0s autopkgtest [15:42:34]: starting date and time: 2025-07-03 15:42:34+0000 0s autopkgtest [15:42:34]: git checkout: 508d4a25 a-v-ssh wait_for_ssh: demote "ssh connection failed" to a debug message 0s autopkgtest [15:42:34]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2hi_80rf/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python-anndata --apt-upgrade python-anndata --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python-anndata/0.12.0~rc1-1' -- lxd -r lxd-armhf-10.145.243.149 lxd-armhf-10.145.243.149:autopkgtest/ubuntu/questing/armhf 23s autopkgtest [15:42:57]: testbed dpkg architecture: armhf 25s autopkgtest [15:42:59]: testbed apt version: 3.1.2 29s autopkgtest [15:43:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 31s autopkgtest [15:43:05]: testbed release detected to be: None 38s autopkgtest [15:43:12]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [249 kB] 41s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [249 kB] 41s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 41s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 41s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [357 kB] 42s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [27.4 kB] 42s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [16.8 kB] 42s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [38.8 kB] 42s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [239 kB] 42s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [3452 B] 42s Get:11 http://ftpmaster.internal/ubuntu questing/main Sources [1397 kB] 43s Get:12 http://ftpmaster.internal/ubuntu questing/universe Sources [21.3 MB] 51s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1356 kB] 51s Get:14 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [15.1 MB] 55s Fetched 40.5 MB in 15s (2679 kB/s) 56s Reading package lists... 62s autopkgtest [15:43:36]: upgrading testbed (apt dist-upgrade and autopurge) 63s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Calculating upgrade... 65s The following packages will be upgraded: 65s libdrm-common libdrm2 libpython3.13-minimal libpython3.13-stdlib python3.13 65s python3.13-gdbm python3.13-minimal 65s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s Need to get 5659 kB of archives. 65s After this operation, 3072 B of additional disk space will be used. 65s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf python3.13 armhf 3.13.5-2 [745 kB] 66s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf python3.13-minimal armhf 3.13.5-2 [2016 kB] 67s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf libpython3.13-stdlib armhf 3.13.5-2 [1950 kB] 67s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf libpython3.13-minimal armhf 3.13.5-2 [871 kB] 68s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf libdrm-common all 2.4.125-1 [9012 B] 68s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf libdrm2 armhf 2.4.125-1 [37.1 kB] 68s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf python3.13-gdbm armhf 3.13.5-2 [30.7 kB] 68s Fetched 5659 kB in 2s (2352 kB/s) 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59837 files and directories currently installed.) 68s Preparing to unpack .../0-python3.13_3.13.5-2_armhf.deb ... 68s Unpacking python3.13 (3.13.5-2) over (3.13.5-1) ... 68s Preparing to unpack .../1-python3.13-minimal_3.13.5-2_armhf.deb ... 68s Unpacking python3.13-minimal (3.13.5-2) over (3.13.5-1) ... 68s Preparing to unpack .../2-libpython3.13-stdlib_3.13.5-2_armhf.deb ... 68s Unpacking libpython3.13-stdlib:armhf (3.13.5-2) over (3.13.5-1) ... 69s Preparing to unpack .../3-libpython3.13-minimal_3.13.5-2_armhf.deb ... 69s Unpacking libpython3.13-minimal:armhf (3.13.5-2) over (3.13.5-1) ... 69s Preparing to unpack .../4-libdrm-common_2.4.125-1_all.deb ... 69s Unpacking libdrm-common (2.4.125-1) over (2.4.124-2) ... 69s Preparing to unpack .../5-libdrm2_2.4.125-1_armhf.deb ... 69s Unpacking libdrm2:armhf (2.4.125-1) over (2.4.124-2) ... 69s Preparing to unpack .../6-python3.13-gdbm_3.13.5-2_armhf.deb ... 69s Unpacking python3.13-gdbm (3.13.5-2) over (3.13.5-1) ... 69s Setting up libpython3.13-minimal:armhf (3.13.5-2) ... 69s Setting up python3.13-minimal (3.13.5-2) ... 70s Setting up libdrm-common (2.4.125-1) ... 70s Setting up libpython3.13-stdlib:armhf (3.13.5-2) ... 70s Setting up python3.13-gdbm (3.13.5-2) ... 70s Setting up python3.13 (3.13.5-2) ... 71s Setting up libdrm2:armhf (2.4.125-1) ... 71s Processing triggers for systemd (257.6-1ubuntu1) ... 71s Processing triggers for man-db (2.13.1-1) ... 72s Processing triggers for libc-bin (2.41-6ubuntu2) ... 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Solving dependencies... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 77s autopkgtest [15:43:51]: rebooting testbed after setup commands that affected boot 116s autopkgtest [15:44:30]: testbed running kernel: Linux 6.8.0-58-generic #60~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 28 14:48:37 UTC 2 139s autopkgtest [15:44:53]: @@@@@@@@@@@@@@@@@@@@ apt-source python-anndata 149s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/universe python-anndata 0.12.0~rc1-1 (dsc) [3137 B] 149s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/universe python-anndata 0.12.0~rc1-1 (tar) [575 kB] 149s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/universe python-anndata 0.12.0~rc1-1 (diff) [6956 B] 149s gpgv: Signature made Wed Jul 2 21:48:07 2025 UTC 149s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 149s gpgv: issuer "tchet@debian.org" 149s gpgv: Can't check signature: No public key 149s dpkg-source: warning: cannot verify inline signature for ./python-anndata_0.12.0~rc1-1.dsc: no acceptable signature found 149s autopkgtest [15:45:03]: testing package python-anndata version 0.12.0~rc1-1 151s autopkgtest [15:45:05]: build not needed 153s autopkgtest [15:45:07]: test run-unit-test: preparing testbed 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Solving dependencies... 155s Some packages could not be installed. This may mean that you have 155s requested an impossible situation or if you are using the unstable 155s distribution that some required packages have not yet been created 155s or been moved out of Incoming. 155s The following information may help to resolve the situation: 155s 155s The following packages have unmet dependencies: 156s satisfy:command-line : Depends: python3-all but it is not going to be installed 156s Depends: python3-awkward but it is not going to be installed 156s Depends: python3-boltons but it is not going to be installed 156s Depends: python3-dask but it is not going to be installed 156s Depends: python3-distributed but it is not going to be installed 156s Depends: python3-filelock but it is not going to be installed 156s Depends: python3-h5py but it is not going to be installed 156s Depends: python3-joblib but it is not going to be installed 156s Depends: python3-matplotlib but it is not going to be installed 156s Depends: python3-numba but it is not installable 156s Depends: python3-openpyxl but it is not going to be installed 156s Depends: python3-pytest but it is not going to be installed 156s Depends: python3-pytest-cov but it is not going to be installed 156s Depends: python3-pytest-mock but it is not going to be installed 156s Depends: python3-pytest-xdist but it is not going to be installed 156s Depends: python3-sklearn but it is not going to be installed 156s Depends: python3-xarray but it is not going to be installed 156s Depends: python3-xlrd but it is not going to be installed 156s Depends: python3-zarr but it is not going to be installed 156s Depends: quilt but it is not going to be installed 156s Depends: python3-anndata but it is not going to be installed 156s E: Unable to satisfy dependencies. Reached two conflicting decisions: 156s 1. util-linux:armhf is selected for install 156s 2. util-linux:armhf is available in versions 2.41-4ubuntu2, 2.41-4ubuntu3 156s but none of the choices are installable: 156s - util-linux:armhf=2.41-4ubuntu2 PreDepends liblastlog2-2 (= 2.41-4ubuntu2) 156s but none of the choices are installable: 156s - liblastlog2-2:armhf=2.41-4ubuntu2 -> | liblastlog2-2:armhf 156s but none of the choices are installable: 156s - liblastlog2-2:armhf is selected for removal 156s - util-linux:armhf=2.41-4ubuntu3 is not selected for install 156s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed 159s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Solving dependencies... 160s Some packages could not be installed. This may mean that you have 160s requested an impossible situation or if you are using the unstable 160s distribution that some required packages have not yet been created 160s or been moved out of Incoming. 160s The following information may help to resolve the situation: 160s 160s The following packages have unmet dependencies: 161s satisfy:command-line : Depends: python3-all but it is not going to be installed 161s Depends: python3-awkward but it is not going to be installed 161s Depends: python3-boltons but it is not going to be installed 161s Depends: python3-dask but it is not going to be installed 161s Depends: python3-distributed but it is not going to be installed 161s Depends: python3-filelock but it is not going to be installed 161s Depends: python3-h5py but it is not going to be installed 161s Depends: python3-joblib but it is not going to be installed 161s Depends: python3-matplotlib but it is not going to be installed 161s Depends: python3-numba but it is not installable 161s Depends: python3-openpyxl but it is not going to be installed 161s Depends: python3-pytest but it is not going to be installed 161s Depends: python3-pytest-cov but it is not going to be installed 161s Depends: python3-pytest-mock but it is not going to be installed 161s Depends: python3-pytest-xdist but it is not going to be installed 161s Depends: python3-sklearn but it is not going to be installed 161s Depends: python3-xarray but it is not going to be installed 161s Depends: python3-xlrd but it is not going to be installed 161s Depends: python3-zarr but it is not going to be installed 161s Depends: quilt but it is not going to be installed 161s Depends: python3-anndata but it is not going to be installed 161s E: Unable to satisfy dependencies. Reached two conflicting decisions: 161s 1. util-linux:armhf is selected for install 161s 2. util-linux:armhf is available in versions 2.41-4ubuntu2, 2.41-4ubuntu3 161s but none of the choices are installable: 161s - util-linux:armhf=2.41-4ubuntu2 PreDepends liblastlog2-2 (= 2.41-4ubuntu2) 161s but none of the choices are installable: 161s - liblastlog2-2:armhf=2.41-4ubuntu2 -> | liblastlog2-2:armhf 161s but none of the choices are installable: 161s - liblastlog2-2:armhf is selected for removal 161s - util-linux:armhf=2.41-4ubuntu3 PreDepends liblastlog2-2 (= 2.41-4ubuntu3) 161s but none of the choices are installable: 161s - liblastlog2-2:armhf=2.41-4ubuntu3 -> | liblastlog2-2:armhf 161s but none of the choices are installable: 161s - liblastlog2-2:armhf is selected for removal 161s run-unit-test FAIL badpkg 161s blame: python-anndata 161s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 161s autopkgtest [15:45:15]: @@@@@@@@@@@@@@@@@@@@ summary 161s run-unit-test FAIL badpkg 161s blame: python-anndata 161s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.