0s autopkgtest [07:25:17]: starting date and time: 2025-05-02 07:25:17+0000 0s autopkgtest [07:25:17]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [07:25:17]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.86u87kfd/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:pyopengl --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pyopengl/3.1.9+dfsg-1.1 -- lxd -r lxd-armhf-10.145.243.176 lxd-armhf-10.145.243.176:autopkgtest/ubuntu/questing/armhf 21s autopkgtest [07:25:38]: testbed dpkg architecture: armhf 23s autopkgtest [07:25:40]: testbed apt version: 3.0.0 27s autopkgtest [07:25:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [07:25:45]: testbed release detected to be: None 36s autopkgtest [07:25:53]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 38s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 38s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 38s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 38s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [184 kB] 38s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [57.4 kB] 38s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2202 kB] 39s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [206 kB] 39s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1383 kB] 39s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [15.1 kB] 39s Get:11 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 42s Get:12 http://ftpmaster.internal/ubuntu questing/main Sources [1385 kB] 42s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 42s Get:14 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [15.0 MB] 46s Fetched 43.3 MB in 8s (5562 kB/s) 47s Reading package lists... 52s autopkgtest [07:26:09]: upgrading testbed (apt dist-upgrade and autopurge) 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 55s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 55s Starting 2 pkgProblemResolver with broken count: 0 55s Done 56s Entering ResolveByKeep 56s 56s Calculating upgrade... 57s The following packages will be upgraded: 57s base-files distro-info-data dpkg dpkg-dev libdpkg-perl motd-news-config 57s ubuntu-pro-client ubuntu-pro-client-l10n 57s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 2989 kB of archives. 57s After this operation, 1024 B of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 57s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 57s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 58s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 58s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 58s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 58s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 58s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 58s Fetched 2989 kB in 1s (3904 kB/s) 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 59s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 59s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 59s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 59s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 59s Setting up base-files (13.7ubuntu1) ... 59s Installing new version of config file /etc/issue ... 59s Installing new version of config file /etc/issue.net ... 59s Installing new version of config file /etc/lsb-release ... 60s motd-news.service is a disabled or a static unit not running, not starting it. 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 60s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 60s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 60s Setting up dpkg (1.22.18ubuntu3) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 60s Preparing to unpack .../distro-info-data_0.64_all.deb ... 60s Unpacking distro-info-data (0.64) over (0.63) ... 60s Preparing to unpack .../ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 60s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 60s Preparing to unpack .../ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 61s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 61s Preparing to unpack .../dpkg-dev_1.22.18ubuntu3_all.deb ... 61s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 61s Preparing to unpack .../libdpkg-perl_1.22.18ubuntu3_all.deb ... 61s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 61s Setting up motd-news-config (13.7ubuntu1) ... 61s Setting up distro-info-data (0.64) ... 61s Setting up libdpkg-perl (1.22.18ubuntu3) ... 61s Setting up ubuntu-pro-client (35.1ubuntu0) ... 61s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 61s 61s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 61s 61s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 61s 63s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 63s Setting up dpkg-dev (1.22.18ubuntu3) ... 63s Processing triggers for install-info (7.1.1-1) ... 63s Processing triggers for man-db (2.13.0-1) ... 65s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 65s Processing triggers for initramfs-tools (0.147ubuntu1) ... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 68s Starting pkgProblemResolver with broken count: 0 68s Starting 2 pkgProblemResolver with broken count: 0 68s Done 68s Solving dependencies... 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s autopkgtest [07:26:28]: rebooting testbed after setup commands that affected boot 111s autopkgtest [07:27:08]: testbed running kernel: Linux 6.8.0-58-generic #60~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 28 14:48:37 UTC 2 137s autopkgtest [07:27:34]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 156s Get:1 http://ftpmaster.internal/ubuntu questing/universe pymol 3.1.0+dfsg-1 (dsc) [2307 B] 156s Get:2 http://ftpmaster.internal/ubuntu questing/universe pymol 3.1.0+dfsg-1 (tar) [22.0 MB] 156s Get:3 http://ftpmaster.internal/ubuntu questing/universe pymol 3.1.0+dfsg-1 (diff) [57.9 kB] 156s gpgv: Signature made Mon Mar 17 08:37:43 2025 UTC 156s gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 156s gpgv: Can't check signature: No public key 156s dpkg-source: warning: cannot verify inline signature for ./pymol_3.1.0+dfsg-1.dsc: no acceptable signature found 158s autopkgtest [07:27:55]: testing package pymol version 3.1.0+dfsg-1 160s autopkgtest [07:27:57]: build not needed 165s autopkgtest [07:28:02]: test command1: preparing testbed 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 168s Starting pkgProblemResolver with broken count: 0 168s Starting 2 pkgProblemResolver with broken count: 0 168s Done 169s The following NEW packages will be installed: 169s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 169s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 169s libdouble-conversion3 libegl-mesa0 libegl1 libfontconfig1 libfreetype6 169s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgles2 libglew2.2 libglu1-mesa 169s libglut3.12 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 169s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libice6 libinput-bin libinput10 169s libjpeg-turbo8 libjpeg8 liblapack3 libllvm19 libmd4c0 libmtdev1t64 169s libnetcdf22 libopengl0 libpcre2-16-0 libpython3.13 libqt5core5t64 169s libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 169s libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 169s libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common 169s libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri3-0 169s libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 169s libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 169s libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 169s libxcb-xkb1 libxi6 libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 169s mesa-libgallium pymol pymol-data python3-legacy-cgi python3-numpy 169s python3-numpy-dev python3-opengl python3-pymol python3-pyqt5 169s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 169s 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. 169s Need to get 71.4 MB of archives. 169s After this operation, 261 MB of additional disk space will be used. 169s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf python3-numpy-dev armhf 1:2.2.3+ds-5 [141 kB] 169s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf libblas3 armhf 3.12.1-2 [132 kB] 169s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran5 armhf 15-20250404-0ubuntu1 [331 kB] 169s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 169s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf python3-numpy armhf 1:2.2.3+ds-5 [3725 kB] 170s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 170s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 170s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 170s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig-config armhf 2.15.0-2.2ubuntu1 [37.9 kB] 170s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libfontconfig1 armhf 2.15.0-2.2ubuntu1 [114 kB] 170s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig armhf 2.15.0-2.2ubuntu1 [190 kB] 170s Get:12 http://ftpmaster.internal/ubuntu questing/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 170s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf libavahi-common-data armhf 0.8-16ubuntu2 [31.0 kB] 170s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf libavahi-common3 armhf 0.8-16ubuntu2 [20.2 kB] 170s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libavahi-client3 armhf 0.8-16ubuntu2 [24.5 kB] 170s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf libcups2t64 armhf 2.4.12-0ubuntu1 [240 kB] 170s Get:17 http://ftpmaster.internal/ubuntu questing/universe armhf libdouble-conversion3 armhf 3.3.1-1 [39.1 kB] 170s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libwayland-server0 armhf 1.23.1-3 [30.3 kB] 170s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libllvm19 armhf 1:19.1.7-3ubuntu1 [27.8 MB] 170s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 170s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 170s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 170s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 170s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 170s Get:25 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 170s Get:26 http://ftpmaster.internal/ubuntu questing/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B] 170s Get:27 http://ftpmaster.internal/ubuntu questing/main armhf mesa-libgallium armhf 25.0.3-1ubuntu2 [8260 kB] 171s Get:28 http://ftpmaster.internal/ubuntu questing/main armhf libgbm1 armhf 25.0.3-1ubuntu2 [29.0 kB] 171s Get:29 http://ftpmaster.internal/ubuntu questing/main armhf libwayland-client0 armhf 1.23.1-3 [23.3 kB] 171s Get:30 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 171s Get:31 http://ftpmaster.internal/ubuntu questing/main armhf libegl-mesa0 armhf 25.0.3-1ubuntu2 [101 kB] 171s Get:32 http://ftpmaster.internal/ubuntu questing/main armhf libvulkan1 armhf 1.4.304.0-1 [127 kB] 171s Get:33 http://ftpmaster.internal/ubuntu questing/main armhf libgl1-mesa-dri armhf 25.0.3-1ubuntu2 [32.0 kB] 171s Get:34 http://ftpmaster.internal/ubuntu questing/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 171s Get:35 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 171s Get:36 http://ftpmaster.internal/ubuntu questing/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 171s Get:37 http://ftpmaster.internal/ubuntu questing/main armhf libglx-mesa0 armhf 25.0.3-1ubuntu2 [120 kB] 171s Get:38 http://ftpmaster.internal/ubuntu questing/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 171s Get:39 http://ftpmaster.internal/ubuntu questing/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 171s Get:40 http://ftpmaster.internal/ubuntu questing/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 171s Get:41 http://ftpmaster.internal/ubuntu questing/main armhf libxi6 armhf 2:1.8.2-1 [26.5 kB] 171s Get:42 http://ftpmaster.internal/ubuntu questing/universe armhf libglut3.12 armhf 3.4.0-4 [84.1 kB] 171s Get:43 http://ftpmaster.internal/ubuntu questing/main armhf libgomp1 armhf 15-20250404-0ubuntu1 [128 kB] 171s Get:44 http://ftpmaster.internal/ubuntu questing/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 171s Get:45 http://ftpmaster.internal/ubuntu questing/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 171s Get:46 http://ftpmaster.internal/ubuntu questing/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 171s Get:47 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 171s Get:48 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB] 171s Get:49 http://ftpmaster.internal/ubuntu questing/main armhf x11-common all 1:7.7+23ubuntu4 [21.8 kB] 171s Get:50 http://ftpmaster.internal/ubuntu questing/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 171s Get:51 http://ftpmaster.internal/ubuntu questing/main armhf libwacom-common all 2.14.0-1 [103 kB] 171s Get:52 http://ftpmaster.internal/ubuntu questing/main armhf libwacom9 armhf 2.14.0-1 [23.6 kB] 171s Get:53 http://ftpmaster.internal/ubuntu questing/main armhf libinput-bin armhf 1.27.1-1 [25.9 kB] 171s Get:54 http://ftpmaster.internal/ubuntu questing/main armhf libmtdev1t64 armhf 1.1.7-1 [13.0 kB] 171s Get:55 http://ftpmaster.internal/ubuntu questing/main armhf libinput10 armhf 1.27.1-1 [124 kB] 171s Get:56 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 171s Get:57 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 171s Get:58 http://ftpmaster.internal/ubuntu questing/universe armhf libmd4c0 armhf 0.5.2-2 [38.2 kB] 171s Get:59 http://ftpmaster.internal/ubuntu questing/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB] 171s Get:60 http://ftpmaster.internal/ubuntu questing/main armhf libpcre2-16-0 armhf 10.45-1 [207 kB] 171s Get:61 http://ftpmaster.internal/ubuntu questing/main armhf libpython3.13 armhf 3.13.3-1 [2082 kB] 171s Get:62 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5core5t64 armhf 5.15.15+dfsg-4ubuntu1 [1768 kB] 171s Get:63 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5dbus5t64 armhf 5.15.15+dfsg-4ubuntu1 [198 kB] 171s Get:64 http://ftpmaster.internal/ubuntu questing/main armhf libegl1 armhf 1.7.0-1build1 [29.8 kB] 171s Get:65 http://ftpmaster.internal/ubuntu questing/main armhf libgles2 armhf 1.7.0-1build1 [18.0 kB] 171s Get:66 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5network5t64 armhf 5.15.15+dfsg-4ubuntu1 [653 kB] 171s Get:67 http://ftpmaster.internal/ubuntu questing/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB] 171s Get:68 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-icccm4 armhf 0.4.2-1 [9840 B] 171s Get:69 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-util1 armhf 0.4.1-1 [9468 B] 171s Get:70 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-image0 armhf 0.4.0-2build1 [9680 B] 171s Get:71 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-keysyms1 armhf 0.4.1-1 [8076 B] 171s Get:72 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 171s Get:73 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render-util0 armhf 0.3.10-1 [9444 B] 171s Get:74 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shape0 armhf 1.17.0-2 [6030 B] 171s Get:75 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-xinerama0 armhf 1.17.0-2 [5212 B] 171s Get:76 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-xinput0 armhf 1.17.0-2 [29.5 kB] 171s Get:77 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-xkb1 armhf 1.17.0-2 [28.8 kB] 171s Get:78 http://ftpmaster.internal/ubuntu questing/main armhf libxkbcommon-x11-0 armhf 1.7.0-2 [13.6 kB] 171s Get:79 http://ftpmaster.internal/ubuntu questing/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 171s Get:80 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5gui5t64 armhf 5.15.15+dfsg-4ubuntu1 [2968 kB] 171s Get:81 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5widgets5t64 armhf 5.15.15+dfsg-4ubuntu1 [2261 kB] 171s Get:82 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5xml5t64 armhf 5.15.15+dfsg-4ubuntu1 [108 kB] 171s Get:83 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5designer5 armhf 5.15.15-6build1 [2726 kB] 171s Get:84 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5sql5t64 armhf 5.15.15+dfsg-4ubuntu1 [108 kB] 171s Get:85 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5help5 armhf 5.15.15-6build1 [144 kB] 171s Get:86 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5opengl5t64 armhf 5.15.15+dfsg-4ubuntu1 [126 kB] 171s Get:87 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5printsupport5t64 armhf 5.15.15+dfsg-4ubuntu1 [192 kB] 171s Get:88 http://ftpmaster.internal/ubuntu questing/universe armhf libqt5test5t64 armhf 5.15.15+dfsg-4ubuntu1 [136 kB] 171s Get:89 http://ftpmaster.internal/ubuntu questing/main armhf python3-legacy-cgi all 2.6.2-1 [16.6 kB] 171s Get:90 http://ftpmaster.internal/ubuntu questing/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 171s Get:91 http://ftpmaster.internal/ubuntu questing/main armhf libglu1-mesa armhf 9.0.2-1.1build1 [153 kB] 171s Get:92 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf python3-opengl all 3.1.9+dfsg-1.1 [631 kB] 171s Get:93 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pyqt5.sip armhf 12.17.0-1build1 [55.1 kB] 171s Get:94 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pyqt5 armhf 5.15.11+dfsg-2 [2199 kB] 171s Get:95 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pyqt5.qtopengl armhf 5.15.11+dfsg-2 [47.4 kB] 171s Get:96 http://ftpmaster.internal/ubuntu questing/universe armhf pymol-data all 3.1.0+dfsg-1 [1394 kB] 171s Get:97 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pymol armhf 3.1.0+dfsg-1 [3758 kB] 172s Get:98 http://ftpmaster.internal/ubuntu questing/universe armhf pymol all 3.1.0+dfsg-1 [126 kB] 172s Fetched 71.4 MB in 3s (23.8 MB/s) 172s Selecting previously unselected package python3-numpy-dev:armhf. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 172s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_armhf.deb ... 172s Unpacking python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 172s Selecting previously unselected package libblas3:armhf. 172s Preparing to unpack .../01-libblas3_3.12.1-2_armhf.deb ... 172s Unpacking libblas3:armhf (3.12.1-2) ... 172s Selecting previously unselected package libgfortran5:armhf. 172s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_armhf.deb ... 172s Unpacking libgfortran5:armhf (15-20250404-0ubuntu1) ... 172s Selecting previously unselected package liblapack3:armhf. 172s Preparing to unpack .../03-liblapack3_3.12.1-2_armhf.deb ... 172s Unpacking liblapack3:armhf (3.12.1-2) ... 172s Selecting previously unselected package python3-numpy. 172s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_armhf.deb ... 173s Unpacking python3-numpy (1:2.2.3+ds-5) ... 173s Selecting previously unselected package libfreetype6:armhf. 173s Preparing to unpack .../05-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 173s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 173s Selecting previously unselected package fonts-dejavu-mono. 173s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 173s Unpacking fonts-dejavu-mono (2.37-8) ... 173s Selecting previously unselected package fonts-dejavu-core. 173s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 173s Unpacking fonts-dejavu-core (2.37-8) ... 173s Selecting previously unselected package fontconfig-config. 173s Preparing to unpack .../08-fontconfig-config_2.15.0-2.2ubuntu1_armhf.deb ... 173s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 173s Selecting previously unselected package libfontconfig1:armhf. 173s Preparing to unpack .../09-libfontconfig1_2.15.0-2.2ubuntu1_armhf.deb ... 173s Unpacking libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 173s Selecting previously unselected package fontconfig. 173s Preparing to unpack .../10-fontconfig_2.15.0-2.2ubuntu1_armhf.deb ... 173s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 173s Selecting previously unselected package libaec0:armhf. 173s Preparing to unpack .../11-libaec0_1.1.3-1_armhf.deb ... 173s Unpacking libaec0:armhf (1.1.3-1) ... 173s Selecting previously unselected package libavahi-common-data:armhf. 173s Preparing to unpack .../12-libavahi-common-data_0.8-16ubuntu2_armhf.deb ... 173s Unpacking libavahi-common-data:armhf (0.8-16ubuntu2) ... 173s Selecting previously unselected package libavahi-common3:armhf. 173s Preparing to unpack .../13-libavahi-common3_0.8-16ubuntu2_armhf.deb ... 173s Unpacking libavahi-common3:armhf (0.8-16ubuntu2) ... 173s Selecting previously unselected package libavahi-client3:armhf. 173s Preparing to unpack .../14-libavahi-client3_0.8-16ubuntu2_armhf.deb ... 173s Unpacking libavahi-client3:armhf (0.8-16ubuntu2) ... 173s Selecting previously unselected package libcups2t64:armhf. 173s Preparing to unpack .../15-libcups2t64_2.4.12-0ubuntu1_armhf.deb ... 173s Unpacking libcups2t64:armhf (2.4.12-0ubuntu1) ... 173s Selecting previously unselected package libdouble-conversion3:armhf. 173s Preparing to unpack .../16-libdouble-conversion3_3.3.1-1_armhf.deb ... 173s Unpacking libdouble-conversion3:armhf (3.3.1-1) ... 173s Selecting previously unselected package libwayland-server0:armhf. 173s Preparing to unpack .../17-libwayland-server0_1.23.1-3_armhf.deb ... 173s Unpacking libwayland-server0:armhf (1.23.1-3) ... 174s Selecting previously unselected package libllvm19:armhf. 174s Preparing to unpack .../18-libllvm19_1%3a19.1.7-3ubuntu1_armhf.deb ... 174s Unpacking libllvm19:armhf (1:19.1.7-3ubuntu1) ... 174s Selecting previously unselected package libx11-xcb1:armhf. 174s Preparing to unpack .../19-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 174s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 174s Selecting previously unselected package libxcb-dri3-0:armhf. 174s Preparing to unpack .../20-libxcb-dri3-0_1.17.0-2_armhf.deb ... 174s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 174s Selecting previously unselected package libxcb-present0:armhf. 175s Preparing to unpack .../21-libxcb-present0_1.17.0-2_armhf.deb ... 175s Unpacking libxcb-present0:armhf (1.17.0-2) ... 175s Selecting previously unselected package libxcb-randr0:armhf. 175s Preparing to unpack .../22-libxcb-randr0_1.17.0-2_armhf.deb ... 175s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 175s Selecting previously unselected package libxcb-sync1:armhf. 175s Preparing to unpack .../23-libxcb-sync1_1.17.0-2_armhf.deb ... 175s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 175s Selecting previously unselected package libxcb-xfixes0:armhf. 175s Preparing to unpack .../24-libxcb-xfixes0_1.17.0-2_armhf.deb ... 175s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 175s Selecting previously unselected package libxshmfence1:armhf. 175s Preparing to unpack .../25-libxshmfence1_1.3-1build5_armhf.deb ... 175s Unpacking libxshmfence1:armhf (1.3-1build5) ... 175s Selecting previously unselected package mesa-libgallium:armhf. 175s Preparing to unpack .../26-mesa-libgallium_25.0.3-1ubuntu2_armhf.deb ... 175s Unpacking mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 175s Selecting previously unselected package libgbm1:armhf. 175s Preparing to unpack .../27-libgbm1_25.0.3-1ubuntu2_armhf.deb ... 175s Unpacking libgbm1:armhf (25.0.3-1ubuntu2) ... 175s Selecting previously unselected package libwayland-client0:armhf. 175s Preparing to unpack .../28-libwayland-client0_1.23.1-3_armhf.deb ... 175s Unpacking libwayland-client0:armhf (1.23.1-3) ... 175s Selecting previously unselected package libxcb-shm0:armhf. 175s Preparing to unpack .../29-libxcb-shm0_1.17.0-2_armhf.deb ... 175s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 175s Selecting previously unselected package libegl-mesa0:armhf. 175s Preparing to unpack .../30-libegl-mesa0_25.0.3-1ubuntu2_armhf.deb ... 175s Unpacking libegl-mesa0:armhf (25.0.3-1ubuntu2) ... 175s Selecting previously unselected package libvulkan1:armhf. 175s Preparing to unpack .../31-libvulkan1_1.4.304.0-1_armhf.deb ... 175s Unpacking libvulkan1:armhf (1.4.304.0-1) ... 175s Selecting previously unselected package libgl1-mesa-dri:armhf. 175s Preparing to unpack .../32-libgl1-mesa-dri_25.0.3-1ubuntu2_armhf.deb ... 175s Unpacking libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 175s Selecting previously unselected package libglvnd0:armhf. 175s Preparing to unpack .../33-libglvnd0_1.7.0-1build1_armhf.deb ... 175s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 175s Selecting previously unselected package libxcb-glx0:armhf. 175s Preparing to unpack .../34-libxcb-glx0_1.17.0-2_armhf.deb ... 175s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 175s Selecting previously unselected package libxxf86vm1:armhf. 175s Preparing to unpack .../35-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 175s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 175s Selecting previously unselected package libglx-mesa0:armhf. 175s Preparing to unpack .../36-libglx-mesa0_25.0.3-1ubuntu2_armhf.deb ... 175s Unpacking libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 175s Selecting previously unselected package libglx0:armhf. 175s Preparing to unpack .../37-libglx0_1.7.0-1build1_armhf.deb ... 175s Unpacking libglx0:armhf (1.7.0-1build1) ... 175s Selecting previously unselected package libgl1:armhf. 175s Preparing to unpack .../38-libgl1_1.7.0-1build1_armhf.deb ... 175s Unpacking libgl1:armhf (1.7.0-1build1) ... 175s Selecting previously unselected package libglew2.2:armhf. 175s Preparing to unpack .../39-libglew2.2_2.2.0-4build1_armhf.deb ... 175s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 175s Selecting previously unselected package libxi6:armhf. 175s Preparing to unpack .../40-libxi6_2%3a1.8.2-1_armhf.deb ... 175s Unpacking libxi6:armhf (2:1.8.2-1) ... 175s Selecting previously unselected package libglut3.12:armhf. 175s Preparing to unpack .../41-libglut3.12_3.4.0-4_armhf.deb ... 175s Unpacking libglut3.12:armhf (3.4.0-4) ... 176s Selecting previously unselected package libgomp1:armhf. 176s Preparing to unpack .../42-libgomp1_15-20250404-0ubuntu1_armhf.deb ... 176s Unpacking libgomp1:armhf (15-20250404-0ubuntu1) ... 176s Selecting previously unselected package libgraphite2-3:armhf. 176s Preparing to unpack .../43-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 176s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 176s Selecting previously unselected package libharfbuzz0b:armhf. 176s Preparing to unpack .../44-libharfbuzz0b_10.2.0-1_armhf.deb ... 176s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 176s Selecting previously unselected package libsz2:armhf. 176s Preparing to unpack .../45-libsz2_1.1.3-1_armhf.deb ... 176s Unpacking libsz2:armhf (1.1.3-1) ... 176s Selecting previously unselected package libhdf5-310:armhf. 176s Preparing to unpack .../46-libhdf5-310_1.14.5+repack-3_armhf.deb ... 176s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 176s Selecting previously unselected package libhdf5-hl-310:armhf. 176s Preparing to unpack .../47-libhdf5-hl-310_1.14.5+repack-3_armhf.deb ... 176s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3) ... 176s Selecting previously unselected package x11-common. 176s Preparing to unpack .../48-x11-common_1%3a7.7+23ubuntu4_all.deb ... 176s Unpacking x11-common (1:7.7+23ubuntu4) ... 176s Selecting previously unselected package libice6:armhf. 176s Preparing to unpack .../49-libice6_2%3a1.1.1-1_armhf.deb ... 176s Unpacking libice6:armhf (2:1.1.1-1) ... 176s Selecting previously unselected package libwacom-common. 176s Preparing to unpack .../50-libwacom-common_2.14.0-1_all.deb ... 176s Unpacking libwacom-common (2.14.0-1) ... 176s Selecting previously unselected package libwacom9:armhf. 176s Preparing to unpack .../51-libwacom9_2.14.0-1_armhf.deb ... 176s Unpacking libwacom9:armhf (2.14.0-1) ... 176s Selecting previously unselected package libinput-bin. 176s Preparing to unpack .../52-libinput-bin_1.27.1-1_armhf.deb ... 176s Unpacking libinput-bin (1.27.1-1) ... 176s Selecting previously unselected package libmtdev1t64:armhf. 176s Preparing to unpack .../53-libmtdev1t64_1.1.7-1_armhf.deb ... 176s Unpacking libmtdev1t64:armhf (1.1.7-1) ... 176s Selecting previously unselected package libinput10:armhf. 176s Preparing to unpack .../54-libinput10_1.27.1-1_armhf.deb ... 176s Unpacking libinput10:armhf (1.27.1-1) ... 176s Selecting previously unselected package libjpeg-turbo8:armhf. 176s Preparing to unpack .../55-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 176s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 176s Selecting previously unselected package libjpeg8:armhf. 176s Preparing to unpack .../56-libjpeg8_8c-2ubuntu11_armhf.deb ... 176s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 176s Selecting previously unselected package libmd4c0:armhf. 176s Preparing to unpack .../57-libmd4c0_0.5.2-2_armhf.deb ... 176s Unpacking libmd4c0:armhf (0.5.2-2) ... 176s Selecting previously unselected package libnetcdf22:armhf. 176s Preparing to unpack .../58-libnetcdf22_1%3a4.9.3-1_armhf.deb ... 176s Unpacking libnetcdf22:armhf (1:4.9.3-1) ... 176s Selecting previously unselected package libpcre2-16-0:armhf. 176s Preparing to unpack .../59-libpcre2-16-0_10.45-1_armhf.deb ... 176s Unpacking libpcre2-16-0:armhf (10.45-1) ... 176s Selecting previously unselected package libpython3.13:armhf. 176s Preparing to unpack .../60-libpython3.13_3.13.3-1_armhf.deb ... 176s Unpacking libpython3.13:armhf (3.13.3-1) ... 176s Selecting previously unselected package libqt5core5t64:armhf. 176s Preparing to unpack .../61-libqt5core5t64_5.15.15+dfsg-4ubuntu1_armhf.deb ... 176s Unpacking libqt5core5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 177s Selecting previously unselected package libqt5dbus5t64:armhf. 177s Preparing to unpack .../62-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_armhf.deb ... 177s Unpacking libqt5dbus5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 177s Selecting previously unselected package libegl1:armhf. 177s Preparing to unpack .../63-libegl1_1.7.0-1build1_armhf.deb ... 177s Unpacking libegl1:armhf (1.7.0-1build1) ... 177s Selecting previously unselected package libgles2:armhf. 177s Preparing to unpack .../64-libgles2_1.7.0-1build1_armhf.deb ... 177s Unpacking libgles2:armhf (1.7.0-1build1) ... 177s Selecting previously unselected package libqt5network5t64:armhf. 177s Preparing to unpack .../65-libqt5network5t64_5.15.15+dfsg-4ubuntu1_armhf.deb ... 177s Unpacking libqt5network5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 177s Selecting previously unselected package libsm6:armhf. 177s Preparing to unpack .../66-libsm6_2%3a1.2.4-1_armhf.deb ... 177s Unpacking libsm6:armhf (2:1.2.4-1) ... 177s Selecting previously unselected package libxcb-icccm4:armhf. 177s Preparing to unpack .../67-libxcb-icccm4_0.4.2-1_armhf.deb ... 177s Unpacking libxcb-icccm4:armhf (0.4.2-1) ... 177s Selecting previously unselected package libxcb-util1:armhf. 177s Preparing to unpack .../68-libxcb-util1_0.4.1-1_armhf.deb ... 177s Unpacking libxcb-util1:armhf (0.4.1-1) ... 177s Selecting previously unselected package libxcb-image0:armhf. 177s Preparing to unpack .../69-libxcb-image0_0.4.0-2build1_armhf.deb ... 177s Unpacking libxcb-image0:armhf (0.4.0-2build1) ... 177s Selecting previously unselected package libxcb-keysyms1:armhf. 177s Preparing to unpack .../70-libxcb-keysyms1_0.4.1-1_armhf.deb ... 177s Unpacking libxcb-keysyms1:armhf (0.4.1-1) ... 177s Selecting previously unselected package libxcb-render0:armhf. 177s Preparing to unpack .../71-libxcb-render0_1.17.0-2_armhf.deb ... 177s Unpacking libxcb-render0:armhf (1.17.0-2) ... 177s Selecting previously unselected package libxcb-render-util0:armhf. 177s Preparing to unpack .../72-libxcb-render-util0_0.3.10-1_armhf.deb ... 177s Unpacking libxcb-render-util0:armhf (0.3.10-1) ... 177s Selecting previously unselected package libxcb-shape0:armhf. 177s Preparing to unpack .../73-libxcb-shape0_1.17.0-2_armhf.deb ... 177s Unpacking libxcb-shape0:armhf (1.17.0-2) ... 177s Selecting previously unselected package libxcb-xinerama0:armhf. 177s Preparing to unpack .../74-libxcb-xinerama0_1.17.0-2_armhf.deb ... 177s Unpacking libxcb-xinerama0:armhf (1.17.0-2) ... 177s Selecting previously unselected package libxcb-xinput0:armhf. 177s Preparing to unpack .../75-libxcb-xinput0_1.17.0-2_armhf.deb ... 177s Unpacking libxcb-xinput0:armhf (1.17.0-2) ... 177s Selecting previously unselected package libxcb-xkb1:armhf. 177s Preparing to unpack .../76-libxcb-xkb1_1.17.0-2_armhf.deb ... 177s Unpacking libxcb-xkb1:armhf (1.17.0-2) ... 177s Selecting previously unselected package libxkbcommon-x11-0:armhf. 177s Preparing to unpack .../77-libxkbcommon-x11-0_1.7.0-2_armhf.deb ... 177s Unpacking libxkbcommon-x11-0:armhf (1.7.0-2) ... 177s Selecting previously unselected package libxrender1:armhf. 177s Preparing to unpack .../78-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 177s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 177s Selecting previously unselected package libqt5gui5t64:armhf. 177s Preparing to unpack .../79-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_armhf.deb ... 177s Unpacking libqt5gui5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 177s Selecting previously unselected package libqt5widgets5t64:armhf. 177s Preparing to unpack .../80-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_armhf.deb ... 177s Unpacking libqt5widgets5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 177s Selecting previously unselected package libqt5xml5t64:armhf. 177s Preparing to unpack .../81-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_armhf.deb ... 177s Unpacking libqt5xml5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 177s Selecting previously unselected package libqt5designer5:armhf. 177s Preparing to unpack .../82-libqt5designer5_5.15.15-6build1_armhf.deb ... 177s Unpacking libqt5designer5:armhf (5.15.15-6build1) ... 178s Selecting previously unselected package libqt5sql5t64:armhf. 178s Preparing to unpack .../83-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_armhf.deb ... 178s Unpacking libqt5sql5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 178s Selecting previously unselected package libqt5help5:armhf. 178s Preparing to unpack .../84-libqt5help5_5.15.15-6build1_armhf.deb ... 178s Unpacking libqt5help5:armhf (5.15.15-6build1) ... 178s Selecting previously unselected package libqt5opengl5t64:armhf. 178s Preparing to unpack .../85-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_armhf.deb ... 178s Unpacking libqt5opengl5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 178s Selecting previously unselected package libqt5printsupport5t64:armhf. 178s Preparing to unpack .../86-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_armhf.deb ... 178s Unpacking libqt5printsupport5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 178s Selecting previously unselected package libqt5test5t64:armhf. 178s Preparing to unpack .../87-libqt5test5t64_5.15.15+dfsg-4ubuntu1_armhf.deb ... 178s Unpacking libqt5test5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 178s Selecting previously unselected package python3-legacy-cgi. 178s Preparing to unpack .../88-python3-legacy-cgi_2.6.2-1_all.deb ... 178s Unpacking python3-legacy-cgi (2.6.2-1) ... 178s Selecting previously unselected package libopengl0:armhf. 178s Preparing to unpack .../89-libopengl0_1.7.0-1build1_armhf.deb ... 178s Unpacking libopengl0:armhf (1.7.0-1build1) ... 178s Selecting previously unselected package libglu1-mesa:armhf. 178s Preparing to unpack .../90-libglu1-mesa_9.0.2-1.1build1_armhf.deb ... 178s Unpacking libglu1-mesa:armhf (9.0.2-1.1build1) ... 178s Selecting previously unselected package python3-opengl. 178s Preparing to unpack .../91-python3-opengl_3.1.9+dfsg-1.1_all.deb ... 178s Unpacking python3-opengl (3.1.9+dfsg-1.1) ... 178s Selecting previously unselected package python3-pyqt5.sip. 178s Preparing to unpack .../92-python3-pyqt5.sip_12.17.0-1build1_armhf.deb ... 178s Unpacking python3-pyqt5.sip (12.17.0-1build1) ... 179s Selecting previously unselected package python3-pyqt5. 179s Preparing to unpack .../93-python3-pyqt5_5.15.11+dfsg-2_armhf.deb ... 179s Unpacking python3-pyqt5 (5.15.11+dfsg-2) ... 179s Selecting previously unselected package python3-pyqt5.qtopengl. 179s Preparing to unpack .../94-python3-pyqt5.qtopengl_5.15.11+dfsg-2_armhf.deb ... 179s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 179s Selecting previously unselected package pymol-data. 179s Preparing to unpack .../95-pymol-data_3.1.0+dfsg-1_all.deb ... 179s Unpacking pymol-data (3.1.0+dfsg-1) ... 179s Selecting previously unselected package python3-pymol. 179s Preparing to unpack .../96-python3-pymol_3.1.0+dfsg-1_armhf.deb ... 179s Unpacking python3-pymol (3.1.0+dfsg-1) ... 179s Selecting previously unselected package pymol. 179s Preparing to unpack .../97-pymol_3.1.0+dfsg-1_all.deb ... 179s Unpacking pymol (3.1.0+dfsg-1) ... 179s Setting up libpython3.13:armhf (3.13.3-1) ... 179s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 179s Setting up libxcb-dri3-0:armhf (1.17.0-2) ... 179s Setting up libllvm19:armhf (1:19.1.7-3ubuntu1) ... 179s Setting up libwayland-server0:armhf (1.23.1-3) ... 179s Setting up libx11-xcb1:armhf (2:1.8.10-2) ... 179s Setting up libdouble-conversion3:armhf (3.3.1-1) ... 179s Setting up libxcb-xfixes0:armhf (1.17.0-2) ... 179s Setting up libxi6:armhf (2:1.8.2-1) ... 179s Setting up libxcb-xinput0:armhf (1.17.0-2) ... 179s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 179s Setting up libxcb-render0:armhf (1.17.0-2) ... 179s Setting up libglvnd0:armhf (1.7.0-1build1) ... 179s Setting up libxcb-glx0:armhf (1.17.0-2) ... 179s Setting up libxcb-keysyms1:armhf (0.4.1-1) ... 179s Setting up libxcb-shape0:armhf (1.17.0-2) ... 179s Setting up x11-common (1:7.7+23ubuntu4) ... 179s Setting up libxcb-render-util0:armhf (0.3.10-1) ... 179s Setting up libxcb-shm0:armhf (1.17.0-2) ... 179s Setting up libxcb-icccm4:armhf (0.4.2-1) ... 179s Setting up libgomp1:armhf (15-20250404-0ubuntu1) ... 179s Setting up libpcre2-16-0:armhf (10.45-1) ... 179s Setting up libaec0:armhf (1.1.3-1) ... 179s Setting up libopengl0:armhf (1.7.0-1build1) ... 179s Setting up libxcb-util1:armhf (0.4.1-1) ... 179s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ... 179s Setting up libxcb-xkb1:armhf (1.17.0-2) ... 179s Setting up libxcb-image0:armhf (0.4.0-2build1) ... 179s Setting up libxcb-present0:armhf (1.17.0-2) ... 179s Setting up libqt5core5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 179s Setting up libblas3:armhf (3.12.1-2) ... 179s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 179s Setting up libxcb-xinerama0:armhf (1.17.0-2) ... 179s Setting up libgles2:armhf (1.7.0-1build1) ... 179s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 179s Setting up libxcb-sync1:armhf (1.17.0-2) ... 179s Setting up libavahi-common-data:armhf (0.8-16ubuntu2) ... 179s Setting up pymol-data (3.1.0+dfsg-1) ... 179s Setting up libxkbcommon-x11-0:armhf (1.7.0-2) ... 179s Setting up fonts-dejavu-mono (2.37-8) ... 179s Setting up python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 179s Setting up fonts-dejavu-core (2.37-8) ... 179s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 179s Setting up libgfortran5:armhf (15-20250404-0ubuntu1) ... 179s Setting up libvulkan1:armhf (1.4.304.0-1) ... 179s Setting up python3-legacy-cgi (2.6.2-1) ... 180s Setting up python3-pyqt5.sip (12.17.0-1build1) ... 180s Setting up libmtdev1t64:armhf (1.1.7-1) ... 180s Setting up libxshmfence1:armhf (1.3-1build5) ... 180s Setting up libxcb-randr0:armhf (1.17.0-2) ... 180s Setting up libqt5sql5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 180s Setting up libmd4c0:armhf (0.5.2-2) ... 180s Setting up libharfbuzz0b:armhf (10.2.0-1) ... 180s Setting up libglu1-mesa:armhf (9.0.2-1.1build1) ... 180s Setting up libsz2:armhf (1.1.3-1) ... 180s Setting up libwacom-common (2.14.0-1) ... 180s Setting up libwayland-client0:armhf (1.23.1-3) ... 180s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 180s Setting up libice6:armhf (2:1.1.1-1) ... 180s Setting up mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 180s Setting up liblapack3:armhf (3.12.1-2) ... 180s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 180s Setting up libqt5dbus5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 180s Setting up libgbm1:armhf (25.0.3-1ubuntu2) ... 180s Setting up libwacom9:armhf (2.14.0-1) ... 180s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 180s Setting up libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 180s Setting up libqt5network5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 180s Setting up libavahi-common3:armhf (0.8-16ubuntu2) ... 180s Setting up libqt5xml5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 180s Setting up libqt5test5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 180s Setting up libinput-bin (1.27.1-1) ... 180s Setting up libegl-mesa0:armhf (25.0.3-1ubuntu2) ... 180s Setting up python3-numpy (1:2.2.3+ds-5) ... 182s Setting up libhdf5-310:armhf (1.14.5+repack-3) ... 182s Setting up libegl1:armhf (1.7.0-1build1) ... 182s Setting up libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 182s Setting up libsm6:armhf (2:1.2.4-1) ... 182s Setting up libavahi-client3:armhf (0.8-16ubuntu2) ... 182s Setting up libinput10:armhf (1.27.1-1) ... 182s Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ... 182s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 184s Regenerating fonts cache... done. 184s Setting up libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 184s Setting up libglx0:armhf (1.7.0-1build1) ... 184s Setting up libnetcdf22:armhf (1:4.9.3-1) ... 184s Setting up libqt5gui5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 184s Setting up libgl1:armhf (1.7.0-1build1) ... 184s Setting up libglut3.12:armhf (3.4.0-4) ... 184s Setting up libglew2.2:armhf (2.2.0-4build1) ... 184s Setting up libcups2t64:armhf (2.4.12-0ubuntu1) ... 184s Setting up libqt5widgets5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 184s Setting up python3-opengl (3.1.9+dfsg-1.1) ... 185s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ ' 185s |\ |\ 186s Setting up libqt5help5:armhf (5.15.15-6build1) ... 186s Setting up libqt5opengl5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 186s Setting up libqt5printsupport5t64:armhf (5.15.15+dfsg-4ubuntu1) ... 186s Setting up libqt5designer5:armhf (5.15.15-6build1) ... 186s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 186s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 186s Setting up python3-pymol (3.1.0+dfsg-1) ... 187s Setting up pymol (3.1.0+dfsg-1) ... 187s Processing triggers for libc-bin (2.41-6ubuntu1) ... 187s Processing triggers for man-db (2.13.0-1) ... 188s Processing triggers for udev (257.4-1ubuntu3) ... 196s autopkgtest [07:28:33]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 196s autopkgtest [07:28:33]: test command1: [----------------------- 198s Search pymol scripts in /tmp/autopkgtest.fjz35v/build.CcR/src/examples... 198s Processing new directory /tmp/autopkgtest.fjz35v/build.CcR/src/examples 198s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/chempy/generate_amber.py'... 198s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/chempy/generate_mmff.py'... 199s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/area_diff.pml'... 200s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/build_peptide.py'... 200s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/contact.pml 200s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/dali.py 200s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/density.pml 200s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/groel_es.pml 200s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/multiclip_ray.pml 200s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/packing.pml 200s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/packsurf.pml 200s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/ref_frame.pml 200s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/ribosome.pml 200s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/scenes2movie.pml 200s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/seq_match_sele.pml'... 204s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/ss_xfer.pml 204s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/symsph.py'... 204s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/brick01.py'... 204s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo01.py'... 204s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo02.py'... 208s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo03.py'... 211s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo04.py'... 211s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo05.py'... 212s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo06.py'... 214s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo07.py'... 214s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo08.py'... 214s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo_3Dtext01.py'... 215s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo_axes.py'... 215s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo_label_hack.py'... 218s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo_plane.py'... 218s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/chempy_model01.py'... 219s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/chempy_model02.py'... 219s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/chempy_model03.py'... 222s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/click_ordered_list.py'... 222s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/count_molecules.py'... 223s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/extend_demo01.py'... 223s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/gl01.py'... 223s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/gl02.py'... 224s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/gl03.py'... 227s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/importing.py 227s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/link_demo.py'... 228s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/membrane.py'... 228s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/mutate01.pml'... 228s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/mutate02.py'... 230s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/my_ext_gui.py'... 230s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/particle01.py'... 231s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/particle02.py'... 231s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/pick_wiz.py'... 232s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/povray01.py 232s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/scenes_to_movie01.pml'... 232s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/sd_annotate.pml 232s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/sele_wiz.py'... 232s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/start_pymol.py 232s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/syncmol.py'... 232s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/tkwindow.py 232s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/webgui01.py'... 232s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/webgui02.py'... 233s /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 233s mo = re.search("molid\=([A-Z0-9]+)",self.path) 233s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/xmlrpc01.py 233s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/xmlrpc02.py'... 233s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/launching/launch_demo.py'... 233s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/launching/launch_viewer1.py'... 233s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/launching/launch_viewer2.py'... 234s Processing new directory /tmp/autopkgtest.fjz35v/build.CcR/src/examples/chempy 234s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/chempy/generate_amber.py'... 234s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/chempy/generate_mmff.py'... 234s Processing new directory /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook 234s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/area_diff.pml'... 235s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/build_peptide.py'... 235s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/contact.pml 235s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/dali.py 235s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/density.pml 235s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/groel_es.pml 235s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/multiclip_ray.pml 235s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/packing.pml 235s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/packsurf.pml 235s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/ref_frame.pml 235s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/ribosome.pml 235s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/scenes2movie.pml 235s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/seq_match_sele.pml'... 237s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/ss_xfer.pml 237s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/cookbook/symsph.py'... 237s Processing new directory /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel 237s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/brick01.py'... 238s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo01.py'... 238s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo02.py'... 241s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo03.py'... 244s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo04.py'... 245s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo05.py'... 245s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo06.py'... 246s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo07.py'... 246s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo08.py'... 247s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo_3Dtext01.py'... 247s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo_axes.py'... 247s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo_label_hack.py'... 250s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/cgo_plane.py'... 251s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/chempy_model01.py'... 251s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/chempy_model02.py'... 251s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/chempy_model03.py'... 254s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/click_ordered_list.py'... 255s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/count_molecules.py'... 255s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/extend_demo01.py'... 255s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/gl01.py'... 256s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/gl02.py'... 256s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/gl03.py'... 260s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/importing.py 260s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/link_demo.py'... 260s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/membrane.py'... 260s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/mutate01.pml'... 261s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/mutate02.py'... 263s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/my_ext_gui.py'... 263s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/particle01.py'... 263s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/particle02.py'... 264s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/pick_wiz.py'... 264s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/povray01.py 264s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/scenes_to_movie01.pml'... 264s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/sd_annotate.pml 264s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/sele_wiz.py'... 264s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/start_pymol.py 264s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/syncmol.py'... 265s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/tkwindow.py 265s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/webgui01.py'... 265s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/webgui02.py'... 265s /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 265s mo = re.search("molid\=([A-Z0-9]+)",self.path) 265s Skip /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/xmlrpc01.py 265s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/devel/xmlrpc02.py'... 265s Processing new directory /tmp/autopkgtest.fjz35v/build.CcR/src/examples/launching 265s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/launching/launch_demo.py'... 266s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/launching/launch_viewer1.py'... 266s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/examples/launching/launch_viewer2.py'... 266s autopkgtest [07:29:43]: test command1: -----------------------] 270s command1 PASS (superficial) 270s autopkgtest [07:29:47]: test command1: - - - - - - - - - - results - - - - - - - - - - 275s autopkgtest [07:29:52]: test command2: preparing testbed 277s Reading package lists... 277s Building dependency tree... 277s Reading state information... 278s Starting pkgProblemResolver with broken count: 0 278s Starting 2 pkgProblemResolver with broken count: 0 278s Done 279s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 286s autopkgtest [07:30:03]: test command2: sh debian/tests/call-pymol-scripts data/demo 286s autopkgtest [07:30:03]: test command2: [----------------------- 288s Search pymol scripts in /tmp/autopkgtest.fjz35v/build.CcR/src/data/demo... 288s Processing new directory /tmp/autopkgtest.fjz35v/build.CcR/src/data/demo 288s Run 'pymol -c /tmp/autopkgtest.fjz35v/build.CcR/src/data/demo/cgo03.py'... 292s autopkgtest [07:30:09]: test command2: -----------------------] 296s autopkgtest [07:30:13]: test command2: - - - - - - - - - - results - - - - - - - - - - 296s command2 PASS (superficial) 300s autopkgtest [07:30:17]: test command3: preparing testbed 302s Reading package lists... 302s Building dependency tree... 302s Reading state information... 303s Starting pkgProblemResolver with broken count: 0 303s Starting 2 pkgProblemResolver with broken count: 0 303s Done 304s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 311s autopkgtest [07:30:28]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 311s autopkgtest [07:30:28]: test command3: [----------------------- 313s Search pymol scripts in /usr/share/pymol/examples... 313s Processing new directory /usr/share/pymol/examples 313s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 314s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 314s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 314s Skip /usr/share/pymol/examples/cookbook/contact.pml 314s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 314s Skip /usr/share/pymol/examples/cookbook/packing.pml 314s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 314s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 314s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 314s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 314s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 314s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 314s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 314s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 318s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 321s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 321s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 322s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 324s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 325s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 325s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 325s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 325s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 329s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 329s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 329s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 329s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 333s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 333s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 333s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 333s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 334s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 334s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 338s Skip /usr/share/pymol/examples/devel/importing.py 338s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 338s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 339s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 339s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 341s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 341s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 342s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 342s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 342s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 342s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 342s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 343s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 343s Skip /usr/share/pymol/examples/devel/tkwindow.py 343s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 343s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 343s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 343s mo = re.search("molid\=([A-Z0-9]+)",self.path) 343s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 343s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 344s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 344s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 344s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 344s Processing new directory /usr/share/pymol/examples/chempy 344s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 345s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 345s Processing new directory /usr/share/pymol/examples/cookbook 345s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 345s Skip /usr/share/pymol/examples/cookbook/contact.pml 345s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 345s Skip /usr/share/pymol/examples/cookbook/packing.pml 345s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 345s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 345s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 345s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 345s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 345s Processing new directory /usr/share/pymol/examples/devel 345s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 345s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 345s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 349s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 352s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 352s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 352s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 353s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 354s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 354s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 354s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 354s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 358s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 358s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 358s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 358s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 362s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 362s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 362s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 363s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 363s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 363s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 368s Skip /usr/share/pymol/examples/devel/importing.py 368s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 368s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 368s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 368s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 370s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 370s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 371s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 372s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 372s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 372s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 372s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 372s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 372s Skip /usr/share/pymol/examples/devel/tkwindow.py 372s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 372s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 372s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 372s mo = re.search("molid\=([A-Z0-9]+)",self.path) 372s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 372s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 373s Processing new directory /usr/share/pymol/examples/launching 373s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 373s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 373s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 374s autopkgtest [07:31:31]: test command3: -----------------------] 378s command3 PASS (superficial) 378s autopkgtest [07:31:35]: test command3: - - - - - - - - - - results - - - - - - - - - - 382s autopkgtest [07:31:39]: test command4: preparing testbed 383s Reading package lists... 384s Building dependency tree... 384s Reading state information... 384s Starting pkgProblemResolver with broken count: 0 384s Starting 2 pkgProblemResolver with broken count: 0 384s Done 385s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 393s autopkgtest [07:31:50]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 393s autopkgtest [07:31:50]: test command4: [----------------------- 395s Search pymol scripts in /usr/share/pymol/examples/cookbook... 395s Processing new directory /usr/share/pymol/examples/cookbook 395s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 396s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 398s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 398s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 399s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 416s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 421s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 422s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 425s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 427s autopkgtest [07:32:24]: test command4: -----------------------] 431s autopkgtest [07:32:28]: test command4: - - - - - - - - - - results - - - - - - - - - - 431s command4 PASS (superficial) 434s autopkgtest [07:32:31]: test command5: preparing testbed 436s Reading package lists... 437s Building dependency tree... 437s Reading state information... 437s Starting pkgProblemResolver with broken count: 0 437s Starting 2 pkgProblemResolver with broken count: 0 437s Done 438s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 446s autopkgtest [07:32:43]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 446s autopkgtest [07:32:43]: test command5: [----------------------- 448s PyMOL(TM) Molecular Graphics System, Version 3.1.0. 448s Copyright (c) Schrodinger, LLC. 448s All Rights Reserved. 448s 448s Created by Warren L. DeLano, Ph.D. 448s 448s PyMOL is user-supported open-source software. Although some versions 448s are freely available, PyMOL is not in the public domain. 448s 448s If PyMOL is helpful in your work or study, then please volunteer 448s support for our ongoing efforts to create open and affordable scientific 448s software by purchasing a PyMOL Maintenance and/or Support subscription. 448s 448s More information can be found at "http://www.pymol.org". 448s 448s Enter "help" for a list of commands. 448s Enter "help " for information on a specific command. 448s 448s Hit ESC anytime to toggle between text and graphics. 448s 448s Setting: wizard_prompt_mode set to 3. 448s Detected 8 CPU cores. Enabled multithreaded rendering. 448s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 448s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 448s PyMOL>wizard annotation 448s PyMOL>set wizard_prompt_mode,3 448s PyMOL>load_annotated_sdf demo.sdf 448s HBA ['[1, 25, 26, 34]\n'] 448s HBD ['[20]\n'] 448s ACD_NUMBER ['MFCD02681585\n'] 448s SCORE ['-222.044\n'] 448s MOLID ['MFCD02681585\n'] 448s HBA ['[1, 21]\n'] 448s HBD ['[]\n'] 448s ACD_NUMBER ['MFCD01567969\n'] 448s SCORE ['-219.984\n'] 448s MOLID ['MFCD01567969\n'] 448s HBA ['[1, 24]\n'] 448s HBD ['[10, 22]\n'] 448s ACD_NUMBER ['MFCD00023789\n'] 448s SCORE ['-219.911\n'] 448s MOLID ['MFCD00023789\n'] 448s HBA ['[1, 11]\n'] 448s HBD ['[3]\n'] 448s ACD_NUMBER ['MFCD02579443\n'] 448s SCORE ['-219.769\n'] 448s MOLID ['MFCD02579443\n'] 448s HBA ['[1, 11]\n'] 448s HBD ['[9]\n'] 448s ACD_NUMBER ['MFCD02579410\n'] 448s SCORE ['-214.809\n'] 448s MOLID ['MFCD02579410\n'] 448s HBA ['[1, 20, 22, 27, 32]\n'] 448s HBD ['[10, 20]\n'] 448s ACD_NUMBER ['MFCD02579135\n'] 448s SCORE ['-213.630\n'] 448s MOLID ['MFCD02579135\n'] 448s HBA ['[1, 11, 14, 21]\n'] 448s HBD ['[]\n'] 448s ACD_NUMBER ['MFCD02681468\n'] 448s SCORE ['-213.462\n'] 448s MOLID ['MFCD02681468\n'] 448s HBA ['[1, 13, 14, 29]\n'] 448s HBD ['[]\n'] 448s ACD_NUMBER ['MFCD00141070\n'] 448s SCORE ['-213.240\n'] 448s MOLID ['MFCD00141070\n'] 448s HBA ['[1, 8]\n'] 448s HBD ['[]\n'] 448s ACD_NUMBER ['MFCD02983625\n'] 448s SCORE ['-211.422\n'] 448s MOLID ['MFCD02983625\n'] 448s HBA ['[1, 11]\n'] 448s HBD ['[3, 12]\n'] 448s ACD_NUMBER ['MFCD00115818\n'] 448s SCORE ['-210.482\n'] 448s MOLID ['MFCD00115818\n'] 448s autopkgtest [07:32:45]: test command5: -----------------------] 452s autopkgtest [07:32:49]: test command5: - - - - - - - - - - results - - - - - - - - - - 452s command5 PASS (superficial) 456s autopkgtest [07:32:53]: @@@@@@@@@@@@@@@@@@@@ summary 456s command1 PASS (superficial) 456s command2 PASS (superficial) 456s command3 PASS (superficial) 456s command4 PASS (superficial) 456s command5 PASS (superficial)