0s autopkgtest [04:02:20]: starting date and time: 2025-05-03 04:02:20+0000 0s autopkgtest [04:02:20]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [04:02:20]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u48peae_/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:pytest --apt-upgrade python-pyfaidx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.3.5-2 -- lxd -r lxd-armhf-10.145.243.188 lxd-armhf-10.145.243.188:autopkgtest/ubuntu/questing/armhf 20s autopkgtest [04:02:40]: testbed dpkg architecture: armhf 23s autopkgtest [04:02:43]: testbed apt version: 3.0.0 27s autopkgtest [04:02:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [04:02:48]: testbed release detected to be: None 36s autopkgtest [04:02:56]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 38s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 38s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 38s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 39s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB] 39s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1920 kB] 39s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.3 kB] 39s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [204 kB] 39s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1378 kB] 39s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.5 kB] 39s Get:11 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 39s Get:12 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 40s Get:13 http://ftpmaster.internal/ubuntu questing/main Sources [1395 kB] 40s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 40s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [14.9 MB] 40s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 43s Fetched 43.3 MB in 5s (7926 kB/s) 45s Reading package lists... 50s autopkgtest [04:03:10]: upgrading testbed (apt dist-upgrade and autopurge) 52s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 53s Starting 2 pkgProblemResolver with broken count: 0 53s Done 54s Entering ResolveByKeep 55s 55s Calculating upgrade... 55s The following packages will be upgraded: 55s base-files distro-info-data dpkg dpkg-dev ed fwupd htop libdpkg-perl 55s libftdi1-2 libfwupd3 libnpth0t64 libnvme1t64 libsensors-config libsensors5 55s liburcu8t64 motd-news-config nano ubuntu-pro-client ubuntu-pro-client-l10n 55s usb.ids 56s 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s Need to get 5431 kB of archives. 56s After this operation, 3722 kB disk space will be freed. 56s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 56s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 56s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 56s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 56s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 56s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 56s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 56s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 56s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 56s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 56s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 56s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 56s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 56s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 56s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 56s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 56s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 56s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 56s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 56s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 57s Fetched 5431 kB in 1s (6946 kB/s) 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 57s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 57s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 57s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 57s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 57s Setting up base-files (13.7ubuntu1) ... 57s Installing new version of config file /etc/issue ... 57s Installing new version of config file /etc/issue.net ... 57s Installing new version of config file /etc/lsb-release ... 58s motd-news.service is a disabled or a static unit not running, not starting it. 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 58s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 58s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 58s Setting up dpkg (1.22.18ubuntu3) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 58s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 58s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 58s Setting up libnpth0t64:armhf (1.8-3) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 58s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 58s Unpacking distro-info-data (0.64) over (0.63) ... 58s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 58s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 58s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 59s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 59s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 59s Unpacking ed (1.21.1-1) over (1.21-1) ... 59s Preparing to unpack .../04-libsensors-config_1%3a3.6.2-2_all.deb ... 59s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 59s Preparing to unpack .../05-libsensors5_1%3a3.6.2-2_armhf.deb ... 59s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 59s Preparing to unpack .../06-liburcu8t64_0.15.2-2_armhf.deb ... 59s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 59s Preparing to unpack .../07-nano_8.4-1_armhf.deb ... 59s Unpacking nano (8.4-1) over (8.3-1) ... 59s Preparing to unpack .../08-usb.ids_2025.04.01-1_all.deb ... 59s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 59s Preparing to unpack .../09-dpkg-dev_1.22.18ubuntu3_all.deb ... 59s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 59s Preparing to unpack .../10-libdpkg-perl_1.22.18ubuntu3_all.deb ... 59s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 59s Preparing to unpack .../11-fwupd_2.0.8-3_armhf.deb ... 59s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 59s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 59s Preparing to unpack .../12-libfwupd3_2.0.8-3_armhf.deb ... 59s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 59s Preparing to unpack .../13-htop_3.4.1-4_armhf.deb ... 59s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 60s Preparing to unpack .../14-libftdi1-2_1.5-10_armhf.deb ... 60s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 60s Preparing to unpack .../15-libnvme1t64_1.13-2_armhf.deb ... 60s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 60s Setting up motd-news-config (13.7ubuntu1) ... 60s Setting up liburcu8t64:armhf (0.15.2-2) ... 60s Setting up distro-info-data (0.64) ... 60s Setting up htop (3.4.1-4) ... 60s Setting up libsensors-config (1:3.6.2-2) ... 60s Installing new version of config file /etc/sensors3.conf ... 60s Setting up libfwupd3:armhf (2.0.8-3) ... 60s Setting up libftdi1-2:armhf (1.5-10) ... 60s Setting up libnvme1t64 (1.13-2) ... 60s Setting up ed (1.21.1-1) ... 60s Setting up usb.ids (2025.04.01-1) ... 60s Setting up libsensors5:armhf (1:3.6.2-2) ... 60s Setting up libdpkg-perl (1.22.18ubuntu3) ... 60s Setting up nano (8.4-1) ... 60s Installing new version of config file /etc/nanorc ... 60s Setting up ubuntu-pro-client (35.1ubuntu0) ... 60s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 60s 60s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 60s 60s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 60s 61s Setting up fwupd (2.0.8-3) ... 62s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 62s fwupd.service is a disabled or a static unit not running, not starting it. 62s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 62s Setting up dpkg-dev (1.22.18ubuntu3) ... 62s Processing triggers for dbus (1.16.2-2ubuntu1) ... 62s Processing triggers for install-info (7.1.1-1) ... 62s Processing triggers for libc-bin (2.41-6ubuntu1) ... 62s Processing triggers for man-db (2.13.0-1) ... 64s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 64s Processing triggers for initramfs-tools (0.147ubuntu1) ... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 67s Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 67s Solving dependencies... 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s autopkgtest [04:03:30]: rebooting testbed after setup commands that affected boot 110s autopkgtest [04:04:10]: testbed running kernel: Linux 6.8.0-58-generic #60~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 28 14:48:37 UTC 2 135s autopkgtest [04:04:35]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyfaidx 148s Get:1 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (dsc) [2544 B] 148s Get:2 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (tar) [96.5 kB] 148s Get:3 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (diff) [7096 B] 148s gpgv: Signature made Wed Oct 16 19:20:44 2024 UTC 148s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 148s gpgv: issuer "emollier@debian.org" 148s gpgv: Can't check signature: No public key 148s dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.3-1.dsc: no acceptable signature found 148s autopkgtest [04:04:48]: testing package python-pyfaidx version 0.8.1.3-1 150s autopkgtest [04:04:50]: build not needed 153s autopkgtest [04:04:53]: test run-unit-test: preparing testbed 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Starting pkgProblemResolver with broken count: 0 155s Starting 2 pkgProblemResolver with broken count: 0 155s Done 156s The following NEW packages will be installed: 156s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 156s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 156s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhtscodecs2 156s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 156s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 156s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 156s python-pyfaidx-examples python3-all python3-biopython python3-cairo 156s python3-freetype python3-importlib-metadata python3-iniconfig python3-numpy 156s python3-numpy-dev python3-pil python3-pluggy python3-pyfaidx python3-pytest 156s python3-reportlab python3-rlpycairo sgml-base tabix w3c-sgml-lib x11-common 156s xfonts-encodings xfonts-utils xml-core 156s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 27.1 MB of archives. 156s After this operation, 79.0 MB of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf python3-numpy-dev armhf 1:2.2.3+ds-5 [141 kB] 157s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf libblas3 armhf 3.12.1-2 [132 kB] 157s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran5 armhf 15-20250404-0ubuntu1 [331 kB] 157s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 157s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf python3-numpy armhf 1:2.2.3+ds-5 [3725 kB] 157s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf sgml-base all 1.31 [11.4 kB] 157s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 157s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 157s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 157s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 157s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf x11-common all 1:7.7+23ubuntu4 [21.8 kB] 157s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 157s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 157s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 157s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig-config armhf 2.15.0-2.2ubuntu1 [37.9 kB] 157s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf libfontconfig1 armhf 2.15.0-2.2ubuntu1 [114 kB] 157s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 157s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 157s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 157s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 157s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf libcairo2 armhf 1.18.4-1 [483 kB] 157s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 157s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libgomp1 armhf 15-20250404-0ubuntu1 [128 kB] 157s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 157s Get:25 http://ftpmaster.internal/ubuntu questing/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 157s Get:26 http://ftpmaster.internal/ubuntu questing/universe armhf libhtscodecs2 armhf 1.6.1-2 [67.5 kB] 157s Get:27 http://ftpmaster.internal/ubuntu questing/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 157s Get:28 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 157s Get:29 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 157s Get:30 http://ftpmaster.internal/ubuntu questing/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 157s Get:31 http://ftpmaster.internal/ubuntu questing/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 157s Get:32 http://ftpmaster.internal/ubuntu questing/main armhf libraqm0 armhf 0.10.2-1 [12.4 kB] 157s Get:33 http://ftpmaster.internal/ubuntu questing/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 157s Get:34 http://ftpmaster.internal/ubuntu questing/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 158s Get:35 http://ftpmaster.internal/ubuntu questing/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 158s Get:36 http://ftpmaster.internal/ubuntu questing/main armhf libtiff6 armhf 4.7.0-3ubuntu1 [184 kB] 158s Get:37 http://ftpmaster.internal/ubuntu questing/main armhf libwebpdemux2 armhf 1.5.0-0.1 [11.5 kB] 158s Get:38 http://ftpmaster.internal/ubuntu questing/main armhf libwebpmux3 armhf 1.5.0-0.1 [22.4 kB] 158s Get:39 http://ftpmaster.internal/ubuntu questing/universe armhf python-pyfaidx-examples all 0.8.1.3-1 [38.6 kB] 158s Get:40 http://ftpmaster.internal/ubuntu questing/main armhf python3-all armhf 3.13.3-1 [880 B] 158s Get:41 http://ftpmaster.internal/ubuntu questing/main armhf libopenjp2-7 armhf 2.5.3-2 [172 kB] 158s Get:42 http://ftpmaster.internal/ubuntu questing/main armhf python3-pil armhf 11.1.0-5build1 [435 kB] 158s Get:43 http://ftpmaster.internal/ubuntu questing/main armhf python3-cairo armhf 1.27.0-2 [115 kB] 158s Get:44 http://ftpmaster.internal/ubuntu questing/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 158s Get:45 http://ftpmaster.internal/ubuntu questing/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 158s Get:46 http://ftpmaster.internal/ubuntu questing/universe armhf python3-reportlab all 4.3.1-1 [1137 kB] 158s Get:47 http://ftpmaster.internal/ubuntu questing/main armhf xml-core all 0.19 [20.3 kB] 158s Get:48 http://ftpmaster.internal/ubuntu questing/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 158s Get:49 http://ftpmaster.internal/ubuntu questing/universe armhf python3-biopython armhf 1.85+dfsg-2build1 [1692 kB] 158s Get:50 http://ftpmaster.internal/ubuntu questing/main armhf python3-importlib-metadata all 8.6.1-1 [20.7 kB] 158s Get:51 http://ftpmaster.internal/ubuntu questing/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 158s Get:52 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 158s Get:53 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 158s Get:54 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf python3-pytest all 8.3.5-2 [252 kB] 158s Get:55 http://ftpmaster.internal/ubuntu questing/universe armhf tabix armhf 1.21+ds-1 [433 kB] 158s Fetched 27.1 MB in 2s (17.7 MB/s) 158s Selecting previously unselected package python3-numpy-dev:armhf. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63951 files and directories currently installed.) 158s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_armhf.deb ... 158s Unpacking python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 158s Selecting previously unselected package libblas3:armhf. 158s Preparing to unpack .../01-libblas3_3.12.1-2_armhf.deb ... 158s Unpacking libblas3:armhf (3.12.1-2) ... 158s Selecting previously unselected package libgfortran5:armhf. 158s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_armhf.deb ... 158s Unpacking libgfortran5:armhf (15-20250404-0ubuntu1) ... 158s Selecting previously unselected package liblapack3:armhf. 158s Preparing to unpack .../03-liblapack3_3.12.1-2_armhf.deb ... 158s Unpacking liblapack3:armhf (3.12.1-2) ... 158s Selecting previously unselected package python3-numpy. 158s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_armhf.deb ... 158s Unpacking python3-numpy (1:2.2.3+ds-5) ... 159s Selecting previously unselected package sgml-base. 159s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 159s Unpacking sgml-base (1.31) ... 159s Selecting previously unselected package fonts-dejavu-mono. 159s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 159s Unpacking fonts-dejavu-mono (2.37-8) ... 159s Selecting previously unselected package fonts-dejavu-core. 159s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 159s Unpacking fonts-dejavu-core (2.37-8) ... 159s Selecting previously unselected package libfontenc1:armhf. 159s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 159s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 159s Selecting previously unselected package libfreetype6:armhf. 159s Preparing to unpack .../09-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 159s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 159s Selecting previously unselected package x11-common. 159s Preparing to unpack .../10-x11-common_1%3a7.7+23ubuntu4_all.deb ... 159s Unpacking x11-common (1:7.7+23ubuntu4) ... 159s Selecting previously unselected package xfonts-encodings. 159s Preparing to unpack .../11-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 159s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 159s Selecting previously unselected package xfonts-utils. 159s Preparing to unpack .../12-xfonts-utils_1%3a7.7+7_armhf.deb ... 159s Unpacking xfonts-utils (1:7.7+7) ... 159s Selecting previously unselected package fonts-urw-base35. 159s Preparing to unpack .../13-fonts-urw-base35_20200910-8_all.deb ... 159s Unpacking fonts-urw-base35 (20200910-8) ... 159s Selecting previously unselected package fontconfig-config. 159s Preparing to unpack .../14-fontconfig-config_2.15.0-2.2ubuntu1_armhf.deb ... 159s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 159s Selecting previously unselected package libfontconfig1:armhf. 159s Preparing to unpack .../15-libfontconfig1_2.15.0-2.2ubuntu1_armhf.deb ... 159s Unpacking libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 159s Selecting previously unselected package libpixman-1-0:armhf. 159s Preparing to unpack .../16-libpixman-1-0_0.44.0-3_armhf.deb ... 159s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 159s Selecting previously unselected package libxcb-render0:armhf. 159s Preparing to unpack .../17-libxcb-render0_1.17.0-2_armhf.deb ... 159s Unpacking libxcb-render0:armhf (1.17.0-2) ... 159s Selecting previously unselected package libxcb-shm0:armhf. 160s Preparing to unpack .../18-libxcb-shm0_1.17.0-2_armhf.deb ... 160s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 160s Selecting previously unselected package libxrender1:armhf. 160s Preparing to unpack .../19-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 160s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 160s Selecting previously unselected package libcairo2:armhf. 160s Preparing to unpack .../20-libcairo2_1.18.4-1_armhf.deb ... 160s Unpacking libcairo2:armhf (1.18.4-1) ... 160s Selecting previously unselected package libdeflate0:armhf. 160s Preparing to unpack .../21-libdeflate0_1.23-1_armhf.deb ... 160s Unpacking libdeflate0:armhf (1.23-1) ... 160s Selecting previously unselected package libgomp1:armhf. 160s Preparing to unpack .../22-libgomp1_15-20250404-0ubuntu1_armhf.deb ... 160s Unpacking libgomp1:armhf (15-20250404-0ubuntu1) ... 160s Selecting previously unselected package libgraphite2-3:armhf. 160s Preparing to unpack .../23-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 160s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 160s Selecting previously unselected package libharfbuzz0b:armhf. 160s Preparing to unpack .../24-libharfbuzz0b_10.2.0-1_armhf.deb ... 160s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 160s Selecting previously unselected package libhtscodecs2:armhf. 160s Preparing to unpack .../25-libhtscodecs2_1.6.1-2_armhf.deb ... 160s Unpacking libhtscodecs2:armhf (1.6.1-2) ... 160s Selecting previously unselected package libimagequant0:armhf. 160s Preparing to unpack .../26-libimagequant0_2.18.0-1build1_armhf.deb ... 160s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 160s Selecting previously unselected package libjpeg-turbo8:armhf. 160s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 160s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 160s Selecting previously unselected package libjpeg8:armhf. 160s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_armhf.deb ... 160s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 160s Selecting previously unselected package liblcms2-2:armhf. 160s Preparing to unpack .../29-liblcms2-2_2.16-2_armhf.deb ... 160s Unpacking liblcms2-2:armhf (2.16-2) ... 160s Selecting previously unselected package liblerc4:armhf. 160s Preparing to unpack .../30-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 160s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 160s Selecting previously unselected package libraqm0:armhf. 160s Preparing to unpack .../31-libraqm0_0.10.2-1_armhf.deb ... 160s Unpacking libraqm0:armhf (0.10.2-1) ... 160s Selecting previously unselected package libsharpyuv0:armhf. 160s Preparing to unpack .../32-libsharpyuv0_1.5.0-0.1_armhf.deb ... 160s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 160s Selecting previously unselected package libjbig0:armhf. 160s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 160s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 160s Selecting previously unselected package libwebp7:armhf. 160s Preparing to unpack .../34-libwebp7_1.5.0-0.1_armhf.deb ... 160s Unpacking libwebp7:armhf (1.5.0-0.1) ... 160s Selecting previously unselected package libtiff6:armhf. 160s Preparing to unpack .../35-libtiff6_4.7.0-3ubuntu1_armhf.deb ... 160s Unpacking libtiff6:armhf (4.7.0-3ubuntu1) ... 160s Selecting previously unselected package libwebpdemux2:armhf. 160s Preparing to unpack .../36-libwebpdemux2_1.5.0-0.1_armhf.deb ... 160s Unpacking libwebpdemux2:armhf (1.5.0-0.1) ... 160s Selecting previously unselected package libwebpmux3:armhf. 160s Preparing to unpack .../37-libwebpmux3_1.5.0-0.1_armhf.deb ... 160s Unpacking libwebpmux3:armhf (1.5.0-0.1) ... 160s Selecting previously unselected package python-pyfaidx-examples. 160s Preparing to unpack .../38-python-pyfaidx-examples_0.8.1.3-1_all.deb ... 160s Unpacking python-pyfaidx-examples (0.8.1.3-1) ... 160s Selecting previously unselected package python3-all. 160s Preparing to unpack .../39-python3-all_3.13.3-1_armhf.deb ... 160s Unpacking python3-all (3.13.3-1) ... 160s Selecting previously unselected package libopenjp2-7:armhf. 160s Preparing to unpack .../40-libopenjp2-7_2.5.3-2_armhf.deb ... 160s Unpacking libopenjp2-7:armhf (2.5.3-2) ... 160s Selecting previously unselected package python3-pil:armhf. 160s Preparing to unpack .../41-python3-pil_11.1.0-5build1_armhf.deb ... 160s Unpacking python3-pil:armhf (11.1.0-5build1) ... 160s Selecting previously unselected package python3-cairo. 160s Preparing to unpack .../42-python3-cairo_1.27.0-2_armhf.deb ... 160s Unpacking python3-cairo (1.27.0-2) ... 160s Selecting previously unselected package python3-freetype. 160s Preparing to unpack .../43-python3-freetype_2.5.1-1_all.deb ... 160s Unpacking python3-freetype (2.5.1-1) ... 160s Selecting previously unselected package python3-rlpycairo. 160s Preparing to unpack .../44-python3-rlpycairo_0.3.0-3_all.deb ... 160s Unpacking python3-rlpycairo (0.3.0-3) ... 160s Selecting previously unselected package python3-reportlab. 160s Preparing to unpack .../45-python3-reportlab_4.3.1-1_all.deb ... 160s Unpacking python3-reportlab (4.3.1-1) ... 160s Selecting previously unselected package xml-core. 161s Preparing to unpack .../46-xml-core_0.19_all.deb ... 161s Unpacking xml-core (0.19) ... 161s Selecting previously unselected package w3c-sgml-lib. 161s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... 161s Unpacking w3c-sgml-lib (1.3-3) ... 161s Selecting previously unselected package python3-biopython. 161s Preparing to unpack .../48-python3-biopython_1.85+dfsg-2build1_armhf.deb ... 161s Unpacking python3-biopython (1.85+dfsg-2build1) ... 161s Selecting previously unselected package python3-importlib-metadata. 161s Preparing to unpack .../49-python3-importlib-metadata_8.6.1-1_all.deb ... 161s Unpacking python3-importlib-metadata (8.6.1-1) ... 161s Selecting previously unselected package python3-iniconfig. 161s Preparing to unpack .../50-python3-iniconfig_1.1.1-2_all.deb ... 161s Unpacking python3-iniconfig (1.1.1-2) ... 161s Selecting previously unselected package python3-pluggy. 161s Preparing to unpack .../51-python3-pluggy_1.5.0-1_all.deb ... 161s Unpacking python3-pluggy (1.5.0-1) ... 161s Selecting previously unselected package python3-pyfaidx. 161s Preparing to unpack .../52-python3-pyfaidx_0.8.1.3-1_all.deb ... 161s Unpacking python3-pyfaidx (0.8.1.3-1) ... 161s Selecting previously unselected package python3-pytest. 161s Preparing to unpack .../53-python3-pytest_8.3.5-2_all.deb ... 161s Unpacking python3-pytest (8.3.5-2) ... 161s Selecting previously unselected package tabix. 161s Preparing to unpack .../54-tabix_1.21+ds-1_armhf.deb ... 161s Unpacking tabix (1.21+ds-1) ... 161s Setting up libhtscodecs2:armhf (1.6.1-2) ... 161s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 161s Setting up liblcms2-2:armhf (2.16-2) ... 161s Setting up python3-iniconfig (1.1.1-2) ... 161s Setting up libpixman-1-0:armhf (0.44.0-3) ... 161s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 161s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 161s Setting up python3-importlib-metadata (8.6.1-1) ... 161s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 161s Setting up python-pyfaidx-examples (0.8.1.3-1) ... 161s Setting up libxcb-render0:armhf (1.17.0-2) ... 161s Setting up x11-common (1:7.7+23ubuntu4) ... 162s Setting up libdeflate0:armhf (1.23-1) ... 162s Setting up python3-all (3.13.3-1) ... 162s Setting up libxcb-shm0:armhf (1.17.0-2) ... 162s Setting up libgomp1:armhf (15-20250404-0ubuntu1) ... 162s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 162s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 162s Setting up libblas3:armhf (3.12.1-2) ... 162s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 162s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 162s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 162s Setting up libimagequant0:armhf (2.18.0-1build1) ... 162s Setting up fonts-dejavu-mono (2.37-8) ... 162s Setting up python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 162s Setting up fonts-dejavu-core (2.37-8) ... 162s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 162s Setting up libgfortran5:armhf (15-20250404-0ubuntu1) ... 162s Setting up python3-pluggy (1.5.0-1) ... 162s Setting up libwebp7:armhf (1.5.0-0.1) ... 162s Setting up libopenjp2-7:armhf (2.5.3-2) ... 162s Setting up libharfbuzz0b:armhf (10.2.0-1) ... 162s Setting up sgml-base (1.31) ... 162s Setting up libwebpmux3:armhf (1.5.0-0.1) ... 162s Setting up tabix (1.21+ds-1) ... 162s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 162s Setting up python3-pyfaidx (0.8.1.3-1) ... 162s Setting up liblapack3:armhf (3.12.1-2) ... 162s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 162s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 162s Setting up python3-pytest (8.3.5-2) ... 163s Setting up libwebpdemux2:armhf (1.5.0-0.1) ... 163s Setting up python3-freetype (2.5.1-1) ... 163s Setting up xfonts-utils (1:7.7+7) ... 163s Setting up libraqm0:armhf (0.10.2-1) ... 163s Setting up python3-numpy (1:2.2.3+ds-5) ... 165s Setting up libtiff6:armhf (4.7.0-3ubuntu1) ... 165s Setting up xml-core (0.19) ... 165s Setting up libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 165s Setting up fonts-urw-base35 (20200910-8) ... 165s Setting up libcairo2:armhf (1.18.4-1) ... 165s Setting up python3-pil:armhf (11.1.0-5build1) ... 166s Setting up python3-cairo (1.27.0-2) ... 166s Setting up python3-rlpycairo (0.3.0-3) ... 166s Setting up python3-reportlab (4.3.1-1) ... 167s Processing triggers for libc-bin (2.41-6ubuntu1) ... 167s Processing triggers for man-db (2.13.0-1) ... 167s Processing triggers for sgml-base (1.31) ... 167s Setting up w3c-sgml-lib (1.3-3) ... 195s Setting up python3-biopython (1.85+dfsg-2build1) ... 205s autopkgtest [04:05:45]: test run-unit-test: [----------------------- 207s Testing with python3.13 in /tmp/autopkgtest.ihPgwa/build.4HZ/src: 208s ============================= test session starts ============================== 208s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 208s cachedir: .pytest_cache 208s rootdir: /tmp/autopkgtest.ihPgwa/build.4HZ/src 208s configfile: pyproject.toml 208s plugins: typeguard-4.4.2 208s collecting ... collected 136 items 208s 208s tests/test_FastaRecord.py::test_sequence_uppercase PASSED [ 0%] 208s tests/test_FastaRecord.py::test_long_names PASSED [ 1%] 208s tests/test_FastaRecord.py::test_issue_62 PASSED [ 2%] 208s tests/test_FastaRecord.py::test_unpadded_length PASSED [ 2%] 208s tests/test_FastaRecord.py::test_numpy_array PASSED [ 3%] 208s tests/test_FastaRecord_iter.py::test_fetch_whole_fasta PASSED [ 4%] 208s tests/test_FastaRecord_iter.py::test_line_len PASSED [ 5%] 208s tests/test_FastaRecord_iter.py::test_reverse_iter PASSED [ 5%] 208s tests/test_FastaVariant.py::test_fetch_variant SKIPPED (pysam not in...) [ 6%] 208s tests/test_FastaVariant.py::test_fetch_hom_variant SKIPPED (pysam no...) [ 7%] 208s tests/test_FastaVariant.py::test_fetch_het_variant SKIPPED (pysam no...) [ 8%] 208s tests/test_FastaVariant.py::test_fetch_chr_not_in_vcf SKIPPED (pysam...) [ 8%] 208s tests/test_FastaVariant.py::test_all_pos SKIPPED (pysam not installed.) [ 9%] 208s tests/test_FastaVariant.py::test_all_diff SKIPPED (pysam not installed.) [ 10%] 208s tests/test_Fasta_bgzip.py::test_build_issue_126 XFAIL [ 11%] 208s tests/test_Fasta_bgzip.py::test_integer_slice PASSED [ 11%] 208s tests/test_Fasta_bgzip.py::test_integer_index PASSED [ 12%] 208s tests/test_Fasta_bgzip.py::test_fetch_whole_fasta PASSED [ 13%] 208s tests/test_Fasta_bgzip.py::test_line_len PASSED [ 13%] 208s tests/test_Fasta_bgzip.py::test_mutable_bgzf PASSED [ 14%] 208s tests/test_Fasta_bgzip.py::test_long_names XFAIL [ 15%] 208s tests/test_Fasta_bgzip.py::test_fetch_whole_entry PASSED [ 16%] 208s tests/test_Fasta_bgzip.py::test_fetch_middle PASSED [ 16%] 208s tests/test_Fasta_bgzip.py::test_fetch_end PASSED [ 17%] 208s tests/test_Fasta_bgzip.py::test_fetch_border PASSED [ 18%] 208s tests/test_Fasta_bgzip.py::test_rev PASSED [ 19%] 208s tests/test_Fasta_bgzip.py::test_fetch_past_bounds PASSED [ 19%] 208s tests/test_Fasta_bgzip.py::test_fetch_negative PASSED [ 20%] 208s tests/test_Fasta_bgzip.py::test_fetch_reversed_coordinates PASSED [ 21%] 208s tests/test_Fasta_bgzip.py::test_fetch_keyerror PASSED [ 22%] 208s tests/test_Fasta_bgzip.py::test_blank_string PASSED [ 22%] 208s tests/test_Fasta_bgzip.py::test_slice_from_beginning PASSED [ 23%] 208s tests/test_Fasta_bgzip.py::test_slice_from_end PASSED [ 24%] 208s tests/test_Fasta_bgzip.py::test_issue_74_start PASSED [ 25%] 208s tests/test_Fasta_bgzip.py::test_issue_74_consistency PASSED [ 25%] 208s tests/test_Fasta_bgzip.py::test_issue_74_end_faidx PASSED [ 26%] 208s tests/test_Fasta_bgzip.py::test_issue_74_end_fasta PASSED [ 27%] 208s tests/test_Fasta_bgzip.py::test_issue_79_fix PASSED [ 27%] 208s tests/test_Fasta_bgzip.py::test_issue_79_fix_negate PASSED [ 28%] 208s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false PASSED [ 29%] 208s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false_negate PASSED [ 30%] 208s tests/test_Fasta_bgzip.py::test_fetch_border_padded PASSED [ 30%] 208s tests/test_Fasta_integer_index.py::test_integer_slice PASSED [ 31%] 208s tests/test_Fasta_integer_index.py::test_integer_index PASSED [ 32%] 208s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads PASSED [ 33%] 209s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads_and_writes PASSED [ 33%] 210s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_writes PASSED [ 34%] 210s tests/test_Path.py::test_Faidx PASSED [ 35%] 210s tests/test_Path.py::test_Fasta PASSED [ 36%] 210s tests/test_bio_seqio.py::test_fetch_whole_entry PASSED [ 36%] 210s tests/test_bio_seqio.py::test_slice_whole_entry PASSED [ 37%] 210s tests/test_bio_seqio.py::test_revcomp_whole_entry PASSED [ 38%] 210s tests/test_faidx.py::test_short_line_lengths PASSED [ 38%] 210s tests/test_faidx.py::test_fetch_whole_file PASSED [ 39%] 210s tests/test_faidx.py::test_split_entry PASSED [ 40%] 210s tests/test_faidx.py::test_fetch_error PASSED [ 41%] 210s tests/test_faidx.py::test_key_warning PASSED [ 41%] 210s tests/test_faidx.py::test_auto_strand PASSED [ 42%] 210s tests/test_faidx.py::test_regexp PASSED [ 43%] 210s tests/test_faidx.py::test_not_regexp PASSED [ 44%] 210s tests/test_faidx.py::test_not_regexp_multi PASSED [ 44%] 210s tests/test_feature_bounds_check.py::test_index_zero_length PASSED [ 45%] 210s tests/test_feature_bounds_check.py::test_fetch_zero_length PASSED [ 46%] 210s tests/test_feature_bounds_check.py::test_as_raw_zero_length_subsequence PASSED [ 47%] 210s tests/test_feature_bounds_check.py::test_zero_length_subsequence PASSED [ 47%] 210s tests/test_feature_bounds_check.py::test_fetch_whole_entry PASSED [ 48%] 210s tests/test_feature_bounds_check.py::test_fetch_middle PASSED [ 49%] 210s tests/test_feature_bounds_check.py::test_fetch_end PASSED [ 50%] 210s tests/test_feature_bounds_check.py::test_fetch_border PASSED [ 50%] 210s tests/test_feature_bounds_check.py::test_rev PASSED [ 51%] 210s tests/test_feature_bounds_check.py::test_fetch_past_bounds PASSED [ 52%] 210s tests/test_feature_bounds_check.py::test_fetch_negative PASSED [ 52%] 210s tests/test_feature_bounds_check.py::test_fetch_reversed_coordinates PASSED [ 53%] 210s tests/test_feature_bounds_check.py::test_fetch_keyerror PASSED [ 54%] 210s tests/test_feature_bounds_check.py::test_blank_string PASSED [ 55%] 210s tests/test_feature_bounds_check.py::test_slice_from_beginning PASSED [ 55%] 210s tests/test_feature_bounds_check.py::test_slice_from_end PASSED [ 56%] 210s tests/test_feature_bounds_check.py::test_issue_74_start PASSED [ 57%] 210s tests/test_feature_bounds_check.py::test_issue_74_consistency PASSED [ 58%] 210s tests/test_feature_bounds_check.py::test_issue_74_end_faidx PASSED [ 58%] 210s tests/test_feature_bounds_check.py::test_issue_74_end_fasta PASSED [ 59%] 210s tests/test_feature_bounds_check.py::test_issue_79_fix PASSED [ 60%] 210s tests/test_feature_bounds_check.py::test_issue_79_fix_negate PASSED [ 61%] 210s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false PASSED [ 61%] 210s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false_negate PASSED [ 62%] 210s tests/test_feature_default_seq.py::test_fetch_border_padded PASSED [ 63%] 210s tests/test_feature_indexing.py::test_version_issue_206 PASSED [ 63%] 210s tests/test_feature_indexing.py::test_build PASSED [ 64%] 210s tests/test_feature_indexing.py::test_build_issue_141 PASSED [ 65%] 210s tests/test_feature_indexing.py::test_build_issue_111 PASSED [ 66%] 210s tests/test_feature_indexing.py::test_order PASSED [ 66%] 216s tests/test_feature_indexing.py::test_valgrind_short_lines PASSED [ 67%] 221s tests/test_feature_indexing.py::test_valgrind_long_lines PASSED [ 68%] 226s tests/test_feature_indexing.py::test_valgrind_blank_lines PASSED [ 69%] 228s tests/test_feature_indexing.py::test_reindex_on_modification PASSED [ 69%] 228s tests/test_feature_indexing.py::test_build_issue_83 PASSED [ 70%] 228s tests/test_feature_indexing.py::test_build_issue_96_fail_build_faidx PASSED [ 71%] 228s tests/test_feature_indexing.py::test_build_issue_96_fail_read_malformed_index_duplicate_key PASSED [ 72%] 228s tests/test_feature_indexing.py::test_read_back_index PASSED [ 72%] 228s tests/test_feature_indexing.py::test_issue_134_no_build_index PASSED [ 73%] 228s tests/test_feature_indexing.py::test_issue_144_no_defline PASSED [ 74%] 228s tests/test_feature_key_function.py::test_keys PASSED [ 75%] 228s tests/test_feature_key_function.py::test_key_function_by_dictionary_get_key PASSED [ 75%] 228s tests/test_feature_key_function.py::test_key_function_by_fetch PASSED [ 76%] 228s tests/test_feature_key_function.py::test_duplicated_keys PASSED [ 77%] 228s tests/test_feature_key_function.py::test_duplicated_keys_shortest PASSED [ 77%] 228s tests/test_feature_key_function.py::test_duplicated_keys_longest PASSED [ 78%] 228s tests/test_feature_read_ahead_buffer.py::test_buffer_false PASSED [ 79%] 228s tests/test_feature_read_ahead_buffer.py::test_buffer_true PASSED [ 80%] 228s tests/test_feature_read_ahead_buffer.py::test_buffer_exceed PASSED [ 80%] 228s tests/test_feature_read_ahead_buffer.py::test_bounds_error PASSED [ 81%] 228s tests/test_feature_read_ahead_buffer.py::test_buffer_value PASSED [ 82%] 228s tests/test_feature_sequence_as_raw.py::test_as_raw_false PASSED [ 83%] 228s tests/test_feature_sequence_as_raw.py::test_as_raw_true PASSED [ 83%] 228s tests/test_feature_sequence_as_raw.py::test_as_raw_false_error PASSED [ 84%] 228s tests/test_feature_sequence_as_raw.py::test_as_raw_true_error PASSED [ 85%] 228s tests/test_feature_sequence_as_raw.py::test_as_raw_type_when_blen_lt_0 PASSED [ 86%] 228s tests/test_feature_spliced_seq.py::test_split_seq PASSED [ 86%] 228s tests/test_feature_spliced_seq.py::test_get_seq_rc PASSED [ 87%] 228s tests/test_feature_split_char.py::test_keys PASSED [ 88%] 228s tests/test_feature_split_char.py::test_key_function_by_dictionary_get_key PASSED [ 88%] 228s tests/test_feature_split_char.py::test_key_function_by_fetch PASSED [ 89%] 228s tests/test_feature_split_char.py::test_stop PASSED [ 90%] 228s tests/test_fsspec.py::test_fsspec_fetch_whole_file SKIPPED (uncondit...) [ 91%] 228s tests/test_fsspec.py::test_fsspec_default_index SKIPPED (uncondition...) [ 91%] 228s tests/test_fsspec.py::test_fsspec_local_index SKIPPED (unconditional...) [ 92%] 228s tests/test_fsspec.py::test_fsspec_remote_index SKIPPED (unconditiona...) [ 93%] 228s tests/test_sequence_class.py::test_negate PASSED [ 94%] 228s tests/test_sequence_class.py::test_negate_metadata PASSED [ 94%] 228s tests/test_sequence_class.py::test_seq_invalid PASSED [ 95%] 228s tests/test_sequence_class.py::test_integer_index PASSED [ 96%] 228s tests/test_sequence_class.py::test_slice_index PASSED [ 97%] 228s tests/test_sequence_class.py::test_comp_invalid PASSED [ 97%] 228s tests/test_sequence_class.py::test_check_coordinates PASSED [ 98%] 228s tests/test_sequence_class.py::test_comp_valid PASSED [ 99%] 228s tests/test_sequence_class.py::test_comp_empty PASSED [100%] 228s 228s ================= 124 passed, 10 skipped, 2 xfailed in 20.43s ================== 228s autopkgtest [04:06:08]: test run-unit-test: -----------------------] 233s autopkgtest [04:06:13]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 233s run-unit-test PASS 237s autopkgtest [04:06:17]: test autodep8-python3: preparing testbed 259s autopkgtest [04:06:39]: testbed dpkg architecture: armhf 261s autopkgtest [04:06:41]: testbed apt version: 3.0.0 265s autopkgtest [04:06:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 267s autopkgtest [04:06:47]: testbed release detected to be: questing 274s autopkgtest [04:06:54]: updating testbed package index (apt update) 276s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 276s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 276s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 277s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 277s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB] 277s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.3 kB] 277s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1920 kB] 277s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [204 kB] 277s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1378 kB] 278s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.5 kB] 278s Get:11 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 278s Get:12 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 279s Get:13 http://ftpmaster.internal/ubuntu questing/main Sources [1395 kB] 280s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 280s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [14.9 MB] 280s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 284s Fetched 43.3 MB in 8s (5779 kB/s) 285s Reading package lists... 290s autopkgtest [04:07:10]: upgrading testbed (apt dist-upgrade and autopurge) 292s Reading package lists... 292s Building dependency tree... 292s Reading state information... 293s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 293s Starting 2 pkgProblemResolver with broken count: 0 293s Done 294s Entering ResolveByKeep 294s 294s Calculating upgrade... 295s The following packages will be upgraded: 295s base-files distro-info-data dpkg dpkg-dev ed fwupd htop libdpkg-perl 295s libftdi1-2 libfwupd3 libnpth0t64 libnvme1t64 libsensors-config libsensors5 295s liburcu8t64 motd-news-config nano ubuntu-pro-client ubuntu-pro-client-l10n 295s usb.ids 295s 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 295s Need to get 5431 kB of archives. 295s After this operation, 3722 kB disk space will be freed. 295s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 295s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 295s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 295s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 295s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 295s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 295s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 295s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 295s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 295s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 295s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 295s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 295s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 295s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 295s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 295s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 295s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 295s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 296s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 296s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 296s Fetched 5431 kB in 1s (6742 kB/s) 296s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 296s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 296s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 296s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 296s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 296s Setting up base-files (13.7ubuntu1) ... 296s Installing new version of config file /etc/issue ... 296s Installing new version of config file /etc/issue.net ... 296s Installing new version of config file /etc/lsb-release ... 297s motd-news.service is a disabled or a static unit not running, not starting it. 297s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 297s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 297s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 297s Setting up dpkg (1.22.18ubuntu3) ... 298s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 298s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 298s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 298s Setting up libnpth0t64:armhf (1.8-3) ... 298s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 298s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 298s Unpacking distro-info-data (0.64) over (0.63) ... 298s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 298s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 298s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 298s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 298s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 298s Unpacking ed (1.21.1-1) over (1.21-1) ... 298s Preparing to unpack .../04-libsensors-config_1%3a3.6.2-2_all.deb ... 298s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 298s Preparing to unpack .../05-libsensors5_1%3a3.6.2-2_armhf.deb ... 298s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 298s Preparing to unpack .../06-liburcu8t64_0.15.2-2_armhf.deb ... 298s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 298s Preparing to unpack .../07-nano_8.4-1_armhf.deb ... 298s Unpacking nano (8.4-1) over (8.3-1) ... 298s Preparing to unpack .../08-usb.ids_2025.04.01-1_all.deb ... 298s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 298s Preparing to unpack .../09-dpkg-dev_1.22.18ubuntu3_all.deb ... 298s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 298s Preparing to unpack .../10-libdpkg-perl_1.22.18ubuntu3_all.deb ... 298s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 298s Preparing to unpack .../11-fwupd_2.0.8-3_armhf.deb ... 299s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 299s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 299s Preparing to unpack .../12-libfwupd3_2.0.8-3_armhf.deb ... 299s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 299s Preparing to unpack .../13-htop_3.4.1-4_armhf.deb ... 299s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 299s Preparing to unpack .../14-libftdi1-2_1.5-10_armhf.deb ... 299s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 299s Preparing to unpack .../15-libnvme1t64_1.13-2_armhf.deb ... 299s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 299s Setting up motd-news-config (13.7ubuntu1) ... 299s Setting up liburcu8t64:armhf (0.15.2-2) ... 299s Setting up distro-info-data (0.64) ... 299s Setting up htop (3.4.1-4) ... 299s Setting up libsensors-config (1:3.6.2-2) ... 299s Installing new version of config file /etc/sensors3.conf ... 299s Setting up libfwupd3:armhf (2.0.8-3) ... 299s Setting up libftdi1-2:armhf (1.5-10) ... 299s Setting up libnvme1t64 (1.13-2) ... 299s Setting up ed (1.21.1-1) ... 299s Setting up usb.ids (2025.04.01-1) ... 299s Setting up libsensors5:armhf (1:3.6.2-2) ... 299s Setting up libdpkg-perl (1.22.18ubuntu3) ... 299s Setting up nano (8.4-1) ... 299s Installing new version of config file /etc/nanorc ... 299s Setting up ubuntu-pro-client (35.1ubuntu0) ... 299s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 299s 299s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 299s 299s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 299s 301s Setting up fwupd (2.0.8-3) ... 301s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 301s fwupd.service is a disabled or a static unit not running, not starting it. 301s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 301s Setting up dpkg-dev (1.22.18ubuntu3) ... 301s Processing triggers for dbus (1.16.2-2ubuntu1) ... 301s Processing triggers for install-info (7.1.1-1) ... 301s Processing triggers for libc-bin (2.41-6ubuntu1) ... 302s Processing triggers for man-db (2.13.0-1) ... 303s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 303s Processing triggers for initramfs-tools (0.147ubuntu1) ... 305s Reading package lists... 306s Building dependency tree... 306s Reading state information... 306s Starting pkgProblemResolver with broken count: 0 306s Starting 2 pkgProblemResolver with broken count: 0 306s Done 306s Solving dependencies... 307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 309s autopkgtest [04:07:29]: rebooting testbed after setup commands that affected boot 373s Reading package lists... 374s Building dependency tree... 374s Reading state information... 375s Starting pkgProblemResolver with broken count: 0 375s Starting 2 pkgProblemResolver with broken count: 0 375s Done 376s The following NEW packages will be installed: 376s python3-all python3-importlib-metadata python3-pyfaidx 376s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 376s Need to get 51.3 kB of archives. 376s After this operation, 223 kB of additional disk space will be used. 376s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf python3-all armhf 3.13.3-1 [880 B] 376s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf python3-importlib-metadata all 8.6.1-1 [20.7 kB] 376s Get:3 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 376s Fetched 51.3 kB in 0s (138 kB/s) 376s Selecting previously unselected package python3-all. 376s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63951 files and directories currently installed.) 376s Preparing to unpack .../python3-all_3.13.3-1_armhf.deb ... 376s Unpacking python3-all (3.13.3-1) ... 377s Selecting previously unselected package python3-importlib-metadata. 377s Preparing to unpack .../python3-importlib-metadata_8.6.1-1_all.deb ... 377s Unpacking python3-importlib-metadata (8.6.1-1) ... 377s Selecting previously unselected package python3-pyfaidx. 377s Preparing to unpack .../python3-pyfaidx_0.8.1.3-1_all.deb ... 377s Unpacking python3-pyfaidx (0.8.1.3-1) ... 377s Setting up python3-importlib-metadata (8.6.1-1) ... 377s Setting up python3-all (3.13.3-1) ... 377s Setting up python3-pyfaidx (0.8.1.3-1) ... 377s Processing triggers for man-db (2.13.0-1) ... 391s autopkgtest [04:08:51]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyfaidx; print(pyfaidx)" ; done 391s autopkgtest [04:08:51]: test autodep8-python3: [----------------------- 393s Testing with python3.13: 394s 394s autopkgtest [04:08:54]: test autodep8-python3: -----------------------] 398s autopkgtest [04:08:58]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 398s autodep8-python3 PASS (superficial) 401s autopkgtest [04:09:01]: @@@@@@@@@@@@@@@@@@@@ summary 401s run-unit-test PASS 401s autodep8-python3 PASS (superficial)