0s autopkgtest [23:10:34]: starting date and time: 2025-05-02 23:10:34+0000
  0s autopkgtest [23:10:34]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [23:10:34]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.by9lc3_a/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base --apt-upgrade pique --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-13.secgroup --name adt-questing-i386-pique-20250502-231034-juju-7f2275-prod-proposed-migration-environment-2-9c183f26-8da9-4211-974c-4d3118325d25 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
 57s autopkgtest [23:11:31]: testbed dpkg architecture: amd64
 57s autopkgtest [23:11:31]: testbed apt version: 3.0.0
 57s autopkgtest [23:11:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 58s autopkgtest [23:11:32]: testbed release detected to be: None
 58s autopkgtest [23:11:32]: updating testbed package index (apt update)
 59s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
 59s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
 59s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
 59s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
 59s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1947 kB]
 60s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.1 kB]
 60s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB]
 60s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [233 kB]
 60s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [178 kB]
 60s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1515 kB]
 60s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [671 kB]
 60s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [15.1 kB]
 60s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [13.9 kB]
 60s Fetched 4894 kB in 1s (3548 kB/s)
 61s Reading package lists...
 62s autopkgtest [23:11:36]: upgrading testbed (apt dist-upgrade and autopurge)
 62s Reading package lists...
 63s Building dependency tree...
 63s Reading state information...
 64s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 64s Starting 2 pkgProblemResolver with broken count: 0
 64s Done
 65s Entering ResolveByKeep
 65s 
 66s Calculating upgrade...
 66s The following packages will be upgraded:
 66s   ed fwupd htop libftdi1-2 libfwupd3 libnpth0t64 libsensors-config libsensors5
 66s   liburcu8t64 mokutil nano usb.ids
 66s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 66s Need to get 6445 kB of archives.
 66s After this operation, 193 kB disk space will be freed.
 66s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libnpth0t64 amd64 1.8-3 [9294 B]
 66s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 ed amd64 1.21.1-1 [57.2 kB]
 67s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libsensors-config all 1:3.6.2-2 [6756 B]
 67s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libsensors5 amd64 1:3.6.2-2 [28.7 kB]
 67s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 liburcu8t64 amd64 0.15.2-2 [63.9 kB]
 67s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 nano amd64 8.4-1 [290 kB]
 67s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 usb.ids all 2025.04.01-1 [223 kB]
 67s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 fwupd amd64 2.0.8-3 [5396 kB]
 67s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libfwupd3 amd64 2.0.8-3 [136 kB]
 67s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 htop amd64 3.4.1-4 [175 kB]
 67s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 libftdi1-2 amd64 1.5-10 [30.7 kB]
 67s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 mokutil amd64 0.7.2-1 [27.9 kB]
 68s Fetched 6445 kB in 1s (6676 kB/s)
 68s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
 68s Preparing to unpack .../libnpth0t64_1.8-3_amd64.deb ...
 68s Unpacking libnpth0t64:amd64 (1.8-3) over (1.8-2) ...
 68s Setting up libnpth0t64:amd64 (1.8-3) ...
 68s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
 68s Preparing to unpack .../00-ed_1.21.1-1_amd64.deb ...
 68s Unpacking ed (1.21.1-1) over (1.21-1) ...
 68s Preparing to unpack .../01-libsensors-config_1%3a3.6.2-2_all.deb ...
 68s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ...
 68s Preparing to unpack .../02-libsensors5_1%3a3.6.2-2_amd64.deb ...
 68s Unpacking libsensors5:amd64 (1:3.6.2-2) over (1:3.6.0-10) ...
 68s Preparing to unpack .../03-liburcu8t64_0.15.2-2_amd64.deb ...
 68s Unpacking liburcu8t64:amd64 (0.15.2-2) over (0.15.1-1) ...
 68s Preparing to unpack .../04-nano_8.4-1_amd64.deb ...
 68s Unpacking nano (8.4-1) over (8.3-1) ...
 69s Preparing to unpack .../05-usb.ids_2025.04.01-1_all.deb ...
 69s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ...
 69s Preparing to unpack .../06-fwupd_2.0.8-3_amd64.deb ...
 69s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ...
 69s Preparing to unpack .../07-libfwupd3_2.0.8-3_amd64.deb ...
 69s Unpacking libfwupd3:amd64 (2.0.8-3) over (2.0.7-1) ...
 69s Preparing to unpack .../08-htop_3.4.1-4_amd64.deb ...
 69s Unpacking htop (3.4.1-4) over (3.4.0-2) ...
 69s Preparing to unpack .../09-libftdi1-2_1.5-10_amd64.deb ...
 69s Unpacking libftdi1-2:amd64 (1.5-10) over (1.5-8build1) ...
 69s Preparing to unpack .../10-mokutil_0.7.2-1_amd64.deb ...
 69s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ...
 69s Setting up liburcu8t64:amd64 (0.15.2-2) ...
 69s Setting up mokutil (0.7.2-1) ...
 69s Setting up htop (3.4.1-4) ...
 69s Setting up libsensors-config (1:3.6.2-2) ...
 69s Installing new version of config file /etc/sensors3.conf ...
 69s Setting up libfwupd3:amd64 (2.0.8-3) ...
 69s Setting up libftdi1-2:amd64 (1.5-10) ...
 69s Setting up ed (1.21.1-1) ...
 69s Setting up usb.ids (2025.04.01-1) ...
 69s Setting up libsensors5:amd64 (1:3.6.2-2) ...
 69s Setting up nano (8.4-1) ...
 69s Installing new version of config file /etc/nanorc ...
 69s Setting up fwupd (2.0.8-3) ...
 70s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
 70s fwupd.service is a disabled or a static unit not running, not starting it.
 70s Processing triggers for man-db (2.13.0-1) ...
 72s Processing triggers for dbus (1.16.2-2ubuntu1) ...
 72s Processing triggers for install-info (7.1.1-1) ...
 72s Processing triggers for libc-bin (2.41-6ubuntu1) ...
 73s Reading package lists...
 73s Building dependency tree...
 73s Reading state information...
 73s Starting pkgProblemResolver with broken count: 0
 73s Starting 2 pkgProblemResolver with broken count: 0
 73s Done
 74s Solving dependencies...
 74s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 74s autopkgtest [23:11:48]: rebooting testbed after setup commands that affected boot
 98s autopkgtest [23:12:12]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr  6 15:05:05 UTC 2025
101s autopkgtest [23:12:15]: @@@@@@@@@@@@@@@@@@@@ apt-source pique
103s Get:1 http://ftpmaster.internal/ubuntu questing/universe pique 1.0-7 (dsc) [2005 B]
103s Get:2 http://ftpmaster.internal/ubuntu questing/universe pique 1.0-7 (tar) [2017 kB]
103s Get:3 http://ftpmaster.internal/ubuntu questing/universe pique 1.0-7 (diff) [5236 B]
104s gpgv: Signature made Tue Dec 12 20:17:37 2023 UTC
104s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
104s gpgv:                issuer "tille@debian.org"
104s gpgv: Can't check signature: No public key
104s dpkg-source: warning: cannot verify inline signature for ./pique_1.0-7.dsc: no acceptable signature found
104s autopkgtest [23:12:18]: testing package pique version 1.0-7
104s autopkgtest [23:12:18]: build not needed
105s autopkgtest [23:12:19]: test run-unit-test: preparing testbed
105s Reading package lists...
105s Building dependency tree...
105s Reading state information...
106s Starting pkgProblemResolver with broken count: 21
106s Starting 2 pkgProblemResolver with broken count: 21
106s Investigating (0) r-cran-tibble:amd64 < none -> 3.2.1+dfsg-3 @un puN Ib >
106s Broken r-cran-tibble:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.2)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-tibble:amd64 159
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-tibble:amd64 159
106s Investigating (0) r-cran-vctrs:amd64 < none -> 0.6.5-1 @un puN Ib >
106s Broken r-cran-vctrs:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-vctrs:amd64 127
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-vctrs:amd64 127
106s Investigating (0) r-cran-lifecycle:amd64 < none -> 1.0.4+dfsg-1 @un puN Ib >
106s Broken r-cran-lifecycle:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-lifecycle:amd64 90
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-lifecycle:amd64 90
106s Investigating (0) r-cran-htmltools:amd64 < none -> 0.5.8.1-1 @un puN Ib >
106s Broken r-cran-htmltools:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.0)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-htmltools:amd64 89
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-htmltools:amd64 89
106s Investigating (0) r-cran-shiny:amd64 < none -> 1.10.0+dfsg-2 @un puN Ib >
106s Broken r-cran-shiny:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-shiny:amd64 85
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-shiny:amd64 85
106s Investigating (0) r-cran-dplyr:amd64 < none -> 1.1.4-4 @un puN Ib >
106s Broken r-cran-dplyr:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-dplyr:amd64 81
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-dplyr:amd64 81
106s Investigating (0) r-cran-sass:amd64 < none -> 0.4.9+dfsg-1 @un puN Ib >
106s Broken r-cran-sass:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-sass:amd64 78
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-sass:amd64 78
106s Investigating (0) r-cran-bslib:amd64 < none -> 0.9.0+dfsg-1syncable1 @un puN Ib >
106s Broken r-cran-bslib:amd64 Depends on r-cran-rlang:amd64 < none @un pH >
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-bslib:amd64 75
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-bslib:amd64 75
106s Investigating (0) r-cran-ggplot2:amd64 < none -> 3.5.1+dfsg-1 @un puN Ib >
106s Broken r-cran-ggplot2:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-ggplot2:amd64 63
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-ggplot2:amd64 63
106s Investigating (0) r-cran-pillar:amd64 < none -> 1.10.1+dfsg-1 @un puN Ib >
106s Broken r-cran-pillar:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.2)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-pillar:amd64 42
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-pillar:amd64 42
106s Investigating (0) r-cran-fontawesome:amd64 < none -> 0.5.3-1 @un puN Ib >
106s Broken r-cran-fontawesome:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.6)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-fontawesome:amd64 40
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-fontawesome:amd64 40
106s Investigating (0) r-cran-purrr:amd64 < none -> 1.0.4-1 @un puN Ib >
106s Broken r-cran-purrr:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.1)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-purrr:amd64 31
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-purrr:amd64 31
106s Investigating (0) r-cran-tidyr:amd64 < none -> 1.3.1-1 @un puN Ib >
106s Broken r-cran-tidyr:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.1)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-tidyr:amd64 27
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-tidyr:amd64 27
106s Investigating (0) r-cran-scales:amd64 < none -> 1.3.0-1 @un puN Ib >
106s Broken r-cran-scales:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.0)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-scales:amd64 24
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-scales:amd64 24
106s Investigating (0) r-cran-gtable:amd64 < none -> 0.3.6+dfsg-1 @un puN Ib >
106s Broken r-cran-gtable:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-gtable:amd64 18
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-gtable:amd64 18
106s Investigating (0) r-cran-tidyselect:amd64 < none -> 1.2.1+dfsg-1 @un puN Ib >
106s Broken r-cran-tidyselect:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.4)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-tidyselect:amd64 18
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-tidyselect:amd64 18
106s Investigating (0) r-cran-later:amd64 < none -> 1.4.1+dfsg-1 @un puN Ib >
106s Broken r-cran-later:amd64 Depends on r-cran-rlang:amd64 < none @un pH >
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-later:amd64 16
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-later:amd64 16
106s Investigating (0) r-cran-cachem:amd64 < none -> 1.1.0-1 @un puN Ib >
106s Broken r-cran-cachem:amd64 Depends on r-cran-rlang:amd64 < none @un pH >
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-cachem:amd64 9
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-cachem:amd64 9
106s Investigating (0) r-cran-promises:amd64 < none -> 1.3.2+dfsg-1 @un puN Ib >
106s Broken r-cran-promises:amd64 Depends on r-cran-rlang:amd64 < none @un pH >
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-promises:amd64 7
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-promises:amd64 7
106s Investigating (0) r-cran-stringr:amd64 < none -> 1.5.1-1 @un puN Ib >
106s Broken r-cran-stringr:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.0)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-stringr:amd64 7
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-stringr:amd64 7
106s Investigating (0) r-cran-memoise:amd64 < none -> 2.0.1-1 @un puN Ib >
106s Broken r-cran-memoise:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10)
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-memoise:amd64 2
106s   Considering r-cran-rlang:amd64 9 as a solution to r-cran-memoise:amd64 2
106s Done
106s Some packages could not be installed. This may mean that you have
106s requested an impossible situation or if you are using the unstable
106s distribution that some required packages have not yet been created
106s or been moved out of Incoming.
106s The following information may help to resolve the situation:
106s 
106s The following packages have unmet dependencies:
106s  r-cran-bslib : Depends: r-cran-rlang but it is not installable
106s  r-cran-cachem : Depends: r-cran-rlang but it is not installable
106s  r-cran-dplyr : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
106s  r-cran-fontawesome : Depends: r-cran-rlang (>= 1.0.6) but it is not installable
106s  r-cran-ggplot2 : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
106s  r-cran-gtable : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
106s  r-cran-htmltools : Depends: r-cran-rlang (>= 1.0.0) but it is not installable
106s  r-cran-later : Depends: r-cran-rlang but it is not installable
106s  r-cran-lifecycle : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
106s  r-cran-memoise : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
106s  r-cran-pillar : Depends: r-cran-rlang (>= 1.0.2) but it is not installable
106s  r-cran-promises : Depends: r-cran-rlang but it is not installable
106s  r-cran-purrr : Depends: r-cran-rlang (>= 1.1.1) but it is not installable
106s  r-cran-sass : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
106s  r-cran-scales : Depends: r-cran-rlang (>= 1.0.0) but it is not installable
106s  r-cran-shiny : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
106s  r-cran-stringr : Depends: r-cran-rlang (>= 1.0.0) but it is not installable
106s  r-cran-tibble : Depends: r-cran-rlang (>= 1.0.2) but it is not installable
106s  r-cran-tidyr : Depends: r-cran-rlang (>= 1.1.1) but it is not installable
106s  r-cran-tidyselect : Depends: r-cran-rlang (>= 1.0.4) but it is not installable
106s  r-cran-vctrs : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
106s E: Unable to correct problems, you have held broken packages.
106s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed
107s Reading package lists...
107s Building dependency tree...
107s Reading state information...
108s Starting pkgProblemResolver with broken count: 0
108s Starting 2 pkgProblemResolver with broken count: 0
108s Done
109s The following NEW packages will be installed:
109s   eigensoft emmax fontconfig fontconfig-config fonts-dejavu-core
109s   fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings
109s   fonts-mathjax javascript-common libb-hooks-op-check-perl libblas3 libcairo2
109s   libclass-method-modifiers-perl libclass-xsaccessor-perl libdatrie1
109s   libdeflate0 libdevel-callchecker-perl libdynaloader-functions-perl
109s   libfile-slurp-perl libfontconfig1 libgfortran5 libgomp1 libgraphite2-3
109s   libgsl28 libgslcblas0 libharfbuzz0b libice6 libimport-into-perl libjbig0
109s   libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3
109s   libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
109s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
109s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
109s   libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 liblapacke
109s   liblerc4 liblua5.4-0 libmodule-runtime-perl libmoo-perl libpango-1.0-0
109s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2
109s   libparallel-forkmanager-perl libparams-classify-perl libpixman-1-0
109s   libreadonly-perl librole-tiny-perl libsharpyuv0 libsm6 libsub-quote-perl
109s   libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libtmglib3 libwebp7
109s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler
109s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
109s   pique pique-doc plink1.9 r-base-core r-bioc-biobase r-bioc-biocgenerics
109s   r-bioc-multtest r-cran-acepack r-cran-backports r-cran-base64enc
109s   r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli
109s   r-cran-cluster r-cran-colorspace r-cran-commonmark r-cran-cpp11
109s   r-cran-crayon r-cran-curl r-cran-data.table r-cran-deldir r-cran-digest
109s   r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap
109s   r-cran-fontawesome r-cran-forecast r-cran-foreign r-cran-formula
109s   r-cran-fracdiff r-cran-fs r-cran-generics r-cran-getopt r-cran-ggplot2
109s   r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc
109s   r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv
109s   r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite
109s   r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-latticeextra
109s   r-cran-lifecycle r-cran-littler r-cran-lmtest r-cran-magrittr r-cran-mass
109s   r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
109s   r-cran-nlme r-cran-nnet r-cran-optparse r-cran-pillar r-cran-pkgconfig
109s   r-cran-pkgkitten r-cran-png r-cran-promises r-cran-purrr r-cran-quadprog
109s   r-cran-quantmod r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp
109s   r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rlang r-cran-rmarkdown
109s   r-cran-rpart r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny
109s   r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival
109s   r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-timedate r-cran-tinytex
109s   r-cran-tseries r-cran-ttr r-cran-urca r-cran-uroot r-cran-utf8 r-cran-vctrs
109s   r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable
109s   r-cran-xts r-cran-yaml r-cran-zoo unzip x11-common xdg-utils zip
109s The following packages will be upgraded:
109s   gcc-15-base libatomic1 libgcc-s1 libperl5.40 libstdc++6 perl perl-base
109s   perl-modules-5.40
109s 8 upgraded, 205 newly installed, 0 to remove and 109 not upgraded.
109s Need to get 194 MB of archives.
109s After this operation, 542 MB of additional disk space will be used.
109s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libperl5.40 amd64 5.40.1-3 [4877 kB]
110s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl amd64 5.40.1-3 [262 kB]
110s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl-base amd64 5.40.1-3 [1840 kB]
110s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl-modules-5.40 all 5.40.1-3 [3217 kB]
110s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 gcc-15-base amd64 15.1.0-1ubuntu1 [54.5 kB]
110s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgcc-s1 amd64 15.1.0-1ubuntu1 [78.1 kB]
110s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libatomic1 amd64 15.1.0-1ubuntu1 [10.5 kB]
110s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libstdc++6 amd64 15.1.0-1ubuntu1 [814 kB]
110s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
110s Get:10 http://ftpmaster.internal/ubuntu questing/universe amd64 libgslcblas0 amd64 2.8+dfsg-5ubuntu1 [113 kB]
110s Get:11 http://ftpmaster.internal/ubuntu questing/universe amd64 libgsl28 amd64 2.8+dfsg-5ubuntu1 [1043 kB]
110s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgfortran5 amd64 15.1.0-1ubuntu1 [924 kB]
110s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
111s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libtmglib3 amd64 3.12.1-2 [164 kB]
111s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 liblapacke amd64 3.12.1-2 [410 kB]
111s Get:16 http://ftpmaster.internal/ubuntu questing/universe amd64 eigensoft amd64 8.0.0+dfsg-2build1 [327 kB]
111s Get:17 http://ftpmaster.internal/ubuntu questing/universe amd64 emmax amd64 0~beta.20100307-5 [30.8 kB]
111s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
111s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
111s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB]
111s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB]
111s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB]
111s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
111s Get:24 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-4 [119 kB]
111s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
111s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 javascript-common all 12 [5216 B]
111s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 libb-hooks-op-check-perl amd64 0.22-3build2 [9624 B]
111s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
111s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
111s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
111s Get:31 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
111s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB]
111s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libclass-method-modifiers-perl all 2.15-1 [16.1 kB]
111s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libclass-xsaccessor-perl amd64 1.19-4build6 [33.8 kB]
111s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
111s Get:36 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB]
111s Get:37 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libdynaloader-functions-perl all 0.004-2 [11.5 kB]
111s Get:38 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libdevel-callchecker-perl amd64 0.009-2 [14.2 kB]
111s Get:39 http://ftpmaster.internal/ubuntu questing/universe amd64 libfile-slurp-perl all 9999.32-2 [21.7 kB]
111s Get:40 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libgomp1 amd64 15.1.0-1ubuntu1 [151 kB]
111s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
111s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
111s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB]
111s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
111s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libparams-classify-perl amd64 0.015-2build6 [20.1 kB]
111s Get:46 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libmodule-runtime-perl all 0.018-1 [15.2 kB]
111s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 libimport-into-perl all 1.002005-2 [10.7 kB]
111s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
111s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
111s Get:50 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 libjs-bootstrap all 3.4.1+dfsg-4 [129 kB]
111s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
111s Get:52 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
111s Get:53 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-d3 all 3.5.17-4 [132 kB]
111s Get:54 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
111s Get:55 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
111s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
111s Get:57 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
111s Get:58 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
111s Get:59 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
111s Get:60 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
111s Get:61 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
111s Get:62 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
111s Get:63 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
111s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
111s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB]
111s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 librole-tiny-perl all 2.002004-1 [16.3 kB]
111s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libsub-quote-perl all 2.006008-1ubuntu1 [20.7 kB]
111s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libmoo-perl all 2.005005-1 [47.4 kB]
111s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
111s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
111s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB]
111s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB]
111s Get:73 http://ftpmaster.internal/ubuntu questing/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB]
111s Get:74 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
111s Get:75 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
111s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libparallel-forkmanager-perl all 2.03-1 [27.6 kB]
111s Get:77 http://ftpmaster.internal/ubuntu questing/universe amd64 libreadonly-perl all 2.050-3 [19.9 kB]
111s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
111s Get:79 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB]
111s Get:80 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
111s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
112s Get:82 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
112s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB]
112s Get:84 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
112s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
112s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
112s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
112s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
112s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
112s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
112s Get:91 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-core amd64 4.5.0-3 [28.9 MB]
112s Get:92 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-littler amd64 0.3.21-1 [99.3 kB]
112s Get:93 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 littler all 0.3.21-1 [2584 B]
112s Get:94 http://ftpmaster.internal/ubuntu questing/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
112s Get:95 http://ftpmaster.internal/ubuntu questing/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
112s Get:96 http://ftpmaster.internal/ubuntu questing/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
112s Get:97 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
112s Get:98 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB]
113s Get:99 http://ftpmaster.internal/ubuntu questing/universe amd64 plink1.9 amd64 1.90~b7.7-241022-1 [1022 kB]
113s Get:100 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-getopt all 1.20.4-1 [38.4 kB]
113s Get:101 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB]
113s Get:102 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fracdiff amd64 1.5-3-1 [108 kB]
113s Get:103 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB]
113s Get:104 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
114s Get:105 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
114s Get:106 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
114s Get:107 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
114s Get:108 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
114s Get:109 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
114s Get:110 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB]
114s Get:111 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB]
114s Get:112 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB]
114s Get:113 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB]
114s Get:114 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-mgcv amd64 1.9-3-1 [3414 kB]
114s Get:115 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
114s Get:116 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
114s Get:117 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB]
114s Get:118 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
114s Get:119 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
114s Get:120 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
114s Get:121 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
114s Get:122 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fansi amd64 1.0.6-1ubuntu1 [632 kB]
114s Get:123 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
114s Get:124 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
114s Get:125 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
114s Get:126 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
114s Get:127 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
114s Get:128 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
114s Get:129 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
114s Get:130 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
114s Get:131 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-zoo amd64 1.8-14-1 [1000 kB]
114s Get:132 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB]
114s Get:133 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB]
114s Get:134 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
114s Get:135 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB]
115s Get:136 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-timedate amd64 4041.110-1 [1208 kB]
115s Get:137 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-quadprog amd64 1.5-8-1build1 [30.9 kB]
115s Get:138 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB]
115s Get:139 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB]
115s Get:140 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-ttr amd64 0.24.4-1 [511 kB]
115s Get:141 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
115s Get:142 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-quantmod all 0.4.27-1 [1034 kB]
115s Get:143 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tseries amd64 0.10-58-1 [377 kB]
115s Get:144 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-urca amd64 1.3-4-1 [1049 kB]
115s Get:145 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-rcpparmadillo amd64 14.4.2-1-1 [851 kB]
115s Get:146 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-forecast amd64 8.23.0-1 [1569 kB]
115s Get:147 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
115s Get:148 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB]
115s Get:149 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB]
115s Get:150 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-multtest amd64 2.62.0-2 [844 kB]
115s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-optparse all 1.7.5-1 [83.6 kB]
115s Get:152 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-uroot all 2.1-3-1 [1927 kB]
115s Get:153 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 pique all 1.1-1 [21.7 kB]
115s Get:154 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 pique-doc all 1.1-1 [3526 kB]
115s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-acepack amd64 1.6.1-1 [91.2 kB]
115s Get:156 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB]
115s Get:157 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB]
115s Get:158 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
115s Get:159 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
115s Get:160 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB]
115s Get:161 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
115s Get:162 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
115s Get:163 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
115s Get:164 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
115s Get:165 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
115s Get:166 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB]
115s Get:167 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
115s Get:168 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-bslib all 0.9.0+dfsg-3 [4562 kB]
115s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-checkmate amd64 2.3.2-1 [706 kB]
115s Get:170 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-chron amd64 2.3-62-1 [189 kB]
115s Get:171 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB]
115s Get:172 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
115s Get:173 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB]
115s Get:174 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
115s Get:175 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB]
115s Get:176 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB]
115s Get:177 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB]
115s Get:178 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB]
115s Get:179 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB]
115s Get:180 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
116s Get:181 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-foreign amd64 0.8.90-1 [250 kB]
116s Get:182 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-formula all 1.2-5-1 [158 kB]
116s Get:183 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB]
116s Get:184 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB]
116s Get:185 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
116s Get:186 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB]
116s Get:187 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB]
116s Get:188 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
116s Get:189 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
116s Get:190 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
116s Get:191 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-knitr all 1.50+dfsg-1 [840 kB]
116s Get:192 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tinytex all 0.56-1 [148 kB]
116s Get:193 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB]
116s Get:194 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
116s Get:195 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
116s Get:196 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
116s Get:197 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
116s Get:198 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
116s Get:199 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
116s Get:200 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
116s Get:201 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
116s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
116s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rstudioapi all 0.17.1-1 [299 kB]
116s Get:204 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB]
116s Get:205 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB]
117s Get:206 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmltable all 2.4.3-1 [388 kB]
117s Get:207 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB]
117s Get:208 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB]
117s Get:209 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB]
117s Get:210 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB]
117s Get:211 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB]
117s Get:212 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB]
117s Get:213 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-hmisc amd64 5.2-3-1 [3599 kB]
118s Preconfiguring packages ...
118s Fetched 194 MB in 8s (23.5 MB/s)
118s (Reading database ... 
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118s Preparing to unpack .../libperl5.40_5.40.1-3_amd64.deb ...
118s Unpacking libperl5.40:amd64 (5.40.1-3) over (5.40.1-2) ...
119s Preparing to unpack .../perl_5.40.1-3_amd64.deb ...
119s Unpacking perl (5.40.1-3) over (5.40.1-2) ...
119s Preparing to unpack .../perl-base_5.40.1-3_amd64.deb ...
119s Unpacking perl-base (5.40.1-3) over (5.40.1-2) ...
119s Setting up perl-base (5.40.1-3) ...
119s (Reading database ... 
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119s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ...
119s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2) ...
120s Preparing to unpack .../gcc-15-base_15.1.0-1ubuntu1_amd64.deb ...
120s Unpacking gcc-15-base:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
120s Setting up gcc-15-base:amd64 (15.1.0-1ubuntu1) ...
120s (Reading database ... 
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120s Preparing to unpack .../libgcc-s1_15.1.0-1ubuntu1_amd64.deb ...
120s Unpacking libgcc-s1:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
120s Setting up libgcc-s1:amd64 (15.1.0-1ubuntu1) ...
120s (Reading database ... 
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120s Preparing to unpack .../libatomic1_15.1.0-1ubuntu1_amd64.deb ...
120s Unpacking libatomic1:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
120s Preparing to unpack .../libstdc++6_15.1.0-1ubuntu1_amd64.deb ...
120s Unpacking libstdc++6:amd64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
120s Setting up libstdc++6:amd64 (15.1.0-1ubuntu1) ...
120s Selecting previously unselected package libblas3:amd64.
120s (Reading database ... 
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(Reading database ... 80514 files and directories currently installed.)
120s Preparing to unpack .../000-libblas3_3.12.1-2_amd64.deb ...
120s Unpacking libblas3:amd64 (3.12.1-2) ...
120s Selecting previously unselected package libgslcblas0:amd64.
120s Preparing to unpack .../001-libgslcblas0_2.8+dfsg-5ubuntu1_amd64.deb ...
120s Unpacking libgslcblas0:amd64 (2.8+dfsg-5ubuntu1) ...
120s Selecting previously unselected package libgsl28:amd64.
120s Preparing to unpack .../002-libgsl28_2.8+dfsg-5ubuntu1_amd64.deb ...
120s Unpacking libgsl28:amd64 (2.8+dfsg-5ubuntu1) ...
120s Selecting previously unselected package libgfortran5:amd64.
120s Preparing to unpack .../003-libgfortran5_15.1.0-1ubuntu1_amd64.deb ...
120s Unpacking libgfortran5:amd64 (15.1.0-1ubuntu1) ...
120s Selecting previously unselected package liblapack3:amd64.
120s Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ...
120s Unpacking liblapack3:amd64 (3.12.1-2) ...
120s Selecting previously unselected package libtmglib3:amd64.
120s Preparing to unpack .../005-libtmglib3_3.12.1-2_amd64.deb ...
120s Unpacking libtmglib3:amd64 (3.12.1-2) ...
120s Selecting previously unselected package liblapacke:amd64.
120s Preparing to unpack .../006-liblapacke_3.12.1-2_amd64.deb ...
120s Unpacking liblapacke:amd64 (3.12.1-2) ...
121s Selecting previously unselected package eigensoft.
121s Preparing to unpack .../007-eigensoft_8.0.0+dfsg-2build1_amd64.deb ...
121s Unpacking eigensoft (8.0.0+dfsg-2build1) ...
121s Selecting previously unselected package emmax.
121s Preparing to unpack .../008-emmax_0~beta.20100307-5_amd64.deb ...
121s Unpacking emmax (0~beta.20100307-5) ...
121s Selecting previously unselected package fonts-dejavu-mono.
121s Preparing to unpack .../009-fonts-dejavu-mono_2.37-8_all.deb ...
121s Unpacking fonts-dejavu-mono (2.37-8) ...
121s Selecting previously unselected package fonts-dejavu-core.
121s Preparing to unpack .../010-fonts-dejavu-core_2.37-8_all.deb ...
121s Unpacking fonts-dejavu-core (2.37-8) ...
121s Selecting previously unselected package fontconfig-config.
121s Preparing to unpack .../011-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ...
121s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
121s Selecting previously unselected package libfontconfig1:amd64.
121s Preparing to unpack .../012-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ...
121s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ...
121s Selecting previously unselected package fontconfig.
121s Preparing to unpack .../013-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ...
121s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
121s Selecting previously unselected package fonts-font-awesome.
121s Preparing to unpack .../014-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
121s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
121s Selecting previously unselected package fonts-glyphicons-halflings.
121s Preparing to unpack .../015-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-4_all.deb ...
121s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-4) ...
121s Selecting previously unselected package fonts-mathjax.
121s Preparing to unpack .../016-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
121s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
121s Selecting previously unselected package javascript-common.
121s Preparing to unpack .../017-javascript-common_12_all.deb ...
121s Unpacking javascript-common (12) ...
121s Selecting previously unselected package libb-hooks-op-check-perl:amd64.
121s Preparing to unpack .../018-libb-hooks-op-check-perl_0.22-3build2_amd64.deb ...
121s Unpacking libb-hooks-op-check-perl:amd64 (0.22-3build2) ...
121s Selecting previously unselected package libpixman-1-0:amd64.
121s Preparing to unpack .../019-libpixman-1-0_0.44.0-3_amd64.deb ...
121s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
121s Selecting previously unselected package libxcb-render0:amd64.
121s Preparing to unpack .../020-libxcb-render0_1.17.0-2_amd64.deb ...
121s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
122s Selecting previously unselected package libxcb-shm0:amd64.
122s Preparing to unpack .../021-libxcb-shm0_1.17.0-2_amd64.deb ...
122s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
122s Selecting previously unselected package libxrender1:amd64.
122s Preparing to unpack .../022-libxrender1_1%3a0.9.12-1_amd64.deb ...
122s Unpacking libxrender1:amd64 (1:0.9.12-1) ...
122s Selecting previously unselected package libcairo2:amd64.
122s Preparing to unpack .../023-libcairo2_1.18.4-1_amd64.deb ...
122s Unpacking libcairo2:amd64 (1.18.4-1) ...
122s Selecting previously unselected package libclass-method-modifiers-perl.
122s Preparing to unpack .../024-libclass-method-modifiers-perl_2.15-1_all.deb ...
122s Unpacking libclass-method-modifiers-perl (2.15-1) ...
122s Selecting previously unselected package libclass-xsaccessor-perl.
122s Preparing to unpack .../025-libclass-xsaccessor-perl_1.19-4build6_amd64.deb ...
122s Unpacking libclass-xsaccessor-perl (1.19-4build6) ...
122s Selecting previously unselected package libdatrie1:amd64.
122s Preparing to unpack .../026-libdatrie1_0.2.13-3build1_amd64.deb ...
122s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
122s Selecting previously unselected package libdeflate0:amd64.
122s Preparing to unpack .../027-libdeflate0_1.23-2_amd64.deb ...
122s Unpacking libdeflate0:amd64 (1.23-2) ...
122s Selecting previously unselected package libdynaloader-functions-perl.
122s Preparing to unpack .../028-libdynaloader-functions-perl_0.004-2_all.deb ...
122s Unpacking libdynaloader-functions-perl (0.004-2) ...
122s Selecting previously unselected package libdevel-callchecker-perl:amd64.
122s Preparing to unpack .../029-libdevel-callchecker-perl_0.009-2_amd64.deb ...
122s Unpacking libdevel-callchecker-perl:amd64 (0.009-2) ...
122s Selecting previously unselected package libfile-slurp-perl.
122s Preparing to unpack .../030-libfile-slurp-perl_9999.32-2_all.deb ...
122s Unpacking libfile-slurp-perl (9999.32-2) ...
122s Selecting previously unselected package libgomp1:amd64.
122s Preparing to unpack .../031-libgomp1_15.1.0-1ubuntu1_amd64.deb ...
122s Unpacking libgomp1:amd64 (15.1.0-1ubuntu1) ...
122s Selecting previously unselected package libgraphite2-3:amd64.
122s Preparing to unpack .../032-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
122s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
122s Selecting previously unselected package libharfbuzz0b:amd64.
122s Preparing to unpack .../033-libharfbuzz0b_10.2.0-1_amd64.deb ...
122s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
122s Selecting previously unselected package x11-common.
122s Preparing to unpack .../034-x11-common_1%3a7.7+23ubuntu4_all.deb ...
122s Unpacking x11-common (1:7.7+23ubuntu4) ...
122s Selecting previously unselected package libice6:amd64.
122s Preparing to unpack .../035-libice6_2%3a1.1.1-1_amd64.deb ...
122s Unpacking libice6:amd64 (2:1.1.1-1) ...
122s Selecting previously unselected package libparams-classify-perl:amd64.
122s Preparing to unpack .../036-libparams-classify-perl_0.015-2build6_amd64.deb ...
122s Unpacking libparams-classify-perl:amd64 (0.015-2build6) ...
122s Selecting previously unselected package libmodule-runtime-perl.
122s Preparing to unpack .../037-libmodule-runtime-perl_0.018-1_all.deb ...
122s Unpacking libmodule-runtime-perl (0.018-1) ...
122s Selecting previously unselected package libimport-into-perl.
122s Preparing to unpack .../038-libimport-into-perl_1.002005-2_all.deb ...
122s Unpacking libimport-into-perl (1.002005-2) ...
122s Selecting previously unselected package libjpeg-turbo8:amd64.
122s Preparing to unpack .../039-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
122s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
122s Selecting previously unselected package libjpeg8:amd64.
122s Preparing to unpack .../040-libjpeg8_8c-2ubuntu11_amd64.deb ...
122s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
122s Selecting previously unselected package libjs-bootstrap.
122s Preparing to unpack .../041-libjs-bootstrap_3.4.1+dfsg-4_all.deb ...
122s Unpacking libjs-bootstrap (3.4.1+dfsg-4) ...
122s Selecting previously unselected package libjs-popper.js.
122s Preparing to unpack .../042-libjs-popper.js_1.16.1+ds-6_all.deb ...
122s Unpacking libjs-popper.js (1.16.1+ds-6) ...
122s Selecting previously unselected package libjs-bootstrap4.
122s Preparing to unpack .../043-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ...
122s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ...
123s Selecting previously unselected package libjs-d3.
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124s Selecting previously unselected package r-base-core.
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125s Selecting previously unselected package r-cran-littler.
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125s Selecting previously unselected package littler.
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125s Selecting previously unselected package node-bootstrap-sass.
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125s Selecting previously unselected package node-html5shiv.
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125s Selecting previously unselected package node-normalize.css.
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125s Selecting previously unselected package pandoc-data.
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125s Selecting previously unselected package pandoc.
125s Preparing to unpack .../089-pandoc_3.1.11.1+ds-2_amd64.deb ...
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126s Selecting previously unselected package plink1.9.
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126s Unpacking plink1.9 (1.90~b7.7-241022-1) ...
126s Selecting previously unselected package r-cran-getopt.
126s Preparing to unpack .../091-r-cran-getopt_1.20.4-1_all.deb ...
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126s Selecting previously unselected package r-cran-colorspace.
126s Preparing to unpack .../092-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ...
126s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
126s Selecting previously unselected package r-cran-fracdiff.
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126s Selecting previously unselected package r-cran-generics.
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126s Selecting previously unselected package r-cran-cli.
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126s Selecting previously unselected package r-cran-glue.
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127s Selecting previously unselected package r-cran-gtable.
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127s Selecting previously unselected package r-cran-isoband.
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127s Selecting previously unselected package r-cran-farver.
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127s Selecting previously unselected package r-cran-munsell.
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127s Selecting previously unselected package r-cran-r6.
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127s Selecting previously unselected package r-cran-rcolorbrewer.
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127s Selecting previously unselected package r-cran-viridislite.
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127s Selecting previously unselected package r-cran-magrittr.
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128s Selecting previously unselected package r-cran-pillar.
128s Preparing to unpack .../117-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
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128s Selecting previously unselected package r-cran-pkgconfig.
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128s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
128s Selecting previously unselected package r-cran-tibble.
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128s Selecting previously unselected package r-cran-withr.
128s Preparing to unpack .../120-r-cran-withr_3.0.2+dfsg-1_all.deb ...
128s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
128s Selecting previously unselected package r-cran-ggplot2.
128s Preparing to unpack .../121-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
128s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
128s Selecting previously unselected package r-cran-zoo.
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128s Selecting previously unselected package r-cran-lmtest.
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128s Selecting previously unselected package r-cran-nnet.
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128s Selecting previously unselected package r-cran-pkgkitten.
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128s Selecting previously unselected package r-cran-rcpp.
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128s Selecting previously unselected package r-cran-timedate.
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128s Selecting previously unselected package r-cran-quadprog.
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128s Unpacking r-cran-quadprog (1.5-8-1build1) ...
128s Selecting previously unselected package r-cran-xts.
128s Preparing to unpack .../129-r-cran-xts_0.14.1-1_amd64.deb ...
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128s Selecting previously unselected package r-cran-curl.
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128s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
129s Selecting previously unselected package r-cran-ttr.
129s Preparing to unpack .../131-r-cran-ttr_0.24.4-1_amd64.deb ...
129s Unpacking r-cran-ttr (0.24.4-1) ...
129s Selecting previously unselected package r-cran-jsonlite.
129s Preparing to unpack .../132-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ...
129s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
129s Selecting previously unselected package r-cran-quantmod.
129s Preparing to unpack .../133-r-cran-quantmod_0.4.27-1_all.deb ...
129s Unpacking r-cran-quantmod (0.4.27-1) ...
129s Selecting previously unselected package r-cran-tseries.
129s Preparing to unpack .../134-r-cran-tseries_0.10-58-1_amd64.deb ...
129s Unpacking r-cran-tseries (0.10-58-1) ...
129s Selecting previously unselected package r-cran-urca.
129s Preparing to unpack .../135-r-cran-urca_1.3-4-1_amd64.deb ...
129s Unpacking r-cran-urca (1.3-4-1) ...
129s Selecting previously unselected package r-cran-rcpparmadillo.
129s Preparing to unpack .../136-r-cran-rcpparmadillo_14.4.2-1-1_amd64.deb ...
129s Unpacking r-cran-rcpparmadillo (14.4.2-1-1) ...
129s Selecting previously unselected package r-cran-forecast.
129s Preparing to unpack .../137-r-cran-forecast_8.23.0-1_amd64.deb ...
129s Unpacking r-cran-forecast (8.23.0-1) ...
129s Selecting previously unselected package r-bioc-biocgenerics.
129s Preparing to unpack .../138-r-bioc-biocgenerics_0.52.0-2_all.deb ...
129s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
129s Selecting previously unselected package r-bioc-biobase.
129s Preparing to unpack .../139-r-bioc-biobase_2.66.0-2_amd64.deb ...
129s Unpacking r-bioc-biobase (2.66.0-2) ...
129s Selecting previously unselected package r-cran-survival.
129s Preparing to unpack .../140-r-cran-survival_3.8-3-1_amd64.deb ...
129s Unpacking r-cran-survival (3.8-3-1) ...
129s Selecting previously unselected package r-bioc-multtest.
129s Preparing to unpack .../141-r-bioc-multtest_2.62.0-2_amd64.deb ...
129s Unpacking r-bioc-multtest (2.62.0-2) ...
129s Selecting previously unselected package r-cran-optparse.
129s Preparing to unpack .../142-r-cran-optparse_1.7.5-1_all.deb ...
129s Unpacking r-cran-optparse (1.7.5-1) ...
129s Selecting previously unselected package r-cran-uroot.
129s Preparing to unpack .../143-r-cran-uroot_2.1-3-1_all.deb ...
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129s Selecting previously unselected package pique.
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129s Selecting previously unselected package r-cran-acepack.
130s Preparing to unpack .../146-r-cran-acepack_1.6.1-1_amd64.deb ...
130s Unpacking r-cran-acepack (1.6.1-1) ...
130s Selecting previously unselected package r-cran-backports.
130s Preparing to unpack .../147-r-cran-backports_1.5.0-2_amd64.deb ...
130s Unpacking r-cran-backports (1.5.0-2) ...
130s Selecting previously unselected package r-cran-base64enc.
130s Preparing to unpack .../148-r-cran-base64enc_0.1-3-3_amd64.deb ...
130s Unpacking r-cran-base64enc (0.1-3-3) ...
130s Selecting previously unselected package r-cran-fastmap.
130s Preparing to unpack .../149-r-cran-fastmap_1.2.0-1_amd64.deb ...
130s Unpacking r-cran-fastmap (1.2.0-1) ...
130s Selecting previously unselected package r-cran-cachem.
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130s Selecting previously unselected package r-cran-digest.
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130s Selecting previously unselected package r-cran-htmltools.
130s Preparing to unpack .../152-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
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130s Selecting previously unselected package r-cran-jquerylib.
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130s Selecting previously unselected package r-cran-memoise.
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130s Selecting previously unselected package r-cran-mime.
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130s Selecting previously unselected package r-cran-fs.
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130s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
130s Selecting previously unselected package r-cran-rappdirs.
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130s Unpacking r-cran-rappdirs (0.3.3-1) ...
130s Selecting previously unselected package r-cran-sass.
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130s Selecting previously unselected package r-cran-bslib.
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130s Unpacking r-cran-bslib (0.9.0+dfsg-3) ...
130s Selecting previously unselected package r-cran-checkmate.
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130s Unpacking r-cran-checkmate (2.3.2-1) ...
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131s Selecting previously unselected package r-cran-cpp11.
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131s Selecting previously unselected package r-cran-crayon.
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131s Selecting previously unselected package r-cran-data.table.
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131s Unpacking r-cran-data.table (1.17.0+dfsg-1) ...
131s Selecting previously unselected package r-cran-deldir.
131s Preparing to unpack .../167-r-cran-deldir_2.0-4-1build1_amd64.deb ...
131s Unpacking r-cran-deldir (2.0-4-1build1) ...
131s Selecting previously unselected package r-cran-tidyselect.
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131s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
131s Selecting previously unselected package r-cran-dplyr.
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131s Unpacking r-cran-dplyr (1.1.4-4) ...
131s Selecting previously unselected package r-cran-evaluate.
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131s Unpacking r-cran-evaluate (1.0.3-1) ...
131s Selecting previously unselected package r-cran-fontawesome.
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131s Unpacking r-cran-fontawesome (0.5.3-1) ...
131s Selecting previously unselected package r-cran-foreign.
131s Preparing to unpack .../172-r-cran-foreign_0.8.90-1_amd64.deb ...
131s Unpacking r-cran-foreign (0.8.90-1) ...
131s Selecting previously unselected package r-cran-formula.
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131s Selecting previously unselected package r-cran-xfun.
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131s Selecting previously unselected package r-cran-highr.
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131s Selecting previously unselected package r-cran-rpart.
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131s Selecting previously unselected package r-cran-stringi.
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132s Selecting previously unselected package r-cran-yaml.
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132s Selecting previously unselected package r-cran-knitr.
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132s Unpacking r-cran-knitr (1.50+dfsg-1) ...
132s Selecting previously unselected package r-cran-tinytex.
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133s Selecting previously unselected package r-cran-later.
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133s Unpacking r-cran-later (1.4.1+dfsg-1) ...
133s Selecting previously unselected package r-cran-promises.
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133s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
133s Selecting previously unselected package r-cran-httpuv.
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133s Selecting previously unselected package r-cran-xtable.
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133s Selecting previously unselected package r-cran-sourcetools.
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133s Selecting previously unselected package r-cran-shiny.
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133s Selecting previously unselected package r-cran-rmarkdown.
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134s Setting up libjs-json (0~20221030+~1.0.8-1) ...
134s Setting up javascript-common (12) ...
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137s Setting up libparams-classify-perl:amd64 (0.015-2build6) ...
137s Setting up libmodule-runtime-perl (0.018-1) ...
137s Setting up r-base-core (4.5.0-3) ...
137s Creating config file /etc/R/Renviron with new version
138s Setting up r-cran-crayon (1.5.3-1) ...
138s Setting up r-cran-labeling (0.4.3-1) ...
138s Setting up r-cran-sourcetools (0.1.7-1-1) ...
138s Setting up r-cran-lattice (0.22-7-1) ...
138s Setting up r-cran-nlme (3.1.168-1) ...
138s Setting up r-cran-farver (2.1.2-1) ...
138s Setting up r-cran-formula (1.2-5-1) ...
138s Setting up r-cran-viridislite (0.4.2-2) ...
138s Setting up r-cran-cluster (2.1.8.1-1) ...
138s Setting up r-cran-nnet (7.3-20-1) ...
138s Setting up r-cran-commonmark (1.9.5-1) ...
138s Setting up r-cran-r6 (2.6.1-1) ...
138s Setting up r-cran-pkgkitten (0.2.4-1) ...
138s Setting up r-cran-jpeg (0.1-10-1) ...
138s Setting up r-cran-chron (2.3-62-1) ...
138s Setting up r-cran-magrittr (2.0.3-1) ...
138s Setting up r-cran-rappdirs (0.3.3-1) ...
138s Setting up r-cran-quadprog (1.5-8-1build1) ...
138s Setting up r-cran-littler (0.3.21-1) ...
138s Setting up r-cran-fs (1.6.5+dfsg-1) ...
138s Setting up r-cran-rcpp (1.0.14-1) ...
138s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
138s Setting up r-bioc-biocgenerics (0.52.0-2) ...
138s Setting up r-cran-rlang (1.1.5-3) ...
138s Setting up littler (0.3.21-1) ...
138s Setting up r-cran-uroot (2.1-3-1) ...
138s Setting up r-cran-xfun (0.51+dfsg-1) ...
138s Setting up r-cran-urca (1.3-4-1) ...
138s Setting up r-cran-withr (3.0.2+dfsg-1) ...
138s Setting up r-cran-backports (1.5.0-2) ...
138s Setting up r-cran-mime (0.12-2) ...
138s Setting up r-cran-generics (0.1.3-1) ...
138s Setting up libimport-into-perl (1.002005-2) ...
138s Setting up r-cran-base64enc (0.1-3-3) ...
138s Setting up libmoo-perl (2.005005-1) ...
138s Setting up r-cran-digest (0.6.37-1) ...
138s Setting up r-cran-yaml (2.3.10-1) ...
138s Setting up r-cran-evaluate (1.0.3-1) ...
138s Setting up r-cran-timedate (4041.110-1) ...
138s Setting up r-cran-highr (0.11+dfsg-1) ...
138s Setting up r-cran-fansi (1.0.6-1ubuntu1) ...
138s Setting up r-cran-mass (7.3-65-1) ...
138s Setting up r-cran-checkmate (2.3.2-1) ...
138s Setting up r-cran-acepack (1.6.1-1) ...
138s Setting up r-cran-data.table (1.17.0+dfsg-1) ...
138s Setting up r-cran-glue (1.8.0-1) ...
138s Setting up r-cran-foreign (0.8.90-1) ...
138s Setting up r-cran-fracdiff (1.5-3-1) ...
138s Setting up r-cran-xtable (1:1.8-4-2) ...
138s Setting up r-cran-cli (3.6.4-1) ...
138s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
138s Setting up r-cran-deldir (2.0-4-1build1) ...
138s Setting up r-cran-fastmap (1.2.0-1) ...
138s Setting up r-cran-png (0.1-8-1build2) ...
138s Setting up r-bioc-biobase (2.66.0-2) ...
138s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
138s Setting up r-cran-rstudioapi (0.17.1-1) ...
138s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
138s Setting up r-cran-getopt (1.20.4-1) ...
138s Setting up r-cran-utf8 (1.2.4-1) ...
138s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
138s Setting up r-cran-stringi (1.8.4-1build1) ...
138s Setting up r-cran-cpp11 (0.5.2-1) ...
138s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
138s Setting up r-cran-isoband (0.2.7-1) ...
138s Setting up libparallel-forkmanager-perl (2.03-1) ...
138s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
138s Setting up r-cran-zoo (1.8-14-1) ...
138s Setting up r-cran-later (1.4.1+dfsg-1) ...
138s Setting up r-cran-matrix (1.7-3-1) ...
138s Setting up r-cran-htmltools (0.5.8.1-1) ...
138s Setting up r-cran-tinytex (0.56-1) ...
138s Setting up r-cran-knitr (1.50+dfsg-1) ...
138s Setting up r-cran-mgcv (1.9-3-1) ...
138s Setting up r-cran-cachem (1.1.0-1) ...
138s Setting up r-cran-lmtest (0.9.40-1) ...
138s Setting up r-cran-sass (0.4.9+dfsg-1) ...
138s Setting up r-cran-rcpparmadillo (14.4.2-1-1) ...
138s Setting up r-cran-optparse (1.7.5-1) ...
138s Setting up r-cran-vctrs (0.6.5-1) ...
138s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
138s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
138s Setting up r-cran-stringr (1.5.1-1) ...
138s Setting up r-cran-munsell (0.5.1-1) ...
138s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
138s Setting up r-cran-fontawesome (0.5.3-1) ...
138s Setting up r-cran-survival (3.8-3-1) ...
138s Setting up r-cran-xts (0.14.1-1) ...
138s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
138s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
138s Setting up r-cran-interp (1.1-6-1) ...
138s Setting up r-cran-gridextra (2.3-3build1) ...
138s Setting up r-cran-scales (1.3.0-1) ...
138s Setting up r-cran-memoise (2.0.1-1) ...
138s Setting up r-cran-promises (1.3.2+dfsg-1) ...
138s Setting up r-cran-purrr (1.0.4-1) ...
138s Setting up r-cran-dplyr (1.1.4-4) ...
138s Setting up r-cran-ttr (0.24.4-1) ...
138s Setting up r-bioc-multtest (2.62.0-2) ...
138s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
138s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
138s Setting up r-cran-rpart (4.1.24-1) ...
138s Setting up r-cran-latticeextra (0.6-30-1) ...
138s Setting up r-cran-viridis (0.6.5-1) ...
138s Setting up r-cran-bslib (0.9.0+dfsg-3) ...
138s Setting up r-cran-tidyr (1.3.1-1) ...
138s Setting up r-cran-quantmod (0.4.27-1) ...
138s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
138s Setting up r-cran-tseries (0.10-58-1) ...
138s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
138s Setting up r-cran-forecast (8.23.0-1) ...
138s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
138s Setting up pique (1.1-1) ...
138s Setting up r-cran-htmltable (2.4.3-1) ...
138s Setting up r-cran-hmisc (5.2-3-1) ...
138s Processing triggers for man-db (2.13.0-1) ...
139s Processing triggers for install-info (7.1.1-1) ...
140s Processing triggers for libc-bin (2.41-6ubuntu1) ...
141s autopkgtest [23:12:55]: testbed environment configured for cross-architecture building
141s autopkgtest [23:12:55]: test run-unit-test: [-----------------------
141s Targets:
141s 	input
141s 	run
141s 	trans
141s 	group
141s 	test_vcf
141s 	ld
141s 	blocks
141s 	plot
141s 	all
142s autopkgtest [23:12:56]: test run-unit-test: -----------------------]
142s run-unit-test        PASS
142s autopkgtest [23:12:56]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
143s autopkgtest [23:12:57]: @@@@@@@@@@@@@@@@@@@@ summary
143s run-unit-test        PASS
159s nova [W] Skipping flock for amd64
159s Creating nova instance adt-questing-i386-pique-20250502-231034-juju-7f2275-prod-proposed-migration-environment-2-9c183f26-8da9-4211-974c-4d3118325d25 from image adt/ubuntu-questing-amd64-server-20250502.img (UUID 9956ea44-e870-4bd8-8ad1-dc5f8a09f1f9)...
159s nova [W] Timed out waiting for 3fc74a86-25f3-47bd-b317-77adee176170 to get deleted.