0s autopkgtest [03:08:47]: starting date and time: 2025-05-03 03:08:47+0000 0s autopkgtest [03:08:47]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [03:08:47]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bf6aj8hs/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:pytest --apt-upgrade mirtop --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.3.5-2 -- lxd -r lxd-armhf-10.145.243.207 lxd-armhf-10.145.243.207:autopkgtest/ubuntu/questing/armhf 20s autopkgtest [03:09:07]: testbed dpkg architecture: armhf 21s autopkgtest [03:09:08]: testbed apt version: 3.0.0 25s autopkgtest [03:09:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 27s autopkgtest [03:09:14]: testbed release detected to be: None 34s autopkgtest [03:09:21]: updating testbed package index (apt update) 36s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 36s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 36s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 37s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 37s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.3 kB] 37s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1920 kB] 37s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB] 37s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [204 kB] 37s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1378 kB] 37s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.5 kB] 37s Get:11 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 37s Get:12 http://ftpmaster.internal/ubuntu questing/main Sources [1395 kB] 37s Get:13 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 37s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 37s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [14.9 MB] 38s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 42s Fetched 43.3 MB in 5s (7905 kB/s) 43s Reading package lists... 48s autopkgtest [03:09:35]: upgrading testbed (apt dist-upgrade and autopurge) 50s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 52s Starting 2 pkgProblemResolver with broken count: 0 52s Done 53s Entering ResolveByKeep 53s 54s Calculating upgrade... 54s The following packages will be upgraded: 54s base-files distro-info-data dpkg dpkg-dev ed fwupd htop libdpkg-perl 54s libftdi1-2 libfwupd3 libnpth0t64 libnvme1t64 libsensors-config libsensors5 54s liburcu8t64 motd-news-config nano ubuntu-pro-client ubuntu-pro-client-l10n 54s usb.ids 55s 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 5431 kB of archives. 55s After this operation, 3722 kB disk space will be freed. 55s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 55s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 55s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 55s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 55s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 55s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 55s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 55s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 55s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 55s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 55s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 55s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 55s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 55s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 55s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 55s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 55s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 55s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 55s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 55s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 56s Fetched 5431 kB in 1s (6708 kB/s) 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 56s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 56s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 56s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 56s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 56s Setting up base-files (13.7ubuntu1) ... 56s Installing new version of config file /etc/issue ... 56s Installing new version of config file /etc/issue.net ... 56s Installing new version of config file /etc/lsb-release ... 57s motd-news.service is a disabled or a static unit not running, not starting it. 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 57s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 57s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 57s Setting up dpkg (1.22.18ubuntu3) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 58s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 58s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 58s Setting up libnpth0t64:armhf (1.8-3) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 58s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 58s Unpacking distro-info-data (0.64) over (0.63) ... 58s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 58s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 58s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 58s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 59s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 59s Unpacking ed (1.21.1-1) over (1.21-1) ... 59s Preparing to unpack .../04-libsensors-config_1%3a3.6.2-2_all.deb ... 59s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 59s Preparing to unpack .../05-libsensors5_1%3a3.6.2-2_armhf.deb ... 59s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 59s Preparing to unpack .../06-liburcu8t64_0.15.2-2_armhf.deb ... 59s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 59s Preparing to unpack .../07-nano_8.4-1_armhf.deb ... 59s Unpacking nano (8.4-1) over (8.3-1) ... 59s Preparing to unpack .../08-usb.ids_2025.04.01-1_all.deb ... 59s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 59s Preparing to unpack .../09-dpkg-dev_1.22.18ubuntu3_all.deb ... 59s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 59s Preparing to unpack .../10-libdpkg-perl_1.22.18ubuntu3_all.deb ... 59s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 59s Preparing to unpack .../11-fwupd_2.0.8-3_armhf.deb ... 60s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 60s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 60s Preparing to unpack .../12-libfwupd3_2.0.8-3_armhf.deb ... 60s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 60s Preparing to unpack .../13-htop_3.4.1-4_armhf.deb ... 60s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 60s Preparing to unpack .../14-libftdi1-2_1.5-10_armhf.deb ... 60s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 60s Preparing to unpack .../15-libnvme1t64_1.13-2_armhf.deb ... 60s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 60s Setting up motd-news-config (13.7ubuntu1) ... 60s Setting up liburcu8t64:armhf (0.15.2-2) ... 60s Setting up distro-info-data (0.64) ... 60s Setting up htop (3.4.1-4) ... 60s Setting up libsensors-config (1:3.6.2-2) ... 60s Installing new version of config file /etc/sensors3.conf ... 60s Setting up libfwupd3:armhf (2.0.8-3) ... 60s Setting up libftdi1-2:armhf (1.5-10) ... 60s Setting up libnvme1t64 (1.13-2) ... 60s Setting up ed (1.21.1-1) ... 60s Setting up usb.ids (2025.04.01-1) ... 60s Setting up libsensors5:armhf (1:3.6.2-2) ... 60s Setting up libdpkg-perl (1.22.18ubuntu3) ... 60s Setting up nano (8.4-1) ... 60s Installing new version of config file /etc/nanorc ... 60s Setting up ubuntu-pro-client (35.1ubuntu0) ... 60s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 60s 61s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 61s 61s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 61s 62s Setting up fwupd (2.0.8-3) ... 63s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 63s fwupd.service is a disabled or a static unit not running, not starting it. 63s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 63s Setting up dpkg-dev (1.22.18ubuntu3) ... 63s Processing triggers for dbus (1.16.2-2ubuntu1) ... 63s Processing triggers for install-info (7.1.1-1) ... 63s Processing triggers for libc-bin (2.41-6ubuntu1) ... 63s Processing triggers for man-db (2.13.0-1) ... 65s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 65s Processing triggers for initramfs-tools (0.147ubuntu1) ... 67s Reading package lists... 68s Building dependency tree... 68s Reading state information... 69s Starting pkgProblemResolver with broken count: 0 69s Starting 2 pkgProblemResolver with broken count: 0 69s Done 70s Solving dependencies... 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s autopkgtest [03:10:00]: rebooting testbed after setup commands that affected boot 113s autopkgtest [03:10:40]: testbed running kernel: Linux 6.8.0-58-generic #60~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 28 14:48:37 UTC 2 137s autopkgtest [03:11:04]: @@@@@@@@@@@@@@@@@@@@ apt-source mirtop 151s Get:1 http://ftpmaster.internal/ubuntu questing/universe mirtop 0.4.28-3 (dsc) [2340 B] 151s Get:2 http://ftpmaster.internal/ubuntu questing/universe mirtop 0.4.28-3 (tar) [718 kB] 151s Get:3 http://ftpmaster.internal/ubuntu questing/universe mirtop 0.4.28-3 (diff) [10.8 kB] 151s gpgv: Signature made Wed Feb 19 16:46:43 2025 UTC 151s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 151s gpgv: issuer "tchet@debian.org" 151s gpgv: Can't check signature: No public key 151s dpkg-source: warning: cannot verify inline signature for ./mirtop_0.4.28-3.dsc: no acceptable signature found 151s autopkgtest [03:11:18]: testing package mirtop version 0.4.28-3 154s autopkgtest [03:11:21]: build not needed 156s autopkgtest [03:11:23]: test run-unit-test: preparing testbed 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 159s Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 160s The following NEW packages will be installed: 160s bedtools fontconfig-config fonts-dejavu-core fonts-dejavu-mono 160s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 160s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 160s libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 160s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 160s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 160s libxrender1 mirtop python3-all python3-biopython python3-cairo 160s python3-freetype python3-iniconfig python3-mirtop python3-numpy 160s python3-numpy-dev python3-pandas python3-pandas-lib python3-pil 160s python3-pluggy python3-pybedtools python3-pysam python3-pytest python3-pytz 160s python3-reportlab python3-rlpycairo python3-tz samtools seqan-apps sgml-base 160s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 160s 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 61.7 MB of archives. 160s After this operation, 213 MB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf python3-numpy-dev armhf 1:2.2.3+ds-5 [141 kB] 161s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf libblas3 armhf 3.12.1-2 [132 kB] 161s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran5 armhf 15-20250404-0ubuntu1 [331 kB] 161s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 161s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf python3-numpy armhf 1:2.2.3+ds-5 [3725 kB] 161s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf sgml-base all 1.31 [11.4 kB] 161s Get:7 http://ftpmaster.internal/ubuntu questing/universe armhf bedtools armhf 2.31.1+dfsg-2 [739 kB] 161s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 161s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 161s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 161s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 161s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf x11-common all 1:7.7+23ubuntu4 [21.8 kB] 161s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 161s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 161s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 162s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig-config armhf 2.15.0-2.2ubuntu1 [37.9 kB] 162s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfontconfig1 armhf 2.15.0-2.2ubuntu1 [114 kB] 162s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 162s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 162s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 162s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 162s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf libcairo2 armhf 1.18.4-1 [483 kB] 162s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 162s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf libgomp1 armhf 15-20250404-0ubuntu1 [128 kB] 162s Get:25 http://ftpmaster.internal/ubuntu questing/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 162s Get:26 http://ftpmaster.internal/ubuntu questing/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 162s Get:27 http://ftpmaster.internal/ubuntu questing/universe armhf libhtscodecs2 armhf 1.6.1-2 [67.5 kB] 162s Get:28 http://ftpmaster.internal/ubuntu questing/universe armhf libhts3t64 armhf 1.21+ds-1 [399 kB] 162s Get:29 http://ftpmaster.internal/ubuntu questing/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 162s Get:30 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 162s Get:31 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 162s Get:32 http://ftpmaster.internal/ubuntu questing/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 162s Get:33 http://ftpmaster.internal/ubuntu questing/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 162s Get:34 http://ftpmaster.internal/ubuntu questing/main armhf libraqm0 armhf 0.10.2-1 [12.4 kB] 162s Get:35 http://ftpmaster.internal/ubuntu questing/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 162s Get:36 http://ftpmaster.internal/ubuntu questing/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 162s Get:37 http://ftpmaster.internal/ubuntu questing/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 162s Get:38 http://ftpmaster.internal/ubuntu questing/main armhf libtiff6 armhf 4.7.0-3ubuntu1 [184 kB] 162s Get:39 http://ftpmaster.internal/ubuntu questing/main armhf libwebpdemux2 armhf 1.5.0-0.1 [11.5 kB] 162s Get:40 http://ftpmaster.internal/ubuntu questing/main armhf libwebpmux3 armhf 1.5.0-0.1 [22.4 kB] 162s Get:41 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pysam armhf 0.23.0+ds-1build1 [3569 kB] 162s Get:42 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pybedtools armhf 0.10.0-4build1 [12.2 MB] 162s Get:43 http://ftpmaster.internal/ubuntu questing/main armhf python3-pytz all 2025.1-3 [162 kB] 162s Get:44 http://ftpmaster.internal/ubuntu questing/main armhf python3-tz all 2025.1-3 [1866 B] 162s Get:45 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-8build1 [4877 kB] 163s Get:46 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 163s Get:47 http://ftpmaster.internal/ubuntu questing/main armhf libopenjp2-7 armhf 2.5.3-2 [172 kB] 163s Get:48 http://ftpmaster.internal/ubuntu questing/main armhf python3-pil armhf 11.1.0-5build1 [435 kB] 163s Get:49 http://ftpmaster.internal/ubuntu questing/main armhf python3-cairo armhf 1.27.0-2 [115 kB] 163s Get:50 http://ftpmaster.internal/ubuntu questing/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 163s Get:51 http://ftpmaster.internal/ubuntu questing/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 163s Get:52 http://ftpmaster.internal/ubuntu questing/universe armhf python3-reportlab all 4.3.1-1 [1137 kB] 163s Get:53 http://ftpmaster.internal/ubuntu questing/main armhf xml-core all 0.19 [20.3 kB] 163s Get:54 http://ftpmaster.internal/ubuntu questing/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 163s Get:55 http://ftpmaster.internal/ubuntu questing/universe armhf python3-biopython armhf 1.85+dfsg-2build1 [1692 kB] 163s Get:56 http://ftpmaster.internal/ubuntu questing/universe armhf python3-mirtop all 0.4.28-3 [61.7 kB] 163s Get:57 http://ftpmaster.internal/ubuntu questing/universe armhf mirtop all 0.4.28-3 [13.5 kB] 163s Get:58 http://ftpmaster.internal/ubuntu questing/main armhf python3-all armhf 3.13.3-1 [880 B] 163s Get:59 http://ftpmaster.internal/ubuntu questing/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 163s Get:60 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 163s Get:61 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf python3-pytest all 8.3.5-2 [252 kB] 163s Get:62 http://ftpmaster.internal/ubuntu questing/universe armhf samtools armhf 1.21-1 [619 kB] 163s Get:63 http://ftpmaster.internal/ubuntu questing/universe armhf seqan-apps armhf 2.4.0+dfsg-16 [9459 kB] 164s Fetched 61.7 MB in 3s (20.4 MB/s) 164s Selecting previously unselected package python3-numpy-dev:armhf. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63951 files and directories currently installed.) 164s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_armhf.deb ... 164s Unpacking python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 164s Selecting previously unselected package libblas3:armhf. 164s Preparing to unpack .../01-libblas3_3.12.1-2_armhf.deb ... 164s Unpacking libblas3:armhf (3.12.1-2) ... 164s Selecting previously unselected package libgfortran5:armhf. 164s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_armhf.deb ... 164s Unpacking libgfortran5:armhf (15-20250404-0ubuntu1) ... 164s Selecting previously unselected package liblapack3:armhf. 164s Preparing to unpack .../03-liblapack3_3.12.1-2_armhf.deb ... 164s Unpacking liblapack3:armhf (3.12.1-2) ... 164s Selecting previously unselected package python3-numpy. 164s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_armhf.deb ... 165s Unpacking python3-numpy (1:2.2.3+ds-5) ... 165s Selecting previously unselected package sgml-base. 165s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 165s Unpacking sgml-base (1.31) ... 165s Selecting previously unselected package bedtools. 165s Preparing to unpack .../06-bedtools_2.31.1+dfsg-2_armhf.deb ... 165s Unpacking bedtools (2.31.1+dfsg-2) ... 165s Selecting previously unselected package fonts-dejavu-mono. 165s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8_all.deb ... 165s Unpacking fonts-dejavu-mono (2.37-8) ... 165s Selecting previously unselected package fonts-dejavu-core. 165s Preparing to unpack .../08-fonts-dejavu-core_2.37-8_all.deb ... 165s Unpacking fonts-dejavu-core (2.37-8) ... 165s Selecting previously unselected package libfontenc1:armhf. 165s Preparing to unpack .../09-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 165s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 165s Selecting previously unselected package libfreetype6:armhf. 165s Preparing to unpack .../10-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 165s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 165s Selecting previously unselected package x11-common. 165s Preparing to unpack .../11-x11-common_1%3a7.7+23ubuntu4_all.deb ... 165s Unpacking x11-common (1:7.7+23ubuntu4) ... 165s Selecting previously unselected package xfonts-encodings. 165s Preparing to unpack .../12-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 165s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 165s Selecting previously unselected package xfonts-utils. 165s Preparing to unpack .../13-xfonts-utils_1%3a7.7+7_armhf.deb ... 165s Unpacking xfonts-utils (1:7.7+7) ... 165s Selecting previously unselected package fonts-urw-base35. 165s Preparing to unpack .../14-fonts-urw-base35_20200910-8_all.deb ... 166s Unpacking fonts-urw-base35 (20200910-8) ... 166s Selecting previously unselected package fontconfig-config. 166s Preparing to unpack .../15-fontconfig-config_2.15.0-2.2ubuntu1_armhf.deb ... 166s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 166s Selecting previously unselected package libfontconfig1:armhf. 166s Preparing to unpack .../16-libfontconfig1_2.15.0-2.2ubuntu1_armhf.deb ... 166s Unpacking libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 166s Selecting previously unselected package libpixman-1-0:armhf. 166s Preparing to unpack .../17-libpixman-1-0_0.44.0-3_armhf.deb ... 166s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 166s Selecting previously unselected package libxcb-render0:armhf. 166s Preparing to unpack .../18-libxcb-render0_1.17.0-2_armhf.deb ... 166s Unpacking libxcb-render0:armhf (1.17.0-2) ... 166s Selecting previously unselected package libxcb-shm0:armhf. 166s Preparing to unpack .../19-libxcb-shm0_1.17.0-2_armhf.deb ... 166s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 166s Selecting previously unselected package libxrender1:armhf. 166s Preparing to unpack .../20-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 166s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 166s Selecting previously unselected package libcairo2:armhf. 166s Preparing to unpack .../21-libcairo2_1.18.4-1_armhf.deb ... 166s Unpacking libcairo2:armhf (1.18.4-1) ... 166s Selecting previously unselected package libdeflate0:armhf. 166s Preparing to unpack .../22-libdeflate0_1.23-1_armhf.deb ... 166s Unpacking libdeflate0:armhf (1.23-1) ... 166s Selecting previously unselected package libgomp1:armhf. 166s Preparing to unpack .../23-libgomp1_15-20250404-0ubuntu1_armhf.deb ... 166s Unpacking libgomp1:armhf (15-20250404-0ubuntu1) ... 167s Selecting previously unselected package libgraphite2-3:armhf. 167s Preparing to unpack .../24-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 167s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 167s Selecting previously unselected package libharfbuzz0b:armhf. 167s Preparing to unpack .../25-libharfbuzz0b_10.2.0-1_armhf.deb ... 167s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 167s Selecting previously unselected package libhtscodecs2:armhf. 167s Preparing to unpack .../26-libhtscodecs2_1.6.1-2_armhf.deb ... 167s Unpacking libhtscodecs2:armhf (1.6.1-2) ... 167s Selecting previously unselected package libhts3t64:armhf. 167s Preparing to unpack .../27-libhts3t64_1.21+ds-1_armhf.deb ... 167s Unpacking libhts3t64:armhf (1.21+ds-1) ... 167s Selecting previously unselected package libimagequant0:armhf. 167s Preparing to unpack .../28-libimagequant0_2.18.0-1build1_armhf.deb ... 167s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 167s Selecting previously unselected package libjpeg-turbo8:armhf. 167s Preparing to unpack .../29-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 167s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 167s Selecting previously unselected package libjpeg8:armhf. 167s Preparing to unpack .../30-libjpeg8_8c-2ubuntu11_armhf.deb ... 167s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 167s Selecting previously unselected package liblcms2-2:armhf. 167s Preparing to unpack .../31-liblcms2-2_2.16-2_armhf.deb ... 167s Unpacking liblcms2-2:armhf (2.16-2) ... 167s Selecting previously unselected package liblerc4:armhf. 167s Preparing to unpack .../32-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 167s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 167s Selecting previously unselected package libraqm0:armhf. 167s Preparing to unpack .../33-libraqm0_0.10.2-1_armhf.deb ... 167s Unpacking libraqm0:armhf (0.10.2-1) ... 167s Selecting previously unselected package libsharpyuv0:armhf. 167s Preparing to unpack .../34-libsharpyuv0_1.5.0-0.1_armhf.deb ... 167s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 167s Selecting previously unselected package libjbig0:armhf. 167s Preparing to unpack .../35-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 167s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 167s Selecting previously unselected package libwebp7:armhf. 167s Preparing to unpack .../36-libwebp7_1.5.0-0.1_armhf.deb ... 167s Unpacking libwebp7:armhf (1.5.0-0.1) ... 167s Selecting previously unselected package libtiff6:armhf. 167s Preparing to unpack .../37-libtiff6_4.7.0-3ubuntu1_armhf.deb ... 167s Unpacking libtiff6:armhf (4.7.0-3ubuntu1) ... 167s Selecting previously unselected package libwebpdemux2:armhf. 167s Preparing to unpack .../38-libwebpdemux2_1.5.0-0.1_armhf.deb ... 167s Unpacking libwebpdemux2:armhf (1.5.0-0.1) ... 167s Selecting previously unselected package libwebpmux3:armhf. 167s Preparing to unpack .../39-libwebpmux3_1.5.0-0.1_armhf.deb ... 167s Unpacking libwebpmux3:armhf (1.5.0-0.1) ... 167s Selecting previously unselected package python3-pysam. 167s Preparing to unpack .../40-python3-pysam_0.23.0+ds-1build1_armhf.deb ... 167s Unpacking python3-pysam (0.23.0+ds-1build1) ... 168s Selecting previously unselected package python3-pybedtools. 168s Preparing to unpack .../41-python3-pybedtools_0.10.0-4build1_armhf.deb ... 168s Unpacking python3-pybedtools (0.10.0-4build1) ... 168s Selecting previously unselected package python3-pytz. 168s Preparing to unpack .../42-python3-pytz_2025.1-3_all.deb ... 168s Unpacking python3-pytz (2025.1-3) ... 168s Selecting previously unselected package python3-tz. 168s Preparing to unpack .../43-python3-tz_2025.1-3_all.deb ... 168s Unpacking python3-tz (2025.1-3) ... 168s Selecting previously unselected package python3-pandas-lib:armhf. 168s Preparing to unpack .../44-python3-pandas-lib_2.2.3+dfsg-8build1_armhf.deb ... 168s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-8build1) ... 168s Selecting previously unselected package python3-pandas. 168s Preparing to unpack .../45-python3-pandas_2.2.3+dfsg-8build1_all.deb ... 168s Unpacking python3-pandas (2.2.3+dfsg-8build1) ... 169s Selecting previously unselected package libopenjp2-7:armhf. 169s Preparing to unpack .../46-libopenjp2-7_2.5.3-2_armhf.deb ... 169s Unpacking libopenjp2-7:armhf (2.5.3-2) ... 169s Selecting previously unselected package python3-pil:armhf. 169s Preparing to unpack .../47-python3-pil_11.1.0-5build1_armhf.deb ... 169s Unpacking python3-pil:armhf (11.1.0-5build1) ... 169s Selecting previously unselected package python3-cairo. 169s Preparing to unpack .../48-python3-cairo_1.27.0-2_armhf.deb ... 169s Unpacking python3-cairo (1.27.0-2) ... 169s Selecting previously unselected package python3-freetype. 169s Preparing to unpack .../49-python3-freetype_2.5.1-1_all.deb ... 169s Unpacking python3-freetype (2.5.1-1) ... 169s Selecting previously unselected package python3-rlpycairo. 169s Preparing to unpack .../50-python3-rlpycairo_0.3.0-3_all.deb ... 169s Unpacking python3-rlpycairo (0.3.0-3) ... 169s Selecting previously unselected package python3-reportlab. 169s Preparing to unpack .../51-python3-reportlab_4.3.1-1_all.deb ... 169s Unpacking python3-reportlab (4.3.1-1) ... 169s Selecting previously unselected package xml-core. 169s Preparing to unpack .../52-xml-core_0.19_all.deb ... 169s Unpacking xml-core (0.19) ... 169s Selecting previously unselected package w3c-sgml-lib. 169s Preparing to unpack .../53-w3c-sgml-lib_1.3-3_all.deb ... 169s Unpacking w3c-sgml-lib (1.3-3) ... 169s Selecting previously unselected package python3-biopython. 169s Preparing to unpack .../54-python3-biopython_1.85+dfsg-2build1_armhf.deb ... 169s Unpacking python3-biopython (1.85+dfsg-2build1) ... 169s Selecting previously unselected package python3-mirtop. 169s Preparing to unpack .../55-python3-mirtop_0.4.28-3_all.deb ... 169s Unpacking python3-mirtop (0.4.28-3) ... 169s Selecting previously unselected package mirtop. 170s Preparing to unpack .../56-mirtop_0.4.28-3_all.deb ... 170s Unpacking mirtop (0.4.28-3) ... 170s Selecting previously unselected package python3-all. 170s Preparing to unpack .../57-python3-all_3.13.3-1_armhf.deb ... 170s Unpacking python3-all (3.13.3-1) ... 170s Selecting previously unselected package python3-iniconfig. 170s Preparing to unpack .../58-python3-iniconfig_1.1.1-2_all.deb ... 170s Unpacking python3-iniconfig (1.1.1-2) ... 170s Selecting previously unselected package python3-pluggy. 170s Preparing to unpack .../59-python3-pluggy_1.5.0-1_all.deb ... 170s Unpacking python3-pluggy (1.5.0-1) ... 170s Selecting previously unselected package python3-pytest. 170s Preparing to unpack .../60-python3-pytest_8.3.5-2_all.deb ... 170s Unpacking python3-pytest (8.3.5-2) ... 170s Selecting previously unselected package samtools. 170s Preparing to unpack .../61-samtools_1.21-1_armhf.deb ... 170s Unpacking samtools (1.21-1) ... 170s Selecting previously unselected package seqan-apps. 170s Preparing to unpack .../62-seqan-apps_2.4.0+dfsg-16_armhf.deb ... 170s Unpacking seqan-apps (2.4.0+dfsg-16) ... 170s Setting up libhtscodecs2:armhf (1.6.1-2) ... 170s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 170s Setting up liblcms2-2:armhf (2.16-2) ... 170s Setting up python3-iniconfig (1.1.1-2) ... 170s Setting up libpixman-1-0:armhf (0.44.0-3) ... 170s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 170s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 170s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 170s Setting up libxcb-render0:armhf (1.17.0-2) ... 170s Setting up x11-common (1:7.7+23ubuntu4) ... 171s Setting up libdeflate0:armhf (1.23-1) ... 171s Setting up python3-all (3.13.3-1) ... 171s Setting up python3-pytz (2025.1-3) ... 171s Setting up libxcb-shm0:armhf (1.17.0-2) ... 171s Setting up libgomp1:armhf (15-20250404-0ubuntu1) ... 171s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 171s Setting up python3-tz (2025.1-3) ... 171s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 171s Setting up libblas3:armhf (3.12.1-2) ... 171s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 171s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 171s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 171s Setting up libimagequant0:armhf (2.18.0-1build1) ... 171s Setting up seqan-apps (2.4.0+dfsg-16) ... 171s Setting up fonts-dejavu-mono (2.37-8) ... 171s Setting up python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 171s Setting up fonts-dejavu-core (2.37-8) ... 171s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 171s Setting up libgfortran5:armhf (15-20250404-0ubuntu1) ... 171s Setting up python3-pluggy (1.5.0-1) ... 171s Setting up libwebp7:armhf (1.5.0-0.1) ... 171s Setting up libhts3t64:armhf (1.21+ds-1) ... 171s Setting up libopenjp2-7:armhf (2.5.3-2) ... 171s Setting up libharfbuzz0b:armhf (10.2.0-1) ... 171s Setting up sgml-base (1.31) ... 171s Setting up libwebpmux3:armhf (1.5.0-0.1) ... 171s Setting up bedtools (2.31.1+dfsg-2) ... 171s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 171s Setting up liblapack3:armhf (3.12.1-2) ... 171s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 171s Setting up python3-pysam (0.23.0+ds-1build1) ... 172s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 172s Setting up python3-pytest (8.3.5-2) ... 172s Setting up libwebpdemux2:armhf (1.5.0-0.1) ... 172s Setting up python3-freetype (2.5.1-1) ... 173s Setting up xfonts-utils (1:7.7+7) ... 173s Setting up samtools (1.21-1) ... 173s Setting up libraqm0:armhf (0.10.2-1) ... 173s Setting up python3-numpy (1:2.2.3+ds-5) ... 175s Setting up libtiff6:armhf (4.7.0-3ubuntu1) ... 175s Setting up xml-core (0.19) ... 175s Setting up libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 175s Setting up python3-pybedtools (0.10.0-4build1) ... 176s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-8build1) ... 176s Setting up fonts-urw-base35 (20200910-8) ... 176s Setting up libcairo2:armhf (1.18.4-1) ... 176s Setting up python3-pil:armhf (11.1.0-5build1) ... 176s Setting up python3-pandas (2.2.3+dfsg-8build1) ... 182s Setting up python3-cairo (1.27.0-2) ... 183s Setting up python3-rlpycairo (0.3.0-3) ... 183s Setting up python3-reportlab (4.3.1-1) ... 184s Processing triggers for libc-bin (2.41-6ubuntu1) ... 184s Processing triggers for man-db (2.13.0-1) ... 185s Processing triggers for sgml-base (1.31) ... 185s Setting up w3c-sgml-lib (1.3-3) ... 218s Setting up python3-biopython (1.85+dfsg-2build1) ... 220s Setting up python3-mirtop (0.4.28-3) ... 220s Setting up mirtop (0.4.28-3) ... 229s autopkgtest [03:12:36]: test run-unit-test: [----------------------- 231s Testing with python3.13 in /tmp/autopkgtest.c9Fiz5/autopkgtest_tmp: 232s ============================= test session starts ============================== 232s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3 232s cachedir: .pytest_cache 232s rootdir: /tmp/autopkgtest.c9Fiz5/autopkgtest_tmp 232s plugins: typeguard-4.4.2 232s collecting ... collected 62 items 232s 233s test/test_automated_analysis.py::AutomatedAnalysisTest::test_count PASSED [ 1%] 234s test/test_automated_analysis.py::AutomatedAnalysisTest::test_export_fasta PASSED [ 3%] 235s test/test_automated_analysis.py::AutomatedAnalysisTest::test_export_seqbuster PASSED [ 4%] 236s test/test_automated_analysis.py::AutomatedAnalysisTest::test_export_vcf PASSED [ 6%] 237s test/test_automated_analysis.py::AutomatedAnalysisTest::test_merge_bam PASSED [ 8%] 237s test/test_automated_analysis.py::AutomatedAnalysisTest::test_simulate PASSED [ 9%] 239s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_create_1_cmd PASSED [ 11%] 241s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_create_2_cmd PASSED [ 12%] 242s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectColumns_cmd PASSED [ 14%] 244s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectCount_cmd PASSED [ 16%] 245s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectFilter_cmd PASSED [ 17%] 246s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectLimit_cmd PASSED [ 19%] 247s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectMirna_cmd PASSED [ 20%] 248s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectTextOut_cmd PASSED [ 22%] 249s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectiVariant_cmd PASSED [ 24%] 250s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_descSummary_cmd PASSED [ 25%] 252s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_showColumns_cmd PASSED [ 27%] 253s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_showSchema_cmd PASSED [ 29%] 254s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_showTables_cmd PASSED [ 30%] 255s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_statIsomirsFile_cmd PASSED [ 32%] 256s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_statIsomirs_cmd PASSED [ 33%] 257s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_bam PASSED [ 35%] 258s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_bam_chunk PASSED [ 37%] 260s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_genomic_bam PASSED [ 38%] 261s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_genomic_bam_low_memory PASSED [ 40%] 262s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_stats PASSED [ 41%] 263s test/test_automated_analysis.py::AutomatedAnalysisTest::test_update_cmd PASSED [ 43%] 264s test/test_automated_analysis.py::AutomatedAnalysisTest::test_validate_cmd PASSED [ 45%] 264s test/test_functions.py::FunctionsTest::test_alignment PASSED [ 46%] 264s test/test_functions.py::FunctionsTest::test_alignment_genomic PASSED [ 48%] 264s test/test_functions.py::FunctionsTest::test_cigar PASSED [ 50%] 264s test/test_functions.py::FunctionsTest::test_class PASSED [ 51%] 264s test/test_functions.py::FunctionsTest::test_code PASSED [ 53%] 264s test/test_functions.py::FunctionsTest::test_code_convert PASSED [ 54%] 264s test/test_functions.py::FunctionsTest::test_collapse PASSED [ 56%] 265s test/test_functions.py::FunctionsTest::test_counts PASSED [ 58%] 265s test/test_functions.py::FunctionsTest::test_database PASSED [ 59%] 265s test/test_functions.py::FunctionsTest::test_error69 PASSED [ 61%] 265s test/test_functions.py::FunctionsTest::test_export_fasta PASSED [ 62%] 265s test/test_functions.py::FunctionsTest::test_gff PASSED [ 64%] 265s test/test_functions.py::FunctionsTest::test_is_sequence PASSED [ 66%] 265s test/test_functions.py::FunctionsTest::test_issue64 PASSED [ 67%] 265s test/test_functions.py::FunctionsTest::test_keep_name PASSED [ 69%] 265s test/test_functions.py::FunctionsTest::test_locala PASSED [ 70%] 265s test/test_functions.py::FunctionsTest::test_merge PASSED [ 72%] 265s test/test_functions.py::FunctionsTest::test_optimir PASSED [ 74%] 265s test/test_functions.py::FunctionsTest::test_prost PASSED [ 75%] 265s test/test_functions.py::FunctionsTest::test_read_hairpin PASSED [ 77%] 265s test/test_functions.py::FunctionsTest::test_read_hairpin_mirgenedb PASSED [ 79%] 265s test/test_functions.py::FunctionsTest::test_read_line PASSED [ 80%] 265s test/test_functions.py::FunctionsTest::test_read_mir2chr PASSED [ 82%] 265s test/test_functions.py::FunctionsTest::test_read_mir2genomic PASSED [ 83%] 265s test/test_functions.py::FunctionsTest::test_reverse PASSED [ 85%] 265s test/test_functions.py::FunctionsTest::test_seqbuster PASSED [ 87%] 265s test/test_functions.py::FunctionsTest::test_spikeins PASSED [ 88%] 266s test/test_functions.py::FunctionsTest::test_sql PASSED [ 90%] 266s test/test_functions.py::FunctionsTest::test_srnabench PASSED [ 91%] 266s test/test_functions.py::FunctionsTest::test_stats PASSED [ 93%] 266s test/test_functions.py::FunctionsTest::test_string_variant PASSED [ 95%] 266s test/test_functions.py::FunctionsTest::test_update PASSED [ 96%] 266s test/test_functions.py::FunctionsTest::test_validator PASSED [ 98%] 266s test/test_functions.py::FunctionsTest::test_variant PASSED [100%] 266s 266s =============================== warnings summary =============================== 266s test/test_functions.py::FunctionsTest::test_alignment 266s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 266s warnings.warn( 266s 266s test/test_functions.py::FunctionsTest::test_collapse 266s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 266s return self.run(*args, **kwds) 266s 266s test/test_functions.py::FunctionsTest::test_counts 266s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 266s return self.run(*args, **kwds) 266s 266s test/test_functions.py::FunctionsTest::test_gff 266s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 266s return self.run(*args, **kwds) 266s 266s test/test_functions.py::FunctionsTest::test_read_hairpin 266s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 266s return self.run(*args, **kwds) 266s 266s test/test_functions.py::FunctionsTest::test_sql 266s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 266s return self.run(*args, **kwds) 266s 266s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 266s ======================= 62 passed, 6 warnings in 34.55s ======================== 267s autopkgtest [03:13:14]: test run-unit-test: -----------------------] 271s run-unit-test PASS 271s autopkgtest [03:13:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 274s autopkgtest [03:13:21]: test autodep8-python3: preparing testbed 297s autopkgtest [03:13:44]: testbed dpkg architecture: armhf 299s autopkgtest [03:13:46]: testbed apt version: 3.0.0 302s autopkgtest [03:13:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 304s autopkgtest [03:13:51]: testbed release detected to be: questing 311s autopkgtest [03:13:58]: updating testbed package index (apt update) 313s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 314s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 314s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 314s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 314s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB] 314s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.3 kB] 314s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1920 kB] 314s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [204 kB] 314s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1378 kB] 314s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.5 kB] 314s Get:11 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 315s Get:12 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 315s Get:13 http://ftpmaster.internal/ubuntu questing/main Sources [1395 kB] 315s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 315s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [14.9 MB] 315s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 319s Fetched 43.3 MB in 6s (7701 kB/s) 320s Reading package lists... 326s autopkgtest [03:14:13]: upgrading testbed (apt dist-upgrade and autopurge) 328s Reading package lists... 328s Building dependency tree... 328s Reading state information... 329s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 329s Starting 2 pkgProblemResolver with broken count: 0 329s Done 330s Entering ResolveByKeep 331s 331s Calculating upgrade... 332s The following packages will be upgraded: 332s base-files distro-info-data dpkg dpkg-dev ed fwupd htop libdpkg-perl 332s libftdi1-2 libfwupd3 libnpth0t64 libnvme1t64 libsensors-config libsensors5 332s liburcu8t64 motd-news-config nano ubuntu-pro-client ubuntu-pro-client-l10n 332s usb.ids 332s 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 332s Need to get 5431 kB of archives. 332s After this operation, 3722 kB disk space will be freed. 332s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 332s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 332s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 332s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 332s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 332s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 332s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 332s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 332s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 332s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 332s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 332s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 332s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 333s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 333s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 333s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 333s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 333s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 333s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 333s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 333s Fetched 5431 kB in 1s (6421 kB/s) 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 333s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 333s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 333s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 334s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 334s Setting up base-files (13.7ubuntu1) ... 334s Installing new version of config file /etc/issue ... 334s Installing new version of config file /etc/issue.net ... 334s Installing new version of config file /etc/lsb-release ... 334s motd-news.service is a disabled or a static unit not running, not starting it. 335s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 335s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 335s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 335s Setting up dpkg (1.22.18ubuntu3) ... 335s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 335s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 335s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 335s Setting up libnpth0t64:armhf (1.8-3) ... 335s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 335s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 335s Unpacking distro-info-data (0.64) over (0.63) ... 335s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 335s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 335s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 336s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 336s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 336s Unpacking ed (1.21.1-1) over (1.21-1) ... 336s Preparing to unpack .../04-libsensors-config_1%3a3.6.2-2_all.deb ... 336s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 336s Preparing to unpack .../05-libsensors5_1%3a3.6.2-2_armhf.deb ... 336s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 336s Preparing to unpack .../06-liburcu8t64_0.15.2-2_armhf.deb ... 336s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 336s Preparing to unpack .../07-nano_8.4-1_armhf.deb ... 336s Unpacking nano (8.4-1) over (8.3-1) ... 336s Preparing to unpack .../08-usb.ids_2025.04.01-1_all.deb ... 336s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 336s Preparing to unpack .../09-dpkg-dev_1.22.18ubuntu3_all.deb ... 336s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 336s Preparing to unpack .../10-libdpkg-perl_1.22.18ubuntu3_all.deb ... 336s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 336s Preparing to unpack .../11-fwupd_2.0.8-3_armhf.deb ... 337s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 337s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 337s Preparing to unpack .../12-libfwupd3_2.0.8-3_armhf.deb ... 337s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 337s Preparing to unpack .../13-htop_3.4.1-4_armhf.deb ... 337s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 337s Preparing to unpack .../14-libftdi1-2_1.5-10_armhf.deb ... 337s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 337s Preparing to unpack .../15-libnvme1t64_1.13-2_armhf.deb ... 337s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 337s Setting up motd-news-config (13.7ubuntu1) ... 337s Setting up liburcu8t64:armhf (0.15.2-2) ... 337s Setting up distro-info-data (0.64) ... 337s Setting up htop (3.4.1-4) ... 337s Setting up libsensors-config (1:3.6.2-2) ... 337s Installing new version of config file /etc/sensors3.conf ... 337s Setting up libfwupd3:armhf (2.0.8-3) ... 337s Setting up libftdi1-2:armhf (1.5-10) ... 337s Setting up libnvme1t64 (1.13-2) ... 337s Setting up ed (1.21.1-1) ... 337s Setting up usb.ids (2025.04.01-1) ... 337s Setting up libsensors5:armhf (1:3.6.2-2) ... 337s Setting up libdpkg-perl (1.22.18ubuntu3) ... 337s Setting up nano (8.4-1) ... 337s Installing new version of config file /etc/nanorc ... 337s Setting up ubuntu-pro-client (35.1ubuntu0) ... 337s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 337s 338s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 338s 338s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 338s 339s Setting up fwupd (2.0.8-3) ... 340s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 340s fwupd.service is a disabled or a static unit not running, not starting it. 340s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 340s Setting up dpkg-dev (1.22.18ubuntu3) ... 340s Processing triggers for dbus (1.16.2-2ubuntu1) ... 340s Processing triggers for install-info (7.1.1-1) ... 340s Processing triggers for libc-bin (2.41-6ubuntu1) ... 340s Processing triggers for man-db (2.13.0-1) ... 342s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 342s Processing triggers for initramfs-tools (0.147ubuntu1) ... 344s Reading package lists... 345s Building dependency tree... 345s Reading state information... 346s Starting pkgProblemResolver with broken count: 0 346s Starting 2 pkgProblemResolver with broken count: 0 346s Done 347s Solving dependencies... 348s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 350s autopkgtest [03:14:37]: rebooting testbed after setup commands that affected boot 413s Reading package lists... 413s Building dependency tree... 413s Reading state information... 414s Starting pkgProblemResolver with broken count: 0 414s Starting 2 pkgProblemResolver with broken count: 0 414s Done 416s The following NEW packages will be installed: 416s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 416s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 416s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 416s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 416s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 416s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python3-all 416s python3-biopython python3-cairo python3-freetype python3-mirtop 416s python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib 416s python3-pil python3-pybedtools python3-pysam python3-pytz python3-reportlab 416s python3-rlpycairo python3-tz sgml-base w3c-sgml-lib x11-common 416s xfonts-encodings xfonts-utils xml-core 416s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 416s Need to get 50.6 MB of archives. 416s After this operation, 168 MB of additional disk space will be used. 416s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf python3-numpy-dev armhf 1:2.2.3+ds-5 [141 kB] 416s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf libblas3 armhf 3.12.1-2 [132 kB] 416s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran5 armhf 15-20250404-0ubuntu1 [331 kB] 416s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 417s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf python3-numpy armhf 1:2.2.3+ds-5 [3725 kB] 417s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf sgml-base all 1.31 [11.4 kB] 417s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 417s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 417s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 417s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 417s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf x11-common all 1:7.7+23ubuntu4 [21.8 kB] 417s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 417s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 417s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 417s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig-config armhf 2.15.0-2.2ubuntu1 [37.9 kB] 417s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf libfontconfig1 armhf 2.15.0-2.2ubuntu1 [114 kB] 417s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 417s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 417s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 417s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 417s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf libcairo2 armhf 1.18.4-1 [483 kB] 417s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 417s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libgomp1 armhf 15-20250404-0ubuntu1 [128 kB] 417s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 417s Get:25 http://ftpmaster.internal/ubuntu questing/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 417s Get:26 http://ftpmaster.internal/ubuntu questing/universe armhf libhtscodecs2 armhf 1.6.1-2 [67.5 kB] 417s Get:27 http://ftpmaster.internal/ubuntu questing/universe armhf libhts3t64 armhf 1.21+ds-1 [399 kB] 417s Get:28 http://ftpmaster.internal/ubuntu questing/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 417s Get:29 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 417s Get:30 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 417s Get:31 http://ftpmaster.internal/ubuntu questing/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 417s Get:32 http://ftpmaster.internal/ubuntu questing/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 417s Get:33 http://ftpmaster.internal/ubuntu questing/main armhf libraqm0 armhf 0.10.2-1 [12.4 kB] 417s Get:34 http://ftpmaster.internal/ubuntu questing/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 417s Get:35 http://ftpmaster.internal/ubuntu questing/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 417s Get:36 http://ftpmaster.internal/ubuntu questing/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 417s Get:37 http://ftpmaster.internal/ubuntu questing/main armhf libtiff6 armhf 4.7.0-3ubuntu1 [184 kB] 417s Get:38 http://ftpmaster.internal/ubuntu questing/main armhf libwebpdemux2 armhf 1.5.0-0.1 [11.5 kB] 417s Get:39 http://ftpmaster.internal/ubuntu questing/main armhf libwebpmux3 armhf 1.5.0-0.1 [22.4 kB] 417s Get:40 http://ftpmaster.internal/ubuntu questing/main armhf python3-all armhf 3.13.3-1 [880 B] 417s Get:41 http://ftpmaster.internal/ubuntu questing/main armhf libopenjp2-7 armhf 2.5.3-2 [172 kB] 417s Get:42 http://ftpmaster.internal/ubuntu questing/main armhf python3-pil armhf 11.1.0-5build1 [435 kB] 417s Get:43 http://ftpmaster.internal/ubuntu questing/main armhf python3-cairo armhf 1.27.0-2 [115 kB] 417s Get:44 http://ftpmaster.internal/ubuntu questing/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 417s Get:45 http://ftpmaster.internal/ubuntu questing/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 417s Get:46 http://ftpmaster.internal/ubuntu questing/universe armhf python3-reportlab all 4.3.1-1 [1137 kB] 417s Get:47 http://ftpmaster.internal/ubuntu questing/main armhf xml-core all 0.19 [20.3 kB] 417s Get:48 http://ftpmaster.internal/ubuntu questing/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 417s Get:49 http://ftpmaster.internal/ubuntu questing/universe armhf python3-biopython armhf 1.85+dfsg-2build1 [1692 kB] 417s Get:50 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pysam armhf 0.23.0+ds-1build1 [3569 kB] 418s Get:51 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pybedtools armhf 0.10.0-4build1 [12.2 MB] 418s Get:52 http://ftpmaster.internal/ubuntu questing/main armhf python3-pytz all 2025.1-3 [162 kB] 418s Get:53 http://ftpmaster.internal/ubuntu questing/main armhf python3-tz all 2025.1-3 [1866 B] 418s Get:54 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-8build1 [4877 kB] 418s Get:55 http://ftpmaster.internal/ubuntu questing/universe armhf python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 418s Get:56 http://ftpmaster.internal/ubuntu questing/universe armhf python3-mirtop all 0.4.28-3 [61.7 kB] 419s Fetched 50.6 MB in 2s (21.5 MB/s) 419s Selecting previously unselected package python3-numpy-dev:armhf. 419s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63951 files and directories currently installed.) 419s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_armhf.deb ... 419s Unpacking python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 419s Selecting previously unselected package libblas3:armhf. 419s Preparing to unpack .../01-libblas3_3.12.1-2_armhf.deb ... 419s Unpacking libblas3:armhf (3.12.1-2) ... 419s Selecting previously unselected package libgfortran5:armhf. 419s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_armhf.deb ... 419s Unpacking libgfortran5:armhf (15-20250404-0ubuntu1) ... 419s Selecting previously unselected package liblapack3:armhf. 419s Preparing to unpack .../03-liblapack3_3.12.1-2_armhf.deb ... 419s Unpacking liblapack3:armhf (3.12.1-2) ... 419s Selecting previously unselected package python3-numpy. 419s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_armhf.deb ... 419s Unpacking python3-numpy (1:2.2.3+ds-5) ... 420s Selecting previously unselected package sgml-base. 420s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 420s Unpacking sgml-base (1.31) ... 420s Selecting previously unselected package fonts-dejavu-mono. 420s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 420s Unpacking fonts-dejavu-mono (2.37-8) ... 420s Selecting previously unselected package fonts-dejavu-core. 420s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 420s Unpacking fonts-dejavu-core (2.37-8) ... 420s Selecting previously unselected package libfontenc1:armhf. 420s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 420s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 420s Selecting previously unselected package libfreetype6:armhf. 420s Preparing to unpack .../09-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 420s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 420s Selecting previously unselected package x11-common. 420s Preparing to unpack .../10-x11-common_1%3a7.7+23ubuntu4_all.deb ... 420s Unpacking x11-common (1:7.7+23ubuntu4) ... 420s Selecting previously unselected package xfonts-encodings. 420s Preparing to unpack .../11-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 420s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 420s Selecting previously unselected package xfonts-utils. 420s Preparing to unpack .../12-xfonts-utils_1%3a7.7+7_armhf.deb ... 420s Unpacking xfonts-utils (1:7.7+7) ... 420s Selecting previously unselected package fonts-urw-base35. 420s Preparing to unpack .../13-fonts-urw-base35_20200910-8_all.deb ... 420s Unpacking fonts-urw-base35 (20200910-8) ... 420s Selecting previously unselected package fontconfig-config. 420s Preparing to unpack .../14-fontconfig-config_2.15.0-2.2ubuntu1_armhf.deb ... 421s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 421s Selecting previously unselected package libfontconfig1:armhf. 421s Preparing to unpack .../15-libfontconfig1_2.15.0-2.2ubuntu1_armhf.deb ... 421s Unpacking libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 421s Selecting previously unselected package libpixman-1-0:armhf. 421s Preparing to unpack .../16-libpixman-1-0_0.44.0-3_armhf.deb ... 421s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 421s Selecting previously unselected package libxcb-render0:armhf. 421s Preparing to unpack .../17-libxcb-render0_1.17.0-2_armhf.deb ... 421s Unpacking libxcb-render0:armhf (1.17.0-2) ... 421s Selecting previously unselected package libxcb-shm0:armhf. 421s Preparing to unpack .../18-libxcb-shm0_1.17.0-2_armhf.deb ... 421s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 421s Selecting previously unselected package libxrender1:armhf. 421s Preparing to unpack .../19-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 421s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 421s Selecting previously unselected package libcairo2:armhf. 421s Preparing to unpack .../20-libcairo2_1.18.4-1_armhf.deb ... 421s Unpacking libcairo2:armhf (1.18.4-1) ... 421s Selecting previously unselected package libdeflate0:armhf. 421s Preparing to unpack .../21-libdeflate0_1.23-1_armhf.deb ... 421s Unpacking libdeflate0:armhf (1.23-1) ... 421s Selecting previously unselected package libgomp1:armhf. 421s Preparing to unpack .../22-libgomp1_15-20250404-0ubuntu1_armhf.deb ... 421s Unpacking libgomp1:armhf (15-20250404-0ubuntu1) ... 421s Selecting previously unselected package libgraphite2-3:armhf. 421s Preparing to unpack .../23-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 421s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 421s Selecting previously unselected package libharfbuzz0b:armhf. 421s Preparing to unpack .../24-libharfbuzz0b_10.2.0-1_armhf.deb ... 421s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 421s Selecting previously unselected package libhtscodecs2:armhf. 421s Preparing to unpack .../25-libhtscodecs2_1.6.1-2_armhf.deb ... 421s Unpacking libhtscodecs2:armhf (1.6.1-2) ... 421s Selecting previously unselected package libhts3t64:armhf. 421s Preparing to unpack .../26-libhts3t64_1.21+ds-1_armhf.deb ... 421s Unpacking libhts3t64:armhf (1.21+ds-1) ... 421s Selecting previously unselected package libimagequant0:armhf. 421s Preparing to unpack .../27-libimagequant0_2.18.0-1build1_armhf.deb ... 421s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 421s Selecting previously unselected package libjpeg-turbo8:armhf. 421s Preparing to unpack .../28-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 421s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 422s Selecting previously unselected package libjpeg8:armhf. 422s Preparing to unpack .../29-libjpeg8_8c-2ubuntu11_armhf.deb ... 422s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 422s Selecting previously unselected package liblcms2-2:armhf. 422s Preparing to unpack .../30-liblcms2-2_2.16-2_armhf.deb ... 422s Unpacking liblcms2-2:armhf (2.16-2) ... 422s Selecting previously unselected package liblerc4:armhf. 422s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 422s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 422s Selecting previously unselected package libraqm0:armhf. 422s Preparing to unpack .../32-libraqm0_0.10.2-1_armhf.deb ... 422s Unpacking libraqm0:armhf (0.10.2-1) ... 422s Selecting previously unselected package libsharpyuv0:armhf. 422s Preparing to unpack .../33-libsharpyuv0_1.5.0-0.1_armhf.deb ... 422s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 422s Selecting previously unselected package libjbig0:armhf. 422s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 422s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 422s Selecting previously unselected package libwebp7:armhf. 422s Preparing to unpack .../35-libwebp7_1.5.0-0.1_armhf.deb ... 422s Unpacking libwebp7:armhf (1.5.0-0.1) ... 422s Selecting previously unselected package libtiff6:armhf. 422s Preparing to unpack .../36-libtiff6_4.7.0-3ubuntu1_armhf.deb ... 422s Unpacking libtiff6:armhf (4.7.0-3ubuntu1) ... 422s Selecting previously unselected package libwebpdemux2:armhf. 422s Preparing to unpack .../37-libwebpdemux2_1.5.0-0.1_armhf.deb ... 422s Unpacking libwebpdemux2:armhf (1.5.0-0.1) ... 422s Selecting previously unselected package libwebpmux3:armhf. 422s Preparing to unpack .../38-libwebpmux3_1.5.0-0.1_armhf.deb ... 422s Unpacking libwebpmux3:armhf (1.5.0-0.1) ... 422s Selecting previously unselected package python3-all. 422s Preparing to unpack .../39-python3-all_3.13.3-1_armhf.deb ... 422s Unpacking python3-all (3.13.3-1) ... 422s Selecting previously unselected package libopenjp2-7:armhf. 422s Preparing to unpack .../40-libopenjp2-7_2.5.3-2_armhf.deb ... 422s Unpacking libopenjp2-7:armhf (2.5.3-2) ... 422s Selecting previously unselected package python3-pil:armhf. 422s Preparing to unpack .../41-python3-pil_11.1.0-5build1_armhf.deb ... 422s Unpacking python3-pil:armhf (11.1.0-5build1) ... 422s Selecting previously unselected package python3-cairo. 422s Preparing to unpack .../42-python3-cairo_1.27.0-2_armhf.deb ... 422s Unpacking python3-cairo (1.27.0-2) ... 422s Selecting previously unselected package python3-freetype. 422s Preparing to unpack .../43-python3-freetype_2.5.1-1_all.deb ... 422s Unpacking python3-freetype (2.5.1-1) ... 422s Selecting previously unselected package python3-rlpycairo. 422s Preparing to unpack .../44-python3-rlpycairo_0.3.0-3_all.deb ... 422s Unpacking python3-rlpycairo (0.3.0-3) ... 422s Selecting previously unselected package python3-reportlab. 422s Preparing to unpack .../45-python3-reportlab_4.3.1-1_all.deb ... 422s Unpacking python3-reportlab (4.3.1-1) ... 422s Selecting previously unselected package xml-core. 423s Preparing to unpack .../46-xml-core_0.19_all.deb ... 423s Unpacking xml-core (0.19) ... 423s Selecting previously unselected package w3c-sgml-lib. 423s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... 423s Unpacking w3c-sgml-lib (1.3-3) ... 423s Selecting previously unselected package python3-biopython. 423s Preparing to unpack .../48-python3-biopython_1.85+dfsg-2build1_armhf.deb ... 423s Unpacking python3-biopython (1.85+dfsg-2build1) ... 423s Selecting previously unselected package python3-pysam. 423s Preparing to unpack .../49-python3-pysam_0.23.0+ds-1build1_armhf.deb ... 423s Unpacking python3-pysam (0.23.0+ds-1build1) ... 423s Selecting previously unselected package python3-pybedtools. 423s Preparing to unpack .../50-python3-pybedtools_0.10.0-4build1_armhf.deb ... 423s Unpacking python3-pybedtools (0.10.0-4build1) ... 423s Selecting previously unselected package python3-pytz. 423s Preparing to unpack .../51-python3-pytz_2025.1-3_all.deb ... 423s Unpacking python3-pytz (2025.1-3) ... 423s Selecting previously unselected package python3-tz. 423s Preparing to unpack .../52-python3-tz_2025.1-3_all.deb ... 423s Unpacking python3-tz (2025.1-3) ... 423s Selecting previously unselected package python3-pandas-lib:armhf. 423s Preparing to unpack .../53-python3-pandas-lib_2.2.3+dfsg-8build1_armhf.deb ... 423s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-8build1) ... 424s Selecting previously unselected package python3-pandas. 424s Preparing to unpack .../54-python3-pandas_2.2.3+dfsg-8build1_all.deb ... 424s Unpacking python3-pandas (2.2.3+dfsg-8build1) ... 424s Selecting previously unselected package python3-mirtop. 424s Preparing to unpack .../55-python3-mirtop_0.4.28-3_all.deb ... 424s Unpacking python3-mirtop (0.4.28-3) ... 424s Setting up libhtscodecs2:armhf (1.6.1-2) ... 424s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 424s Setting up liblcms2-2:armhf (2.16-2) ... 424s Setting up libpixman-1-0:armhf (0.44.0-3) ... 424s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 424s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 424s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 424s Setting up libxcb-render0:armhf (1.17.0-2) ... 424s Setting up x11-common (1:7.7+23ubuntu4) ... 425s Setting up libdeflate0:armhf (1.23-1) ... 425s Setting up python3-all (3.13.3-1) ... 425s Setting up python3-pytz (2025.1-3) ... 425s Setting up libxcb-shm0:armhf (1.17.0-2) ... 425s Setting up libgomp1:armhf (15-20250404-0ubuntu1) ... 425s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 425s Setting up python3-tz (2025.1-3) ... 425s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 425s Setting up libblas3:armhf (3.12.1-2) ... 425s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 425s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 425s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 425s Setting up libimagequant0:armhf (2.18.0-1build1) ... 425s Setting up fonts-dejavu-mono (2.37-8) ... 425s Setting up python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 425s Setting up fonts-dejavu-core (2.37-8) ... 425s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 425s Setting up libgfortran5:armhf (15-20250404-0ubuntu1) ... 425s Setting up libwebp7:armhf (1.5.0-0.1) ... 425s Setting up libhts3t64:armhf (1.21+ds-1) ... 425s Setting up libopenjp2-7:armhf (2.5.3-2) ... 425s Setting up libharfbuzz0b:armhf (10.2.0-1) ... 425s Setting up sgml-base (1.31) ... 425s Setting up libwebpmux3:armhf (1.5.0-0.1) ... 425s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 425s Setting up liblapack3:armhf (3.12.1-2) ... 425s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 425s Setting up python3-pysam (0.23.0+ds-1build1) ... 425s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 425s Setting up libwebpdemux2:armhf (1.5.0-0.1) ... 425s Setting up python3-freetype (2.5.1-1) ... 426s Setting up xfonts-utils (1:7.7+7) ... 426s Setting up libraqm0:armhf (0.10.2-1) ... 426s Setting up python3-numpy (1:2.2.3+ds-5) ... 428s Setting up libtiff6:armhf (4.7.0-3ubuntu1) ... 428s Setting up xml-core (0.19) ... 428s Setting up libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 428s Setting up python3-pybedtools (0.10.0-4build1) ... 429s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-8build1) ... 429s Setting up fonts-urw-base35 (20200910-8) ... 429s Setting up libcairo2:armhf (1.18.4-1) ... 429s Setting up python3-pil:armhf (11.1.0-5build1) ... 429s Setting up python3-pandas (2.2.3+dfsg-8build1) ... 435s Setting up python3-cairo (1.27.0-2) ... 435s Setting up python3-rlpycairo (0.3.0-3) ... 436s Setting up python3-reportlab (4.3.1-1) ... 437s Processing triggers for libc-bin (2.41-6ubuntu1) ... 437s Processing triggers for man-db (2.13.0-1) ... 437s Processing triggers for sgml-base (1.31) ... 437s Setting up w3c-sgml-lib (1.3-3) ... 472s Setting up python3-biopython (1.85+dfsg-2build1) ... 473s Setting up python3-mirtop (0.4.28-3) ... 487s autopkgtest [03:16:54]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import mirtop; print(mirtop)" ; done 487s autopkgtest [03:16:54]: test autodep8-python3: [----------------------- 489s Testing with python3.13: 489s 490s autopkgtest [03:16:57]: test autodep8-python3: -----------------------] 494s autodep8-python3 PASS (superficial) 494s autopkgtest [03:17:01]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 498s autopkgtest [03:17:05]: @@@@@@@@@@@@@@@@@@@@ summary 498s run-unit-test PASS 498s autodep8-python3 PASS (superficial)