0s autopkgtest [08:26:17]: starting date and time: 2025-05-03 08:26:17+0000 0s autopkgtest [08:26:17]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [08:26:17]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0597sygl/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-rlang,src:diffoscope,src:lmod,src:r-base,src:r-bioc-bioccheck,src:r-cran-sf --apt-upgrade r-cran-seurat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-rlang/1.1.5-3 diffoscope/294 lmod/8.7.59-2 r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2 r-cran-sf/1.0-19+dfsg-2' -- lxd -r lxd-armhf-10.145.243.79 lxd-armhf-10.145.243.79:autopkgtest/ubuntu/questing/armhf 19s autopkgtest [08:26:36]: testbed dpkg architecture: armhf 21s autopkgtest [08:26:38]: testbed apt version: 3.0.0 25s autopkgtest [08:26:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 26s autopkgtest [08:26:43]: testbed release detected to be: None 34s autopkgtest [08:26:51]: updating testbed package index (apt update) 36s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 36s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 36s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 36s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 36s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [155 kB] 36s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.6 kB] 36s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1664 kB] 36s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [170 kB] 36s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1240 kB] 36s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.7 kB] 36s Get:11 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 36s Get:12 http://ftpmaster.internal/ubuntu questing/main Sources [1392 kB] 36s Get:13 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 37s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 37s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [15.0 MB] 37s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 41s Fetched 43.1 MB in 5s (7937 kB/s) 42s Reading package lists... 48s autopkgtest [08:27:05]: upgrading testbed (apt dist-upgrade and autopurge) 49s Reading package lists... 50s Building dependency tree... 50s Reading state information... 50s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 50s Starting 2 pkgProblemResolver with broken count: 0 50s Done 51s Entering ResolveByKeep 51s 51s Calculating upgrade... 52s The following packages will be upgraded: 52s base-files debianutils distro-info-data dpkg dpkg-dev ed fwupd htop 52s libdpkg-perl libftdi1-2 libfwupd3 libnftnl11 libnpth0t64 libnvme1t64 52s libsensors-config libsensors5 liburcu8t64 motd-news-config nano 52s python3-lazr.restfulclient ubuntu-pro-client ubuntu-pro-client-l10n usb.ids 52s 23 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s Need to get 5627 kB of archives. 52s After this operation, 3533 kB disk space will be freed. 52s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 52s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 52s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf debianutils armhf 5.22 [92.2 kB] 52s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 53s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 53s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 53s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 53s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 53s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 53s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libnftnl11 armhf 1.2.9-1 [53.3 kB] 53s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 53s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 53s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 53s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 53s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 53s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 53s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 53s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 53s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 53s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 53s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 53s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 53s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 53s Fetched 5627 kB in 1s (6799 kB/s) 53s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 53s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 53s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 53s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 53s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 54s Setting up base-files (13.7ubuntu1) ... 54s Installing new version of config file /etc/issue ... 54s Installing new version of config file /etc/issue.net ... 54s Installing new version of config file /etc/lsb-release ... 54s motd-news.service is a disabled or a static unit not running, not starting it. 54s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 54s Preparing to unpack .../debianutils_5.22_armhf.deb ... 54s Unpacking debianutils (5.22) over (5.21) ... 54s Setting up debianutils (5.22) ... 54s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 54s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 54s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 55s Setting up dpkg (1.22.18ubuntu3) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 55s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 55s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 55s Setting up libnpth0t64:armhf (1.8-3) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 55s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 55s Unpacking distro-info-data (0.64) over (0.63) ... 55s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 55s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 55s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 55s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 55s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 55s Unpacking ed (1.21.1-1) over (1.21-1) ... 55s Preparing to unpack .../04-libnftnl11_1.2.9-1_armhf.deb ... 55s Unpacking libnftnl11:armhf (1.2.9-1) over (1.2.8-1) ... 55s Preparing to unpack .../05-libsensors-config_1%3a3.6.2-2_all.deb ... 55s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 55s Preparing to unpack .../06-libsensors5_1%3a3.6.2-2_armhf.deb ... 55s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 55s Preparing to unpack .../07-liburcu8t64_0.15.2-2_armhf.deb ... 55s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 56s Preparing to unpack .../08-nano_8.4-1_armhf.deb ... 56s Unpacking nano (8.4-1) over (8.3-1) ... 56s Preparing to unpack .../09-usb.ids_2025.04.01-1_all.deb ... 56s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 56s Preparing to unpack .../10-dpkg-dev_1.22.18ubuntu3_all.deb ... 56s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 56s Preparing to unpack .../11-libdpkg-perl_1.22.18ubuntu3_all.deb ... 56s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 56s Preparing to unpack .../12-fwupd_2.0.8-3_armhf.deb ... 56s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 56s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 56s Preparing to unpack .../13-libfwupd3_2.0.8-3_armhf.deb ... 56s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 56s Preparing to unpack .../14-htop_3.4.1-4_armhf.deb ... 56s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 56s Preparing to unpack .../15-libftdi1-2_1.5-10_armhf.deb ... 56s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 56s Preparing to unpack .../16-libnvme1t64_1.13-2_armhf.deb ... 56s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 56s Preparing to unpack .../17-python3-lazr.restfulclient_0.14.6-3_all.deb ... 56s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 56s Setting up motd-news-config (13.7ubuntu1) ... 56s Setting up liburcu8t64:armhf (0.15.2-2) ... 56s Setting up distro-info-data (0.64) ... 56s Setting up htop (3.4.1-4) ... 56s Setting up libsensors-config (1:3.6.2-2) ... 56s Installing new version of config file /etc/sensors3.conf ... 56s Setting up libnftnl11:armhf (1.2.9-1) ... 56s Setting up libfwupd3:armhf (2.0.8-3) ... 56s Setting up libftdi1-2:armhf (1.5-10) ... 56s Setting up libnvme1t64 (1.13-2) ... 56s Setting up ed (1.21.1-1) ... 56s Setting up usb.ids (2025.04.01-1) ... 56s Setting up libsensors5:armhf (1:3.6.2-2) ... 56s Setting up libdpkg-perl (1.22.18ubuntu3) ... 56s Setting up nano (8.4-1) ... 56s Installing new version of config file /etc/nanorc ... 56s Setting up python3-lazr.restfulclient (0.14.6-3) ... 57s Setting up ubuntu-pro-client (35.1ubuntu0) ... 57s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 57s 57s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 57s 57s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 57s 58s Setting up fwupd (2.0.8-3) ... 59s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 59s fwupd.service is a disabled or a static unit not running, not starting it. 59s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 59s Setting up dpkg-dev (1.22.18ubuntu3) ... 59s Processing triggers for dbus (1.16.2-2ubuntu1) ... 59s Processing triggers for install-info (7.1.1-1) ... 59s Processing triggers for libc-bin (2.41-6ubuntu1) ... 59s Processing triggers for man-db (2.13.0-1) ... 61s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 61s Processing triggers for initramfs-tools (0.147ubuntu1) ... 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s Starting pkgProblemResolver with broken count: 0 63s Starting 2 pkgProblemResolver with broken count: 0 63s Done 64s Solving dependencies... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 66s autopkgtest [08:27:23]: rebooting testbed after setup commands that affected boot 104s autopkgtest [08:28:01]: testbed running kernel: Linux 6.8.0-58-generic #60~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 28 14:48:37 UTC 2 127s autopkgtest [08:28:24]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-seurat 137s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-cran-seurat 5.2.1-4 (dsc) [3403 B] 137s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-cran-seurat 5.2.1-4 (tar) [2088 kB] 137s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-cran-seurat 5.2.1-4 (diff) [4972 B] 137s gpgv: Signature made Sat Feb 15 13:46:27 2025 UTC 137s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 137s gpgv: issuer "crusoe@debian.org" 137s gpgv: Can't check signature: No public key 137s dpkg-source: warning: cannot verify inline signature for ./r-cran-seurat_5.2.1-4.dsc: no acceptable signature found 138s autopkgtest [08:28:35]: testing package r-cran-seurat version 5.2.1-4 140s run-unit-test SKIP Test declares architecture as not supported: armhf 140s pkg-r-autopkgtest SKIP Test declares architecture as not supported: armhf 140s autopkgtest [08:28:37]: build not needed 144s run-unit-test SKIP Test declares architecture as not supported: armhf 144s pkg-r-autopkgtest SKIP Test declares architecture as not supported: armhf 144s autopkgtest [08:28:41]: @@@@@@@@@@@@@@@@@@@@ summary 144s run-unit-test SKIP Test declares architecture as not supported: armhf 144s pkg-r-autopkgtest SKIP Test declares architecture as not supported: armhf 144s run-unit-test SKIP Test declares architecture as not supported: armhf 144s pkg-r-autopkgtest SKIP Test declares architecture as not supported: armhf