0s autopkgtest [23:19:59]: starting date and time: 2025-05-02 23:19:59+0000 0s autopkgtest [23:19:59]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [23:19:59]: host juju-7f2275-prod-proposed-migration-environment-23; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dwt8v4nm/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-bioccheck --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-23@bos03-7.secgroup --name adt-questing-i386-r-bioc-bioccheck-20250502-231958-juju-7f2275-prod-proposed-migration-environment-23-490abdb8-27c8-450f-b972-ac6fd99a0e22 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-23 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 50s autopkgtest [23:20:49]: testbed dpkg architecture: amd64 50s autopkgtest [23:20:49]: testbed apt version: 3.0.0 50s autopkgtest [23:20:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 50s autopkgtest [23:20:49]: testbed release detected to be: None 51s autopkgtest [23:20:50]: updating testbed package index (apt update) 52s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 52s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 52s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 52s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 52s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.1 kB] 52s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1947 kB] 52s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB] 52s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [178 kB] 52s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [233 kB] 52s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1515 kB] 52s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [671 kB] 52s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [13.9 kB] 52s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [15.1 kB] 53s Fetched 4894 kB in 1s (4005 kB/s) 54s Reading package lists... 54s autopkgtest [23:20:53]: upgrading testbed (apt dist-upgrade and autopurge) 54s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 55s Starting 2 pkgProblemResolver with broken count: 0 55s Done 55s Entering ResolveByKeep 56s 56s Calculating upgrade... 56s The following packages will be upgraded: 56s ed fwupd htop libftdi1-2 libfwupd3 libnpth0t64 libsensors-config libsensors5 56s liburcu8t64 mokutil nano usb.ids 56s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s Need to get 6445 kB of archives. 56s After this operation, 193 kB disk space will be freed. 56s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libnpth0t64 amd64 1.8-3 [9294 B] 56s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 ed amd64 1.21.1-1 [57.2 kB] 56s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libsensors-config all 1:3.6.2-2 [6756 B] 56s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libsensors5 amd64 1:3.6.2-2 [28.7 kB] 56s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 liburcu8t64 amd64 0.15.2-2 [63.9 kB] 56s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 nano amd64 8.4-1 [290 kB] 56s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 usb.ids all 2025.04.01-1 [223 kB] 56s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 fwupd amd64 2.0.8-3 [5396 kB] 57s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libfwupd3 amd64 2.0.8-3 [136 kB] 57s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 htop amd64 3.4.1-4 [175 kB] 57s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 libftdi1-2 amd64 1.5-10 [30.7 kB] 57s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 mokutil amd64 0.7.2-1 [27.9 kB] 57s Fetched 6445 kB in 1s (8357 kB/s) 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 57s Preparing to unpack .../libnpth0t64_1.8-3_amd64.deb ... 57s Unpacking libnpth0t64:amd64 (1.8-3) over (1.8-2) ... 57s Setting up libnpth0t64:amd64 (1.8-3) ... 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 57s Preparing to unpack .../00-ed_1.21.1-1_amd64.deb ... 57s Unpacking ed (1.21.1-1) over (1.21-1) ... 57s Preparing to unpack .../01-libsensors-config_1%3a3.6.2-2_all.deb ... 57s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 57s Preparing to unpack .../02-libsensors5_1%3a3.6.2-2_amd64.deb ... 57s Unpacking libsensors5:amd64 (1:3.6.2-2) over (1:3.6.0-10) ... 57s Preparing to unpack .../03-liburcu8t64_0.15.2-2_amd64.deb ... 57s Unpacking liburcu8t64:amd64 (0.15.2-2) over (0.15.1-1) ... 57s Preparing to unpack .../04-nano_8.4-1_amd64.deb ... 57s Unpacking nano (8.4-1) over (8.3-1) ... 57s Preparing to unpack .../05-usb.ids_2025.04.01-1_all.deb ... 57s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 57s Preparing to unpack .../06-fwupd_2.0.8-3_amd64.deb ... 58s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 58s Preparing to unpack .../07-libfwupd3_2.0.8-3_amd64.deb ... 58s Unpacking libfwupd3:amd64 (2.0.8-3) over (2.0.7-1) ... 58s Preparing to unpack .../08-htop_3.4.1-4_amd64.deb ... 58s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 58s Preparing to unpack .../09-libftdi1-2_1.5-10_amd64.deb ... 58s Unpacking libftdi1-2:amd64 (1.5-10) over (1.5-8build1) ... 58s Preparing to unpack .../10-mokutil_0.7.2-1_amd64.deb ... 58s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ... 58s Setting up liburcu8t64:amd64 (0.15.2-2) ... 58s Setting up mokutil (0.7.2-1) ... 58s Setting up htop (3.4.1-4) ... 58s Setting up libsensors-config (1:3.6.2-2) ... 58s Installing new version of config file /etc/sensors3.conf ... 58s Setting up libfwupd3:amd64 (2.0.8-3) ... 58s Setting up libftdi1-2:amd64 (1.5-10) ... 58s Setting up ed (1.21.1-1) ... 58s Setting up usb.ids (2025.04.01-1) ... 58s Setting up libsensors5:amd64 (1:3.6.2-2) ... 58s Setting up nano (8.4-1) ... 58s Installing new version of config file /etc/nanorc ... 58s Setting up fwupd (2.0.8-3) ... 59s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 59s fwupd.service is a disabled or a static unit not running, not starting it. 59s Processing triggers for man-db (2.13.0-1) ... 60s Processing triggers for dbus (1.16.2-2ubuntu1) ... 60s Processing triggers for install-info (7.1.1-1) ... 60s Processing triggers for libc-bin (2.41-6ubuntu1) ... 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s Starting pkgProblemResolver with broken count: 0 61s Starting 2 pkgProblemResolver with broken count: 0 61s Done 61s Solving dependencies... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [23:21:01]: rebooting testbed after setup commands that affected boot 85s autopkgtest [23:21:24]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 87s autopkgtest [23:21:26]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-bioccheck 89s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-bioccheck 1.42.1+dfsg-1 (dsc) [2316 B] 89s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-bioccheck 1.42.1+dfsg-1 (tar) [62.5 kB] 89s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-bioccheck 1.42.1+dfsg-1 (diff) [5676 B] 89s gpgv: Signature made Sun Jan 12 11:50:36 2025 UTC 89s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 89s gpgv: issuer "crusoe@debian.org" 89s gpgv: Can't check signature: No public key 89s dpkg-source: warning: cannot verify inline signature for ./r-bioc-bioccheck_1.42.1+dfsg-1.dsc: no acceptable signature found 89s autopkgtest [23:21:28]: testing package r-bioc-bioccheck version 1.42.1+dfsg-1 90s autopkgtest [23:21:29]: build not needed 91s autopkgtest [23:21:30]: test pkg-r-autopkgtest: preparing testbed 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Starting pkgProblemResolver with broken count: 39 91s Starting 2 pkgProblemResolver with broken count: 39 91s Investigating (0) r-cran-testthat:amd64 < none -> 3.2.3-1 @un puN Ib > 91s Broken r-cran-testthat:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.1) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-testthat:amd64 592 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-testthat:amd64 592 91s Investigating (0) r-cran-vctrs:amd64 < none -> 0.6.5-1 @un puN Ib > 91s Broken r-cran-vctrs:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-vctrs:amd64 271 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-vctrs:amd64 271 91s Investigating (0) r-cran-tibble:amd64 < none -> 3.2.1+dfsg-3 @un puN Ib > 91s Broken r-cran-tibble:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.2) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-tibble:amd64 234 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-tibble:amd64 234 91s Investigating (0) r-cran-shiny:amd64 < none -> 1.10.0+dfsg-2 @un puN Ib > 91s Broken r-cran-shiny:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-shiny:amd64 218 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-shiny:amd64 218 91s Investigating (0) r-cran-lifecycle:amd64 < none -> 1.0.4+dfsg-1 @un puN Ib > 91s Broken r-cran-lifecycle:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-lifecycle:amd64 205 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-lifecycle:amd64 205 91s Investigating (0) r-cran-xml2:amd64 < none -> 1.3.8-1 @un puN Ib > 91s Broken r-cran-xml2:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-xml2:amd64 194 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-xml2:amd64 194 91s Investigating (0) r-base-core:amd64 < none -> 4.5.0-3 @un puN Ib > 91s Broken r-base-core:amd64 Breaks on r-bioc-bioccheck:amd64 < none -> 1.42.1+dfsg-1 @un puN Ib > (< 1.42.1+dfsg-2~) 91s Considering r-bioc-bioccheck:amd64 -1 as a solution to r-base-core:amd64 192 91s Investigating (0) r-cran-htmltools:amd64 < none -> 0.5.8.1-1 @un puN Ib > 91s Broken r-cran-htmltools:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-htmltools:amd64 144 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-htmltools:amd64 144 91s Investigating (0) r-cran-pkgload:amd64 < none -> 1.4.0-1 @un puN Ib > 91s Broken r-cran-pkgload:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.1) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-pkgload:amd64 121 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-pkgload:amd64 121 91s Investigating (0) r-cran-waldo:amd64 < none -> 0.6.1-2 @un puN Ib > 91s Broken r-cran-waldo:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-waldo:amd64 119 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-waldo:amd64 119 91s Investigating (0) r-cran-sass:amd64 < none -> 0.4.9+dfsg-1 @un puN Ib > 91s Broken r-cran-sass:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-sass:amd64 119 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-sass:amd64 119 91s Investigating (0) r-cran-bslib:amd64 < none -> 0.9.0+dfsg-1syncable1 @un puN Ib > 91s Broken r-cran-bslib:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-bslib:amd64 117 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-bslib:amd64 117 91s Investigating (0) r-cran-usethis:amd64 < none -> 3.1.0-1 @un puN Ib > 91s Broken r-cran-usethis:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-usethis:amd64 95 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-usethis:amd64 95 91s Investigating (0) r-cran-dplyr:amd64 < none -> 1.1.4-4 @un puN Ib > 91s Broken r-cran-dplyr:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-dplyr:amd64 85 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-dplyr:amd64 85 91s Investigating (0) r-cran-rsqlite:amd64 < none -> 2.3.9-1 @un puN Ib > 91s Broken r-cran-rsqlite:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-rsqlite:amd64 72 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-rsqlite:amd64 72 91s Investigating (0) r-cran-fontawesome:amd64 < none -> 0.5.3-1 @un puN Ib > 91s Broken r-cran-fontawesome:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.6) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-fontawesome:amd64 69 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-fontawesome:amd64 69 91s Investigating (0) r-cran-pillar:amd64 < none -> 1.10.1+dfsg-1 @un puN Ib > 91s Broken r-cran-pillar:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.2) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-pillar:amd64 60 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-pillar:amd64 60 91s Investigating (0) r-cran-downlit:amd64 < none -> 0.4.4-1 @un puN Ib > 91s Broken r-cran-downlit:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-downlit:amd64 56 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-downlit:amd64 56 91s Investigating (0) r-cran-purrr:amd64 < none -> 1.0.4-1 @un puN Ib > 91s Broken r-cran-purrr:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.1) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-purrr:amd64 46 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-purrr:amd64 46 91s Investigating (0) r-cran-later:amd64 < none -> 1.4.1+dfsg-1 @un puN Ib > 91s Broken r-cran-later:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-later:amd64 38 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-later:amd64 38 91s Investigating (0) r-cran-tidyr:amd64 < none -> 1.3.1-1 @un puN Ib > 91s Broken r-cran-tidyr:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.1) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-tidyr:amd64 30 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-tidyr:amd64 30 91s Investigating (0) r-cran-blob:amd64 < none -> 1.2.4-1 @un puN Ib > 91s Broken r-cran-blob:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-blob:amd64 24 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-blob:amd64 24 91s Investigating (0) r-cran-tidyselect:amd64 < none -> 1.2.1+dfsg-1 @un puN Ib > 91s Broken r-cran-tidyselect:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.4) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-tidyselect:amd64 23 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-tidyselect:amd64 23 91s Investigating (0) r-cran-gh:amd64 < none -> 1.4.1-1 @un puN Ib > 91s Broken r-cran-gh:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-gh:amd64 21 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-gh:amd64 21 91s Investigating (0) r-cran-pkgdown:amd64 < none -> 2.1.1-2 @un puN Ib > 91s Broken r-cran-pkgdown:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-pkgdown:amd64 20 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-pkgdown:amd64 20 91s Investigating (0) r-cran-cachem:amd64 < none -> 1.1.0-1 @un puN Ib > 91s Broken r-cran-cachem:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-cachem:amd64 17 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-cachem:amd64 17 91s Investigating (0) r-cran-promises:amd64 < none -> 1.3.2+dfsg-1 @un puN Ib > 91s Broken r-cran-promises:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-promises:amd64 15 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-promises:amd64 15 91s Investigating (0) r-cran-memoise:amd64 < none -> 2.0.1-1 @un puN Ib > 91s Broken r-cran-memoise:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-memoise:amd64 14 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-memoise:amd64 14 91s Investigating (0) r-cran-dbplyr:amd64 < none -> 2.5.0+dfsg-1 @un puN Ib > 91s Broken r-cran-dbplyr:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.1) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-dbplyr:amd64 11 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-dbplyr:amd64 11 91s Investigating (0) r-cran-stringr:amd64 < none -> 1.5.1-1 @un puN Ib > 91s Broken r-cran-stringr:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-stringr:amd64 10 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-stringr:amd64 10 91s Investigating (0) r-cran-roxygen2:amd64 < none -> 7.3.2-1 @un puN Ib > 91s Broken r-cran-roxygen2:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.6) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-roxygen2:amd64 7 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-roxygen2:amd64 7 91s Investigating (0) r-cran-httr2:amd64 < none -> 1.1.1-1 @un puN Ib > 91s Broken r-cran-httr2:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-httr2:amd64 6 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-httr2:amd64 6 91s Investigating (0) r-cran-rvest:amd64 < none -> 1.0.4-1 @un puN Ib > 91s Broken r-cran-rvest:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-rvest:amd64 5 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-rvest:amd64 5 91s Investigating (0) r-cran-ellipsis:amd64 < none -> 0.3.2-2 @un puN Ib > 91s Broken r-cran-ellipsis:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.3.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-ellipsis:amd64 1 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-ellipsis:amd64 1 91s Investigating (0) r-cran-devtools:amd64 < none -> 2.4.5-1 @un puN Ib > 91s Broken r-cran-devtools:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.4) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-devtools:amd64 1 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-devtools:amd64 1 91s Investigating (0) r-cran-profvis:amd64 < none -> 0.4.0+dfsg-1 @un puN Ib > 91s Broken r-cran-profvis:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-profvis:amd64 1 91s Considering r-cran-rlang:amd64 14 as a solution to r-cran-profvis:amd64 1 91s Investigating (0) r-bioc-biocviews:amd64 < none -> 1.74.0-2 @un puN Ib > 91s Broken r-bioc-biocviews:amd64 Depends on r-bioc-graph:amd64 < none @un pH > (>= 1.9.26) 91s Considering r-bioc-graph:amd64 2 as a solution to r-bioc-biocviews:amd64 0 91s Considering r-bioc-graph:amd64 2 as a solution to r-bioc-biocviews:amd64 0 91s Investigating (0) r-bioc-rbgl:amd64 < none -> 1.82.0+dfsg-2 @un puN Ib > 91s Broken r-bioc-rbgl:amd64 Depends on r-bioc-graph:amd64 < none @un pH > 91s Considering r-bioc-graph:amd64 2 as a solution to r-bioc-rbgl:amd64 0 91s Considering r-bioc-graph:amd64 2 as a solution to r-bioc-rbgl:amd64 0 91s Investigating (0) r-bioc-bioccheck:amd64 < none -> 1.42.1+dfsg-1 @un puN Ib > 91s Broken r-bioc-bioccheck:amd64 Depends on r-bioc-graph:amd64 < none @un pH > 91s Considering r-bioc-graph:amd64 2 as a solution to r-bioc-bioccheck:amd64 -1 91s Considering r-bioc-graph:amd64 2 as a solution to r-bioc-bioccheck:amd64 -1 91s Done 91s Some packages could not be installed. This may mean that you have 91s requested an impossible situation or if you are using the unstable 91s distribution that some required packages have not yet been created 91s or been moved out of Incoming. 91s The following information may help to resolve the situation: 91s 91s The following packages have unmet dependencies: 91s r-base-core : Breaks: r-bioc-bioccheck (< 1.42.1+dfsg-2~) but 1.42.1+dfsg-1 is to be installed 91s r-bioc-bioccheck : Depends: r-bioc-graph but it is not installable 91s r-bioc-biocviews : Depends: r-bioc-graph (>= 1.9.26) but it is not installable 91s r-bioc-rbgl : Depends: r-bioc-graph but it is not installable 91s r-cran-blob : Depends: r-cran-rlang but it is not installable 91s r-cran-bslib : Depends: r-cran-rlang but it is not installable 91s r-cran-cachem : Depends: r-cran-rlang but it is not installable 91s r-cran-dbplyr : Depends: r-cran-rlang (>= 1.1.1) but it is not installable 91s r-cran-devtools : Depends: r-cran-rlang (>= 1.0.4) but it is not installable 91s r-cran-downlit : Depends: r-cran-rlang but it is not installable 91s r-cran-dplyr : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s r-cran-ellipsis : Depends: r-cran-rlang (>= 0.3.0) but it is not installable 91s r-cran-fontawesome : Depends: r-cran-rlang (>= 1.0.6) but it is not installable 91s r-cran-gh : Depends: r-cran-rlang (>= 1.0.0) but it is not installable 91s r-cran-htmltools : Depends: r-cran-rlang (>= 1.0.0) but it is not installable 91s r-cran-httr2 : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s r-cran-later : Depends: r-cran-rlang but it is not installable 91s r-cran-lifecycle : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s r-cran-memoise : Depends: r-cran-rlang (>= 0.4.10) but it is not installable 91s r-cran-pillar : Depends: r-cran-rlang (>= 1.0.2) but it is not installable 91s r-cran-pkgdown : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s r-cran-pkgload : Depends: r-cran-rlang (>= 1.1.1) but it is not installable 91s r-cran-profvis : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s r-cran-promises : Depends: r-cran-rlang but it is not installable 91s r-cran-purrr : Depends: r-cran-rlang (>= 1.1.1) but it is not installable 91s r-cran-roxygen2 : Depends: r-cran-rlang (>= 1.0.6) but it is not installable 91s r-cran-rsqlite : Depends: r-cran-rlang but it is not installable 91s r-cran-rvest : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s r-cran-sass : Depends: r-cran-rlang (>= 0.4.10) but it is not installable 91s r-cran-shiny : Depends: r-cran-rlang (>= 0.4.10) but it is not installable 91s r-cran-stringr : Depends: r-cran-rlang (>= 1.0.0) but it is not installable 91s r-cran-testthat : Depends: r-cran-rlang (>= 1.1.1) but it is not installable 91s r-cran-tibble : Depends: r-cran-rlang (>= 1.0.2) but it is not installable 91s r-cran-tidyr : Depends: r-cran-rlang (>= 1.1.1) but it is not installable 91s r-cran-tidyselect : Depends: r-cran-rlang (>= 1.0.4) but it is not installable 91s r-cran-usethis : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s r-cran-vctrs : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s r-cran-waldo : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s r-cran-xml2 : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 91s E: Unable to correct problems, you have held broken packages. 91s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Starting pkgProblemResolver with broken count: 0 92s Starting 2 pkgProblemResolver with broken count: 0 92s Done 93s The following NEW packages will be installed: 93s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 93s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 93s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 93s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 93s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 93s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 93s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 93s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 93s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 93s libgfortran5 libgit2-1.9 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 93s libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 93s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 93s libjs-bootstrap4 libjs-bootswatch libjs-d3 libjs-es5-shim libjs-highlight.js 93s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 93s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 93s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 93s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 93s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 93s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 93s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 93s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 93s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 93s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 93s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 93s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 93s libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler node-bootstrap-sass 93s node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest 93s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase 93s r-bioc-biocbaseutils r-bioc-bioccheck r-bioc-biocfilecache 93s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-biocviews 93s r-bioc-graph r-bioc-rbgl r-cran-askpass r-cran-base64enc r-cran-bh 93s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 93s r-cran-bookdown r-cran-brew r-cran-brio r-cran-bslib r-cran-cachem 93s r-cran-callr r-cran-cli r-cran-clipr r-cran-codetools r-cran-commonmark 93s r-cran-cpp11 r-cran-crayon r-cran-credentials r-cran-curl r-cran-dbi 93s r-cran-dbplyr r-cran-desc r-cran-devtools r-cran-diffobj r-cran-digest 93s r-cran-downlit r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 93s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-fs r-cran-generics 93s r-cran-gert r-cran-gh r-cran-gitcreds r-cran-glue r-cran-highr 93s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 93s r-cran-ini r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 93s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime 93s r-cran-miniui r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 93s r-cran-pkgdown r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-praise 93s r-cran-prettyunits r-cran-processx r-cran-profvis r-cran-promises r-cran-ps 93s r-cran-purrr r-cran-r6 r-cran-ragg r-cran-rappdirs r-cran-rcmdcheck 93s r-cran-rcpp r-cran-rcurl r-cran-remotes r-cran-rlang r-cran-rmarkdown 93s r-cran-roxygen2 r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi 93s r-cran-runit r-cran-rversions r-cran-rvest r-cran-sass r-cran-selectr 93s r-cran-sessioninfo r-cran-shiny r-cran-sourcetools r-cran-stringdist 93s r-cran-stringi r-cran-stringr r-cran-sys r-cran-systemfonts r-cran-testthat 93s r-cran-textshaping r-cran-tibble r-cran-tidyr r-cran-tidyselect 93s r-cran-tinytest r-cran-tinytex r-cran-urlchecker r-cran-usethis r-cran-utf8 93s r-cran-vctrs r-cran-waldo r-cran-whisker r-cran-withr r-cran-xfun r-cran-xml 93s r-cran-xml2 r-cran-xopen r-cran-xtable r-cran-yaml r-cran-zip t1utils 93s tex-common texlive-base texlive-bibtex-extra texlive-binaries 93s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 93s The following packages will be upgraded: 93s gcc-14-base gcc-15-base libatomic1 libgcc-s1 libstdc++6 libtirpc-common 93s libtirpc3t64 libzstd1 zstd 93s 9 upgraded, 286 newly installed, 0 to remove and 108 not upgraded. 93s Need to get 380 MB of archives. 93s After this operation, 1287 MB of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gcc-15-base amd64 15.1.0-1ubuntu1 [54.5 kB] 93s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgcc-s1 amd64 15.1.0-1ubuntu1 [78.1 kB] 93s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libatomic1 amd64 15.1.0-1ubuntu1 [10.5 kB] 93s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libstdc++6 amd64 15.1.0-1ubuntu1 [814 kB] 94s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [308 kB] 94s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gcc-14-base amd64 14.2.0-22ubuntu1 [55.1 kB] 94s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libtirpc-common all 1.3.6+ds-1 [8198 B] 94s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libtirpc3t64 amd64 1.3.6+ds-1 [82.5 kB] 94s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB] 94s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 94s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-22ubuntu1 [11.9 MB] 95s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 cpp-14 amd64 14.2.0-22ubuntu1 [1030 B] 95s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 95s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 95s Get:15 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libcc1-0 amd64 15.1.0-1ubuntu1 [47.1 kB] 95s Get:16 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgomp1 amd64 15.1.0-1ubuntu1 [151 kB] 95s Get:17 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libitm1 amd64 15.1.0-1ubuntu1 [29.5 kB] 95s Get:18 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libasan8 amd64 15.1.0-1ubuntu1 [3072 kB] 95s Get:19 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 liblsan0 amd64 15.1.0-1ubuntu1 [1361 kB] 95s Get:20 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libtsan2 amd64 15.1.0-1ubuntu1 [2760 kB] 96s Get:21 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libubsan1 amd64 15.1.0-1ubuntu1 [1211 kB] 96s Get:22 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libhwasan0 amd64 15.1.0-1ubuntu1 [1686 kB] 96s Get:23 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libquadmath0 amd64 15.1.0-1ubuntu1 [153 kB] 96s Get:24 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgcc-14-dev amd64 14.2.0-22ubuntu1 [2815 kB] 96s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-22ubuntu1 [23.4 MB] 97s Get:26 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gcc-14 amd64 14.2.0-22ubuntu1 [547 kB] 97s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 97s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 97s Get:29 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libstdc++-14-dev amd64 14.2.0-22ubuntu1 [2826 kB] 97s Get:30 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-22ubuntu1 [13.4 MB] 97s Get:31 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 g++-14 amd64 14.2.0-22ubuntu1 [24.0 kB] 97s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 97s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 97s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 97s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 97s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 97s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 97s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 97s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 97s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB] 97s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 97s Get:42 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-4 [119 kB] 97s Get:43 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 97s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 97s Get:45 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgfortran5 amd64 15.1.0-1ubuntu1 [924 kB] 97s Get:46 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgfortran-14-dev amd64 14.2.0-22ubuntu1 [967 kB] 97s Get:47 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-22ubuntu1 [12.5 MB] 98s Get:48 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gfortran-14 amd64 14.2.0-22ubuntu1 [14.4 kB] 98s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 98s Get:50 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 98s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 98s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 javascript-common all 12 [5216 B] 98s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 98s Get:54 http://ftpmaster.internal/ubuntu questing/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 98s Get:55 http://ftpmaster.internal/ubuntu questing/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 98s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 98s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 98s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libboost1.83-dev amd64 1.83.0-4.2ubuntu1 [10.7 MB] 98s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 98s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 98s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 98s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 98s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 98s Get:64 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 98s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 98s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 98s Get:67 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 98s Get:68 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB] 98s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libgit2-1.9 amd64 1.9.0+ds-1ubuntu1 [688 kB] 98s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 98s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 98s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 98s Get:73 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 98s Get:74 http://ftpmaster.internal/ubuntu questing/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 98s Get:75 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 98s Get:76 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 98s Get:77 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 98s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 98s Get:79 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 98s Get:80 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 libjs-bootstrap all 3.4.1+dfsg-4 [129 kB] 98s Get:81 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 98s Get:82 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 98s Get:83 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 98s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 99s Get:85 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 99s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 99s Get:87 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 99s Get:88 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 99s Get:89 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 99s Get:90 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 99s Get:91 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 99s Get:92 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 99s Get:93 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 99s Get:94 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 99s Get:95 http://ftpmaster.internal/ubuntu questing/universe amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 99s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 99s Get:97 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 99s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 99s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 99s Get:100 http://ftpmaster.internal/ubuntu questing/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 99s Get:101 http://ftpmaster.internal/ubuntu questing/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 99s Get:102 http://ftpmaster.internal/ubuntu questing/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 99s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 99s Get:104 http://ftpmaster.internal/ubuntu questing/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB] 99s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB] 99s Get:106 http://ftpmaster.internal/ubuntu questing/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB] 99s Get:107 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 99s Get:108 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 99s Get:109 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 99s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 99s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 99s Get:112 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 100s Get:113 http://ftpmaster.internal/ubuntu questing/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 100s Get:114 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 100s Get:115 http://ftpmaster.internal/ubuntu questing/main amd64 libpng-dev amd64 1.6.47-1.1 [298 kB] 100s Get:116 http://ftpmaster.internal/ubuntu questing/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 100s Get:117 http://ftpmaster.internal/ubuntu questing/universe amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 100s Get:118 http://ftpmaster.internal/ubuntu questing/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 100s Get:119 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 100s Get:120 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 100s Get:121 http://ftpmaster.internal/ubuntu questing/universe amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 100s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 100s Get:123 http://ftpmaster.internal/ubuntu questing/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 100s Get:124 http://ftpmaster.internal/ubuntu questing/universe amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 100s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 100s Get:126 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 100s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 100s Get:128 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 100s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 100s Get:130 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 100s Get:131 http://ftpmaster.internal/ubuntu questing/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 100s Get:132 http://ftpmaster.internal/ubuntu questing/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 100s Get:133 http://ftpmaster.internal/ubuntu questing/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 100s Get:134 http://ftpmaster.internal/ubuntu questing/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 100s Get:135 http://ftpmaster.internal/ubuntu questing/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 100s Get:136 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [377 kB] 100s Get:137 http://ftpmaster.internal/ubuntu questing/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 100s Get:138 http://ftpmaster.internal/ubuntu questing/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 100s Get:139 http://ftpmaster.internal/ubuntu questing/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 100s Get:140 http://ftpmaster.internal/ubuntu questing/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 100s Get:141 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-core amd64 4.5.0-3 [28.9 MB] 101s Get:142 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-littler amd64 0.3.21-1 [99.3 kB] 101s Get:143 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 littler all 0.3.21-1 [2584 B] 101s Get:144 http://ftpmaster.internal/ubuntu questing/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 101s Get:145 http://ftpmaster.internal/ubuntu questing/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 101s Get:146 http://ftpmaster.internal/ubuntu questing/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 101s Get:147 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 101s Get:148 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 102s Get:149 http://ftpmaster.internal/ubuntu questing/main amd64 liblzma-dev amd64 5.6.4-1ubuntu1 [189 kB] 102s Get:150 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 102s Get:151 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 102s Get:152 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 102s Get:153 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-dev all 4.5.0-3 [4188 B] 102s Get:154 http://ftpmaster.internal/ubuntu questing/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 102s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 102s Get:156 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 102s Get:157 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocbaseutils all 1.8.0+dfsg-2 [43.6 kB] 102s Get:158 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 102s Get:159 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 102s Get:160 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 102s Get:161 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 102s Get:162 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 102s Get:163 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 102s Get:164 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 102s Get:165 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 102s Get:166 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 102s Get:167 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 102s Get:168 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 102s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 102s Get:170 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fansi amd64 1.0.6-1ubuntu1 [632 kB] 102s Get:171 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 102s Get:172 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 102s Get:173 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 102s Get:174 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 102s Get:175 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 102s Get:176 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 102s Get:177 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 102s Get:178 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 102s Get:179 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 102s Get:180 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 102s Get:181 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 102s Get:182 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 102s Get:183 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 102s Get:184 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 102s Get:185 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 102s Get:186 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 102s Get:187 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 102s Get:188 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 103s Get:189 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 103s Get:190 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 103s Get:191 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 103s Get:192 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 103s Get:193 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 103s Get:194 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 103s Get:195 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 103s Get:196 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 103s Get:197 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 103s Get:198 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 103s Get:199 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-bioc-graph amd64 1.84.1-2 [1298 kB] 103s Get:200 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 103s Get:201 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-rbgl amd64 1.82.0+dfsg-2 [588 kB] 103s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 103s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 103s Get:204 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 103s Get:205 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 103s Get:206 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocviews all 1.74.0-2 [670 kB] 104s Get:207 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 104s Get:208 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 104s Get:209 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 104s Get:210 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 104s Get:211 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 104s Get:212 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httr2 all 1.1.1-1 [752 kB] 104s Get:213 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 104s Get:214 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 104s Get:215 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 104s Get:216 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 104s Get:217 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 105s Get:218 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-knitr all 1.50+dfsg-1 [840 kB] 105s Get:219 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-selectr all 0.4-2-2build1 [416 kB] 105s Get:220 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xml2 amd64 1.3.8-1 [333 kB] 105s Get:221 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rvest all 1.0.4-1 [298 kB] 105s Get:222 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-stringdist amd64 0.9.15-1 [586 kB] 105s Get:223 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-bioc-bioccheck all 1.42.1+dfsg-2 [423 kB] 105s Get:224 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 105s Get:225 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 105s Get:226 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 105s Get:227 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 105s Get:228 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 105s Get:229 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 105s Get:230 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-bslib all 0.9.0+dfsg-3 [4562 kB] 106s Get:231 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 106s Get:232 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 106s Get:233 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 106s Get:234 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 106s Get:235 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 106s Get:236 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 106s Get:237 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 106s Get:238 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 106s Get:239 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 106s Get:240 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 106s Get:241 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 106s Get:242 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 106s Get:243 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 106s Get:244 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 106s Get:245 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 106s Get:246 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 106s Get:247 http://ftpmaster.internal/ubuntu questing/universe amd64 tex-common all 6.19 [29.8 kB] 106s Get:248 http://ftpmaster.internal/ubuntu questing/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 106s Get:249 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 107s Get:250 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-base all 2024.20250309-1 [22.7 MB] 108s Get:251 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-latex-base all 2024.20250309-1 [1276 kB] 108s Get:252 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-bibtex-extra all 2024.20250309-2 [79.3 MB] 113s Get:253 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 113s Get:254 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 113s Get:255 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-brew all 1.0-10-1 [77.7 kB] 113s Get:256 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 113s Get:257 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 113s Get:258 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-credentials all 2.0.2-1 [208 kB] 113s Get:259 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 113s Get:260 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rstudioapi all 0.17.1-1 [299 kB] 113s Get:261 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-zip amd64 2.3.2-1 [156 kB] 113s Get:262 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-gert amd64 2.1.4+dfsg-1build1 [241 kB] 113s Get:263 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-gitcreds all 0.1.2-1 [93.5 kB] 113s Get:264 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-ini all 0.3.1-2build1 [15.8 kB] 113s Get:265 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-gh all 1.4.1-1 [126 kB] 113s Get:266 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 113s Get:267 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-whisker all 0.4.1-1 [62.7 kB] 113s Get:268 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-usethis all 3.1.0-1 [935 kB] 113s Get:269 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 113s Get:270 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 113s Get:271 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 113s Get:272 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-downlit all 0.4.4-1 [126 kB] 113s Get:273 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 113s Get:274 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-textshaping amd64 0.3.7-2 [95.5 kB] 113s Get:275 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-ragg amd64 1.3.3-1 [510 kB] 113s Get:276 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootswatch all 3.3.7+dfsg2-1.1 [133 kB] 113s Get:277 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgdown all 2.1.1-2 [1341 kB] 113s Get:278 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 113s Get:279 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 113s Get:280 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-profvis amd64 0.4.0+dfsg-1 [206 kB] 113s Get:281 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 113s Get:282 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sessioninfo all 1.2.3-1 [280 kB] 113s Get:283 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xopen all 1.0.1+dfsg-1 [21.7 kB] 113s Get:284 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-rcmdcheck all 1.4.0-4 [209 kB] 113s Get:285 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-remotes all 2.5.0+dfsg-1 [447 kB] 113s Get:286 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-roxygen2 amd64 7.3.2-1 [723 kB] 113s Get:287 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rversions all 2.1.2-1 [59.4 kB] 113s Get:288 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 113s Get:289 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 113s Get:290 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 113s Get:291 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 113s Get:292 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-urlchecker all 1.0.1-2 [34.0 kB] 113s Get:293 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-devtools all 2.4.5-1 [676 kB] 113s Get:294 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tinytest all 1.4.1-1 [674 kB] 113s Get:295 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 zstd amd64 1.5.7+dfsg-1 [672 kB] 114s Preconfiguring packages ... 114s Fetched 380 MB in 20s (18.9 MB/s) 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 115s Preparing to unpack .../gcc-15-base_15.1.0-1ubuntu1_amd64.deb ... 115s Unpacking gcc-15-base:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ... 115s Setting up gcc-15-base:amd64 (15.1.0-1ubuntu1) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 115s Preparing to unpack .../libgcc-s1_15.1.0-1ubuntu1_amd64.deb ... 115s Unpacking libgcc-s1:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ... 115s Setting up libgcc-s1:amd64 (15.1.0-1ubuntu1) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 115s Preparing to unpack .../libatomic1_15.1.0-1ubuntu1_amd64.deb ... 115s Unpacking libatomic1:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ... 115s Preparing to unpack .../libstdc++6_15.1.0-1ubuntu1_amd64.deb ... 115s Unpacking libstdc++6:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ... 115s Setting up libstdc++6:amd64 (15.1.0-1ubuntu1) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 115s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_amd64.deb ... 115s Unpacking libzstd1:amd64 (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 115s Setting up libzstd1:amd64 (1.5.7+dfsg-1) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 115s Preparing to unpack .../000-gcc-14-base_14.2.0-22ubuntu1_amd64.deb ... 115s Unpacking gcc-14-base:amd64 (14.2.0-22ubuntu1) over (14.2.0-19ubuntu2) ... 115s Preparing to unpack .../001-libtirpc-common_1.3.6+ds-1_all.deb ... 115s Unpacking libtirpc-common (1.3.6+ds-1) over (1.3.4+ds-1.3) ... 115s Preparing to unpack .../002-libtirpc3t64_1.3.6+ds-1_amd64.deb ... 115s Unpacking libtirpc3t64:amd64 (1.3.6+ds-1) over (1.3.4+ds-1.3) ... 115s Selecting previously unselected package libisl23:amd64. 115s Preparing to unpack .../003-libisl23_0.27-1_amd64.deb ... 115s Unpacking libisl23:amd64 (0.27-1) ... 115s Selecting previously unselected package libmpc3:amd64. 115s Preparing to unpack .../004-libmpc3_1.3.1-1build2_amd64.deb ... 115s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 115s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 115s Preparing to unpack .../005-cpp-14-x86-64-linux-gnu_14.2.0-22ubuntu1_amd64.deb ... 115s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 115s Selecting previously unselected package cpp-14. 115s Preparing to unpack .../006-cpp-14_14.2.0-22ubuntu1_amd64.deb ... 115s Unpacking cpp-14 (14.2.0-22ubuntu1) ... 115s Selecting previously unselected package cpp-x86-64-linux-gnu. 115s Preparing to unpack .../007-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 115s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 115s Selecting previously unselected package cpp. 115s Preparing to unpack .../008-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 115s Unpacking cpp (4:14.2.0-1ubuntu1) ... 115s Selecting previously unselected package libcc1-0:amd64. 115s Preparing to unpack .../009-libcc1-0_15.1.0-1ubuntu1_amd64.deb ... 115s Unpacking libcc1-0:amd64 (15.1.0-1ubuntu1) ... 115s Selecting previously unselected package libgomp1:amd64. 115s Preparing to unpack .../010-libgomp1_15.1.0-1ubuntu1_amd64.deb ... 115s Unpacking libgomp1:amd64 (15.1.0-1ubuntu1) ... 115s Selecting previously unselected package libitm1:amd64. 115s Preparing to unpack .../011-libitm1_15.1.0-1ubuntu1_amd64.deb ... 115s Unpacking libitm1:amd64 (15.1.0-1ubuntu1) ... 116s Selecting previously unselected package libasan8:amd64. 116s Preparing to unpack .../012-libasan8_15.1.0-1ubuntu1_amd64.deb ... 116s Unpacking libasan8:amd64 (15.1.0-1ubuntu1) ... 116s Selecting previously unselected package liblsan0:amd64. 116s Preparing to unpack .../013-liblsan0_15.1.0-1ubuntu1_amd64.deb ... 116s Unpacking liblsan0:amd64 (15.1.0-1ubuntu1) ... 116s Selecting previously unselected package libtsan2:amd64. 116s Preparing to unpack .../014-libtsan2_15.1.0-1ubuntu1_amd64.deb ... 116s Unpacking libtsan2:amd64 (15.1.0-1ubuntu1) ... 116s Selecting previously unselected package libubsan1:amd64. 116s Preparing to unpack .../015-libubsan1_15.1.0-1ubuntu1_amd64.deb ... 116s Unpacking libubsan1:amd64 (15.1.0-1ubuntu1) ... 116s Selecting previously unselected package libhwasan0:amd64. 116s Preparing to unpack .../016-libhwasan0_15.1.0-1ubuntu1_amd64.deb ... 116s Unpacking libhwasan0:amd64 (15.1.0-1ubuntu1) ... 116s Selecting previously unselected package libquadmath0:amd64. 116s Preparing to unpack .../017-libquadmath0_15.1.0-1ubuntu1_amd64.deb ... 116s Unpacking libquadmath0:amd64 (15.1.0-1ubuntu1) ... 116s Selecting previously unselected package libgcc-14-dev:amd64. 116s Preparing to unpack .../018-libgcc-14-dev_14.2.0-22ubuntu1_amd64.deb ... 116s Unpacking libgcc-14-dev:amd64 (14.2.0-22ubuntu1) ... 116s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 116s Preparing to unpack .../019-gcc-14-x86-64-linux-gnu_14.2.0-22ubuntu1_amd64.deb ... 116s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 116s Selecting previously unselected package gcc-14. 116s Preparing to unpack .../020-gcc-14_14.2.0-22ubuntu1_amd64.deb ... 116s Unpacking gcc-14 (14.2.0-22ubuntu1) ... 116s Selecting previously unselected package gcc-x86-64-linux-gnu. 116s Preparing to unpack .../021-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 116s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 116s Selecting previously unselected package gcc. 116s Preparing to unpack .../022-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 116s Unpacking gcc (4:14.2.0-1ubuntu1) ... 116s Selecting previously unselected package libstdc++-14-dev:amd64. 116s Preparing to unpack .../023-libstdc++-14-dev_14.2.0-22ubuntu1_amd64.deb ... 116s Unpacking libstdc++-14-dev:amd64 (14.2.0-22ubuntu1) ... 117s Selecting previously unselected package g++-14-x86-64-linux-gnu. 117s Preparing to unpack .../024-g++-14-x86-64-linux-gnu_14.2.0-22ubuntu1_amd64.deb ... 117s Unpacking g++-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 117s Selecting previously unselected package g++-14. 117s Preparing to unpack .../025-g++-14_14.2.0-22ubuntu1_amd64.deb ... 117s Unpacking g++-14 (14.2.0-22ubuntu1) ... 117s Selecting previously unselected package g++-x86-64-linux-gnu. 117s Preparing to unpack .../026-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 117s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 117s Selecting previously unselected package g++. 117s Preparing to unpack .../027-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 117s Unpacking g++ (4:14.2.0-1ubuntu1) ... 117s Selecting previously unselected package build-essential. 117s Preparing to unpack .../028-build-essential_12.12ubuntu1_amd64.deb ... 117s Unpacking build-essential (12.12ubuntu1) ... 117s Selecting previously unselected package dctrl-tools. 117s Preparing to unpack .../029-dctrl-tools_2.24-3build3_amd64.deb ... 117s Unpacking dctrl-tools (2.24-3build3) ... 117s Selecting previously unselected package fonts-dejavu-mono. 117s Preparing to unpack .../030-fonts-dejavu-mono_2.37-8_all.deb ... 117s Unpacking fonts-dejavu-mono (2.37-8) ... 117s Selecting previously unselected package fonts-dejavu-core. 117s Preparing to unpack .../031-fonts-dejavu-core_2.37-8_all.deb ... 117s Unpacking fonts-dejavu-core (2.37-8) ... 117s Selecting previously unselected package fontconfig-config. 117s Preparing to unpack .../032-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 117s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 117s Selecting previously unselected package libfontconfig1:amd64. 117s Preparing to unpack .../033-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 117s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 117s Selecting previously unselected package fontconfig. 117s Preparing to unpack .../034-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ... 117s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 117s Selecting previously unselected package fonts-font-awesome. 117s Preparing to unpack .../035-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 117s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 117s Selecting previously unselected package fonts-glyphicons-halflings. 117s Preparing to unpack .../036-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-4_all.deb ... 117s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-4) ... 117s Selecting previously unselected package fonts-lmodern. 117s Preparing to unpack .../037-fonts-lmodern_2.005-1_all.deb ... 117s Unpacking fonts-lmodern (2.005-1) ... 118s Selecting previously unselected package fonts-mathjax. 118s Preparing to unpack .../038-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 118s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 118s Selecting previously unselected package libgfortran5:amd64. 118s Preparing to unpack .../039-libgfortran5_15.1.0-1ubuntu1_amd64.deb ... 118s Unpacking libgfortran5:amd64 (15.1.0-1ubuntu1) ... 118s Selecting previously unselected package libgfortran-14-dev:amd64. 118s Preparing to unpack .../040-libgfortran-14-dev_14.2.0-22ubuntu1_amd64.deb ... 118s Unpacking libgfortran-14-dev:amd64 (14.2.0-22ubuntu1) ... 118s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 118s Preparing to unpack .../041-gfortran-14-x86-64-linux-gnu_14.2.0-22ubuntu1_amd64.deb ... 118s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-22ubuntu1) ... 118s Selecting previously unselected package gfortran-14. 118s Preparing to unpack .../042-gfortran-14_14.2.0-22ubuntu1_amd64.deb ... 118s Unpacking gfortran-14 (14.2.0-22ubuntu1) ... 118s Selecting previously unselected package gfortran-x86-64-linux-gnu. 118s Preparing to unpack .../043-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 118s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 118s Selecting previously unselected package gfortran. 118s Preparing to unpack .../044-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 118s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 118s Selecting previously unselected package icu-devtools. 118s Preparing to unpack .../045-icu-devtools_76.1-1ubuntu2_amd64.deb ... 118s Unpacking icu-devtools (76.1-1ubuntu2) ... 118s Selecting previously unselected package javascript-common. 118s Preparing to unpack .../046-javascript-common_12_all.deb ... 118s Unpacking javascript-common (12) ... 118s Selecting previously unselected package libio-string-perl. 118s Preparing to unpack .../047-libio-string-perl_1.08-4_all.deb ... 118s Unpacking libio-string-perl (1.08-4) ... 118s Selecting previously unselected package liblatex-tounicode-perl. 118s Preparing to unpack .../048-liblatex-tounicode-perl_0.55-1_all.deb ... 118s Unpacking liblatex-tounicode-perl (0.55-1) ... 118s Selecting previously unselected package libbibtex-parser-perl. 118s Preparing to unpack .../049-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 118s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 118s Selecting previously unselected package libblas3:amd64. 118s Preparing to unpack .../050-libblas3_3.12.1-2_amd64.deb ... 118s Unpacking libblas3:amd64 (3.12.1-2) ... 118s Selecting previously unselected package libblas-dev:amd64. 118s Preparing to unpack .../051-libblas-dev_3.12.1-2_amd64.deb ... 118s Unpacking libblas-dev:amd64 (3.12.1-2) ... 118s Selecting previously unselected package libboost1.83-dev:amd64. 118s Preparing to unpack .../052-libboost1.83-dev_1.83.0-4.2ubuntu1_amd64.deb ... 118s Unpacking libboost1.83-dev:amd64 (1.83.0-4.2ubuntu1) ... 120s Selecting previously unselected package libboost-dev:amd64. 120s Preparing to unpack .../053-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 120s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 120s Selecting previously unselected package libbz2-dev:amd64. 120s Preparing to unpack .../054-libbz2-dev_1.0.8-6_amd64.deb ... 120s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 120s Selecting previously unselected package libpixman-1-0:amd64. 120s Preparing to unpack .../055-libpixman-1-0_0.44.0-3_amd64.deb ... 120s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 120s Selecting previously unselected package libxcb-render0:amd64. 120s Preparing to unpack .../056-libxcb-render0_1.17.0-2_amd64.deb ... 120s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 120s Selecting previously unselected package libxcb-shm0:amd64. 120s Preparing to unpack .../057-libxcb-shm0_1.17.0-2_amd64.deb ... 120s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 120s Selecting previously unselected package libxrender1:amd64. 120s Preparing to unpack .../058-libxrender1_1%3a0.9.12-1_amd64.deb ... 120s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 120s Selecting previously unselected package libcairo2:amd64. 120s Preparing to unpack .../059-libcairo2_1.18.4-1_amd64.deb ... 120s Unpacking libcairo2:amd64 (1.18.4-1) ... 120s Selecting previously unselected package libdatrie1:amd64. 120s Preparing to unpack .../060-libdatrie1_0.2.13-3build1_amd64.deb ... 120s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 120s Selecting previously unselected package libdeflate0:amd64. 120s Preparing to unpack .../061-libdeflate0_1.23-2_amd64.deb ... 120s Unpacking libdeflate0:amd64 (1.23-2) ... 120s Selecting previously unselected package libdeflate-dev:amd64. 120s Preparing to unpack .../062-libdeflate-dev_1.23-2_amd64.deb ... 120s Unpacking libdeflate-dev:amd64 (1.23-2) ... 120s Selecting previously unselected package libgit2-1.9:amd64. 120s Preparing to unpack .../063-libgit2-1.9_1.9.0+ds-1ubuntu1_amd64.deb ... 120s Unpacking libgit2-1.9:amd64 (1.9.0+ds-1ubuntu1) ... 120s Selecting previously unselected package libgraphite2-3:amd64. 120s Preparing to unpack .../064-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 120s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 120s Selecting previously unselected package libharfbuzz0b:amd64. 120s Preparing to unpack .../065-libharfbuzz0b_10.2.0-1_amd64.deb ... 120s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 120s Selecting previously unselected package x11-common. 120s Preparing to unpack .../066-x11-common_1%3a7.7+23ubuntu4_all.deb ... 121s Unpacking x11-common (1:7.7+23ubuntu4) ... 121s Selecting previously unselected package libice6:amd64. 121s Preparing to unpack .../067-libice6_2%3a1.1.1-1_amd64.deb ... 121s Unpacking libice6:amd64 (2:1.1.1-1) ... 121s Selecting previously unselected package libicu-dev:amd64. 121s Preparing to unpack .../068-libicu-dev_76.1-1ubuntu2_amd64.deb ... 121s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 121s Selecting previously unselected package libjpeg-turbo8:amd64. 121s Preparing to unpack .../069-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 121s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 121s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 121s Preparing to unpack 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libjs-jquery-datatables. 121s Preparing to unpack .../081-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 121s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 121s Selecting previously unselected package libjs-sifter.js. 121s Preparing to unpack .../082-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 121s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 121s Selecting previously unselected package libjs-microplugin.js. 121s Preparing to unpack .../083-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 121s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 121s Selecting previously unselected package libjs-jquery-selectize.js. 121s Preparing to unpack .../084-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 121s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 121s Selecting previously unselected package libjs-jquery-ui. 121s Preparing to unpack .../085-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 121s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 122s Selecting previously unselected package libjs-json. 122s Preparing to unpack .../086-libjs-json_0~20221030+~1.0.8-1_all.deb ... 122s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 122s Selecting previously unselected package libjs-lunr. 122s Preparing to unpack .../087-libjs-lunr_2.3.9~dfsg-2_all.deb ... 122s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 122s Selecting previously unselected package libjs-prettify. 122s Preparing to unpack .../088-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 122s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 122s Selecting previously unselected package libkpathsea6:amd64. 122s Preparing to unpack .../089-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 122s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 122s Selecting previously unselected package liblapack3:amd64. 122s Preparing to unpack .../090-liblapack3_3.12.1-2_amd64.deb ... 122s Unpacking liblapack3:amd64 (3.12.1-2) ... 122s Selecting previously unselected package liblapack-dev:amd64. 122s Preparing to unpack .../091-liblapack-dev_3.12.1-2_amd64.deb ... 122s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 122s Selecting previously unselected package liblerc4:amd64. 122s Preparing to unpack .../092-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 122s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 122s Selecting previously unselected package liblua5.4-0:amd64. 122s Preparing to unpack .../093-liblua5.4-0_5.4.7-1_amd64.deb ... 122s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 122s Selecting previously unselected package libmpfi0:amd64. 122s Preparing to unpack .../094-libmpfi0_1.5.4+ds-4_amd64.deb ... 122s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 122s Selecting previously unselected package libncurses-dev:amd64. 122s Preparing to unpack .../095-libncurses-dev_6.5+20250216-2_amd64.deb ... 122s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 122s Selecting previously unselected package libthai-data. 122s Preparing to unpack .../096-libthai-data_0.1.29-2build1_all.deb ... 122s Unpacking libthai-data (0.1.29-2build1) ... 122s Selecting previously unselected package libthai0:amd64. 122s Preparing to unpack .../097-libthai0_0.1.29-2build1_amd64.deb ... 122s Unpacking libthai0:amd64 (0.1.29-2build1) ... 122s Selecting previously unselected package libpango-1.0-0:amd64. 122s Preparing to unpack .../098-libpango-1.0-0_1.56.3-1_amd64.deb ... 122s Unpacking libpango-1.0-0:amd64 (1.56.3-1) ... 122s Selecting previously unselected package libpangoft2-1.0-0:amd64. 122s Preparing to unpack .../099-libpangoft2-1.0-0_1.56.3-1_amd64.deb ... 122s Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ... 122s Selecting previously unselected package libpangocairo-1.0-0:amd64. 122s Preparing to unpack .../100-libpangocairo-1.0-0_1.56.3-1_amd64.deb ... 122s Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ... 122s Selecting previously unselected package libpaper2:amd64. 122s Preparing to unpack .../101-libpaper2_2.2.5-0.3_amd64.deb ... 122s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 122s Selecting previously unselected package libpaper-utils. 122s Preparing to unpack .../102-libpaper-utils_2.2.5-0.3_amd64.deb ... 122s Unpacking libpaper-utils (2.2.5-0.3) ... 122s Selecting previously unselected package libpcre2-16-0:amd64. 122s Preparing to unpack .../103-libpcre2-16-0_10.45-1_amd64.deb ... 122s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 122s Selecting previously unselected package libpcre2-32-0:amd64. 122s Preparing to unpack .../104-libpcre2-32-0_10.45-1_amd64.deb ... 122s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 122s Selecting previously unselected package libpcre2-posix3:amd64. 122s Preparing to unpack .../105-libpcre2-posix3_10.45-1_amd64.deb ... 122s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 122s Selecting previously unselected package libpcre2-dev:amd64. 122s Preparing to unpack .../106-libpcre2-dev_10.45-1_amd64.deb ... 122s Unpacking libpcre2-dev:amd64 (10.45-1) ... 122s Selecting previously unselected package libpkgconf3:amd64. 122s Preparing to unpack .../107-libpkgconf3_1.8.1-4_amd64.deb ... 122s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 122s Selecting previously unselected package zlib1g-dev:amd64. 122s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 122s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 123s Selecting previously unselected package libpng-dev:amd64. 123s Preparing to unpack .../109-libpng-dev_1.6.47-1.1_amd64.deb ... 123s Unpacking libpng-dev:amd64 (1.6.47-1.1) ... 123s Selecting previously unselected package libpotrace0:amd64. 123s Preparing to unpack .../110-libpotrace0_1.16-2build1_amd64.deb ... 123s Unpacking libpotrace0:amd64 (1.16-2build1) ... 123s Selecting previously unselected package libptexenc1:amd64. 123s Preparing to unpack .../111-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 123s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 123s Selecting previously unselected package libreadline-dev:amd64. 123s Preparing to unpack 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libteckit0:amd64 (2.5.12+ds1-1) ... 123s Selecting previously unselected package libtexlua53-5:amd64. 123s Preparing to unpack .../118-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 123s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 123s Selecting previously unselected package libjbig0:amd64. 123s Preparing to unpack .../119-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 123s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 123s Selecting previously unselected package libwebp7:amd64. 123s Preparing to unpack .../120-libwebp7_1.5.0-0.1_amd64.deb ... 123s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 123s Selecting previously unselected package libtiff6:amd64. 123s Preparing to unpack .../121-libtiff6_4.7.0-3ubuntu1_amd64.deb ... 123s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ... 123s Selecting previously unselected package libxft2:amd64. 123s Preparing to unpack .../122-libxft2_2.3.6-1build1_amd64.deb ... 123s Unpacking libxft2:amd64 (2.3.6-1build1) ... 123s Selecting previously unselected package libxss1:amd64. 123s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build3_amd64.deb ... 123s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 123s Selecting previously unselected package libtk8.6:amd64. 123s Preparing to unpack .../124-libtk8.6_8.6.16-1_amd64.deb ... 123s Unpacking libtk8.6:amd64 (8.6.16-1) ... 123s Selecting previously unselected package libxt6t64:amd64. 123s Preparing to unpack .../125-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 123s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 123s Selecting previously unselected package libxmu6:amd64. 123s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 123s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 123s Selecting previously unselected package libxpm4:amd64. 123s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 123s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 123s Selecting previously unselected package libxaw7:amd64. 123s Preparing to unpack .../128-libxaw7_2%3a1.0.16-1_amd64.deb ... 123s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 123s Selecting previously unselected package libxi6:amd64. 123s Preparing to unpack .../129-libxi6_2%3a1.8.2-1_amd64.deb ... 123s Unpacking libxi6:amd64 (2:1.8.2-1) ... 123s Selecting previously unselected package libzstd-dev:amd64. 123s Preparing to unpack .../130-libzstd-dev_1.5.7+dfsg-1_amd64.deb ... 123s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-1) ... 123s Selecting previously unselected package libzzip-0-13t64:amd64. 123s Preparing to unpack .../131-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 123s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 123s Selecting previously unselected package zip. 123s Preparing to unpack .../132-zip_3.0-14ubuntu2_amd64.deb ... 123s Unpacking zip (3.0-14ubuntu2) ... 123s Selecting previously unselected package unzip. 123s Preparing to unpack .../133-unzip_6.0-28ubuntu6_amd64.deb ... 123s Unpacking unzip (6.0-28ubuntu6) ... 124s Selecting previously unselected package xdg-utils. 124s Preparing to unpack .../134-xdg-utils_1.2.1-2ubuntu1_all.deb ... 124s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 124s Selecting previously unselected package r-base-core. 124s Preparing to unpack .../135-r-base-core_4.5.0-3_amd64.deb ... 124s Unpacking r-base-core (4.5.0-3) ... 124s Selecting previously unselected package r-cran-littler. 124s Preparing to unpack .../136-r-cran-littler_0.3.21-1_amd64.deb ... 124s Unpacking r-cran-littler (0.3.21-1) ... 124s Selecting previously unselected package littler. 124s Preparing to unpack .../137-littler_0.3.21-1_all.deb ... 124s Unpacking littler (0.3.21-1) ... 124s Selecting previously unselected package node-bootstrap-sass. 124s Preparing to unpack .../138-node-bootstrap-sass_3.4.3-2_all.deb ... 124s Unpacking node-bootstrap-sass (3.4.3-2) ... 124s Selecting previously unselected package node-html5shiv. 124s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ... 124s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 124s Selecting previously unselected package node-normalize.css. 124s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ... 124s Unpacking node-normalize.css (8.0.1-5) ... 124s Selecting previously unselected package pandoc-data. 124s Preparing to unpack .../141-pandoc-data_3.1.11.1-3build1_all.deb ... 124s Unpacking pandoc-data (3.1.11.1-3build1) ... 124s Selecting previously unselected package pandoc. 124s Preparing to unpack .../142-pandoc_3.1.11.1+ds-2_amd64.deb ... 124s Unpacking pandoc (3.1.11.1+ds-2) ... 125s Selecting previously unselected package liblzma-dev:amd64. 125s Preparing to unpack .../143-liblzma-dev_5.6.4-1ubuntu1_amd64.deb ... 125s Unpacking liblzma-dev:amd64 (5.6.4-1ubuntu1) ... 125s Selecting previously unselected package pkgconf-bin. 125s Preparing to unpack .../144-pkgconf-bin_1.8.1-4_amd64.deb ... 125s Unpacking pkgconf-bin (1.8.1-4) ... 125s Selecting previously unselected package pkgconf:amd64. 125s Preparing to unpack .../145-pkgconf_1.8.1-4_amd64.deb ... 125s Unpacking pkgconf:amd64 (1.8.1-4) ... 125s Selecting previously unselected package libtirpc-dev:amd64. 125s Preparing to unpack .../146-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 125s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 125s Selecting previously unselected package r-base-dev. 125s Preparing to unpack .../147-r-base-dev_4.5.0-3_all.deb ... 125s Unpacking r-base-dev (4.5.0-3) ... 125s Selecting previously unselected package pkg-r-autopkgtest. 125s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 125s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 125s Selecting previously unselected package r-bioc-biocgenerics. 125s Preparing to unpack .../149-r-bioc-biocgenerics_0.52.0-2_all.deb ... 125s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 125s Selecting previously unselected package r-bioc-biobase. 125s Preparing to unpack .../150-r-bioc-biobase_2.66.0-2_amd64.deb ... 125s Unpacking r-bioc-biobase (2.66.0-2) ... 125s Selecting previously unselected package r-bioc-biocbaseutils. 125s Preparing to unpack .../151-r-bioc-biocbaseutils_1.8.0+dfsg-2_all.deb ... 125s Unpacking r-bioc-biocbaseutils (1.8.0+dfsg-2) ... 125s Selecting previously unselected package r-cran-rlang. 125s Preparing to unpack .../152-r-cran-rlang_1.1.5-3_amd64.deb ... 125s Unpacking r-cran-rlang (1.1.5-3) ... 125s Selecting previously unselected package r-cran-cli. 125s Preparing to unpack .../153-r-cran-cli_3.6.4-1_amd64.deb ... 125s Unpacking r-cran-cli (3.6.4-1) ... 125s Selecting previously unselected package r-cran-glue. 125s Preparing to unpack .../154-r-cran-glue_1.8.0-1_amd64.deb ... 125s Unpacking r-cran-glue (1.8.0-1) ... 125s Selecting previously unselected package r-cran-lifecycle. 125s Preparing to unpack .../155-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 125s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 125s Selecting previously unselected package r-cran-vctrs. 125s Preparing to unpack .../156-r-cran-vctrs_0.6.5-1_amd64.deb ... 125s Unpacking r-cran-vctrs (0.6.5-1) ... 126s Selecting previously unselected package r-cran-blob. 126s Preparing to unpack .../157-r-cran-blob_1.2.4-1_all.deb ... 126s Unpacking r-cran-blob (1.2.4-1) ... 126s Selecting previously unselected package r-cran-dbi. 126s Preparing to unpack .../158-r-cran-dbi_1.2.3-1_all.deb ... 126s Unpacking r-cran-dbi (1.2.3-1) ... 126s Selecting previously unselected package r-cran-generics. 126s Preparing to unpack .../159-r-cran-generics_0.1.3-1_all.deb ... 126s Unpacking r-cran-generics (0.1.3-1) ... 126s Selecting previously unselected package r-cran-magrittr. 126s Preparing to unpack .../160-r-cran-magrittr_2.0.3-1_amd64.deb ... 126s Unpacking r-cran-magrittr (2.0.3-1) ... 126s Selecting previously unselected package r-cran-utf8. 126s Preparing to unpack .../161-r-cran-utf8_1.2.4-1_amd64.deb ... 126s Unpacking r-cran-utf8 (1.2.4-1) ... 126s Selecting previously unselected package r-cran-pillar. 126s Preparing to unpack .../162-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 126s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 126s Selecting previously unselected package r-cran-r6. 126s Preparing to unpack .../163-r-cran-r6_2.6.1-1_all.deb ... 126s Unpacking r-cran-r6 (2.6.1-1) ... 126s Selecting previously unselected package r-cran-fansi. 126s Preparing to unpack .../164-r-cran-fansi_1.0.6-1ubuntu1_amd64.deb ... 126s Unpacking r-cran-fansi (1.0.6-1ubuntu1) ... 126s Selecting previously unselected package r-cran-pkgconfig. 126s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 126s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 126s Selecting previously unselected package r-cran-tibble. 126s Preparing to unpack .../166-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 126s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 126s Selecting previously unselected package r-cran-withr. 126s Preparing to unpack .../167-r-cran-withr_3.0.2+dfsg-1_all.deb ... 126s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 126s Selecting previously unselected package r-cran-tidyselect. 126s Preparing to unpack .../168-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 126s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 126s Selecting previously unselected package r-cran-dplyr. 126s Preparing to unpack .../169-r-cran-dplyr_1.1.4-4_amd64.deb ... 126s Unpacking r-cran-dplyr (1.1.4-4) ... 126s Selecting previously unselected package r-cran-purrr. 126s Preparing to unpack .../170-r-cran-purrr_1.0.4-1_amd64.deb ... 126s Unpacking r-cran-purrr (1.0.4-1) ... 126s Selecting previously unselected package r-cran-stringi. 126s Preparing to unpack .../171-r-cran-stringi_1.8.4-1build1_amd64.deb ... 126s Unpacking r-cran-stringi (1.8.4-1build1) ... 126s Selecting previously unselected package r-cran-stringr. 126s Preparing to unpack .../172-r-cran-stringr_1.5.1-1_all.deb ... 126s Unpacking r-cran-stringr (1.5.1-1) ... 126s Selecting previously unselected package r-cran-cpp11. 126s Preparing to unpack .../173-r-cran-cpp11_0.5.2-1_all.deb ... 126s Unpacking r-cran-cpp11 (0.5.2-1) ... 126s Selecting previously unselected package r-cran-tidyr. 126s Preparing to unpack .../174-r-cran-tidyr_1.3.1-1_amd64.deb ... 126s Unpacking r-cran-tidyr (1.3.1-1) ... 126s Selecting previously unselected package r-cran-dbplyr. 126s Preparing to unpack .../175-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 126s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 126s Selecting previously unselected package r-cran-bit. 126s Preparing to unpack .../176-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 126s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 126s Selecting previously unselected package r-cran-bit64. 126s Preparing to unpack .../177-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 126s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 126s Selecting previously unselected package r-cran-fastmap. 126s Preparing to unpack .../178-r-cran-fastmap_1.2.0-1_amd64.deb ... 126s Unpacking r-cran-fastmap (1.2.0-1) ... 126s Selecting previously unselected package r-cran-cachem. 126s Preparing to unpack .../179-r-cran-cachem_1.1.0-1_amd64.deb ... 126s Unpacking r-cran-cachem (1.1.0-1) ... 126s Selecting previously unselected package r-cran-memoise. 126s Preparing to unpack .../180-r-cran-memoise_2.0.1-1_all.deb ... 126s Unpacking r-cran-memoise (2.0.1-1) ... 126s Selecting previously unselected package r-cran-plogr. 126s Preparing to unpack .../181-r-cran-plogr_0.2.0-3build1_all.deb ... 126s Unpacking r-cran-plogr (0.2.0-3build1) ... 127s Selecting previously unselected package r-cran-rsqlite. 127s Preparing to unpack .../182-r-cran-rsqlite_2.3.9-1_amd64.deb ... 127s Unpacking r-cran-rsqlite (2.3.9-1) ... 127s Selecting previously unselected package r-cran-filelock. 127s Preparing to unpack .../183-r-cran-filelock_1.0.3-1_amd64.deb ... 127s Unpacking r-cran-filelock (1.0.3-1) ... 127s Selecting previously unselected package r-cran-curl. 127s Preparing to unpack .../184-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 127s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 127s Selecting previously unselected package r-cran-jsonlite. 127s Preparing to unpack .../185-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 127s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 127s Selecting previously unselected package r-cran-mime. 127s Preparing to unpack .../186-r-cran-mime_0.12-2_amd64.deb ... 127s Unpacking r-cran-mime (0.12-2) ... 127s Selecting previously unselected package r-cran-sys. 127s Preparing to unpack .../187-r-cran-sys_3.4.3-1_amd64.deb ... 127s Unpacking r-cran-sys (3.4.3-1) ... 127s Selecting previously unselected package r-cran-askpass. 127s Preparing to unpack .../188-r-cran-askpass_1.2.1-1_amd64.deb ... 127s Unpacking r-cran-askpass (1.2.1-1) ... 127s Selecting previously unselected package r-cran-openssl. 127s Preparing to unpack .../189-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 127s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 127s Selecting previously unselected package r-cran-httr. 127s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 127s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 127s Selecting previously unselected package r-bioc-biocfilecache. 127s Preparing to unpack .../191-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 127s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 127s Selecting previously unselected package r-cran-biocmanager. 127s Preparing to unpack .../192-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 127s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 127s Selecting previously unselected package r-bioc-graph. 127s Preparing to unpack .../193-r-bioc-graph_1.84.1-2_amd64.deb ... 127s Unpacking r-bioc-graph (1.84.1-2) ... 127s Selecting previously unselected package r-cran-bh. 127s Preparing to unpack .../194-r-cran-bh_1.84.0-1_all.deb ... 127s Unpacking r-cran-bh (1.84.0-1) ... 127s Selecting previously unselected package r-bioc-rbgl. 127s Preparing to unpack .../195-r-bioc-rbgl_1.82.0+dfsg-2_amd64.deb ... 127s Unpacking r-bioc-rbgl (1.82.0+dfsg-2) ... 127s Selecting previously unselected package r-cran-xml. 127s Preparing to unpack .../196-r-cran-xml_3.99-0.18-1_amd64.deb ... 127s Unpacking r-cran-xml (3.99-0.18-1) ... 127s Selecting previously unselected package r-cran-bitops. 127s Preparing to unpack .../197-r-cran-bitops_1.0-9-1_amd64.deb ... 127s Unpacking r-cran-bitops (1.0-9-1) ... 127s Selecting previously unselected package r-cran-rcurl. 127s Preparing to unpack .../198-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 127s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 127s Selecting previously unselected package r-cran-runit. 127s Preparing to unpack .../199-r-cran-runit_0.4.33-1_all.deb ... 127s Unpacking r-cran-runit (0.4.33-1) ... 127s Selecting previously unselected package r-bioc-biocviews. 127s Preparing to unpack .../200-r-bioc-biocviews_1.74.0-2_all.deb ... 127s Unpacking r-bioc-biocviews (1.74.0-2) ... 127s Selecting previously unselected package r-cran-ps. 127s Preparing to unpack .../201-r-cran-ps_1.9.0-1_amd64.deb ... 127s Unpacking r-cran-ps (1.9.0-1) ... 127s Selecting previously unselected package r-cran-processx. 127s Preparing to unpack .../202-r-cran-processx_3.8.6-1_amd64.deb ... 127s Unpacking r-cran-processx (3.8.6-1) ... 127s Selecting previously unselected package r-cran-callr. 127s Preparing to unpack .../203-r-cran-callr_3.7.6-1_all.deb ... 127s Unpacking r-cran-callr (3.7.6-1) ... 127s Selecting previously unselected package r-cran-codetools. 127s Preparing to unpack .../204-r-cran-codetools_0.2-20-1_all.deb ... 127s Unpacking r-cran-codetools (0.2-20-1) ... 128s Selecting previously unselected package r-cran-rappdirs. 128s Preparing to unpack .../205-r-cran-rappdirs_0.3.3-1_amd64.deb ... 128s Unpacking r-cran-rappdirs (0.3.3-1) ... 128s Selecting previously unselected package r-cran-httr2. 128s Preparing to unpack .../206-r-cran-httr2_1.1.1-1_all.deb ... 128s Unpacking r-cran-httr2 (1.1.1-1) ... 128s Selecting previously unselected package r-cran-evaluate. 128s Preparing to unpack .../207-r-cran-evaluate_1.0.3-1_all.deb ... 128s Unpacking r-cran-evaluate (1.0.3-1) ... 128s Selecting previously unselected package r-cran-xfun. 128s Preparing to unpack .../208-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 128s Unpacking r-cran-xfun (0.51+dfsg-1) ... 128s Selecting previously unselected package r-cran-highr. 128s Preparing to unpack .../209-r-cran-highr_0.11+dfsg-1_all.deb ... 128s Unpacking r-cran-highr (0.11+dfsg-1) ... 128s Selecting previously unselected package r-cran-yaml. 128s Preparing to unpack .../210-r-cran-yaml_2.3.10-1_amd64.deb ... 128s Unpacking r-cran-yaml (2.3.10-1) ... 128s Selecting previously unselected package libjs-mathjax. 128s Preparing to unpack .../211-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 128s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 128s Selecting previously unselected package r-cran-knitr. 128s Preparing to unpack .../212-r-cran-knitr_1.50+dfsg-1_all.deb ... 128s Unpacking r-cran-knitr (1.50+dfsg-1) ... 128s Selecting previously unselected package r-cran-selectr. 128s Preparing to unpack .../213-r-cran-selectr_0.4-2-2build1_all.deb ... 128s Unpacking r-cran-selectr (0.4-2-2build1) ... 128s Selecting previously unselected package r-cran-xml2. 128s Preparing to unpack .../214-r-cran-xml2_1.3.8-1_amd64.deb ... 128s Unpacking r-cran-xml2 (1.3.8-1) ... 128s Selecting previously unselected package r-cran-rvest. 128s Preparing to unpack .../215-r-cran-rvest_1.0.4-1_all.deb ... 128s Unpacking r-cran-rvest (1.0.4-1) ... 129s Selecting previously unselected package r-cran-stringdist. 129s Preparing to unpack .../216-r-cran-stringdist_0.9.15-1_amd64.deb ... 129s Unpacking r-cran-stringdist (0.9.15-1) ... 129s Selecting previously unselected package r-bioc-bioccheck. 129s Preparing to unpack .../217-r-bioc-bioccheck_1.42.1+dfsg-2_all.deb ... 129s Unpacking r-bioc-bioccheck (1.42.1+dfsg-2) ... 129s Selecting previously unselected package r-cran-base64enc. 129s Preparing to unpack .../218-r-cran-base64enc_0.1-3-3_amd64.deb ... 129s Unpacking r-cran-base64enc (0.1-3-3) ... 129s Selecting previously unselected package r-cran-digest. 129s Preparing to unpack .../219-r-cran-digest_0.6.37-1_amd64.deb ... 129s Unpacking r-cran-digest (0.6.37-1) ... 129s Selecting previously unselected package r-cran-htmltools. 129s Preparing to unpack .../220-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 129s Unpacking r-cran-htmltools (0.5.8.1-1) ... 129s Selecting previously unselected package r-cran-jquerylib. 129s Preparing to unpack .../221-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 129s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 129s Selecting previously unselected package r-cran-fs. 129s Preparing to unpack .../222-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 129s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 129s Selecting previously unselected package r-cran-sass. 129s Preparing to unpack .../223-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 129s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 129s Selecting previously unselected package r-cran-bslib. 129s Preparing to unpack .../224-r-cran-bslib_0.9.0+dfsg-3_all.deb ... 129s Unpacking r-cran-bslib (0.9.0+dfsg-3) ... 129s Selecting previously unselected package r-cran-fontawesome. 129s Preparing to unpack .../225-r-cran-fontawesome_0.5.3-1_all.deb ... 129s Unpacking r-cran-fontawesome (0.5.3-1) ... 129s Selecting previously unselected package r-cran-tinytex. 129s Preparing to unpack .../226-r-cran-tinytex_0.56-1_all.deb ... 129s Unpacking r-cran-tinytex (0.56-1) ... 129s Selecting previously unselected package libjs-modernizr. 129s Preparing to unpack .../227-libjs-modernizr_3.13.0-0.1_all.deb ... 129s Unpacking libjs-modernizr (3.13.0-0.1) ... 129s Selecting previously unselected package r-cran-pkgkitten. 129s Preparing to unpack .../228-r-cran-pkgkitten_0.2.4-1_all.deb ... 129s Unpacking r-cran-pkgkitten (0.2.4-1) ... 129s Selecting previously unselected package r-cran-rcpp. 129s Preparing to unpack .../229-r-cran-rcpp_1.0.14-1_amd64.deb ... 129s Unpacking r-cran-rcpp (1.0.14-1) ... 129s Selecting previously unselected package r-cran-later. 129s Preparing to unpack .../230-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 129s Unpacking r-cran-later (1.4.1+dfsg-1) ... 129s Selecting previously unselected package r-cran-promises. 129s Preparing to unpack .../231-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 129s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 129s Selecting previously unselected package r-cran-httpuv. 129s Preparing to unpack .../232-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 129s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 129s Selecting previously unselected package r-cran-xtable. 129s Preparing to unpack .../233-r-cran-xtable_1%3a1.8-4-2_all.deb ... 129s Unpacking r-cran-xtable (1:1.8-4-2) ... 129s Selecting previously unselected package r-cran-sourcetools. 129s Preparing to unpack .../234-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 129s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 129s Selecting previously unselected package r-cran-crayon. 129s Preparing to unpack .../235-r-cran-crayon_1.5.3-1_all.deb ... 129s Unpacking r-cran-crayon (1.5.3-1) ... 129s Selecting previously unselected package r-cran-commonmark. 129s Preparing to unpack .../236-r-cran-commonmark_1.9.5-1_amd64.deb ... 129s Unpacking r-cran-commonmark (1.9.5-1) ... 129s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 129s Preparing to unpack .../237-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 129s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 130s Selecting previously unselected package r-cran-shiny. 130s Preparing to unpack .../238-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 130s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 130s Selecting previously unselected package r-cran-rmarkdown. 130s Preparing to unpack .../239-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 130s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 130s Selecting previously unselected package r-cran-bookdown. 130s Preparing to unpack .../240-r-cran-bookdown_0.42+dfsg-1_all.deb ... 130s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 130s Selecting previously unselected package tex-common. 130s Preparing to unpack .../241-tex-common_6.19_all.deb ... 130s Unpacking tex-common (6.19) ... 130s Selecting previously unselected package t1utils. 130s Preparing to unpack .../242-t1utils_1.41-4build3_amd64.deb ... 130s Unpacking t1utils (1.41-4build3) ... 130s Selecting previously unselected package texlive-binaries. 130s Preparing to unpack .../243-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 130s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 130s Selecting previously unselected package texlive-base. 130s Preparing to unpack .../244-texlive-base_2024.20250309-1_all.deb ... 130s Unpacking texlive-base (2024.20250309-1) ... 131s Selecting previously unselected package texlive-latex-base. 131s Preparing to unpack .../245-texlive-latex-base_2024.20250309-1_all.deb ... 131s Unpacking texlive-latex-base (2024.20250309-1) ... 131s Selecting previously unselected package texlive-bibtex-extra. 131s Preparing to unpack .../246-texlive-bibtex-extra_2024.20250309-2_all.deb ... 131s Unpacking texlive-bibtex-extra (2024.20250309-2) ... 133s Selecting previously unselected package r-bioc-biocversion. 133s Preparing to unpack .../247-r-bioc-biocversion_3.20.0-2_all.deb ... 133s Unpacking r-bioc-biocversion (3.20.0-2) ... 133s Selecting previously unselected package r-bioc-biocstyle. 133s Preparing to unpack .../248-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 133s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 133s Selecting previously unselected package r-cran-brew. 133s Preparing to unpack .../249-r-cran-brew_1.0-10-1_all.deb ... 133s Unpacking r-cran-brew (1.0-10-1) ... 133s Selecting previously unselected package r-cran-brio. 133s Preparing to unpack .../250-r-cran-brio_1.1.5-1_amd64.deb ... 133s Unpacking r-cran-brio (1.1.5-1) ... 133s Selecting previously unselected package r-cran-clipr. 133s Preparing to unpack .../251-r-cran-clipr_0.8.0-1_all.deb ... 133s Unpacking r-cran-clipr (0.8.0-1) ... 133s Selecting previously unselected package r-cran-credentials. 133s Preparing to unpack .../252-r-cran-credentials_2.0.2-1_all.deb ... 133s Unpacking r-cran-credentials (2.0.2-1) ... 133s Selecting previously unselected package r-cran-desc. 133s Preparing to unpack .../253-r-cran-desc_1.4.3-1_all.deb ... 133s Unpacking r-cran-desc (1.4.3-1) ... 133s Selecting previously unselected package r-cran-rstudioapi. 133s Preparing to unpack .../254-r-cran-rstudioapi_0.17.1-1_all.deb ... 133s Unpacking r-cran-rstudioapi (0.17.1-1) ... 133s Selecting previously unselected package r-cran-zip. 133s Preparing to unpack .../255-r-cran-zip_2.3.2-1_amd64.deb ... 133s Unpacking r-cran-zip (2.3.2-1) ... 134s Selecting previously unselected package r-cran-gert. 134s Preparing to unpack .../256-r-cran-gert_2.1.4+dfsg-1build1_amd64.deb ... 134s Unpacking r-cran-gert (2.1.4+dfsg-1build1) ... 134s Selecting previously unselected package r-cran-gitcreds. 134s Preparing to unpack .../257-r-cran-gitcreds_0.1.2-1_all.deb ... 134s Unpacking r-cran-gitcreds (0.1.2-1) ... 134s Selecting previously unselected package r-cran-ini. 134s Preparing to unpack .../258-r-cran-ini_0.3.1-2build1_all.deb ... 134s Unpacking r-cran-ini (0.3.1-2build1) ... 134s Selecting previously unselected package r-cran-gh. 134s Preparing to unpack .../259-r-cran-gh_1.4.1-1_all.deb ... 134s Unpacking r-cran-gh (1.4.1-1) ... 134s Selecting previously unselected package r-cran-rprojroot. 134s Preparing to unpack .../260-r-cran-rprojroot_2.0.4-2_all.deb ... 134s Unpacking r-cran-rprojroot (2.0.4-2) ... 134s Selecting previously unselected package r-cran-whisker. 134s Preparing to unpack .../261-r-cran-whisker_0.4.1-1_all.deb ... 134s Unpacking r-cran-whisker (0.4.1-1) ... 134s Selecting previously unselected package r-cran-usethis. 134s Preparing to unpack .../262-r-cran-usethis_3.1.0-1_all.deb ... 134s Unpacking r-cran-usethis (3.1.0-1) ... 134s Selecting previously unselected package r-cran-ellipsis. 134s Preparing to unpack .../263-r-cran-ellipsis_0.3.2-2_amd64.deb ... 134s Unpacking r-cran-ellipsis (0.3.2-2) ... 134s Selecting previously unselected package r-cran-miniui. 134s Preparing to unpack .../264-r-cran-miniui_0.1.1.1-3build1_all.deb ... 134s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 134s Selecting previously unselected package r-cran-pkgbuild. 134s Preparing to unpack .../265-r-cran-pkgbuild_1.4.6-1_all.deb ... 134s Unpacking r-cran-pkgbuild (1.4.6-1) ... 134s Selecting previously unselected package r-cran-downlit. 134s Preparing to unpack .../266-r-cran-downlit_0.4.4-1_all.deb ... 134s Unpacking r-cran-downlit (0.4.4-1) ... 134s Selecting previously unselected package r-cran-systemfonts. 134s Preparing to unpack .../267-r-cran-systemfonts_1.2.1-1_amd64.deb ... 134s Unpacking r-cran-systemfonts (1.2.1-1) ... 134s Selecting previously unselected package r-cran-textshaping. 134s Preparing to unpack .../268-r-cran-textshaping_0.3.7-2_amd64.deb ... 134s Unpacking r-cran-textshaping (0.3.7-2) ... 134s Selecting previously unselected package r-cran-ragg. 134s Preparing to unpack .../269-r-cran-ragg_1.3.3-1_amd64.deb ... 134s Unpacking r-cran-ragg (1.3.3-1) ... 134s Selecting previously unselected package libjs-bootswatch. 134s Preparing to unpack .../270-libjs-bootswatch_3.3.7+dfsg2-1.1_all.deb ... 134s Unpacking libjs-bootswatch (3.3.7+dfsg2-1.1) ... 134s Selecting previously unselected package r-cran-pkgdown. 134s Preparing to unpack .../271-r-cran-pkgdown_2.1.1-2_all.deb ... 134s Unpacking r-cran-pkgdown (2.1.1-2) ... 134s Selecting previously unselected package r-cran-pkgload. 134s Preparing to unpack .../272-r-cran-pkgload_1.4.0-1_all.deb ... 134s Unpacking r-cran-pkgload (1.4.0-1) ... 134s Selecting previously unselected package r-cran-htmlwidgets. 134s Preparing to unpack .../273-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 134s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 134s Selecting previously unselected package r-cran-profvis. 134s Preparing to unpack .../274-r-cran-profvis_0.4.0+dfsg-1_amd64.deb ... 134s Unpacking r-cran-profvis (0.4.0+dfsg-1) ... 134s Selecting previously unselected package r-cran-prettyunits. 134s Preparing to unpack .../275-r-cran-prettyunits_1.2.0-1_all.deb ... 134s Unpacking r-cran-prettyunits (1.2.0-1) ... 134s Selecting previously unselected package r-cran-sessioninfo. 134s Preparing to unpack .../276-r-cran-sessioninfo_1.2.3-1_all.deb ... 134s Unpacking r-cran-sessioninfo (1.2.3-1) ... 134s Selecting previously unselected package r-cran-xopen. 134s Preparing to unpack .../277-r-cran-xopen_1.0.1+dfsg-1_all.deb ... 134s Unpacking r-cran-xopen (1.0.1+dfsg-1) ... 135s Selecting previously unselected package r-cran-rcmdcheck. 135s Preparing to unpack .../278-r-cran-rcmdcheck_1.4.0-4_all.deb ... 135s Unpacking r-cran-rcmdcheck (1.4.0-4) ... 135s Selecting previously unselected package r-cran-remotes. 135s Preparing to unpack .../279-r-cran-remotes_2.5.0+dfsg-1_all.deb ... 135s Unpacking r-cran-remotes (2.5.0+dfsg-1) ... 135s Selecting previously unselected package r-cran-roxygen2. 135s Preparing to unpack .../280-r-cran-roxygen2_7.3.2-1_amd64.deb ... 135s Unpacking r-cran-roxygen2 (7.3.2-1) ... 135s Selecting previously unselected package r-cran-rversions. 135s Preparing to unpack .../281-r-cran-rversions_2.1.2-1_all.deb ... 135s Unpacking r-cran-rversions (2.1.2-1) ... 135s Selecting previously unselected package r-cran-praise. 135s Preparing to unpack .../282-r-cran-praise_1.0.0-4build1_all.deb ... 135s Unpacking r-cran-praise (1.0.0-4build1) ... 135s Selecting previously unselected package r-cran-diffobj. 135s Preparing to unpack .../283-r-cran-diffobj_0.3.5-1_amd64.deb ... 135s Unpacking r-cran-diffobj (0.3.5-1) ... 135s 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136s Setting up libblas3:amd64 (3.12.1-2) ... 136s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 136s Setting up libpkgconf3:amd64 (1.8.1-4) ... 136s Setting up libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 136s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 136s Setting up libjs-bootswatch (3.3.7+dfsg2-1.1) ... 136s Setting up t1utils (1.41-4build3) ... 136s Setting up libquadmath0:amd64 (15.1.0-1ubuntu1) ... 136s Setting up libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 136s Setting up libjs-d3 (3.5.17-4) ... 136s Setting up fonts-dejavu-mono (2.37-8) ... 136s Setting up libmpc3:amd64 (1.3.1-1build2) ... 136s Setting up libatomic1:amd64 (15.1.0-1ubuntu1) ... 136s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 136s Setting up libmpfi0:amd64 (1.5.4+ds-4) ... 136s Setting up icu-devtools (76.1-1ubuntu2) ... 136s Setting up fonts-dejavu-core (2.37-8) ... 136s 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(1.3.8-1) ... 140s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 140s Setting up r-cran-fontawesome (0.5.3-1) ... 140s Setting up gfortran (4:14.2.0-1ubuntu1) ... 140s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 140s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 140s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 140s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 140s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 140s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 140s Setting up texlive-bibtex-extra (2024.20250309-2) ... 140s Setting up r-cran-httr2 (1.1.1-1) ... 140s Setting up r-cran-systemfonts (1.2.1-1) ... 141s Setting up r-cran-httr (1.4.7+dfsg-1) ... 141s 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141s Setting up r-cran-rcmdcheck (1.4.0-4) ... 141s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 141s Setting up r-cran-roxygen2 (7.3.2-1) ... 141s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... 141s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 141s Setting up r-cran-usethis (3.1.0-1) ... 141s Setting up r-bioc-bioccheck (1.42.1+dfsg-2) ... 141s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 141s Setting up r-cran-miniui (0.1.1.1-3build1) ... 141s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 141s Setting up r-cran-pkgdown (2.1.1-2) ... 141s Setting up r-cran-bookdown (0.42+dfsg-1) ... 141s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 141s Setting up r-cran-profvis (0.4.0+dfsg-1) ... 141s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 141s Setting up r-cran-devtools (2.4.5-1) ... 141s Processing triggers for man-db (2.13.0-1) ... 142s Processing triggers for install-info (7.1.1-1) ... 142s Processing triggers for libc-bin (2.41-6ubuntu1) ... 142s Processing triggers for tex-common (6.19) ... 143s Running updmap-sys. This may take some time... done. 143s Running mktexlsr /var/lib/texmf ... done. 143s Building format(s) --all. 172s This may take some time... done. 173s autopkgtest [23:22:52]: testbed environment configured for cross-architecture building 173s autopkgtest [23:22:52]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 173s autopkgtest [23:22:52]: test pkg-r-autopkgtest: [----------------------- 173s Test: Try to load the R library BiocCheck 173s 173s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" 173s Copyright (C) 2025 The R Foundation for Statistical Computing 173s Platform: x86_64-pc-linux-gnu 173s 173s R is free software and comes with ABSOLUTELY NO WARRANTY. 173s You are welcome to redistribute it under certain conditions. 173s Type 'license()' or 'licence()' for distribution details. 173s 173s R is a collaborative project with many contributors. 173s Type 'contributors()' for more information and 173s 'citation()' on how to cite R or R packages in publications. 173s 173s Type 'demo()' for some demos, 'help()' for on-line help, or 173s 'help.start()' for an HTML browser interface to help. 173s Type 'q()' to quit R. 173s 173s > library('BiocCheck') 175s > 175s Other tests are currently unsupported! 175s They will be progressively added. 175s autopkgtest [23:22:54]: test pkg-r-autopkgtest: -----------------------] 176s autopkgtest [23:22:55]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 176s pkg-r-autopkgtest PASS 176s autopkgtest [23:22:55]: @@@@@@@@@@@@@@@@@@@@ summary 176s pkg-r-autopkgtest PASS 193s nova [W] Skipping flock for amd64 193s Creating nova instance adt-questing-i386-r-bioc-bioccheck-20250502-231958-juju-7f2275-prod-proposed-migration-environment-23-490abdb8-27c8-450f-b972-ac6fd99a0e22 from image adt/ubuntu-questing-amd64-server-20250502.img (UUID 9956ea44-e870-4bd8-8ad1-dc5f8a09f1f9)... 193s nova [W] Timed out waiting for 28f743ba-5bfe-47a7-a17f-cc034d05997e to get deleted.