136s Preparing to unpack .../201-r-bioc-xvector_0.46.0-2_amd64.deb ... 136s Unpacking r-bioc-xvector (0.46.0-2) ... 136s Selecting previously unselected package r-cran-curl. 136s Preparing to unpack .../202-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 136s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 136s Selecting previously unselected package r-cran-sys. 136s Preparing to unpack .../203-r-cran-sys_3.4.3-1_amd64.deb ... 136s Unpacking r-cran-sys (3.4.3-1) ... 136s Selecting previously unselected package r-cran-askpass. 136s Preparing to unpack .../204-r-cran-askpass_1.2.1-1_amd64.deb ... 136s Unpacking r-cran-askpass (1.2.1-1) ... 136s Selecting previously unselected package r-cran-openssl. 136s Preparing to unpack .../205-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 136s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 136s Selecting previously unselected package r-cran-httr. 136s Preparing to unpack .../206-r-cran-httr_1.4.7+dfsg-1_all.deb ... 136s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 136s Selecting previously unselected package r-bioc-ucsc.utils. 136s Preparing to unpack .../207-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 136s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 136s Selecting previously unselected package r-bioc-genomeinfodbdata. 136s Preparing to unpack .../208-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 136s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 136s Selecting previously unselected package r-bioc-genomeinfodb. 136s Preparing to unpack .../209-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 136s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 136s Selecting previously unselected package r-bioc-biostrings. 136s Preparing to unpack .../210-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 136s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 136s Selecting previously unselected package r-cran-png. 136s Preparing to unpack .../211-r-cran-png_0.1-8-1build2_amd64.deb ... 136s Unpacking r-cran-png (0.1-8-1build2) ... 136s Selecting previously unselected package r-bioc-keggrest. 136s Preparing to unpack .../212-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 136s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 136s Selecting previously unselected package r-cran-markdown. 136s Preparing to unpack .../213-r-cran-markdown_1.13-1_all.deb ... 136s Unpacking r-cran-markdown (1.13-1) ... 136s Selecting previously unselected package r-cran-runit. 136s Preparing to unpack .../214-r-cran-runit_0.4.33-1_all.deb ... 136s Unpacking r-cran-runit (0.4.33-1) ... 136s Preparing to unpack .../215-zstd_1.5.7+dfsg-1_amd64.deb ... 136s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 136s Setting up libjs-json (0~20221030+~1.0.8-1) ... 136s Setting up javascript-common (12) ... 136s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 136s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 136s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 136s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 136s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 136s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 136s Setting up libzstd-dev:amd64 (1.5.7+dfsg-1) ... 136s Setting up libxpm4:amd64 (1:3.5.17-1build2) ... 136s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 136s Setting up libxi6:amd64 (2:1.8.2-1) ... 136s Setting up libxrender1:amd64 (1:0.9.12-1) ... 136s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 136s Setting up libjs-popper.js (1.16.1+ds-6) ... 136s Setting up gcc-14-base:amd64 (14.2.0-22ubuntu1) ... 136s Setting up libxcb-render0:amd64 (1.17.0-2) ... 136s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 136s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-4) ... 136s Setting up libtirpc-common (1.3.6+ds-1) ... 136s Setting up libjs-lunr (2.3.9~dfsg-2) ... 136s Setting up unzip (6.0-28ubuntu6) ... 136s Setting up liblatex-tounicode-perl (0.55-1) ... 136s Setting up x11-common (1:7.7+23ubuntu4) ... 137s Setting up node-html5shiv (3.7.3+dfsg-5) ... 137s Setting up libdeflate0:amd64 (1.23-2) ... 137s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 137s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 137s Setting up libreadline-dev:amd64 (8.2-6) ... 137s Setting up libgomp1:amd64 (15.1.0-1ubuntu1) ... 137s Setting up libjs-modernizr (3.13.0-0.1) ... 137s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 137s Setting up libpcre2-16-0:amd64 (10.45-1) ... 137s Setting up libjs-es5-shim (4.6.7-2) ... 137s Setting up tex-common (6.19) ... 137s update-language: texlive-base not installed and configured, doing nothing! 137s Setting up libio-string-perl (1.08-4) ... 137s Setting up zip (3.0-14ubuntu2) ... 137s Setting up libpcre2-32-0:amd64 (10.45-1) ... 137s Setting up libblas3:amd64 (3.12.1-2) ... 137s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 137s Setting up libpkgconf3:amd64 (1.8.1-4) ... 137s Setting up libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 137s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 137s Setting up t1utils (1.41-4build3) ... 137s Setting up libquadmath0:amd64 (15.1.0-1ubuntu1) ... 137s Setting up libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 137s Setting up libjs-d3 (3.5.17-4) ... 137s Setting up fonts-dejavu-mono (2.37-8) ... 137s Setting up libmpc3:amd64 (1.3.1-1build2) ... 137s Setting up libatomic1:amd64 (15.1.0-1ubuntu1) ... 137s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 137s Setting up libmpfi0:amd64 (1.5.4+ds-4) ... 137s Setting up icu-devtools (76.1-1ubuntu2) ... 137s Setting up fonts-dejavu-core (2.37-8) ... 137s Setting up pkgconf-bin (1.8.1-4) ... 137s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 137s Setting up libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 137s Setting up libgfortran5:amd64 (15.1.0-1ubuntu1) ... 137s Setting up libwebp7:amd64 (1.5.0-0.1) ... 137s Setting up liblzma-dev:amd64 (5.6.4-1ubuntu1) ... 137s Setting up libubsan1:amd64 (15.1.0-1ubuntu1) ... 137s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 137s Setting up libpcre2-posix3:amd64 (10.45-1) ... 137s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 137s Setting up libhwasan0:amd64 (15.1.0-1ubuntu1) ... 137s Setting up libasan8:amd64 (15.1.0-1ubuntu1) ... 137s Setting up fonts-lmodern (2.005-1) ... 137s Setting up liblua5.4-0:amd64 (5.4.7-1) ... 137s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 137s Setting up libthai-data (0.1.29-2build1) ... 137s Setting up node-bootstrap-sass (3.4.3-2) ... 137s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 137s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 137s Setting up libjs-bootstrap4 (4.6.2+dfsg-1) ... 137s Setting up libpaper2:amd64 (2.2.5-0.3) ... 137s Setting up pandoc-data (3.1.11.1-3build1) ... 137s Setting up libtsan2:amd64 (15.1.0-1ubuntu1) ... 137s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 137s Setting up libisl23:amd64 (0.27-1) ... 137s Setting up libdeflate-dev:amd64 (1.23-2) ... 137s Setting up node-normalize.css (8.0.1-5) ... 137s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ... 137s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 137s Setting up xdg-utils (1.2.1-2ubuntu1) ... 137s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 137s Setting up zstd (1.5.7+dfsg-1) ... 137s Setting up libcc1-0:amd64 (15.1.0-1ubuntu1) ... 137s Setting up liblsan0:amd64 (15.1.0-1ubuntu1) ... 137s Setting up libblas-dev:amd64 (3.12.1-2) ... 137s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 137s Setting up dctrl-tools (2.24-3build3) ... 137s Setting up libjs-bootstrap (3.4.1+dfsg-4) ... 137s Setting up libitm1:amd64 (15.1.0-1ubuntu1) ... 137s Setting up libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 137s Setting up libbz2-dev:amd64 (1.0.8-6) ... 137s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 137s Setting up libpotrace0:amd64 (1.16-2build1) ... 137s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 137s Setting up libice6:amd64 (2:1.1.1-1) ... 137s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 137s Setting up liblapack3:amd64 (3.12.1-2) ... 137s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 137s Setting up libpcre2-dev:amd64 (10.45-1) ... 137s Setting up libtirpc3t64:amd64 (1.3.6+ds-1) ... 137s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 138s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 138s Setting up libpng-dev:amd64 (1.6.47-1.1) ... 138s Setting up 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(8c-2ubuntu11) ... 138s Setting up libstdc++-14-dev:amd64 (14.2.0-22ubuntu1) ... 138s Setting up libsm6:amd64 (2:1.2.6-1) ... 138s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 138s Setting up libgfortran-14-dev:amd64 (14.2.0-22ubuntu1) ... 138s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 140s Regenerating fonts cache... done. 140s Setting up libxft2:amd64 (2.3.6-1build1) ... 140s Setting up libtk8.6:amd64 (8.6.16-1) ... 140s Setting up libpango-1.0-0:amd64 (1.56.3-1) ... 140s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 140s Setting up libcairo2:amd64 (1.18.4-1) ... 140s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 140s Setting up cpp (4:14.2.0-1ubuntu1) ... 140s Setting up gcc-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 140s Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ... 140s Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ... 140s Setting up libxmu6:amd64 (2:1.1.3-3build2) ... 140s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 140s Setting up libxaw7:amd64 (2:1.0.16-1) ... 140s Setting up gcc-14 (14.2.0-22ubuntu1) ... 140s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 140s Setting up r-base-core (4.5.0-3) ... 140s Creating config file /etc/R/Renviron with new version 140s Setting up r-cran-crayon (1.5.3-1) ... 140s Setting up r-cran-sourcetools (0.1.7-1-1) ... 140s Setting up g++-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 140s Setting up texlive-binaries (2024.20240313.70630+ds-6) ... 140s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 140s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 140s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 140s Setting up r-cran-commonmark (1.9.5-1) ... 140s Setting up g++-14 (14.2.0-22ubuntu1) ... 140s Setting up r-cran-r6 (2.6.1-1) ... 140s Setting up r-cran-pkgkitten (0.2.4-1) ... 140s Setting up gfortran-14 (14.2.0-22ubuntu1) ... 140s Setting up texlive-base (2024.20250309-1) ... 141s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 141s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 141s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 141s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 142s Setting up r-cran-magrittr (2.0.3-1) ... 142s Setting up r-cran-rappdirs (0.3.3-1) ... 142s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 142s Setting up r-cran-littler (0.3.21-1) ... 142s Setting up r-cran-fs (1.6.5+dfsg-1) ... 142s Setting up r-cran-rcpp (1.0.14-1) ... 142s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 142s Setting up r-bioc-biocgenerics (0.52.0-2) ... 142s Setting up r-cran-rlang (1.1.5-3) ... 142s Setting up littler (0.3.21-1) ... 142s Setting up r-cran-xfun (0.51+dfsg-1) ... 142s Setting up r-cran-sys (3.4.3-1) ... 142s Setting up r-cran-withr (3.0.2+dfsg-1) ... 142s Setting up r-cran-mime (0.12-2) ... 142s Setting up r-cran-base64enc (0.1-3-3) ... 142s Setting up r-cran-digest (0.6.37-1) ... 142s Setting up r-cran-yaml (2.3.10-1) ... 142s Setting up r-cran-evaluate (1.0.3-1) ... 142s Setting up r-cran-highr (0.11+dfsg-1) ... 142s Setting up r-cran-glue (1.8.0-1) ... 142s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 142s Setting up r-cran-xtable (1:1.8-4-2) ... 142s Setting up r-cran-cli (3.6.4-1) ... 142s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 142s Setting up r-bioc-biocversion (3.20.0-2) ... 142s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 142s Setting up gcc (4:14.2.0-1ubuntu1) ... 142s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 142s Setting up r-cran-askpass (1.2.1-1) ... 142s Setting up r-cran-fastmap (1.2.0-1) ... 142s Setting up r-cran-png (0.1-8-1build2) ... 142s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 142s Setting up texlive-latex-base (2024.20250309-1) ... 142s Setting up r-cran-markdown (1.13-1) ... 142s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 142s Setting up r-cran-runit (0.4.33-1) ... 142s Setting up r-cran-later (1.4.1+dfsg-1) ... 142s Setting up r-cran-htmltools (0.5.8.1-1) ... 142s Setting up r-cran-tinytex (0.56-1) ... 142s Setting up r-cran-knitr (1.50+dfsg-1) ... 142s Setting up g++ (4:14.2.0-1ubuntu1) ... 142s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 142s Setting up r-cran-cachem (1.1.0-1) ... 142s Setting up r-cran-sass (0.4.9+dfsg-1) ... 142s Setting up build-essential (12.12ubuntu1) ... 142s Setting up r-bioc-iranges (2.40.1-3) ... 142s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 142s Setting up r-cran-fontawesome (0.5.3-1) ... 142s Setting up gfortran (4:14.2.0-1ubuntu1) ... 142s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 142s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 142s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 142s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 142s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 142s Setting up texlive-bibtex-extra (2024.20250309-2) ... 142s Setting up r-cran-httr (1.4.7+dfsg-1) ... 142s Setting up r-cran-memoise (2.0.1-1) ... 142s Setting up r-cran-promises (1.3.2+dfsg-1) ... 142s Setting up r-bioc-xvector (0.46.0-2) ... 142s Setting up r-base-dev (4.5.0-3) ... 142s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 142s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 142s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 142s Setting up r-cran-bslib (0.9.0+dfsg-3) ... 142s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 142s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 142s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 142s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 142s Setting up r-cran-bookdown (0.42+dfsg-1) ... 142s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 142s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 142s Processing triggers for libc-bin (2.41-6ubuntu1) ... 142s Processing triggers for man-db (2.13.0-1) ... 144s Processing triggers for install-info (7.1.1-1) ... 144s Processing triggers for tex-common (6.19) ... 145s Running updmap-sys. This may take some time... done. 145s Running mktexlsr /var/lib/texmf ... done. 145s Building format(s) --all. 175s This may take some time... done. 176s autopkgtest [23:48:20]: testbed environment configured for cross-architecture building 176s autopkgtest [23:48:20]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 176s autopkgtest [23:48:20]: test pkg-r-autopkgtest: [----------------------- 176s Test: Try to load the R library KEGGREST 176s 176s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" 176s Copyright (C) 2025 The R Foundation for Statistical Computing 176s Platform: x86_64-pc-linux-gnu 176s 176s R is free software and comes with ABSOLUTELY NO WARRANTY. 176s You are welcome to redistribute it under certain conditions. 176s Type 'license()' or 'licence()' for distribution details. 176s 176s R is a collaborative project with many contributors. 176s Type 'contributors()' for more information and 176s 'citation()' on how to cite R or R packages in publications. 176s 176s Type 'demo()' for some demos, 'help()' for on-line help, or 176s 'help.start()' for an HTML browser interface to help. 176s Type 'q()' to quit R. 176s 176s > library('KEGGREST') 178s > 179s Other tests are currently unsupported! 179s They will be progressively added. 179s autopkgtest [23:48:23]: test pkg-r-autopkgtest: -----------------------] 179s autopkgtest [23:48:23]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 179s pkg-r-autopkgtest PASS 180s autopkgtest [23:48:24]: @@@@@@@@@@@@@@@@@@@@ summary 180s pkg-r-autopkgtest PASS 196s nova [W] Skipping flock for amd64 196s Creating nova instance adt-questing-i386-r-bioc-keggrest-20250502-234524-juju-7f2275-prod-proposed-migration-environment-23-23012911-5b33-472f-be15-8f9f0d698e97 from image adt/ubuntu-questing-amd64-server-20250502.img (UUID 9956ea44-e870-4bd8-8ad1-dc5f8a09f1f9)... 196s nova [W] Timed out waiting for 5e45942b-173a-4c6a-a6e9-449e9a9b3e1b to get deleted.