0s autopkgtest [02:24:18]: starting date and time: 2025-05-03 02:24:18+0000 0s autopkgtest [02:24:18]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [02:24:18]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ktuv55rj/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:nlme --apt-upgrade r-bioc-qusage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=nlme/3.1.168-1 -- lxd -r lxd-armhf-10.145.243.240 lxd-armhf-10.145.243.240:autopkgtest/ubuntu/questing/armhf 20s autopkgtest [02:24:38]: testbed dpkg architecture: armhf 21s autopkgtest [02:24:39]: testbed apt version: 3.0.0 25s autopkgtest [02:24:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 27s autopkgtest [02:24:45]: testbed release detected to be: None 34s autopkgtest [02:24:52]: updating testbed package index (apt update) 36s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 36s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 36s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 36s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 36s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.3 kB] 37s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1920 kB] 37s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB] 37s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [204 kB] 37s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1378 kB] 37s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.5 kB] 37s Get:11 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 37s Get:12 http://ftpmaster.internal/ubuntu questing/main Sources [1395 kB] 37s Get:13 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 39s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 39s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [14.9 MB] 40s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 43s Fetched 43.3 MB in 7s (6247 kB/s) 44s Reading package lists... 50s autopkgtest [02:25:08]: upgrading testbed (apt dist-upgrade and autopurge) 51s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 53s Starting 2 pkgProblemResolver with broken count: 0 53s Done 53s Entering ResolveByKeep 54s 54s Calculating upgrade... 55s The following packages will be upgraded: 55s base-files distro-info-data dpkg dpkg-dev ed fwupd htop libdpkg-perl 55s libftdi1-2 libfwupd3 libnpth0t64 libnvme1t64 libsensors-config libsensors5 55s liburcu8t64 motd-news-config nano ubuntu-pro-client ubuntu-pro-client-l10n 55s usb.ids 55s 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 5431 kB of archives. 55s After this operation, 3722 kB disk space will be freed. 55s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 55s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 55s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 55s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 55s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 55s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 55s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 55s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 55s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 55s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 55s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 55s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 55s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 55s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 55s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 55s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 55s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 55s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 55s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 55s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 56s Fetched 5431 kB in 1s (6511 kB/s) 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 56s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 56s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 56s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 56s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 56s Setting up base-files (13.7ubuntu1) ... 56s Installing new version of config file /etc/issue ... 56s Installing new version of config file /etc/issue.net ... 56s Installing new version of config file /etc/lsb-release ... 57s motd-news.service is a disabled or a static unit not running, not starting it. 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 57s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 57s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 57s Setting up dpkg (1.22.18ubuntu3) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 58s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 58s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 58s Setting up libnpth0t64:armhf (1.8-3) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 58s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 58s Unpacking distro-info-data (0.64) over (0.63) ... 58s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 58s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 58s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 58s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 58s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 58s Unpacking ed (1.21.1-1) over (1.21-1) ... 58s Preparing to unpack .../04-libsensors-config_1%3a3.6.2-2_all.deb ... 58s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 58s Preparing to unpack .../05-libsensors5_1%3a3.6.2-2_armhf.deb ... 58s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 58s Preparing to unpack .../06-liburcu8t64_0.15.2-2_armhf.deb ... 58s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 58s Preparing to unpack .../07-nano_8.4-1_armhf.deb ... 58s Unpacking nano (8.4-1) over (8.3-1) ... 58s Preparing to unpack .../08-usb.ids_2025.04.01-1_all.deb ... 58s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 58s Preparing to unpack .../09-dpkg-dev_1.22.18ubuntu3_all.deb ... 58s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 58s Preparing to unpack .../10-libdpkg-perl_1.22.18ubuntu3_all.deb ... 58s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 59s Preparing to unpack .../11-fwupd_2.0.8-3_armhf.deb ... 59s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 59s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 59s Preparing to unpack .../12-libfwupd3_2.0.8-3_armhf.deb ... 59s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 59s Preparing to unpack .../13-htop_3.4.1-4_armhf.deb ... 59s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 59s Preparing to unpack .../14-libftdi1-2_1.5-10_armhf.deb ... 59s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 59s Preparing to unpack .../15-libnvme1t64_1.13-2_armhf.deb ... 59s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 59s Setting up motd-news-config (13.7ubuntu1) ... 59s Setting up liburcu8t64:armhf (0.15.2-2) ... 59s Setting up distro-info-data (0.64) ... 59s Setting up htop (3.4.1-4) ... 59s Setting up libsensors-config (1:3.6.2-2) ... 59s Installing new version of config file /etc/sensors3.conf ... 59s Setting up libfwupd3:armhf (2.0.8-3) ... 59s Setting up libftdi1-2:armhf (1.5-10) ... 59s Setting up libnvme1t64 (1.13-2) ... 59s Setting up ed (1.21.1-1) ... 59s Setting up usb.ids (2025.04.01-1) ... 59s Setting up libsensors5:armhf (1:3.6.2-2) ... 59s Setting up libdpkg-perl (1.22.18ubuntu3) ... 59s Setting up nano (8.4-1) ... 59s Installing new version of config file /etc/nanorc ... 59s Setting up ubuntu-pro-client (35.1ubuntu0) ... 59s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 59s 59s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 59s 59s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 59s 61s Setting up fwupd (2.0.8-3) ... 61s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 61s fwupd.service is a disabled or a static unit not running, not starting it. 61s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 61s Setting up dpkg-dev (1.22.18ubuntu3) ... 61s Processing triggers for dbus (1.16.2-2ubuntu1) ... 61s Processing triggers for install-info (7.1.1-1) ... 62s Processing triggers for libc-bin (2.41-6ubuntu1) ... 62s Processing triggers for man-db (2.13.0-1) ... 64s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 64s Processing triggers for initramfs-tools (0.147ubuntu1) ... 65s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Starting pkgProblemResolver with broken count: 0 66s Starting 2 pkgProblemResolver with broken count: 0 66s Done 67s Solving dependencies... 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s autopkgtest [02:25:27]: rebooting testbed after setup commands that affected boot 109s autopkgtest [02:26:07]: testbed running kernel: Linux 6.8.0-58-generic #60~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 28 14:48:37 UTC 2 133s autopkgtest [02:26:31]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-qusage 143s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (dsc) [2129 B] 143s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (tar) [10.1 MB] 143s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (diff) [3532 B] 143s gpgv: Signature made Sun Jan 12 02:53:53 2025 UTC 143s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 143s gpgv: issuer "crusoe@debian.org" 143s gpgv: Can't check signature: No public key 143s dpkg-source: warning: cannot verify inline signature for ./r-bioc-qusage_2.40.0-2.dsc: no acceptable signature found 143s autopkgtest [02:26:41]: testing package r-bioc-qusage version 2.40.0-2 146s autopkgtest [02:26:44]: build not needed 150s autopkgtest [02:26:48]: test pkg-r-autopkgtest: preparing testbed 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 152s Starting pkgProblemResolver with broken count: 1 153s Starting 2 pkgProblemResolver with broken count: 1 153s Investigating (0) r-bioc-qusage:armhf < none -> 2.40.0-2 @un puN Ib > 153s Broken r-bioc-qusage:armhf Depends on r-api-bioc-3.20:armhf < none @un H > 153s Considering r-bioc-biocgenerics:armhf 0 as a solution to r-bioc-qusage:armhf 0 153s Re-Instated r-bioc-biocgenerics:armhf 153s Broken r-bioc-qusage:armhf Depends on r-bioc-limma:armhf < none @un H > (>= 3.14) 153s Broken r-bioc-qusage:armhf Depends on r-bioc-biobase:armhf < none | 2.66.0-2 @un uH > 153s Considering r-bioc-biobase:armhf 1 as a solution to r-bioc-qusage:armhf 0 153s Re-Instated r-bioc-biobase:armhf 153s Broken r-bioc-qusage:armhf Depends on r-cran-nlme:armhf < none | 3.1.168-1 @un uH > 153s Considering r-cran-nlme:armhf 1 as a solution to r-bioc-qusage:armhf 0 153s Re-Instated r-cran-lattice:armhf 153s Re-Instated r-cran-nlme:armhf 153s Broken r-bioc-qusage:armhf Depends on r-cran-emmeans:armhf < none | 1.10.7+dfsg-1 @un uH > 153s Considering r-cran-emmeans:armhf 1 as a solution to r-bioc-qusage:armhf 0 153s Re-Instated r-cran-estimability:armhf 153s Re-Instated r-cran-numderiv:armhf 153s Re-Instated r-cran-mvtnorm:armhf 153s Re-Instated r-cran-emmeans:armhf 153s Broken r-bioc-qusage:armhf Depends on r-cran-fftw:armhf < none | 1.0-9-1 @un uH > 153s Considering r-cran-fftw:armhf 1 as a solution to r-bioc-qusage:armhf 0 153s Re-Instated libfftw3-double3:armhf 153s Re-Instated r-cran-fftw:armhf 153s Done 153s Some packages could not be installed. This may mean that you have 153s requested an impossible situation or if you are using the unstable 153s distribution that some required packages have not yet been created 153s or been moved out of Incoming. 153s The following information may help to resolve the situation: 153s 153s The following packages have unmet dependencies: 153s r-bioc-qusage : Depends: r-bioc-limma (>= 3.14) but it is not installable 153s E: Unable to correct problems, you have held broken packages. 153s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Starting pkgProblemResolver with broken count: 1 158s Starting 2 pkgProblemResolver with broken count: 1 158s Investigating (0) r-bioc-qusage:armhf < none -> 2.40.0-2 @un puN Ib > 158s Broken r-bioc-qusage:armhf Depends on r-api-bioc-3.20:armhf < none @un H > 158s Considering r-bioc-biocgenerics:armhf 0 as a solution to r-bioc-qusage:armhf 0 158s Re-Instated r-bioc-biocgenerics:armhf 158s Broken r-bioc-qusage:armhf Depends on r-bioc-limma:armhf < none @un H > (>= 3.14) 158s Broken r-bioc-qusage:armhf Depends on r-bioc-biobase:armhf < none | 2.66.0-2 @un uH > 158s Considering r-bioc-biobase:armhf 1 as a solution to r-bioc-qusage:armhf 0 158s Re-Instated r-bioc-biobase:armhf 158s Broken r-bioc-qusage:armhf Depends on r-cran-nlme:armhf < none | 3.1.168-1 @un uH > 158s Considering r-cran-nlme:armhf 1 as a solution to r-bioc-qusage:armhf 0 158s Re-Instated r-cran-lattice:armhf 158s Re-Instated r-cran-nlme:armhf 158s Broken r-bioc-qusage:armhf Depends on r-cran-emmeans:armhf < none | 1.10.7+dfsg-1 @un uH > 158s Considering r-cran-emmeans:armhf 1 as a solution to r-bioc-qusage:armhf 0 158s Re-Instated r-cran-estimability:armhf 158s Re-Instated r-cran-numderiv:armhf 158s Re-Instated r-cran-mvtnorm:armhf 158s Re-Instated r-cran-emmeans:armhf 158s Broken r-bioc-qusage:armhf Depends on r-cran-fftw:armhf < none | 1.0-9-1 @un uH > 158s Considering r-cran-fftw:armhf 1 as a solution to r-bioc-qusage:armhf 0 158s Re-Instated libfftw3-double3:armhf 158s Re-Instated r-cran-fftw:armhf 158s Done 158s Some packages could not be installed. This may mean that you have 158s requested an impossible situation or if you are using the unstable 158s distribution that some required packages have not yet been created 158s or been moved out of Incoming. 158s The following information may help to resolve the situation: 158s 158s The following packages have unmet dependencies: 158s r-bioc-qusage : Depends: r-bioc-limma (>= 3.14) but it is not installable 158s E: Unable to correct problems, you have held broken packages. 158s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set 158s autopkgtest [02:26:56]: @@@@@@@@@@@@@@@@@@@@ summary 158s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set