0s autopkgtest [11:47:59]: starting date and time: 2025-05-03 11:47:59+0000 0s autopkgtest [11:47:59]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [11:47:59]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.l7tmok8j/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:libzstd --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libzstd/1.5.7+dfsg-1 -- lxd -r lxd-armhf-10.145.243.107 lxd-armhf-10.145.243.107:autopkgtest/ubuntu/questing/armhf 19s autopkgtest [11:48:18]: testbed dpkg architecture: armhf 21s autopkgtest [11:48:20]: testbed apt version: 3.0.0 25s autopkgtest [11:48:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 27s autopkgtest [11:48:26]: testbed release detected to be: None 34s autopkgtest [11:48:33]: updating testbed package index (apt update) 36s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 36s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 36s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 36s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 36s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [155 kB] 36s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1655 kB] 36s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.6 kB] 36s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [170 kB] 36s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1235 kB] 36s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.7 kB] 36s Get:11 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 37s Get:12 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 37s Get:13 http://ftpmaster.internal/ubuntu questing/main Sources [1398 kB] 37s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 37s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [15.0 MB] 37s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 41s Fetched 43.1 MB in 5s (8198 kB/s) 42s Reading package lists... 48s autopkgtest [11:48:47]: upgrading testbed (apt dist-upgrade and autopurge) 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 50s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 50s Starting 2 pkgProblemResolver with broken count: 0 50s Done 51s Entering ResolveByKeep 51s 51s Calculating upgrade... 52s The following packages will be upgraded: 52s base-files debianutils distro-info-data dpkg dpkg-dev ed fwupd htop 52s libdpkg-perl libftdi1-2 libfwupd3 libnftnl11 libnpth0t64 libnvme1t64 52s libsensors-config libsensors5 liburcu8t64 libzstd1 motd-news-config nano 52s python3-lazr.restfulclient ubuntu-pro-client ubuntu-pro-client-l10n usb.ids 52s zstd 52s 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s Need to get 6620 kB of archives. 52s After this operation, 3533 kB disk space will be freed. 52s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 52s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 52s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf debianutils armhf 5.22 [92.2 kB] 52s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 53s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main armhf libzstd1 armhf 1.5.7+dfsg-1 [271 kB] 53s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 53s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 53s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 53s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 53s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 53s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf libnftnl11 armhf 1.2.9-1 [53.3 kB] 53s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 53s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 53s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 53s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 53s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 53s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 53s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 53s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 53s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 53s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 53s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 53s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 53s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 53s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main armhf zstd armhf 1.5.7+dfsg-1 [722 kB] 53s Fetched 6620 kB in 1s (7435 kB/s) 53s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 53s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 53s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 53s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 54s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 54s Setting up base-files (13.7ubuntu1) ... 54s Installing new version of config file /etc/issue ... 54s Installing new version of config file /etc/issue.net ... 54s Installing new version of config file /etc/lsb-release ... 54s motd-news.service is a disabled or a static unit not running, not starting it. 54s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 54s Preparing to unpack .../debianutils_5.22_armhf.deb ... 54s Unpacking debianutils (5.22) over (5.21) ... 54s Setting up debianutils (5.22) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 55s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 55s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 55s Setting up dpkg (1.22.18ubuntu3) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 55s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_armhf.deb ... 55s Unpacking libzstd1:armhf (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 55s Setting up libzstd1:armhf (1.5.7+dfsg-1) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 55s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 55s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 55s Setting up libnpth0t64:armhf (1.8-3) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 55s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 55s Unpacking distro-info-data (0.64) over (0.63) ... 55s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 55s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 55s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 55s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 56s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 56s Unpacking ed (1.21.1-1) over (1.21-1) ... 56s Preparing to unpack .../04-libnftnl11_1.2.9-1_armhf.deb ... 56s Unpacking libnftnl11:armhf (1.2.9-1) over (1.2.8-1) ... 56s Preparing to unpack .../05-libsensors-config_1%3a3.6.2-2_all.deb ... 56s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 56s Preparing to unpack .../06-libsensors5_1%3a3.6.2-2_armhf.deb ... 56s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 56s Preparing to unpack .../07-liburcu8t64_0.15.2-2_armhf.deb ... 56s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 56s Preparing to unpack .../08-nano_8.4-1_armhf.deb ... 56s Unpacking nano (8.4-1) over (8.3-1) ... 56s Preparing to unpack .../09-usb.ids_2025.04.01-1_all.deb ... 56s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 56s Preparing to unpack .../10-dpkg-dev_1.22.18ubuntu3_all.deb ... 56s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 56s Preparing to unpack .../11-libdpkg-perl_1.22.18ubuntu3_all.deb ... 56s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 56s Preparing to unpack .../12-fwupd_2.0.8-3_armhf.deb ... 56s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 56s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 56s Preparing to unpack .../13-libfwupd3_2.0.8-3_armhf.deb ... 56s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 56s Preparing to unpack .../14-htop_3.4.1-4_armhf.deb ... 56s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 56s Preparing to unpack .../15-libftdi1-2_1.5-10_armhf.deb ... 56s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 56s Preparing to unpack .../16-libnvme1t64_1.13-2_armhf.deb ... 56s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 56s Preparing to unpack .../17-python3-lazr.restfulclient_0.14.6-3_all.deb ... 56s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 57s Preparing to unpack .../18-zstd_1.5.7+dfsg-1_armhf.deb ... 57s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 57s Setting up motd-news-config (13.7ubuntu1) ... 57s Setting up liburcu8t64:armhf (0.15.2-2) ... 57s Setting up distro-info-data (0.64) ... 57s Setting up htop (3.4.1-4) ... 57s Setting up libsensors-config (1:3.6.2-2) ... 57s Installing new version of config file /etc/sensors3.conf ... 57s Setting up libnftnl11:armhf (1.2.9-1) ... 57s Setting up libfwupd3:armhf (2.0.8-3) ... 57s Setting up libftdi1-2:armhf (1.5-10) ... 57s Setting up libnvme1t64 (1.13-2) ... 57s Setting up ed (1.21.1-1) ... 57s Setting up usb.ids (2025.04.01-1) ... 57s Setting up libsensors5:armhf (1:3.6.2-2) ... 57s Setting up libdpkg-perl (1.22.18ubuntu3) ... 57s Setting up nano (8.4-1) ... 57s Installing new version of config file /etc/nanorc ... 57s Setting up python3-lazr.restfulclient (0.14.6-3) ... 57s Setting up ubuntu-pro-client (35.1ubuntu0) ... 57s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 57s 57s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 57s 57s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 57s 58s Setting up zstd (1.5.7+dfsg-1) ... 58s Setting up fwupd (2.0.8-3) ... 59s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 59s fwupd.service is a disabled or a static unit not running, not starting it. 59s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 59s Setting up dpkg-dev (1.22.18ubuntu3) ... 59s Processing triggers for dbus (1.16.2-2ubuntu1) ... 59s Processing triggers for install-info (7.1.1-1) ... 59s Processing triggers for libc-bin (2.41-6ubuntu1) ... 59s Processing triggers for man-db (2.13.0-1) ... 61s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 61s Processing triggers for initramfs-tools (0.147ubuntu1) ... 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 64s Starting pkgProblemResolver with broken count: 0 64s Starting 2 pkgProblemResolver with broken count: 0 64s Done 64s Solving dependencies... 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s autopkgtest [11:49:06]: rebooting testbed after setup commands that affected boot 106s autopkgtest [11:49:45]: testbed running kernel: Linux 6.8.0-58-generic #60~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 28 14:48:37 UTC 2 130s autopkgtest [11:50:09]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 168s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 168s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 168s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 168s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 168s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 168s gpgv: Can't check signature: No public key 168s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 173s autopkgtest [11:50:52]: testing package lammps version 20240207+dfsg-3build3 176s autopkgtest [11:50:55]: build not needed 194s autopkgtest [11:51:13]: test crack: preparing testbed 196s Reading package lists... 196s Building dependency tree... 196s Reading state information... 197s Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 197s The following NEW packages will be installed: 197s fontconfig-config fonts-dejavu-core fonts-dejavu-mono hwloc-nox lammps 197s lammps-data libaec0 libblas3 libcairo2 libdeflate0 libdouble-conversion3 197s libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 197s libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 197s libgomp1 libhdf5-310 libhdf5-hl-310 libhwloc15 libjbig0 libjpeg-turbo8 197s libjpeg8 libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 liblerc4 197s libllvm19 libmpich12 libnetcdf22 libogg0 libopengl0 libpixman-1-0 libproj25 197s libpython3.13 libsharpyuv0 libslurm42t64 libsz2 libtbb12 libtbbbind-2-5 197s libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 197s libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 197s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 198s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxrender1 libxshmfence1 198s libxss1 libxxf86vm1 mesa-libgallium mpi-default-bin mpich proj-data 198s x11-common 198s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 198s Need to get 101 MB of archives. 198s After this operation, 389 MB of additional disk space will be used. 198s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 198s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 198s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig-config armhf 2.15.0-2.2ubuntu1 [37.9 kB] 198s Get:4 http://ftpmaster.internal/ubuntu questing/universe armhf lammps-data all 20240207+dfsg-3build3 [9732 kB] 199s Get:5 http://ftpmaster.internal/ubuntu questing/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 199s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf libblas3 armhf 3.12.1-2 [132 kB] 199s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 199s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf libfontconfig1 armhf 2.15.0-2.2ubuntu1 [114 kB] 199s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 199s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 199s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 199s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 199s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf libcairo2 armhf 1.18.4-1 [483 kB] 199s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 199s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf libdouble-conversion3 armhf 3.3.1-1 [39.1 kB] 199s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf libgomp1 armhf 15-20250404-0ubuntu1 [128 kB] 199s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build1 [369 kB] 199s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libwayland-server0 armhf 1.23.1-3 [30.3 kB] 199s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libllvm19 armhf 1:19.1.7-3ubuntu1 [27.8 MB] 199s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 199s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 199s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 199s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 199s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 199s Get:25 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 199s Get:26 http://ftpmaster.internal/ubuntu questing/main armhf libxshmfence1 armhf 1.3.3-1 [4948 B] 199s Get:27 http://ftpmaster.internal/ubuntu questing/main armhf mesa-libgallium armhf 25.0.3-1ubuntu2 [8260 kB] 200s Get:28 http://ftpmaster.internal/ubuntu questing/main armhf libgbm1 armhf 25.0.3-1ubuntu2 [29.0 kB] 200s Get:29 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran5 armhf 15-20250404-0ubuntu1 [331 kB] 200s Get:30 http://ftpmaster.internal/ubuntu questing/main armhf libvulkan1 armhf 1.4.304.0-1 [127 kB] 200s Get:31 http://ftpmaster.internal/ubuntu questing/main armhf libgl1-mesa-dri armhf 25.0.3-1ubuntu2 [32.0 kB] 200s Get:32 http://ftpmaster.internal/ubuntu questing/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 200s Get:33 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 200s Get:34 http://ftpmaster.internal/ubuntu questing/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 200s Get:35 http://ftpmaster.internal/ubuntu questing/main armhf libglx-mesa0 armhf 25.0.3-1ubuntu2 [120 kB] 200s Get:36 http://ftpmaster.internal/ubuntu questing/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 200s Get:37 http://ftpmaster.internal/ubuntu questing/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 200s Get:38 http://ftpmaster.internal/ubuntu questing/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB] 200s Get:39 http://ftpmaster.internal/ubuntu questing/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 200s Get:40 http://ftpmaster.internal/ubuntu questing/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 200s Get:41 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 200s Get:42 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB] 200s Get:43 http://ftpmaster.internal/ubuntu questing/universe armhf libhwloc15 armhf 2.12.0-1 [147 kB] 200s Get:44 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 200s Get:45 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 200s Get:46 http://ftpmaster.internal/ubuntu questing/main armhf libjsoncpp26 armhf 1.9.6-3 [75.5 kB] 200s Get:47 http://ftpmaster.internal/ubuntu questing/universe armhf libkim-api2 armhf 2.3.0-1ubuntu1 [566 kB] 200s Get:48 http://ftpmaster.internal/ubuntu questing/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 200s Get:49 http://ftpmaster.internal/ubuntu questing/universe armhf libmpich12 armhf 4.2.1-5 [1574 kB] 200s Get:50 http://ftpmaster.internal/ubuntu questing/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB] 200s Get:51 http://ftpmaster.internal/ubuntu questing/main armhf libpython3.13 armhf 3.13.3-1 [2082 kB] 200s Get:52 http://ftpmaster.internal/ubuntu questing/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 200s Get:53 http://ftpmaster.internal/ubuntu questing/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB] 200s Get:54 http://ftpmaster.internal/ubuntu questing/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 200s Get:55 http://ftpmaster.internal/ubuntu questing/universe armhf proj-data all 9.5.1-1 [7924 kB] 200s Get:56 http://ftpmaster.internal/ubuntu questing/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 200s Get:57 http://ftpmaster.internal/ubuntu questing/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 200s Get:58 http://ftpmaster.internal/ubuntu questing/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 200s Get:59 http://ftpmaster.internal/ubuntu questing/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 200s Get:60 http://ftpmaster.internal/ubuntu questing/main armhf libtiff6 armhf 4.7.0-3ubuntu1 [184 kB] 200s Get:61 http://ftpmaster.internal/ubuntu questing/universe armhf libproj25 armhf 9.5.1-1 [1331 kB] 200s Get:62 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbbind-2-5 armhf 2022.0.0-2 [13.8 kB] 200s Get:63 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbmalloc2 armhf 2022.0.0-2 [47.0 kB] 200s Get:64 http://ftpmaster.internal/ubuntu questing/universe armhf libtbb12 armhf 2022.0.0-2 [80.8 kB] 200s Get:65 http://ftpmaster.internal/ubuntu questing/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 200s Get:66 http://ftpmaster.internal/ubuntu questing/main armhf libtheoradec1 armhf 1.2.0~alpha1+dfsg-6 [45.8 kB] 200s Get:67 http://ftpmaster.internal/ubuntu questing/main armhf libtheoraenc1 armhf 1.2.0~alpha1+dfsg-6 [91.8 kB] 200s Get:68 http://ftpmaster.internal/ubuntu questing/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 200s Get:69 http://ftpmaster.internal/ubuntu questing/main armhf x11-common all 1:7.7+23ubuntu4 [21.8 kB] 200s Get:70 http://ftpmaster.internal/ubuntu questing/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 200s Get:71 http://ftpmaster.internal/ubuntu questing/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 200s Get:72 http://ftpmaster.internal/ubuntu questing/universe armhf libvtk9.3 armhf 9.3.0+dfsg1-4ubuntu1 [21.9 MB] 201s Get:73 http://ftpmaster.internal/ubuntu questing/universe armhf liblammps0t64 armhf 20240207+dfsg-3build3 [6801 kB] 201s Get:74 http://ftpmaster.internal/ubuntu questing/universe armhf libslurm42t64 armhf 24.11.3-2 [769 kB] 201s Get:75 http://ftpmaster.internal/ubuntu questing/universe armhf hwloc-nox armhf 2.12.0-1 [213 kB] 201s Get:76 http://ftpmaster.internal/ubuntu questing/universe armhf mpich armhf 4.2.1-5 [214 kB] 201s Get:77 http://ftpmaster.internal/ubuntu questing/universe armhf mpi-default-bin armhf 1.18 [2504 B] 201s Get:78 http://ftpmaster.internal/ubuntu questing/universe armhf lammps armhf 20240207+dfsg-3build3 [14.7 kB] 202s Fetched 101 MB in 4s (27.9 MB/s) 202s Selecting previously unselected package fonts-dejavu-mono. 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63951 files and directories currently installed.) 202s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 202s Unpacking fonts-dejavu-mono (2.37-8) ... 202s Selecting previously unselected package fonts-dejavu-core. 202s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 202s Unpacking fonts-dejavu-core (2.37-8) ... 202s Selecting previously unselected package fontconfig-config. 202s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_armhf.deb ... 202s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 202s Selecting previously unselected package lammps-data. 202s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 202s Unpacking lammps-data (20240207+dfsg-3build3) ... 202s Selecting previously unselected package libaec0:armhf. 202s Preparing to unpack .../04-libaec0_1.1.3-1_armhf.deb ... 202s Unpacking libaec0:armhf (1.1.3-1) ... 202s Selecting previously unselected package libblas3:armhf. 202s Preparing to unpack .../05-libblas3_3.12.1-2_armhf.deb ... 202s Unpacking libblas3:armhf (3.12.1-2) ... 202s Selecting previously unselected package libfreetype6:armhf. 202s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 202s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 202s Selecting previously unselected package libfontconfig1:armhf. 202s Preparing to unpack .../07-libfontconfig1_2.15.0-2.2ubuntu1_armhf.deb ... 202s Unpacking libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 202s Selecting previously unselected package libpixman-1-0:armhf. 202s Preparing to unpack .../08-libpixman-1-0_0.44.0-3_armhf.deb ... 202s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 202s Selecting previously unselected package libxcb-render0:armhf. 202s Preparing to unpack .../09-libxcb-render0_1.17.0-2_armhf.deb ... 202s Unpacking libxcb-render0:armhf (1.17.0-2) ... 203s Selecting previously unselected package libxcb-shm0:armhf. 203s Preparing to unpack .../10-libxcb-shm0_1.17.0-2_armhf.deb ... 203s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 203s Selecting previously unselected package libxrender1:armhf. 203s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 203s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 203s Selecting previously unselected package libcairo2:armhf. 203s Preparing to unpack .../12-libcairo2_1.18.4-1_armhf.deb ... 203s Unpacking libcairo2:armhf (1.18.4-1) ... 203s Selecting previously unselected package libdeflate0:armhf. 203s Preparing to unpack .../13-libdeflate0_1.23-2_armhf.deb ... 203s Unpacking libdeflate0:armhf (1.23-2) ... 203s Selecting previously unselected package libdouble-conversion3:armhf. 203s Preparing to unpack .../14-libdouble-conversion3_3.3.1-1_armhf.deb ... 203s Unpacking libdouble-conversion3:armhf (3.3.1-1) ... 203s Selecting previously unselected package libgomp1:armhf. 203s Preparing to unpack .../15-libgomp1_15-20250404-0ubuntu1_armhf.deb ... 203s Unpacking libgomp1:armhf (15-20250404-0ubuntu1) ... 203s Selecting previously unselected package libfftw3-double3:armhf. 203s Preparing to unpack .../16-libfftw3-double3_3.3.10-2fakesync1build1_armhf.deb ... 203s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 203s Selecting previously unselected package libwayland-server0:armhf. 203s Preparing to unpack .../17-libwayland-server0_1.23.1-3_armhf.deb ... 203s Unpacking libwayland-server0:armhf (1.23.1-3) ... 203s Selecting previously unselected package libllvm19:armhf. 203s Preparing to unpack .../18-libllvm19_1%3a19.1.7-3ubuntu1_armhf.deb ... 203s Unpacking libllvm19:armhf (1:19.1.7-3ubuntu1) ... 204s Selecting previously unselected package libx11-xcb1:armhf. 204s Preparing to unpack .../19-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 204s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 204s Selecting previously unselected package libxcb-dri3-0:armhf. 204s Preparing to unpack .../20-libxcb-dri3-0_1.17.0-2_armhf.deb ... 204s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 204s Selecting previously unselected package libxcb-present0:armhf. 204s Preparing to unpack .../21-libxcb-present0_1.17.0-2_armhf.deb ... 204s Unpacking libxcb-present0:armhf (1.17.0-2) ... 204s Selecting previously unselected package libxcb-randr0:armhf. 204s Preparing to unpack .../22-libxcb-randr0_1.17.0-2_armhf.deb ... 204s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 204s Selecting previously unselected package libxcb-sync1:armhf. 204s Preparing to unpack .../23-libxcb-sync1_1.17.0-2_armhf.deb ... 204s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 204s Selecting previously unselected package libxcb-xfixes0:armhf. 204s Preparing to unpack .../24-libxcb-xfixes0_1.17.0-2_armhf.deb ... 204s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 204s Selecting previously unselected package libxshmfence1:armhf. 204s Preparing to unpack .../25-libxshmfence1_1.3.3-1_armhf.deb ... 204s Unpacking libxshmfence1:armhf (1.3.3-1) ... 204s Selecting previously unselected package mesa-libgallium:armhf. 204s Preparing to unpack .../26-mesa-libgallium_25.0.3-1ubuntu2_armhf.deb ... 204s Unpacking mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 204s Selecting previously unselected package libgbm1:armhf. 204s Preparing to unpack .../27-libgbm1_25.0.3-1ubuntu2_armhf.deb ... 204s Unpacking libgbm1:armhf (25.0.3-1ubuntu2) ... 204s Selecting previously unselected package libgfortran5:armhf. 204s Preparing to unpack .../28-libgfortran5_15-20250404-0ubuntu1_armhf.deb ... 204s Unpacking libgfortran5:armhf (15-20250404-0ubuntu1) ... 204s Selecting previously unselected package libvulkan1:armhf. 204s Preparing to unpack .../29-libvulkan1_1.4.304.0-1_armhf.deb ... 204s Unpacking libvulkan1:armhf (1.4.304.0-1) ... 204s Selecting previously unselected package libgl1-mesa-dri:armhf. 204s Preparing to unpack .../30-libgl1-mesa-dri_25.0.3-1ubuntu2_armhf.deb ... 204s Unpacking libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 204s Selecting previously unselected package libglvnd0:armhf. 204s Preparing to unpack .../31-libglvnd0_1.7.0-1build1_armhf.deb ... 204s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 204s Selecting previously unselected package libxcb-glx0:armhf. 204s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_armhf.deb ... 204s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 204s Selecting previously unselected package libxxf86vm1:armhf. 204s Preparing to unpack .../33-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 204s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 204s Selecting previously unselected package libglx-mesa0:armhf. 204s Preparing to unpack .../34-libglx-mesa0_25.0.3-1ubuntu2_armhf.deb ... 204s Unpacking libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 204s Selecting previously unselected package libglx0:armhf. 204s Preparing to unpack .../35-libglx0_1.7.0-1build1_armhf.deb ... 204s Unpacking libglx0:armhf (1.7.0-1build1) ... 204s Selecting previously unselected package libgl1:armhf. 204s Preparing to unpack .../36-libgl1_1.7.0-1build1_armhf.deb ... 204s Unpacking libgl1:armhf (1.7.0-1build1) ... 204s Selecting previously unselected package libgl2ps1.4. 204s Preparing to unpack .../37-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ... 204s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 204s Selecting previously unselected package libglew2.2:armhf. 204s Preparing to unpack .../38-libglew2.2_2.2.0-4build1_armhf.deb ... 204s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 204s Selecting previously unselected package libsz2:armhf. 204s Preparing to unpack .../39-libsz2_1.1.3-1_armhf.deb ... 204s Unpacking libsz2:armhf (1.1.3-1) ... 204s Selecting previously unselected package libhdf5-310:armhf. 204s Preparing to unpack .../40-libhdf5-310_1.14.5+repack-3_armhf.deb ... 204s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 204s Selecting previously unselected package libhdf5-hl-310:armhf. 205s Preparing to unpack .../41-libhdf5-hl-310_1.14.5+repack-3_armhf.deb ... 205s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3) ... 205s Selecting previously unselected package libhwloc15:armhf. 205s Preparing to unpack .../42-libhwloc15_2.12.0-1_armhf.deb ... 205s Unpacking libhwloc15:armhf (2.12.0-1) ... 205s Selecting previously unselected package libjpeg-turbo8:armhf. 205s Preparing to unpack .../43-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 205s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 205s Selecting previously unselected package libjpeg8:armhf. 205s Preparing to unpack .../44-libjpeg8_8c-2ubuntu11_armhf.deb ... 205s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 205s Selecting previously unselected package libjsoncpp26:armhf. 205s Preparing to unpack .../45-libjsoncpp26_1.9.6-3_armhf.deb ... 205s Unpacking libjsoncpp26:armhf (1.9.6-3) ... 205s Selecting previously unselected package libkim-api2:armhf. 205s Preparing to unpack .../46-libkim-api2_2.3.0-1ubuntu1_armhf.deb ... 205s Unpacking libkim-api2:armhf (2.3.0-1ubuntu1) ... 205s Selecting previously unselected package liblapack3:armhf. 205s Preparing to unpack .../47-liblapack3_3.12.1-2_armhf.deb ... 205s Unpacking liblapack3:armhf (3.12.1-2) ... 205s Selecting previously unselected package libmpich12:armhf. 205s Preparing to unpack .../48-libmpich12_4.2.1-5_armhf.deb ... 205s Unpacking libmpich12:armhf (4.2.1-5) ... 205s Selecting previously unselected package libnetcdf22:armhf. 205s Preparing to unpack .../49-libnetcdf22_1%3a4.9.3-1_armhf.deb ... 205s Unpacking libnetcdf22:armhf (1:4.9.3-1) ... 205s Selecting previously unselected package libpython3.13:armhf. 205s Preparing to unpack .../50-libpython3.13_3.13.3-1_armhf.deb ... 205s Unpacking libpython3.13:armhf (3.13.3-1) ... 205s Selecting previously unselected package libvoro++1. 205s Preparing to unpack .../51-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 205s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 205s Selecting previously unselected package libogg0:armhf. 205s Preparing to unpack .../52-libogg0_1.3.5-3build1_armhf.deb ... 205s Unpacking libogg0:armhf (1.3.5-3build1) ... 205s Selecting previously unselected package libopengl0:armhf. 205s Preparing to unpack .../53-libopengl0_1.7.0-1build1_armhf.deb ... 205s Unpacking libopengl0:armhf (1.7.0-1build1) ... 205s Selecting previously unselected package proj-data. 205s Preparing to unpack .../54-proj-data_9.5.1-1_all.deb ... 205s Unpacking proj-data (9.5.1-1) ... 205s Selecting previously unselected package libjbig0:armhf. 205s Preparing to unpack .../55-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 205s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 205s Selecting previously unselected package liblerc4:armhf. 205s Preparing to unpack .../56-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 205s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 205s Selecting previously unselected package libsharpyuv0:armhf. 205s Preparing to unpack .../57-libsharpyuv0_1.5.0-0.1_armhf.deb ... 205s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 205s Selecting previously unselected package libwebp7:armhf. 205s Preparing to unpack .../58-libwebp7_1.5.0-0.1_armhf.deb ... 205s Unpacking libwebp7:armhf (1.5.0-0.1) ... 205s Selecting previously unselected package libtiff6:armhf. 205s Preparing to unpack .../59-libtiff6_4.7.0-3ubuntu1_armhf.deb ... 205s Unpacking libtiff6:armhf (4.7.0-3ubuntu1) ... 205s Selecting previously unselected package libproj25:armhf. 205s Preparing to unpack .../60-libproj25_9.5.1-1_armhf.deb ... 205s Unpacking libproj25:armhf (9.5.1-1) ... 205s Selecting previously unselected package libtbbbind-2-5:armhf. 205s Preparing to unpack .../61-libtbbbind-2-5_2022.0.0-2_armhf.deb ... 205s Unpacking libtbbbind-2-5:armhf (2022.0.0-2) ... 206s Selecting previously unselected package libtbbmalloc2:armhf. 206s Preparing to unpack .../62-libtbbmalloc2_2022.0.0-2_armhf.deb ... 206s Unpacking libtbbmalloc2:armhf (2022.0.0-2) ... 206s Selecting previously unselected package libtbb12:armhf. 206s Preparing to unpack .../63-libtbb12_2022.0.0-2_armhf.deb ... 206s Unpacking libtbb12:armhf (2022.0.0-2) ... 206s Selecting previously unselected package libtcl8.6:armhf. 206s Preparing to unpack .../64-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 206s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 206s Selecting previously unselected package libtheoradec1:armhf. 206s Preparing to unpack .../65-libtheoradec1_1.2.0~alpha1+dfsg-6_armhf.deb ... 206s Unpacking libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ... 206s Selecting previously unselected package libtheoraenc1:armhf. 206s Preparing to unpack .../66-libtheoraenc1_1.2.0~alpha1+dfsg-6_armhf.deb ... 206s Unpacking libtheoraenc1:armhf (1.2.0~alpha1+dfsg-6) ... 206s Selecting previously unselected package libxft2:armhf. 206s Preparing to unpack .../67-libxft2_2.3.6-1build1_armhf.deb ... 206s Unpacking libxft2:armhf (2.3.6-1build1) ... 206s Selecting previously unselected package x11-common. 206s Preparing to unpack .../68-x11-common_1%3a7.7+23ubuntu4_all.deb ... 206s Unpacking x11-common (1:7.7+23ubuntu4) ... 206s Selecting previously unselected package libxss1:armhf. 206s Preparing to unpack .../69-libxss1_1%3a1.2.3-1build3_armhf.deb ... 206s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 206s Selecting previously unselected package libtk8.6:armhf. 206s Preparing to unpack .../70-libtk8.6_8.6.16-1_armhf.deb ... 206s Unpacking libtk8.6:armhf (8.6.16-1) ... 206s Selecting previously unselected package libvtk9.3:armhf. 206s Preparing to unpack .../71-libvtk9.3_9.3.0+dfsg1-4ubuntu1_armhf.deb ... 206s Unpacking libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 207s Selecting previously unselected package liblammps0t64:armhf. 207s Preparing to unpack .../72-liblammps0t64_20240207+dfsg-3build3_armhf.deb ... 207s Unpacking liblammps0t64:armhf (20240207+dfsg-3build3) ... 207s Selecting previously unselected package libslurm42t64. 207s Preparing to unpack .../73-libslurm42t64_24.11.3-2_armhf.deb ... 207s Unpacking libslurm42t64 (24.11.3-2) ... 207s Selecting previously unselected package hwloc-nox. 207s Preparing to unpack .../74-hwloc-nox_2.12.0-1_armhf.deb ... 207s Unpacking hwloc-nox (2.12.0-1) ... 207s Selecting previously unselected package mpich. 207s Preparing to unpack .../75-mpich_4.2.1-5_armhf.deb ... 207s Unpacking mpich (4.2.1-5) ... 207s Selecting previously unselected package mpi-default-bin. 207s Preparing to unpack .../76-mpi-default-bin_1.18_armhf.deb ... 207s Unpacking mpi-default-bin (1.18) ... 207s Selecting previously unselected package lammps. 207s Preparing to unpack .../77-lammps_20240207+dfsg-3build3_armhf.deb ... 207s Unpacking lammps (20240207+dfsg-3build3) ... 207s Setting up libpython3.13:armhf (3.13.3-1) ... 207s Setting up libxcb-dri3-0:armhf (1.17.0-2) ... 207s Setting up libtbbmalloc2:armhf (2022.0.0-2) ... 207s Setting up libpixman-1-0:armhf (0.44.0-3) ... 207s Setting up libllvm19:armhf (1:19.1.7-3ubuntu1) ... 207s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 207s Setting up libwayland-server0:armhf (1.23.1-3) ... 207s Setting up libx11-xcb1:armhf (2:1.8.10-2) ... 207s Setting up libdouble-conversion3:armhf (3.3.1-1) ... 207s Setting up libxcb-xfixes0:armhf (1.17.0-2) ... 207s Setting up libogg0:armhf (1.3.5-3build1) ... 207s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 207s Setting up proj-data (9.5.1-1) ... 207s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 207s Setting up lammps-data (20240207+dfsg-3build3) ... 207s Setting up libxcb-render0:armhf (1.17.0-2) ... 207s Setting up libglvnd0:armhf (1.7.0-1build1) ... 207s Setting up libxcb-glx0:armhf (1.17.0-2) ... 207s Setting up x11-common (1:7.7+23ubuntu4) ... 207s Setting up libdeflate0:armhf (1.23-2) ... 207s Setting up libxcb-shm0:armhf (1.17.0-2) ... 207s Setting up libgomp1:armhf (15-20250404-0ubuntu1) ... 207s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 207s Setting up libaec0:armhf (1.1.3-1) ... 207s Setting up libopengl0:armhf (1.7.0-1build1) ... 207s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ... 207s Setting up libxcb-present0:armhf (1.17.0-2) ... 207s Setting up libtheoraenc1:armhf (1.2.0~alpha1+dfsg-6) ... 207s Setting up libblas3:armhf (3.12.1-2) ... 207s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 207s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 207s Setting up libxcb-sync1:armhf (1.17.0-2) ... 207s Setting up libjsoncpp26:armhf (1.9.6-3) ... 207s Setting up libslurm42t64 (24.11.3-2) ... 207s Setting up fonts-dejavu-mono (2.37-8) ... 207s Setting up libhwloc15:armhf (2.12.0-1) ... 207s Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... 207s Setting up fonts-dejavu-core (2.37-8) ... 207s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 207s Setting up libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 207s Setting up libgfortran5:armhf (15-20250404-0ubuntu1) ... 207s Setting up libvulkan1:armhf (1.4.304.0-1) ... 207s Setting up libwebp7:armhf (1.5.0-0.1) ... 207s Setting up libmpich12:armhf (4.2.1-5) ... 207s Setting up libxshmfence1:armhf (1.3.3-1) ... 207s Setting up libxcb-randr0:armhf (1.17.0-2) ... 207s Setting up libxss1:armhf (1:1.2.3-1build3) ... 207s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 207s Setting up libsz2:armhf (1.1.3-1) ... 207s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 207s Setting up mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 207s Setting up liblapack3:armhf (3.12.1-2) ... 207s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 207s Setting up libgbm1:armhf (25.0.3-1ubuntu2) ... 207s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 208s Setting up libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 208s Setting up hwloc-nox (2.12.0-1) ... 208s Setting up libkim-api2:armhf (2.3.0-1ubuntu1) ... 208s Setting up libtbbbind-2-5:armhf (2022.0.0-2) ... 208s Setting up libhdf5-310:armhf (1.14.5+repack-3) ... 208s Setting up libtiff6:armhf (4.7.0-3ubuntu1) ... 208s Setting up libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 208s Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ... 208s Setting up libxft2:armhf (2.3.6-1build1) ... 208s Setting up libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 208s Setting up libglx0:armhf (1.7.0-1build1) ... 208s Setting up libproj25:armhf (9.5.1-1) ... 208s Setting up mpich (4.2.1-5) ... 208s update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode 208s update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode 208s Setting up libtk8.6:armhf (8.6.16-1) ... 208s Setting up libnetcdf22:armhf (1:4.9.3-1) ... 208s Setting up mpi-default-bin (1.18) ... 208s Setting up libtbb12:armhf (2022.0.0-2) ... 208s Setting up libcairo2:armhf (1.18.4-1) ... 208s Setting up libgl1:armhf (1.7.0-1build1) ... 208s Setting up libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ... 208s Setting up libglew2.2:armhf (2.2.0-4build1) ... 208s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 208s Setting up libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 208s Setting up liblammps0t64:armhf (20240207+dfsg-3build3) ... 208s Setting up lammps (20240207+dfsg-3build3) ... 208s Processing triggers for man-db (2.13.0-1) ... 208s Processing triggers for libc-bin (2.41-6ubuntu1) ... 218s autopkgtest [11:51:37]: test crack: [----------------------- 220s LAMMPS (7 Feb 2024 - Update 1) 220s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 220s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 220s using 1 OpenMP thread(s) per MPI task 220s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 220s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 220s 2 by 1 by 1 MPI processor grid 220s Created 8141 atoms 220s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 220s create_atoms CPU = 0.001 seconds 220s 302 atoms in group lower 220s 302 atoms in group upper 220s 604 atoms in group boundary 220s 7537 atoms in group mobile 220s 841 atoms in group leftupper 220s 841 atoms in group leftlower 220s Setting atom values ... 220s 841 settings made for type 220s Setting atom values ... 220s 841 settings made for type 220s Setting atom values ... 220s 302 settings made for type 220s Setting atom values ... 220s 302 settings made for type 220s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 220s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 220s Neighbor list info ... 220s update: every = 1 steps, delay = 5 steps, check = yes 220s max neighbors/atom: 2000, page size: 100000 220s master list distance cutoff = 2.8 220s ghost atom cutoff = 2.8 220s binsize = 1.4, bins = 80 56 1 220s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 220s (1) pair lj/cut, perpetual 220s attributes: half, newton on 220s pair build: half/bin/atomonly/newton 220s stencil: half/bin/2d 220s bin: standard 220s Setting up Verlet run ... 220s Unit style : lj 220s Current step : 0 220s Time step : 0.003 220s Per MPI rank memory allocation (min/avg/max) = 2.784 | 2.784 | 2.784 Mbytes 220s Step Temp E_pair E_mol TotEng Press Volume 220s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 220s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 221s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 221s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 221s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 221s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 221s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 221s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 221s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 221s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 222s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 222s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 222s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 222s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 222s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 222s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 222s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 222s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 223s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 223s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 223s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 223s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 223s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 223s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 223s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 223s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 223s Loop time of 3.16979 on 2 procs for 5000 steps with 8141 atoms 223s 223s Performance: 408859.752 tau/day, 1577.391 timesteps/s, 12.842 Matom-step/s 223s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 223s 223s MPI task timing breakdown: 223s Section | min time | avg time | max time |%varavg| %total 223s --------------------------------------------------------------- 223s Pair | 2.5837 | 2.591 | 2.5984 | 0.5 | 81.74 223s Neigh | 0.12169 | 0.12511 | 0.12852 | 1.0 | 3.95 223s Comm | 0.10703 | 0.10932 | 0.11161 | 0.7 | 3.45 223s Output | 0.0010763 | 0.0014641 | 0.0018518 | 1.0 | 0.05 223s Modify | 0.23107 | 0.23165 | 0.23222 | 0.1 | 7.31 223s Other | | 0.1112 | | | 3.51 223s 223s Nlocal: 4070.5 ave 4085 max 4056 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s Nghost: 207 ave 208 max 206 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s Neighs: 35700 ave 35927 max 35473 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s 223s Total # of neighbors = 71400 223s Ave neighs/atom = 8.7704213 223s Neighbor list builds = 106 223s Dangerous builds = 0 223s Total wall time: 0:00:03 224s LAMMPS (7 Feb 2024 - Update 1) 224s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 224s using 1 OpenMP thread(s) per MPI task 224s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 224s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 224s 1 by 1 by 1 MPI processor grid 224s Created 8141 atoms 224s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 224s create_atoms CPU = 0.002 seconds 224s 302 atoms in group lower 224s 302 atoms in group upper 224s 604 atoms in group boundary 224s 7537 atoms in group mobile 224s 841 atoms in group leftupper 224s 841 atoms in group leftlower 224s Setting atom values ... 224s 841 settings made for type 224s Setting atom values ... 224s 841 settings made for type 224s Setting atom values ... 224s 302 settings made for type 224s Setting atom values ... 224s 302 settings made for type 224s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 224s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 224s Neighbor list info ... 224s update: every = 1 steps, delay = 5 steps, check = yes 224s max neighbors/atom: 2000, page size: 100000 224s master list distance cutoff = 2.8 224s ghost atom cutoff = 2.8 224s binsize = 1.4, bins = 80 56 1 224s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 224s (1) pair lj/cut, perpetual 224s attributes: half, newton on 224s pair build: half/bin/atomonly/newton 224s stencil: half/bin/2d 224s bin: standard 224s Setting up Verlet run ... 224s Unit style : lj 224s Current step : 0 224s Time step : 0.003 224s Per MPI rank memory allocation (min/avg/max) = 2.8 | 2.8 | 2.8 Mbytes 224s Step Temp E_pair E_mol TotEng Press Volume 224s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 224s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 224s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 224s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 224s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 225s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 225s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 225s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 225s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 226s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 226s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 226s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 226s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 227s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 227s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 227s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 227s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 228s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 228s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 228s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 228s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 229s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 229s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 229s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 229s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 230s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 230s Loop time of 6.09879 on 1 procs for 5000 steps with 8141 atoms 230s 230s Performance: 212501.248 tau/day, 819.835 timesteps/s, 6.674 Matom-step/s 230s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 230s 230s MPI task timing breakdown: 230s Section | min time | avg time | max time |%varavg| %total 230s --------------------------------------------------------------- 230s Pair | 5.1981 | 5.1981 | 5.1981 | 0.0 | 85.23 230s Neigh | 0.23284 | 0.23284 | 0.23284 | 0.0 | 3.82 230s Comm | 0.02093 | 0.02093 | 0.02093 | 0.0 | 0.34 230s Output | 0.0022279 | 0.0022279 | 0.0022279 | 0.0 | 0.04 230s Modify | 0.46479 | 0.46479 | 0.46479 | 0.0 | 7.62 230s Other | | 0.1799 | | | 2.95 230s 230s Nlocal: 8141 ave 8141 max 8141 min 230s Histogram: 1 0 0 0 0 0 0 0 0 0 230s Nghost: 0 ave 0 max 0 min 230s Histogram: 1 0 0 0 0 0 0 0 0 0 230s Neighs: 71389 ave 71389 max 71389 min 230s Histogram: 1 0 0 0 0 0 0 0 0 0 230s 230s Total # of neighbors = 71389 230s Ave neighs/atom = 8.7690701 230s Neighbor list builds = 100 230s Dangerous builds = 0 230s Total wall time: 0:00:06 230s run: OK 230s autopkgtest [11:51:49]: test crack: -----------------------] 234s autopkgtest [11:51:53]: test crack: - - - - - - - - - - results - - - - - - - - - - 234s crack PASS 238s autopkgtest [11:51:57]: test dipole: preparing testbed 240s Reading package lists... 240s Building dependency tree... 240s Reading state information... 240s Starting pkgProblemResolver with broken count: 0 240s Starting 2 pkgProblemResolver with broken count: 0 240s Done 241s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 249s autopkgtest [11:52:08]: test dipole: [----------------------- 251s LAMMPS (7 Feb 2024 - Update 1) 251s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 251s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 251s using 1 OpenMP thread(s) per MPI task 251s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 251s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 251s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 251s 2 by 1 by 1 MPI processor grid 251s Created 200 atoms 251s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 251s create_atoms CPU = 0.001 seconds 251s Setting atom values ... 251s 200 settings made for mass 251s Setting atom values ... 251s 200 settings made for dipole/random 251s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 251s Neighbor list info ... 251s update: every = 1 steps, delay = 0 steps, check = yes 251s max neighbors/atom: 2000, page size: 100000 251s master list distance cutoff = 2.8 251s ghost atom cutoff = 2.8 251s binsize = 1.4, bins = 13 13 2 251s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 251s (1) pair lj/cut/dipole/cut, perpetual 251s attributes: half, newton on 251s pair build: half/bin/atomonly/newton 251s stencil: half/bin/2d 251s bin: standard 251s Setting up Verlet run ... 251s Unit style : lj 251s Current step : 0 251s Time step : 0.005 251s Per MPI rank memory allocation (min/avg/max) = 4.549 | 4.549 | 4.549 Mbytes 251s Step Temp E_pair c_erot TotEng Press 251s 0 0 -2.0965715 0 -2.0965715 -2.4759659 251s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 251s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 251s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 251s 2000 0.44906427 -2.8037479 0.24422576 -2.356929 0.15010432 251s 2500 0.46058471 -2.8143585 0.25012657 -2.3560767 -0.38282545 251s 3000 0.47344306 -2.8070454 0.22839921 -2.3359696 0.0086809905 251s 3500 0.40527008 -2.7047531 0.20199859 -2.3015094 0.28576366 251s 4000 0.45532509 -2.7724376 0.22443356 -2.3193892 -0.026546855 251s 4500 0.43501879 -2.7267497 0.20510275 -2.293906 -0.063127027 251s 5000 0.42443514 -2.745851 0.24060818 -2.3235381 -0.025742709 251s 5500 0.3839334 -2.7073937 0.24270814 -2.32538 -0.07170774 251s 6000 0.42922278 -2.7478329 0.25153908 -2.3207562 -0.47398846 251s 6500 0.45362461 -2.7967795 0.2756071 -2.345423 0.064335127 251s 7000 0.426427 -2.7100719 0.21223279 -2.2857771 0.23817765 252s 7500 0.44329907 -2.7592192 0.25431233 -2.3181366 -0.48160925 252s 8000 0.45710982 -2.746352 0.23112717 -2.2915277 0.067805988 252s 8500 0.45706146 -2.7008059 0.20546196 -2.2460298 -0.11582213 252s 9000 0.46491089 -2.7354016 0.23514028 -2.2728153 -0.25398947 252s 9500 0.44183004 -2.6848933 0.22534954 -2.2452724 -0.047314023 252s 10000 0.42741048 -2.7131911 0.27211413 -2.2879177 0.12679961 252s Loop time of 0.727089 on 2 procs for 10000 steps with 200 atoms 252s 252s Performance: 5941498.953 tau/day, 13753.470 timesteps/s, 2.751 Matom-step/s 252s 96.9% CPU use with 2 MPI tasks x 1 OpenMP threads 252s 252s MPI task timing breakdown: 252s Section | min time | avg time | max time |%varavg| %total 252s --------------------------------------------------------------- 252s Pair | 0.33755 | 0.36523 | 0.39292 | 4.6 | 50.23 252s Neigh | 0.016753 | 0.017692 | 0.01863 | 0.7 | 2.43 252s Comm | 0.22911 | 0.25703 | 0.28495 | 5.5 | 35.35 252s Output | 0.0010347 | 0.0014572 | 0.0018796 | 1.1 | 0.20 252s Modify | 0.033614 | 0.034381 | 0.035147 | 0.4 | 4.73 252s Other | | 0.0513 | | | 7.06 252s 252s Nlocal: 100 ave 106 max 94 min 252s Histogram: 1 0 0 0 0 0 0 0 0 1 252s Nghost: 118.5 ave 120 max 117 min 252s Histogram: 1 0 0 0 0 0 0 0 0 1 252s Neighs: 827.5 ave 911 max 744 min 252s Histogram: 1 0 0 0 0 0 0 0 0 1 252s 252s Total # of neighbors = 1655 252s Ave neighs/atom = 8.275 252s Neighbor list builds = 692 252s Dangerous builds = 0 252s Total wall time: 0:00:00 252s LAMMPS (7 Feb 2024 - Update 1) 252s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 252s using 1 OpenMP thread(s) per MPI task 252s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 252s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 252s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 252s 1 by 1 by 1 MPI processor grid 252s Created 200 atoms 252s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 252s create_atoms CPU = 0.001 seconds 252s Setting atom values ... 252s 200 settings made for mass 252s Setting atom values ... 252s 200 settings made for dipole/random 252s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 252s Neighbor list info ... 252s update: every = 1 steps, delay = 0 steps, check = yes 252s max neighbors/atom: 2000, page size: 100000 252s master list distance cutoff = 2.8 252s ghost atom cutoff = 2.8 252s binsize = 1.4, bins = 13 13 2 252s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 252s (1) pair lj/cut/dipole/cut, perpetual 252s attributes: half, newton on 252s pair build: half/bin/atomonly/newton 252s stencil: half/bin/2d 252s bin: standard 252s Setting up Verlet run ... 252s Unit style : lj 252s Current step : 0 252s Time step : 0.005 252s Per MPI rank memory allocation (min/avg/max) = 4.55 | 4.55 | 4.55 Mbytes 252s Step Temp E_pair c_erot TotEng Press 252s 0 0 -2.0965715 0 -2.0965715 -2.4759659 252s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 252s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 252s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 252s 2000 0.44906527 -2.8037488 0.24422567 -2.3569289 0.15010101 252s 2500 0.46052127 -2.8142136 0.25010172 -2.355995 -0.38222495 252s 3000 0.48349143 -2.8019094 0.21892648 -2.3208354 -0.021940474 252s 3500 0.42818128 -2.7407155 0.22510159 -2.3146751 -0.01916692 252s 4000 0.43447865 -2.7251092 0.21179003 -2.292803 -0.054070562 252s 4500 0.49679675 -2.7760513 0.19789317 -2.2817386 -0.01374163 252s 5000 0.45369814 -2.7436186 0.22108827 -2.2921889 0.032452862 252s 5500 0.49381571 -2.8052843 0.24840557 -2.3139377 -0.011483656 252s 6000 0.47486262 -2.762914 0.230038 -2.2904257 0.35084172 252s 6500 0.47834729 -2.7628296 0.23242786 -2.286874 -0.084199114 252s 7000 0.4554671 -2.7485479 0.25152556 -2.2953581 -0.41657484 253s 7500 0.48688446 -2.7468396 0.22672266 -2.2623895 0.19798746 253s 8000 0.42093195 -2.6889197 0.24972685 -2.2700924 -0.048022487 253s 8500 0.44505913 -2.65779 0.18787506 -2.2149561 0.23409841 253s 9000 0.48102255 -2.7186808 0.22041232 -2.2400634 0.26761374 253s 9500 0.41955498 -2.688272 0.26237731 -2.2708148 0.1556688 253s 10000 0.47397757 -2.683164 0.2078595 -2.2115563 -0.21881739 253s Loop time of 0.900217 on 1 procs for 10000 steps with 200 atoms 253s 253s Performance: 4798845.456 tau/day, 11108.439 timesteps/s, 2.222 Matom-step/s 253s 97.9% CPU use with 1 MPI tasks x 1 OpenMP threads 253s 253s MPI task timing breakdown: 253s Section | min time | avg time | max time |%varavg| %total 253s --------------------------------------------------------------- 253s Pair | 0.72775 | 0.72775 | 0.72775 | 0.0 | 80.84 253s Neigh | 0.034251 | 0.034251 | 0.034251 | 0.0 | 3.80 253s Comm | 0.047744 | 0.047744 | 0.047744 | 0.0 | 5.30 253s Output | 0.00087725 | 0.00087725 | 0.00087725 | 0.0 | 0.10 253s Modify | 0.059961 | 0.059961 | 0.059961 | 0.0 | 6.66 253s Other | | 0.02963 | | | 3.29 253s 253s Nlocal: 200 ave 200 max 200 min 253s Histogram: 1 0 0 0 0 0 0 0 0 0 253s Nghost: 166 ave 166 max 166 min 253s Histogram: 1 0 0 0 0 0 0 0 0 0 253s Neighs: 1624 ave 1624 max 1624 min 253s Histogram: 1 0 0 0 0 0 0 0 0 0 253s 253s Total # of neighbors = 1624 253s Ave neighs/atom = 8.12 253s Neighbor list builds = 703 253s Dangerous builds = 0 253s Total wall time: 0:00:00 253s run: OK 253s autopkgtest [11:52:12]: test dipole: -----------------------] 257s autopkgtest [11:52:16]: test dipole: - - - - - - - - - - results - - - - - - - - - - 257s dipole PASS 261s autopkgtest [11:52:20]: test ellipse: preparing testbed 263s Reading package lists... 263s Building dependency tree... 263s Reading state information... 263s Starting pkgProblemResolver with broken count: 0 263s Starting 2 pkgProblemResolver with broken count: 0 263s Done 264s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 271s autopkgtest [11:52:30]: test ellipse: [----------------------- 273s LAMMPS (7 Feb 2024 - Update 1) 273s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 273s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 273s using 1 OpenMP thread(s) per MPI task 273s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 273s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 273s 2 by 1 by 1 MPI processor grid 273s Created 400 atoms 273s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 273s create_atoms CPU = 0.000 seconds 273s Setting atom values ... 273s 29 settings made for type/fraction 273s Setting atom values ... 273s 371 settings made for mass 273s Setting atom values ... 273s 29 settings made for mass 273s Setting atom values ... 273s 371 settings made for shape 273s Setting atom values ... 273s 29 settings made for shape 273s Setting atom values ... 273s 400 settings made for quat/random 273s 371 atoms in group spheroid 273s 273s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 273s 273s Your simulation uses code contributions which should be cited: 273s - pair gayberne command: doi:10.1063/1.3058435 273s The log file lists these citations in BibTeX format. 273s 273s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 273s 273s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 273s Neighbor list info ... 273s update: every = 1 steps, delay = 0 steps, check = yes 273s max neighbors/atom: 2000, page size: 100000 273s master list distance cutoff = 4.8 273s ghost atom cutoff = 4.8 273s binsize = 2.4, bins = 59 59 3 273s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 273s (1) pair gayberne, perpetual 273s attributes: half, newton on 273s pair build: half/bin/atomonly/newton 273s stencil: half/bin/2d 273s bin: standard 273s Setting up Verlet run ... 273s Unit style : lj 273s Current step : 0 273s Time step : 0.002 273s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 273s Step c_rot E_pair TotEng Press Volume 273s 0 2.3158404 0 2.394 0.04788 20000 273s 100 1.7101139 0 1.7678302 0.034413192 20548.286 273s 200 2.3115592 0 2.3895743 0.04649702 20556.796 273s 300 1.831333 0 1.8931405 0.041256922 18354.646 273s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 273s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 273s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 273s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 273s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 273s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 273s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 273s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 273s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 273s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 274s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 274s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 274s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 274s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 274s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 274s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 274s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 274s Loop time of 0.398489 on 2 procs for 2000 steps with 400 atoms 274s 274s Performance: 867276.053 tau/day, 5018.959 timesteps/s, 2.008 Matom-step/s 274s 98.0% CPU use with 2 MPI tasks x 1 OpenMP threads 274s 274s MPI task timing breakdown: 274s Section | min time | avg time | max time |%varavg| %total 274s --------------------------------------------------------------- 274s Pair | 0.19671 | 0.22152 | 0.24633 | 5.3 | 55.59 274s Neigh | 0.010951 | 0.011023 | 0.011094 | 0.1 | 2.77 274s Comm | 0.026279 | 0.050877 | 0.075474 | 10.9 | 12.77 274s Output | 0.01261 | 0.01289 | 0.01317 | 0.2 | 3.23 274s Modify | 0.089789 | 0.090527 | 0.091265 | 0.2 | 22.72 274s Other | | 0.01166 | | | 2.93 274s 274s Nlocal: 200 ave 211 max 189 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s Nghost: 215 ave 217 max 213 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s Neighs: 1561 ave 1651 max 1471 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s 274s Total # of neighbors = 3122 274s Ave neighs/atom = 7.805 274s Neighbor list builds = 346 274s Dangerous builds = 0 274s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 274s Setting up Verlet run ... 274s Unit style : lj 274s Current step : 2000 274s Time step : 0.002 274s Per MPI rank memory allocation (min/avg/max) = 6.461 | 6.461 | 6.461 Mbytes 274s Step c_rot E_pair TotEng Press Volume 274s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 274s 2100 1.9040485 -3.6005672 -1.6802923 0.39862443 989.96894 274s 2200 1.8951971 -3.5921565 -1.6947175 1.0260215 989.96894 274s 2300 2.0029243 -3.7081933 -1.6838652 0.66970186 989.96894 274s 2400 2.027189 -3.7314224 -1.7100024 0.89700378 989.96894 274s 2500 2.0661215 -3.7753463 -1.702413 0.57671879 989.96894 274s 2600 2.0610733 -3.7707904 -1.7111988 0.90914683 989.96894 274s 2700 2.0505106 -3.7599067 -1.7337499 0.65660966 989.96894 274s 2800 2.1106444 -3.8219338 -1.7370714 0.55276913 989.96894 274s 2900 2.0347978 -3.7428385 -1.7135242 0.69752989 989.96894 274s 3000 2.0331089 -3.7397511 -1.7515341 0.052123917 989.96894 274s 3100 1.9983479 -3.7074978 -1.7158075 0.7551458 989.96894 274s 3200 2.1299896 -3.8449355 -1.7171591 1.055861 989.96894 274s 3300 2.079427 -3.7934717 -1.684941 1.1625179 989.96894 274s 3400 2.1499496 -3.8651326 -1.703348 0.58109397 989.96894 274s 3500 2.0901278 -3.8054829 -1.699465 1.0231781 989.96894 274s 3600 2.1041735 -3.8168043 -1.6893938 1.0813513 989.96894 274s 3700 2.0650932 -3.7777761 -1.7224926 1.3120953 989.96894 274s 3800 2.0166275 -3.7282861 -1.7416258 0.78824642 989.96894 274s 3900 2.0726099 -3.7842546 -1.7339991 0.92130013 989.96894 274s 4000 2.1298275 -3.8450909 -1.7237177 0.95785441 989.96894 274s Loop time of 0.397677 on 2 procs for 2000 steps with 400 atoms 274s 274s Performance: 869047.016 tau/day, 5029.207 timesteps/s, 2.012 Matom-step/s 274s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 274s 274s MPI task timing breakdown: 274s Section | min time | avg time | max time |%varavg| %total 274s --------------------------------------------------------------- 274s Pair | 0.28705 | 0.28705 | 0.28706 | 0.0 | 72.18 274s Neigh | 0.0028949 | 0.0032402 | 0.0035855 | 0.6 | 0.81 274s Comm | 0.035824 | 0.03607 | 0.036316 | 0.1 | 9.07 274s Output | 0.013535 | 0.013808 | 0.014081 | 0.2 | 3.47 274s Modify | 0.039396 | 0.043967 | 0.048538 | 2.2 | 11.06 274s Other | | 0.01354 | | | 3.40 274s 274s Nlocal: 200 ave 228 max 172 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s Nghost: 209 ave 215 max 203 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s Neighs: 1639.5 ave 1963 max 1316 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s 274s Total # of neighbors = 3279 274s Ave neighs/atom = 8.1975 274s Neighbor list builds = 50 274s Dangerous builds = 0 274s Total wall time: 0:00:00 274s LAMMPS (7 Feb 2024 - Update 1) 274s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 274s using 1 OpenMP thread(s) per MPI task 274s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 274s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 274s 1 by 1 by 1 MPI processor grid 274s Created 400 atoms 274s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 274s create_atoms CPU = 0.000 seconds 274s Setting atom values ... 274s 29 settings made for type/fraction 274s Setting atom values ... 274s 371 settings made for mass 274s Setting atom values ... 274s 29 settings made for mass 274s Setting atom values ... 274s 371 settings made for shape 274s Setting atom values ... 274s 29 settings made for shape 274s Setting atom values ... 274s 400 settings made for quat/random 274s 371 atoms in group spheroid 274s 274s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 274s 274s Your simulation uses code contributions which should be cited: 274s - pair gayberne command: doi:10.1063/1.3058435 274s The log file lists these citations in BibTeX format. 274s 274s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 274s 274s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 274s Neighbor list info ... 274s update: every = 1 steps, delay = 0 steps, check = yes 274s max neighbors/atom: 2000, page size: 100000 274s master list distance cutoff = 4.8 274s ghost atom cutoff = 4.8 274s binsize = 2.4, bins = 59 59 3 274s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 274s (1) pair gayberne, perpetual 274s attributes: half, newton on 274s pair build: half/bin/atomonly/newton 274s stencil: half/bin/2d 274s bin: standard 274s Setting up Verlet run ... 274s Unit style : lj 274s Current step : 0 274s Time step : 0.002 274s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 274s Step c_rot E_pair TotEng Press Volume 274s 0 2.3158404 0 2.394 0.04788 20000 274s 100 1.7101139 0 1.7678302 0.034413192 20548.286 274s 200 2.3115592 0 2.3895743 0.04649702 20556.796 274s 300 1.831333 0 1.8931405 0.041256922 18354.646 274s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 274s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 274s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 274s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 274s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 274s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 274s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 274s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 274s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 274s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 275s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 275s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 275s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 275s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 275s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 275s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 275s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 275s Loop time of 0.66178 on 1 procs for 2000 steps with 400 atoms 275s 275s Performance: 522228.255 tau/day, 3022.154 timesteps/s, 1.209 Matom-step/s 275s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 275s 275s MPI task timing breakdown: 275s Section | min time | avg time | max time |%varavg| %total 275s --------------------------------------------------------------- 275s Pair | 0.4428 | 0.4428 | 0.4428 | 0.0 | 66.91 275s Neigh | 0.021819 | 0.021819 | 0.021819 | 0.0 | 3.30 275s Comm | 0.014116 | 0.014116 | 0.014116 | 0.0 | 2.13 275s Output | 0.022549 | 0.022549 | 0.022549 | 0.0 | 3.41 275s Modify | 0.15013 | 0.15013 | 0.15013 | 0.0 | 22.69 275s Other | | 0.01037 | | | 1.57 275s 275s Nlocal: 400 ave 400 max 400 min 275s Histogram: 1 0 0 0 0 0 0 0 0 0 275s Nghost: 276 ave 276 max 276 min 275s Histogram: 1 0 0 0 0 0 0 0 0 0 275s Neighs: 3122 ave 3122 max 3122 min 275s Histogram: 1 0 0 0 0 0 0 0 0 0 275s 275s Total # of neighbors = 3122 275s Ave neighs/atom = 7.805 275s Neighbor list builds = 346 275s Dangerous builds = 0 275s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 275s Setting up Verlet run ... 275s Unit style : lj 275s Current step : 2000 275s Time step : 0.002 275s Per MPI rank memory allocation (min/avg/max) = 6.488 | 6.488 | 6.488 Mbytes 275s Step c_rot E_pair TotEng Press Volume 275s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 275s 2100 1.9040485 -3.6005672 -1.6802923 0.39862445 989.96894 275s 2200 1.895197 -3.5921565 -1.6947175 1.0260215 989.96894 275s 2300 2.0029243 -3.7081933 -1.6838652 0.66970181 989.96894 275s 2400 2.027189 -3.7314224 -1.7100024 0.89700379 989.96894 275s 2500 2.0661215 -3.7753462 -1.702413 0.57671817 989.96894 275s 2600 2.0610736 -3.7707907 -1.7111987 0.90914701 989.96894 275s 2700 2.0505116 -3.7599078 -1.7337505 0.65660586 989.96894 275s 2800 2.1106432 -3.8219326 -1.7370705 0.55276071 989.96894 275s 2900 2.0347944 -3.7428349 -1.7135244 0.69753379 989.96894 275s 3000 2.033092 -3.739734 -1.7515318 0.05219688 989.96894 275s 3100 1.9983562 -3.707508 -1.7158135 0.75509883 989.96894 275s 3200 2.1298063 -3.8447512 -1.7171502 1.0568228 989.96894 275s 3300 2.0791428 -3.7931834 -1.6847086 1.1627829 989.96894 275s 3400 2.1498359 -3.8650337 -1.7032074 0.58032554 989.96894 275s 3500 2.0904809 -3.805739 -1.6981978 1.0208226 989.96894 275s 3600 2.1048714 -3.8174009 -1.691117 1.0550021 989.96894 275s 3700 2.0745341 -3.7874614 -1.7155849 1.3035756 989.96894 275s 3800 2.0439729 -3.7569157 -1.7364298 0.76483567 989.96894 275s 3900 2.0498921 -3.7613373 -1.7218798 1.0164212 989.96894 276s 4000 2.0584264 -3.7719072 -1.7005071 0.89500692 989.96894 276s Loop time of 0.712368 on 1 procs for 2000 steps with 400 atoms 276s 276s Performance: 485142.193 tau/day, 2807.536 timesteps/s, 1.123 Matom-step/s 276s 98.4% CPU use with 1 MPI tasks x 1 OpenMP threads 276s 276s MPI task timing breakdown: 276s Section | min time | avg time | max time |%varavg| %total 276s --------------------------------------------------------------- 276s Pair | 0.57351 | 0.57351 | 0.57351 | 0.0 | 80.51 276s Neigh | 0.0062543 | 0.0062543 | 0.0062543 | 0.0 | 0.88 276s Comm | 0.01386 | 0.01386 | 0.01386 | 0.0 | 1.95 276s Output | 0.022432 | 0.022432 | 0.022432 | 0.0 | 3.15 276s Modify | 0.087205 | 0.087205 | 0.087205 | 0.0 | 12.24 276s Other | | 0.009106 | | | 1.28 276s 276s Nlocal: 400 ave 400 max 400 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s Nghost: 284 ave 284 max 284 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s Neighs: 3286 ave 3286 max 3286 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s 276s Total # of neighbors = 3286 276s Ave neighs/atom = 8.215 276s Neighbor list builds = 50 276s Dangerous builds = 0 276s Total wall time: 0:00:01 276s LAMMPS (7 Feb 2024 - Update 1) 276s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 276s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 276s using 1 OpenMP thread(s) per MPI task 276s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 276s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 276s 2 by 1 by 1 MPI processor grid 276s Created 400 atoms 276s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 276s create_atoms CPU = 0.000 seconds 276s Setting atom values ... 276s 29 settings made for type/fraction 276s Setting atom values ... 276s 371 settings made for mass 276s Setting atom values ... 276s 29 settings made for mass 276s Setting atom values ... 276s 371 settings made for shape 276s Setting atom values ... 276s 29 settings made for shape 276s Setting atom values ... 276s 400 settings made for quat/random 276s 371 atoms in group spheroid 276s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 276s Neighbor list info ... 276s update: every = 1 steps, delay = 0 steps, check = yes 276s max neighbors/atom: 2000, page size: 100000 276s master list distance cutoff = 4.8 276s ghost atom cutoff = 4.8 276s binsize = 2.4, bins = 59 59 3 276s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 276s (1) pair resquared, perpetual 276s attributes: half, newton on 276s pair build: half/bin/atomonly/newton 276s stencil: half/bin/2d 276s bin: standard 276s Setting up Verlet run ... 276s Unit style : lj 276s Current step : 0 276s Time step : 0.002 276s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 276s Step c_rot E_pair TotEng Press Volume 276s 0 2.3158404 0 2.394 0.04788 20000 276s 100 1.7101139 0 1.7678302 0.034413192 20548.286 276s 200 2.3115592 0 2.3895743 0.04649702 20556.796 276s 300 1.831333 0 1.8931405 0.041256922 18354.646 276s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 276s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 276s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 276s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 276s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 276s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 276s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 276s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 276s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 276s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 276s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 276s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 276s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 276s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 276s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 276s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 276s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 276s Loop time of 0.634633 on 2 procs for 2000 steps with 400 atoms 276s 276s Performance: 544566.350 tau/day, 3151.426 timesteps/s, 1.261 Matom-step/s 276s 98.7% CPU use with 2 MPI tasks x 1 OpenMP threads 276s 276s MPI task timing breakdown: 276s Section | min time | avg time | max time |%varavg| %total 276s --------------------------------------------------------------- 276s Pair | 0.45575 | 0.46515 | 0.47454 | 1.4 | 73.29 276s Neigh | 0.011444 | 0.011551 | 0.011658 | 0.1 | 1.82 276s Comm | 0.030463 | 0.039835 | 0.049208 | 4.7 | 6.28 276s Output | 0.012672 | 0.012958 | 0.013244 | 0.3 | 2.04 276s Modify | 0.093123 | 0.093466 | 0.09381 | 0.1 | 14.73 276s Other | | 0.01167 | | | 1.84 276s 276s Nlocal: 200 ave 210 max 190 min 276s Histogram: 1 0 0 0 0 0 0 0 0 1 276s Nghost: 164 ave 168 max 160 min 276s Histogram: 1 0 0 0 0 0 0 0 0 1 276s Neighs: 910 ave 958 max 862 min 276s Histogram: 1 0 0 0 0 0 0 0 0 1 276s 276s Total # of neighbors = 1820 276s Ave neighs/atom = 4.55 276s Neighbor list builds = 420 276s Dangerous builds = 0 276s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 276s Setting up Verlet run ... 276s Unit style : lj 276s Current step : 2000 276s Time step : 0.002 276s Per MPI rank memory allocation (min/avg/max) = 6.452 | 6.452 | 6.452 Mbytes 276s Step c_rot E_pair TotEng Press Volume 276s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 276s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 276s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 276s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 276s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 276s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 277s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 277s 2700 2.0106221 0.13364603 2.1384766 1.1322764 1639.6982 277s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 277s 2900 1.9922852 0.15256969 2.0956529 1.2419163 1639.6982 277s 3000 1.9618081 0.18405952 2.1392907 1.3468022 1639.6982 277s 3100 1.9208141 0.22640846 2.1223515 1.6487932 1639.6982 277s 3200 1.9201454 0.22718165 2.1360381 1.5370081 1639.6982 277s 3300 2.0073185 0.13690917 2.1185875 1.1974013 1639.6982 277s 3400 2.0179674 0.12601938 2.1227813 1.0847666 1639.6982 277s 3500 1.9561087 0.18991131 2.1150364 1.337739 1639.6982 277s 3600 1.9971228 0.14756112 2.1401422 1.2026317 1639.6982 277s 3700 1.9731706 0.1723087 2.1473857 1.273159 1639.6982 277s 3800 2.0001051 0.14443379 2.0995168 1.1502317 1639.6982 277s 3900 1.9911498 0.15371621 2.1424901 1.2279921 1639.6982 277s 4000 1.9825331 0.16267827 2.0899844 1.2154927 1639.6982 277s Loop time of 0.977991 on 2 procs for 2000 steps with 400 atoms 277s 277s Performance: 353377.664 tau/day, 2045.010 timesteps/s, 818.004 katom-step/s 277s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 277s 277s MPI task timing breakdown: 277s Section | min time | avg time | max time |%varavg| %total 277s --------------------------------------------------------------- 277s Pair | 0.79992 | 0.83994 | 0.87996 | 4.4 | 85.88 277s Neigh | 0.0022373 | 0.0023759 | 0.0025145 | 0.3 | 0.24 277s Comm | 0.024895 | 0.065138 | 0.10538 | 15.8 | 6.66 277s Output | 0.013364 | 0.013647 | 0.013929 | 0.2 | 1.40 277s Modify | 0.043058 | 0.04524 | 0.047423 | 1.0 | 4.63 277s Other | | 0.01165 | | | 1.19 277s 277s Nlocal: 200 ave 212 max 188 min 277s Histogram: 1 0 0 0 0 0 0 0 0 1 277s Nghost: 171.5 ave 173 max 170 min 277s Histogram: 1 0 0 0 0 0 0 0 0 1 277s Neighs: 880.5 ave 946 max 815 min 277s Histogram: 1 0 0 0 0 0 0 0 0 1 277s 277s Total # of neighbors = 1761 277s Ave neighs/atom = 4.4025 277s Neighbor list builds = 49 277s Dangerous builds = 0 277s Total wall time: 0:00:01 277s LAMMPS (7 Feb 2024 - Update 1) 277s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 277s using 1 OpenMP thread(s) per MPI task 277s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 277s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 277s 1 by 1 by 1 MPI processor grid 277s Created 400 atoms 277s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 277s create_atoms CPU = 0.000 seconds 277s Setting atom values ... 277s 29 settings made for type/fraction 277s Setting atom values ... 277s 371 settings made for mass 277s Setting atom values ... 277s 29 settings made for mass 277s Setting atom values ... 277s 371 settings made for shape 277s Setting atom values ... 277s 29 settings made for shape 277s Setting atom values ... 277s 400 settings made for quat/random 277s 371 atoms in group spheroid 277s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 277s Neighbor list info ... 277s update: every = 1 steps, delay = 0 steps, check = yes 277s max neighbors/atom: 2000, page size: 100000 277s master list distance cutoff = 4.8 277s ghost atom cutoff = 4.8 277s binsize = 2.4, bins = 59 59 3 277s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 277s (1) pair resquared, perpetual 277s attributes: half, newton on 277s pair build: half/bin/atomonly/newton 277s stencil: half/bin/2d 277s bin: standard 277s Setting up Verlet run ... 277s Unit style : lj 277s Current step : 0 277s Time step : 0.002 277s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 277s Step c_rot E_pair TotEng Press Volume 277s 0 2.3158404 0 2.394 0.04788 20000 277s 100 1.7101139 0 1.7678302 0.034413192 20548.286 277s 200 2.3115592 0 2.3895743 0.04649702 20556.796 277s 300 1.831333 0 1.8931405 0.041256922 18354.646 277s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 277s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 277s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 277s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 277s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 278s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 278s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 278s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 278s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 278s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 278s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 278s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 278s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 278s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 278s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 278s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 278s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 278s Loop time of 1.13798 on 1 procs for 2000 steps with 400 atoms 278s 278s Performance: 303695.921 tau/day, 1757.500 timesteps/s, 703.000 katom-step/s 278s 98.9% CPU use with 1 MPI tasks x 1 OpenMP threads 278s 278s MPI task timing breakdown: 278s Section | min time | avg time | max time |%varavg| %total 278s --------------------------------------------------------------- 278s Pair | 0.92244 | 0.92244 | 0.92244 | 0.0 | 81.06 278s Neigh | 0.022644 | 0.022644 | 0.022644 | 0.0 | 1.99 278s Comm | 0.011648 | 0.011648 | 0.011648 | 0.0 | 1.02 278s Output | 0.022488 | 0.022488 | 0.022488 | 0.0 | 1.98 278s Modify | 0.14852 | 0.14852 | 0.14852 | 0.0 | 13.05 278s Other | | 0.01025 | | | 0.90 278s 278s Nlocal: 400 ave 400 max 400 min 278s Histogram: 1 0 0 0 0 0 0 0 0 0 278s Nghost: 206 ave 206 max 206 min 278s Histogram: 1 0 0 0 0 0 0 0 0 0 278s Neighs: 1820 ave 1820 max 1820 min 278s Histogram: 1 0 0 0 0 0 0 0 0 0 278s 278s Total # of neighbors = 1820 278s Ave neighs/atom = 4.55 278s Neighbor list builds = 420 278s Dangerous builds = 0 278s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 278s Setting up Verlet run ... 278s Unit style : lj 278s Current step : 2000 278s Time step : 0.002 278s Per MPI rank memory allocation (min/avg/max) = 6.479 | 6.479 | 6.479 Mbytes 278s Step c_rot E_pair TotEng Press Volume 278s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 278s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 279s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 279s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 279s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 279s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 279s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 279s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 279s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 279s 2900 1.9922852 0.15256971 2.0956529 1.2419164 1639.6982 279s 3000 1.9618081 0.18405952 2.1392906 1.3468022 1639.6982 279s 3100 1.9208145 0.22640808 2.1223513 1.6487904 1639.6982 279s 3200 1.9201455 0.22718157 2.136038 1.5370079 1639.6982 280s 3300 2.0073203 0.13690734 2.1185861 1.1973861 1639.6982 280s 3400 2.0179675 0.12601936 2.1227814 1.0847665 1639.6982 280s 3500 1.956107 0.18991303 2.1150378 1.3377467 1639.6982 280s 3600 1.9971207 0.14756338 2.1401427 1.2026439 1639.6982 280s 3700 1.9731785 0.17230049 2.1473634 1.2731222 1639.6982 280s 3800 2.0001027 0.14443629 2.0995017 1.1502317 1639.6982 280s 3900 1.9911478 0.15371832 2.1424588 1.2279852 1639.6982 280s 4000 1.9824541 0.16275998 2.0899755 1.2158078 1639.6982 280s Loop time of 1.81532 on 1 procs for 2000 steps with 400 atoms 280s 280s Performance: 190380.024 tau/day, 1101.736 timesteps/s, 440.695 katom-step/s 280s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 280s 280s MPI task timing breakdown: 280s Section | min time | avg time | max time |%varavg| %total 280s --------------------------------------------------------------- 280s Pair | 1.6778 | 1.6778 | 1.6778 | 0.0 | 92.42 280s Neigh | 0.0046794 | 0.0046794 | 0.0046794 | 0.0 | 0.26 280s Comm | 0.011467 | 0.011467 | 0.011467 | 0.0 | 0.63 280s Output | 0.022847 | 0.022847 | 0.022847 | 0.0 | 1.26 280s Modify | 0.089528 | 0.089528 | 0.089528 | 0.0 | 4.93 280s Other | | 0.009034 | | | 0.50 280s 280s Nlocal: 400 ave 400 max 400 min 280s Histogram: 1 0 0 0 0 0 0 0 0 0 280s Nghost: 215 ave 215 max 215 min 280s Histogram: 1 0 0 0 0 0 0 0 0 0 280s Neighs: 1761 ave 1761 max 1761 min 280s Histogram: 1 0 0 0 0 0 0 0 0 0 280s 280s Total # of neighbors = 1761 280s Ave neighs/atom = 4.4025 280s Neighbor list builds = 49 280s Dangerous builds = 0 280s Total wall time: 0:00:02 280s run: OK 281s autopkgtest [11:52:40]: test ellipse: -----------------------] 284s ellipse PASS 284s autopkgtest [11:52:43]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 288s autopkgtest [11:52:47]: test flow: preparing testbed 290s Reading package lists... 290s Building dependency tree... 290s Reading state information... 291s Starting pkgProblemResolver with broken count: 0 291s Starting 2 pkgProblemResolver with broken count: 0 291s Done 292s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 299s autopkgtest [11:52:58]: test flow: [----------------------- 301s LAMMPS (7 Feb 2024 - Update 1) 301s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 301s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 301s using 1 OpenMP thread(s) per MPI task 301s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 301s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 301s 2 by 1 by 1 MPI processor grid 301s Created 420 atoms 301s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 301s create_atoms CPU = 0.000 seconds 301s 60 atoms in group lower 301s 60 atoms in group upper 301s 120 atoms in group boundary 301s 300 atoms in group flow 301s Setting atom values ... 301s 60 settings made for type 301s Setting atom values ... 301s 60 settings made for type 301s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 301s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 301s Neighbor list info ... 301s update: every = 1 steps, delay = 5 steps, check = yes 301s max neighbors/atom: 2000, page size: 100000 301s master list distance cutoff = 1.42246 301s ghost atom cutoff = 1.42246 301s binsize = 0.71123, bins = 37 32 1 301s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 301s (1) pair lj/cut, perpetual 301s attributes: half, newton on 301s pair build: half/bin/atomonly/newton 301s stencil: half/bin/2d 301s bin: standard 301s Setting up Verlet run ... 301s Unit style : lj 301s Current step : 0 301s Time step : 0.003 301s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 301s Step Temp E_pair E_mol TotEng Press Volume 301s 0 1 0 0 0.71190476 0.52314537 571.54286 301s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 301s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 301s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 301s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 301s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 301s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 301s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 301s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 301s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 301s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 301s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 301s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 301s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 302s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 302s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 302s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 302s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 302s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 302s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 302s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 302s Loop time of 0.180583 on 2 procs for 10000 steps with 420 atoms 302s 302s Performance: 14353521.384 tau/day, 55376.240 timesteps/s, 23.258 Matom-step/s 302s 93.2% CPU use with 2 MPI tasks x 1 OpenMP threads 302s 302s MPI task timing breakdown: 302s Section | min time | avg time | max time |%varavg| %total 302s --------------------------------------------------------------- 302s Pair | 0.045415 | 0.045508 | 0.045601 | 0.0 | 25.20 302s Neigh | 0.020504 | 0.02062 | 0.020736 | 0.1 | 11.42 302s Comm | 0.053092 | 0.053237 | 0.053383 | 0.1 | 29.48 302s Output | 0.00033544 | 0.00049508 | 0.00065472 | 0.0 | 0.27 302s Modify | 0.032732 | 0.032791 | 0.032849 | 0.0 | 18.16 302s Other | | 0.02793 | | | 15.47 302s 302s Nlocal: 210 ave 213 max 207 min 302s Histogram: 1 0 0 0 0 0 0 0 0 1 302s Nghost: 50.5 ave 51 max 50 min 302s Histogram: 1 0 0 0 0 0 0 0 0 1 302s Neighs: 480.5 ave 492 max 469 min 302s Histogram: 1 0 0 0 0 0 0 0 0 1 302s 302s Total # of neighbors = 961 302s Ave neighs/atom = 2.2880952 302s Neighbor list builds = 964 302s Dangerous builds = 0 302s Total wall time: 0:00:00 302s LAMMPS (7 Feb 2024 - Update 1) 302s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 302s using 1 OpenMP thread(s) per MPI task 302s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 302s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 302s 1 by 1 by 1 MPI processor grid 302s Created 420 atoms 302s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 302s create_atoms CPU = 0.000 seconds 302s 60 atoms in group lower 302s 60 atoms in group upper 302s 120 atoms in group boundary 302s 300 atoms in group flow 302s Setting atom values ... 302s 60 settings made for type 302s Setting atom values ... 302s 60 settings made for type 302s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 302s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 302s Neighbor list info ... 302s update: every = 1 steps, delay = 5 steps, check = yes 302s max neighbors/atom: 2000, page size: 100000 302s master list distance cutoff = 1.42246 302s ghost atom cutoff = 1.42246 302s binsize = 0.71123, bins = 37 32 1 302s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 302s (1) pair lj/cut, perpetual 302s attributes: half, newton on 302s pair build: half/bin/atomonly/newton 302s stencil: half/bin/2d 302s bin: standard 302s Setting up Verlet run ... 302s Unit style : lj 302s Current step : 0 302s Time step : 0.003 302s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 302s Step Temp E_pair E_mol TotEng Press Volume 302s 0 1 0 0 0.71190476 0.52314537 571.54286 302s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 302s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 302s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 302s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 302s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 302s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 302s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 302s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 302s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 302s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 302s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 302s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 302s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 302s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 302s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 302s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 302s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 302s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 302s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 302s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 302s Loop time of 0.235612 on 1 procs for 10000 steps with 420 atoms 302s 302s Performance: 11001152.965 tau/day, 42442.720 timesteps/s, 17.826 Matom-step/s 302s 94.8% CPU use with 1 MPI tasks x 1 OpenMP threads 302s 302s MPI task timing breakdown: 302s Section | min time | avg time | max time |%varavg| %total 302s --------------------------------------------------------------- 302s Pair | 0.090498 | 0.090498 | 0.090498 | 0.0 | 38.41 302s Neigh | 0.040902 | 0.040902 | 0.040902 | 0.0 | 17.36 302s Comm | 0.015239 | 0.015239 | 0.015239 | 0.0 | 6.47 302s Output | 0.00070129 | 0.00070129 | 0.00070129 | 0.0 | 0.30 302s Modify | 0.058934 | 0.058934 | 0.058934 | 0.0 | 25.01 302s Other | | 0.02934 | | | 12.45 302s 302s Nlocal: 420 ave 420 max 420 min 302s Histogram: 1 0 0 0 0 0 0 0 0 0 302s Nghost: 46 ave 46 max 46 min 302s Histogram: 1 0 0 0 0 0 0 0 0 0 302s Neighs: 952 ave 952 max 952 min 302s Histogram: 1 0 0 0 0 0 0 0 0 0 302s 302s Total # of neighbors = 952 302s Ave neighs/atom = 2.2666667 302s Neighbor list builds = 996 302s Dangerous builds = 0 302s Total wall time: 0:00:00 302s LAMMPS (7 Feb 2024 - Update 1) 302s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 302s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 302s using 1 OpenMP thread(s) per MPI task 302s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 302s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 302s 2 by 1 by 1 MPI processor grid 302s Created 420 atoms 302s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 302s create_atoms CPU = 0.000 seconds 302s 60 atoms in group lower 302s 60 atoms in group upper 302s 120 atoms in group boundary 302s 300 atoms in group flow 302s Setting atom values ... 302s 60 settings made for type 302s Setting atom values ... 302s 60 settings made for type 302s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 302s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 302s Neighbor list info ... 302s update: every = 1 steps, delay = 5 steps, check = yes 302s max neighbors/atom: 2000, page size: 100000 302s master list distance cutoff = 1.42246 302s ghost atom cutoff = 1.42246 302s binsize = 0.71123, bins = 37 32 1 302s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 302s (1) pair lj/cut, perpetual 302s attributes: half, newton on 302s pair build: half/bin/atomonly/newton 302s stencil: half/bin/2d 302s bin: standard 302s Setting up Verlet run ... 302s Unit style : lj 302s Current step : 0 302s Time step : 0.003 302s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 302s Step Temp E_pair E_mol TotEng Press Volume 302s 0 1 0 0 0.71190476 0.52314537 571.54286 302s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 302s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 302s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 302s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 302s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 302s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 302s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 302s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 302s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 302s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 302s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 302s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 302s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 302s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 302s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 302s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 302s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 302s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 302s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 302s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 302s Loop time of 0.220206 on 2 procs for 10000 steps with 420 atoms 302s 302s Performance: 11770795.367 tau/day, 45412.019 timesteps/s, 19.073 Matom-step/s 302s 94.5% CPU use with 2 MPI tasks x 1 OpenMP threads 302s 302s MPI task timing breakdown: 302s Section | min time | avg time | max time |%varavg| %total 302s --------------------------------------------------------------- 302s Pair | 0.049483 | 0.04963 | 0.049777 | 0.1 | 22.54 302s Neigh | 0.012311 | 0.012416 | 0.012521 | 0.1 | 5.64 302s Comm | 0.051196 | 0.051552 | 0.051908 | 0.2 | 23.41 302s Output | 0.00035672 | 0.00054465 | 0.00073257 | 0.0 | 0.25 302s Modify | 0.076621 | 0.076642 | 0.076664 | 0.0 | 34.80 302s Other | | 0.02942 | | | 13.36 302s 302s Nlocal: 210 ave 213 max 207 min 302s Histogram: 1 0 0 0 0 0 0 0 0 1 302s Nghost: 50 ave 51 max 49 min 302s Histogram: 1 0 0 0 0 0 0 0 0 1 302s Neighs: 558.5 ave 573 max 544 min 302s Histogram: 1 0 0 0 0 0 0 0 0 1 302s 302s Total # of neighbors = 1117 302s Ave neighs/atom = 2.6595238 302s Neighbor list builds = 562 302s Dangerous builds = 0 302s Total wall time: 0:00:00 302s LAMMPS (7 Feb 2024 - Update 1) 302s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 302s using 1 OpenMP thread(s) per MPI task 302s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 302s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 302s 1 by 1 by 1 MPI processor grid 302s Created 420 atoms 302s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 302s create_atoms CPU = 0.000 seconds 302s 60 atoms in group lower 302s 60 atoms in group upper 302s 120 atoms in group boundary 302s 300 atoms in group flow 302s Setting atom values ... 302s 60 settings made for type 302s Setting atom values ... 302s 60 settings made for type 302s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 302s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 302s Neighbor list info ... 302s update: every = 1 steps, delay = 5 steps, check = yes 302s max neighbors/atom: 2000, page size: 100000 302s master list distance cutoff = 1.42246 302s ghost atom cutoff = 1.42246 302s binsize = 0.71123, bins = 37 32 1 302s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 302s (1) pair lj/cut, perpetual 302s attributes: half, newton on 302s pair build: half/bin/atomonly/newton 302s stencil: half/bin/2d 302s bin: standard 302s Setting up Verlet run ... 302s Unit style : lj 302s Current step : 0 302s Time step : 0.003 302s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 302s Step Temp E_pair E_mol TotEng Press Volume 302s 0 1 0 0 0.71190476 0.52314537 571.54286 302s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 302s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 302s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 302s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 302s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 302s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 302s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 302s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 302s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 302s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 302s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 302s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 302s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 302s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 302s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 302s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 302s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 302s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 302s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 302s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 302s Loop time of 0.272196 on 1 procs for 10000 steps with 420 atoms 302s 302s Performance: 9522551.676 tau/day, 36738.239 timesteps/s, 15.430 Matom-step/s 302s 94.2% CPU use with 1 MPI tasks x 1 OpenMP threads 302s 302s MPI task timing breakdown: 302s Section | min time | avg time | max time |%varavg| %total 302s --------------------------------------------------------------- 302s Pair | 0.099803 | 0.099803 | 0.099803 | 0.0 | 36.67 302s Neigh | 0.023321 | 0.023321 | 0.023321 | 0.0 | 8.57 302s Comm | 0.012443 | 0.012443 | 0.012443 | 0.0 | 4.57 302s Output | 0.00073849 | 0.00073849 | 0.00073849 | 0.0 | 0.27 302s Modify | 0.10746 | 0.10746 | 0.10746 | 0.0 | 39.48 302s Other | | 0.02843 | | | 10.44 302s 302s Nlocal: 420 ave 420 max 420 min 302s Histogram: 1 0 0 0 0 0 0 0 0 0 302s Nghost: 48 ave 48 max 48 min 302s Histogram: 1 0 0 0 0 0 0 0 0 0 302s Neighs: 1124 ave 1124 max 1124 min 302s Histogram: 1 0 0 0 0 0 0 0 0 0 302s 302s Total # of neighbors = 1124 302s Ave neighs/atom = 2.6761905 302s Neighbor list builds = 561 302s Dangerous builds = 0 302s Total wall time: 0:00:00 302s run: OK 303s autopkgtest [11:53:02]: test flow: -----------------------] 307s autopkgtest [11:53:06]: test flow: - - - - - - - - - - results - - - - - - - - - - 307s flow PASS 311s autopkgtest [11:53:10]: test friction: preparing testbed 312s Reading package lists... 313s Building dependency tree... 313s Reading state information... 313s Starting pkgProblemResolver with broken count: 0 313s Starting 2 pkgProblemResolver with broken count: 0 313s Done 314s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 322s autopkgtest [11:53:21]: test friction: [----------------------- 324s LAMMPS (7 Feb 2024 - Update 1) 324s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 324s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 324s using 1 OpenMP thread(s) per MPI task 324s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 324s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 324s 2 by 1 by 1 MPI processor grid 324s Created 750 atoms 324s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 324s create_atoms CPU = 0.000 seconds 324s Created 750 atoms 324s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 324s create_atoms CPU = 0.000 seconds 324s Created 112 atoms 324s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 324s create_atoms CPU = 0.000 seconds 324s Created 112 atoms 324s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 324s create_atoms CPU = 0.000 seconds 324s 750 atoms in group lo 324s 862 atoms in group lo 324s 750 atoms in group hi 324s 862 atoms in group hi 324s 150 atoms in group lo-fixed 324s 150 atoms in group hi-fixed 324s 300 atoms in group boundary 324s 1424 atoms in group mobile 324s Setting atom values ... 324s 150 settings made for type 324s Setting atom values ... 324s 150 settings made for type 324s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 324s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 324s Neighbor list info ... 324s update: every = 1 steps, delay = 5 steps, check = yes 324s max neighbors/atom: 2000, page size: 100000 324s master list distance cutoff = 2.8 324s ghost atom cutoff = 2.8 324s binsize = 1.4, bins = 41 31 1 324s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 324s (1) pair lj/cut, perpetual 324s attributes: half, newton on 324s pair build: half/bin/atomonly/newton 324s stencil: half/bin/2d 324s bin: standard 324s Setting up Verlet run ... 324s Unit style : lj 324s Current step : 0 324s Time step : 0.0025 324s Per MPI rank memory allocation (min/avg/max) = 2.737 | 2.737 | 2.737 Mbytes 324s Step Temp E_pair E_mol TotEng Press Volume 324s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 324s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 324s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 324s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 324s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 325s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 325s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 325s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 325s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 325s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 325s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 326s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 326s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 326s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 326s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 326s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 326s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 326s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 326s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 327s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 327s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 327s Loop time of 2.85957 on 2 procs for 20000 steps with 1724 atoms 327s 327s Performance: 1510716.510 tau/day, 6994.058 timesteps/s, 12.058 Matom-step/s 327s 98.0% CPU use with 2 MPI tasks x 1 OpenMP threads 327s 327s MPI task timing breakdown: 327s Section | min time | avg time | max time |%varavg| %total 327s --------------------------------------------------------------- 327s Pair | 1.9034 | 2.048 | 2.1926 | 10.1 | 71.62 327s Neigh | 0.10575 | 0.1167 | 0.12764 | 3.2 | 4.08 327s Comm | 0.17319 | 0.33191 | 0.49063 | 27.6 | 11.61 327s Output | 0.00049733 | 0.00077677 | 0.0010562 | 0.0 | 0.03 327s Modify | 0.21449 | 0.22775 | 0.24101 | 2.8 | 7.96 327s Other | | 0.1344 | | | 4.70 327s 327s Nlocal: 862 ave 868 max 856 min 327s Histogram: 1 0 0 0 0 0 0 0 0 1 327s Nghost: 160.5 ave 161 max 160 min 327s Histogram: 1 0 0 0 0 0 0 0 0 1 327s Neighs: 7178.5 ave 7223 max 7134 min 327s Histogram: 1 0 0 0 0 0 0 0 0 1 327s 327s Total # of neighbors = 14357 327s Ave neighs/atom = 8.3277262 327s Neighbor list builds = 716 327s Dangerous builds = 0 327s Total wall time: 0:00:02 327s LAMMPS (7 Feb 2024 - Update 1) 327s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 327s using 1 OpenMP thread(s) per MPI task 327s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 327s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 327s 1 by 1 by 1 MPI processor grid 327s Created 750 atoms 327s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 327s create_atoms CPU = 0.000 seconds 327s Created 750 atoms 327s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 327s create_atoms CPU = 0.000 seconds 327s Created 112 atoms 327s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 327s create_atoms CPU = 0.000 seconds 327s Created 112 atoms 327s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 327s create_atoms CPU = 0.000 seconds 327s 750 atoms in group lo 327s 862 atoms in group lo 327s 750 atoms in group hi 327s 862 atoms in group hi 327s 150 atoms in group lo-fixed 327s 150 atoms in group hi-fixed 327s 300 atoms in group boundary 327s 1424 atoms in group mobile 327s Setting atom values ... 327s 150 settings made for type 327s Setting atom values ... 327s 150 settings made for type 327s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 327s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 327s Neighbor list info ... 327s update: every = 1 steps, delay = 5 steps, check = yes 327s max neighbors/atom: 2000, page size: 100000 327s master list distance cutoff = 2.8 327s ghost atom cutoff = 2.8 327s binsize = 1.4, bins = 41 31 1 327s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 327s (1) pair lj/cut, perpetual 327s attributes: half, newton on 327s pair build: half/bin/atomonly/newton 327s stencil: half/bin/2d 327s bin: standard 327s Setting up Verlet run ... 327s Unit style : lj 327s Current step : 0 327s Time step : 0.0025 327s Per MPI rank memory allocation (min/avg/max) = 2.746 | 2.746 | 2.746 Mbytes 327s Step Temp E_pair E_mol TotEng Press Volume 327s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 327s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 327s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 328s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 328s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 328s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 328s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 329s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 329s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 329s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 329s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 330s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 330s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 330s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 330s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 331s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 331s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 331s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 331s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 332s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 332s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 332s Loop time of 4.97015 on 1 procs for 20000 steps with 1724 atoms 332s 332s Performance: 869189.121 tau/day, 4024.024 timesteps/s, 6.937 Matom-step/s 332s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 332s 332s MPI task timing breakdown: 332s Section | min time | avg time | max time |%varavg| %total 332s --------------------------------------------------------------- 332s Pair | 4.0816 | 4.0816 | 4.0816 | 0.0 | 82.12 332s Neigh | 0.21483 | 0.21483 | 0.21483 | 0.0 | 4.32 332s Comm | 0.053732 | 0.053732 | 0.053732 | 0.0 | 1.08 332s Output | 0.0012292 | 0.0012292 | 0.0012292 | 0.0 | 0.02 332s Modify | 0.4484 | 0.4484 | 0.4484 | 0.0 | 9.02 332s Other | | 0.1704 | | | 3.43 332s 332s Nlocal: 1724 ave 1724 max 1724 min 332s Histogram: 1 0 0 0 0 0 0 0 0 0 332s Nghost: 144 ave 144 max 144 min 332s Histogram: 1 0 0 0 0 0 0 0 0 0 332s Neighs: 14364 ave 14364 max 14364 min 332s Histogram: 1 0 0 0 0 0 0 0 0 0 332s 332s Total # of neighbors = 14364 332s Ave neighs/atom = 8.3317865 332s Neighbor list builds = 714 332s Dangerous builds = 0 332s Total wall time: 0:00:04 332s run: OK 332s autopkgtest [11:53:31]: test friction: -----------------------] 337s autopkgtest [11:53:36]: test friction: - - - - - - - - - - results - - - - - - - - - - 337s friction PASS 340s autopkgtest [11:53:39]: test hugo: preparing testbed 342s Reading package lists... 342s Building dependency tree... 342s Reading state information... 343s Starting pkgProblemResolver with broken count: 0 343s Starting 2 pkgProblemResolver with broken count: 0 343s Done 344s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 351s autopkgtest [11:53:50]: test hugo: [----------------------- 353s LAMMPS (7 Feb 2024 - Update 1) 353s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 353s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 353s using 1 OpenMP thread(s) per MPI task 353s Lattice spacing in x,y,z = 1.4142135 2 2 353s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 353s 1 by 1 by 2 MPI processor grid 353s Created 1000 atoms 353s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 353s create_atoms CPU = 0.000 seconds 353s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 353s Neighbor list info ... 353s update: every = 1 steps, delay = 0 steps, check = yes 353s max neighbors/atom: 2000, page size: 100000 353s master list distance cutoff = 1.8475372 353s ghost atom cutoff = 1.8475372 353s binsize = 0.92376862, bins = 8 11 11 353s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 353s (1) pair lj/cubic, perpetual 353s attributes: half, newton on 353s pair build: half/bin/atomonly/newton 353s stencil: half/bin/3d 353s bin: standard 353s Setting up cg style minimization ... 353s Unit style : lj 353s Current step : 0 353s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 353s (src/min.cpp:219) 353s Per MPI rank memory allocation (min/avg/max) = 3.924 | 3.924 | 3.924 Mbytes 353s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 353s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 353s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 353s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 353s Loop time of 0.0367211 on 2 procs for 134 steps with 1000 atoms 353s 353s 97.5% CPU use with 2 MPI tasks x 1 OpenMP threads 353s 353s Minimization stats: 353s Stopping criterion = force tolerance 353s Energy initial, next-to-last, final = 353s -6.29375358358574 -6.33442531515467 -6.33442531515467 353s Force two-norm initial, final = 3395.2895 5.5900884e-10 353s Force max component initial, final = 1960.2713 3.2516979e-10 353s Final line search alpha, max atom move = 1 3.2516979e-10 353s Iterations, force evaluations = 134 137 353s 353s MPI task timing breakdown: 353s Section | min time | avg time | max time |%varavg| %total 353s --------------------------------------------------------------- 353s Pair | 0.021783 | 0.023409 | 0.025034 | 1.1 | 63.75 353s Neigh | 0.00040208 | 0.00044874 | 0.0004954 | 0.0 | 1.22 353s Comm | 0.0027147 | 0.0043537 | 0.0059926 | 2.5 | 11.86 353s Output | 2.356e-05 | 3.196e-05 | 4.036e-05 | 0.0 | 0.09 353s Modify | 0 | 0 | 0 | 0.0 | 0.00 353s Other | | 0.008478 | | | 23.09 353s 353s Nlocal: 500 ave 550 max 450 min 353s Histogram: 1 0 0 0 0 0 0 0 0 1 353s Nghost: 1214 ave 1264 max 1164 min 353s Histogram: 1 0 0 0 0 0 0 0 0 1 353s Neighs: 10500 ave 11550 max 9450 min 353s Histogram: 1 0 0 0 0 0 0 0 0 1 353s 353s Total # of neighbors = 21000 353s Ave neighs/atom = 21 353s Neighbor list builds = 1 353s Dangerous builds = 0 353s System init for write_restart ... 353s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 353s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 353s using 1 OpenMP thread(s) per MPI task 353s Reading restart file ... 353s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 353s restoring atom style atomic from restart 353s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 353s 1 by 1 by 2 MPI processor grid 353s restoring pair style lj/cubic from restart 353s 1000 atoms 353s read_restart CPU = 0.000 seconds 353s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 353s Neighbor list info ... 353s update: every = 1 steps, delay = 0 steps, check = yes 353s max neighbors/atom: 2000, page size: 100000 353s master list distance cutoff = 1.7475372 353s ghost atom cutoff = 1.7475372 353s binsize = 0.87376862, bins = 8 12 12 353s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 353s (1) pair lj/cubic, perpetual 353s attributes: half, newton on 353s pair build: half/bin/atomonly/newton 353s stencil: half/bin/3d 353s bin: standard 353s Setting up Verlet run ... 353s Unit style : lj 353s Current step : 0 353s Time step : 0.001 353s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 353s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 353s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 353s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 354s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 354s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 354s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 355s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 355s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 355s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 356s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 356s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 356s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 356s Loop time of 3.18485 on 2 procs for 10000 steps with 1000 atoms 356s 356s Performance: 271284.536 tau/day, 3139.867 timesteps/s, 3.140 Matom-step/s 356s 98.8% CPU use with 2 MPI tasks x 1 OpenMP threads 356s 356s MPI task timing breakdown: 356s Section | min time | avg time | max time |%varavg| %total 356s --------------------------------------------------------------- 356s Pair | 2.1496 | 2.1866 | 2.2237 | 2.5 | 68.66 356s Neigh | 0.08954 | 0.092516 | 0.095491 | 1.0 | 2.90 356s Comm | 0.24239 | 0.28289 | 0.32338 | 7.6 | 8.88 356s Output | 0.00071025 | 0.00074073 | 0.00077121 | 0.0 | 0.02 356s Modify | 0.54401 | 0.54466 | 0.54532 | 0.1 | 17.10 356s Other | | 0.07739 | | | 2.43 356s 356s Nlocal: 500 ave 510 max 490 min 356s Histogram: 1 0 0 0 0 0 0 0 0 1 356s Nghost: 1351.5 ave 1357 max 1346 min 356s Histogram: 1 0 0 0 0 0 0 0 0 1 356s Neighs: 10160.5 ave 10780 max 9541 min 356s Histogram: 1 0 0 0 0 0 0 0 0 1 356s 356s Total # of neighbors = 20321 356s Ave neighs/atom = 20.321 356s Neighbor list builds = 194 356s Dangerous builds = 0 356s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 356s using 1 OpenMP thread(s) per MPI task 356s Reading restart file ... 356s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 356s restoring atom style atomic from restart 356s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 356s 1 by 1 by 2 MPI processor grid 356s restoring pair style lj/cubic from restart 356s 1000 atoms 356s read_restart CPU = 0.000 seconds 356s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 356s Neighbor list info ... 356s update: every = 1 steps, delay = 0 steps, check = yes 356s max neighbors/atom: 2000, page size: 100000 356s master list distance cutoff = 1.7475372 356s ghost atom cutoff = 1.7475372 356s binsize = 0.87376862, bins = 8 12 12 356s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 356s (1) pair lj/cubic, perpetual 356s attributes: half, newton on 356s pair build: half/bin/atomonly/newton 356s stencil: half/bin/3d 356s bin: standard 356s Setting up Verlet run ... 356s Unit style : lj 356s Current step : 0 356s Time step : 0.001 356s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 356s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 356s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 356s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 357s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 357s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 357s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 358s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 358s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 358s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 358s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 359s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 359s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 359s Loop time of 2.79541 on 2 procs for 10000 steps with 1000 atoms 359s 359s Performance: 309077.652 tau/day, 3577.288 timesteps/s, 3.577 Matom-step/s 359s 98.0% CPU use with 2 MPI tasks x 1 OpenMP threads 359s 359s MPI task timing breakdown: 359s Section | min time | avg time | max time |%varavg| %total 359s --------------------------------------------------------------- 359s Pair | 1.9183 | 1.9452 | 1.9721 | 1.9 | 69.59 359s Neigh | 0.0046556 | 0.0046883 | 0.0047209 | 0.0 | 0.17 359s Comm | 0.20212 | 0.22968 | 0.25724 | 5.8 | 8.22 359s Output | 0.00070665 | 0.00073351 | 0.00076037 | 0.0 | 0.03 359s Modify | 0.5359 | 0.54052 | 0.54514 | 0.6 | 19.34 359s Other | | 0.0746 | | | 2.67 359s 359s Nlocal: 500 ave 503 max 497 min 359s Histogram: 1 0 0 0 0 0 0 0 0 1 359s Nghost: 1214 ave 1217 max 1211 min 359s Histogram: 1 0 0 0 0 0 0 0 0 1 359s Neighs: 10500 ave 10560 max 10440 min 359s Histogram: 1 0 0 0 0 0 0 0 0 1 359s 359s Total # of neighbors = 21000 359s Ave neighs/atom = 21 359s Neighbor list builds = 10 359s Dangerous builds = 0 359s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 359s using 1 OpenMP thread(s) per MPI task 359s Reading restart file ... 359s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 359s restoring atom style atomic from restart 359s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 359s 1 by 1 by 2 MPI processor grid 359s restoring pair style lj/cubic from restart 359s 1000 atoms 359s read_restart CPU = 0.000 seconds 359s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 359s Neighbor list info ... 359s update: every = 1 steps, delay = 0 steps, check = yes 359s max neighbors/atom: 2000, page size: 100000 359s master list distance cutoff = 1.7475372 359s ghost atom cutoff = 1.7475372 359s binsize = 0.87376862, bins = 8 12 12 359s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 359s (1) pair lj/cubic, perpetual 359s attributes: half, newton on 359s pair build: half/bin/atomonly/newton 359s stencil: half/bin/3d 359s bin: standard 359s Setting up Verlet run ... 359s Unit style : lj 359s Current step : 0 359s Time step : 0.001 359s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 359s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 359s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 359s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 360s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 360s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 360s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 360s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 361s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 361s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 361s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 362s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 362s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 362s Loop time of 2.90745 on 2 procs for 10000 steps with 1000 atoms 362s 362s Performance: 297168.107 tau/day, 3439.446 timesteps/s, 3.439 Matom-step/s 362s 98.7% CPU use with 2 MPI tasks x 1 OpenMP threads 362s 362s MPI task timing breakdown: 362s Section | min time | avg time | max time |%varavg| %total 362s --------------------------------------------------------------- 362s Pair | 1.9672 | 1.9846 | 2.0019 | 1.2 | 68.26 362s Neigh | 0.042107 | 0.042403 | 0.042699 | 0.1 | 1.46 362s Comm | 0.2254 | 0.24306 | 0.26072 | 3.6 | 8.36 362s Output | 0.00078045 | 0.00079967 | 0.00081889 | 0.0 | 0.03 362s Modify | 0.55363 | 0.55813 | 0.56262 | 0.6 | 19.20 362s Other | | 0.07847 | | | 2.70 362s 362s Nlocal: 500 ave 503 max 497 min 362s Histogram: 1 0 0 0 0 0 0 0 0 1 362s Nghost: 1217.5 ave 1219 max 1216 min 362s Histogram: 1 0 0 0 0 0 0 0 0 1 362s Neighs: 10291 ave 10353 max 10229 min 362s Histogram: 1 0 0 0 0 0 0 0 0 1 362s 362s Total # of neighbors = 20582 362s Ave neighs/atom = 20.582 362s Neighbor list builds = 89 362s Dangerous builds = 0 362s Total wall time: 0:00:08 362s LAMMPS (7 Feb 2024 - Update 1) 362s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 362s using 1 OpenMP thread(s) per MPI task 362s Lattice spacing in x,y,z = 1.4142135 2 2 362s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 362s 1 by 1 by 1 MPI processor grid 362s Created 1000 atoms 362s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 362s create_atoms CPU = 0.000 seconds 362s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 362s Neighbor list info ... 362s update: every = 1 steps, delay = 0 steps, check = yes 362s max neighbors/atom: 2000, page size: 100000 362s master list distance cutoff = 1.8475372 362s ghost atom cutoff = 1.8475372 362s binsize = 0.92376862, bins = 8 11 11 362s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 362s (1) pair lj/cubic, perpetual 362s attributes: half, newton on 362s pair build: half/bin/atomonly/newton 362s stencil: half/bin/3d 362s bin: standard 362s Setting up cg style minimization ... 362s Unit style : lj 362s Current step : 0 362s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 362s (src/min.cpp:219) 362s Per MPI rank memory allocation (min/avg/max) = 3.934 | 3.934 | 3.934 Mbytes 362s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 362s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 362s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 362s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 362s Loop time of 0.0631568 on 1 procs for 134 steps with 1000 atoms 362s 362s 98.6% CPU use with 1 MPI tasks x 1 OpenMP threads 362s 362s Minimization stats: 362s Stopping criterion = force tolerance 362s Energy initial, next-to-last, final = 362s -6.29375358358557 -6.33442531515503 -6.33442531515503 362s Force two-norm initial, final = 3395.2895 5.5740327e-10 362s Force max component initial, final = 1960.2713 3.2730334e-10 362s Final line search alpha, max atom move = 1 3.2730334e-10 362s Iterations, force evaluations = 134 137 362s 362s MPI task timing breakdown: 362s Section | min time | avg time | max time |%varavg| %total 362s --------------------------------------------------------------- 362s Pair | 0.049411 | 0.049411 | 0.049411 | 0.0 | 78.24 362s Neigh | 0.00084825 | 0.00084825 | 0.00084825 | 0.0 | 1.34 362s Comm | 0.0013412 | 0.0013412 | 0.0013412 | 0.0 | 2.12 362s Output | 5.7361e-05 | 5.7361e-05 | 5.7361e-05 | 0.0 | 0.09 362s Modify | 0 | 0 | 0 | 0.0 | 0.00 362s Other | | 0.0115 | | | 18.21 362s 362s Nlocal: 1000 ave 1000 max 1000 min 362s Histogram: 1 0 0 0 0 0 0 0 0 0 362s Nghost: 1724 ave 1724 max 1724 min 362s Histogram: 1 0 0 0 0 0 0 0 0 0 362s Neighs: 21000 ave 21000 max 21000 min 362s Histogram: 1 0 0 0 0 0 0 0 0 0 362s 362s Total # of neighbors = 21000 362s Ave neighs/atom = 21 362s Neighbor list builds = 1 362s Dangerous builds = 0 362s System init for write_restart ... 362s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 362s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 362s using 1 OpenMP thread(s) per MPI task 362s Reading restart file ... 362s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 362s restoring atom style atomic from restart 362s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 362s 1 by 1 by 1 MPI processor grid 362s restoring pair style lj/cubic from restart 362s 1000 atoms 362s read_restart CPU = 0.000 seconds 362s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 362s Neighbor list info ... 362s update: every = 1 steps, delay = 0 steps, check = yes 362s max neighbors/atom: 2000, page size: 100000 362s master list distance cutoff = 1.7475372 362s ghost atom cutoff = 1.7475372 362s binsize = 0.87376862, bins = 8 12 12 362s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 362s (1) pair lj/cubic, perpetual 362s attributes: half, newton on 362s pair build: half/bin/atomonly/newton 362s stencil: half/bin/3d 362s bin: standard 362s Setting up Verlet run ... 362s Unit style : lj 362s Current step : 0 362s Time step : 0.001 362s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 362s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 362s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 363s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 363s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 364s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 364s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 365s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 365s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 366s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 366s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 367s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 368s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 368s Loop time of 5.43364 on 1 procs for 10000 steps with 1000 atoms 368s 368s Performance: 159009.449 tau/day, 1840.387 timesteps/s, 1.840 Matom-step/s 368s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 368s 368s MPI task timing breakdown: 368s Section | min time | avg time | max time |%varavg| %total 368s --------------------------------------------------------------- 368s Pair | 4.3943 | 4.3943 | 4.3943 | 0.0 | 80.87 368s Neigh | 0.17516 | 0.17516 | 0.17516 | 0.0 | 3.22 368s Comm | 0.11009 | 0.11009 | 0.11009 | 0.0 | 2.03 368s Output | 0.00084797 | 0.00084797 | 0.00084797 | 0.0 | 0.02 368s Modify | 0.66805 | 0.66805 | 0.66805 | 0.0 | 12.29 368s Other | | 0.08522 | | | 1.57 368s 368s Nlocal: 1000 ave 1000 max 1000 min 368s Histogram: 1 0 0 0 0 0 0 0 0 0 368s Nghost: 1886 ave 1886 max 1886 min 368s Histogram: 1 0 0 0 0 0 0 0 0 0 368s Neighs: 20874 ave 20874 max 20874 min 368s Histogram: 1 0 0 0 0 0 0 0 0 0 368s 368s Total # of neighbors = 20874 368s Ave neighs/atom = 20.874 368s Neighbor list builds = 188 368s Dangerous builds = 0 368s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 368s using 1 OpenMP thread(s) per MPI task 368s Reading restart file ... 368s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 368s restoring atom style atomic from restart 368s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 368s 1 by 1 by 1 MPI processor grid 368s restoring pair style lj/cubic from restart 368s 1000 atoms 368s read_restart CPU = 0.000 seconds 368s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 368s Neighbor list info ... 368s update: every = 1 steps, delay = 0 steps, check = yes 368s max neighbors/atom: 2000, page size: 100000 368s master list distance cutoff = 1.7475372 368s ghost atom cutoff = 1.7475372 368s binsize = 0.87376862, bins = 8 12 12 368s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 368s (1) pair lj/cubic, perpetual 368s attributes: half, newton on 368s pair build: half/bin/atomonly/newton 368s stencil: half/bin/3d 368s bin: standard 368s Setting up Verlet run ... 368s Unit style : lj 368s Current step : 0 368s Time step : 0.001 368s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 368s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 368s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 368s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 368s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 369s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 369s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 370s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 370s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 371s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 371s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 372s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 372s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 372s Loop time of 4.79721 on 1 procs for 10000 steps with 1000 atoms 372s 372s Performance: 180104.818 tau/day, 2084.547 timesteps/s, 2.085 Matom-step/s 372s 98.9% CPU use with 1 MPI tasks x 1 OpenMP threads 372s 372s MPI task timing breakdown: 372s Section | min time | avg time | max time |%varavg| %total 372s --------------------------------------------------------------- 372s Pair | 3.9461 | 3.9461 | 3.9461 | 0.0 | 82.26 372s Neigh | 0.010149 | 0.010149 | 0.010149 | 0.0 | 0.21 372s Comm | 0.097804 | 0.097804 | 0.097804 | 0.0 | 2.04 372s Output | 0.00083229 | 0.00083229 | 0.00083229 | 0.0 | 0.02 372s Modify | 0.66087 | 0.66087 | 0.66087 | 0.0 | 13.78 372s Other | | 0.08147 | | | 1.70 372s 372s Nlocal: 1000 ave 1000 max 1000 min 372s Histogram: 1 0 0 0 0 0 0 0 0 0 372s Nghost: 1724 ave 1724 max 1724 min 372s Histogram: 1 0 0 0 0 0 0 0 0 0 372s Neighs: 21000 ave 21000 max 21000 min 372s Histogram: 1 0 0 0 0 0 0 0 0 0 372s 372s Total # of neighbors = 21000 372s Ave neighs/atom = 21 372s Neighbor list builds = 11 372s Dangerous builds = 0 372s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 372s using 1 OpenMP thread(s) per MPI task 372s Reading restart file ... 372s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 372s restoring atom style atomic from restart 372s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 372s 1 by 1 by 1 MPI processor grid 372s restoring pair style lj/cubic from restart 372s 1000 atoms 372s read_restart CPU = 0.000 seconds 372s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 372s Neighbor list info ... 372s update: every = 1 steps, delay = 0 steps, check = yes 372s max neighbors/atom: 2000, page size: 100000 372s master list distance cutoff = 1.7475372 372s ghost atom cutoff = 1.7475372 372s binsize = 0.87376862, bins = 8 12 12 372s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 372s (1) pair lj/cubic, perpetual 372s attributes: half, newton on 372s pair build: half/bin/atomonly/newton 372s stencil: half/bin/3d 372s bin: standard 372s Setting up Verlet run ... 372s Unit style : lj 372s Current step : 0 372s Time step : 0.001 372s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 372s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 372s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 373s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 373s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 374s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 374s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 375s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 375s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 376s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 376s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 377s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 377s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 377s Loop time of 4.92431 on 1 procs for 10000 steps with 1000 atoms 377s 377s Performance: 175456.191 tau/day, 2030.743 timesteps/s, 2.031 Matom-step/s 377s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 377s 377s MPI task timing breakdown: 377s Section | min time | avg time | max time |%varavg| %total 377s --------------------------------------------------------------- 377s Pair | 4.0054 | 4.0054 | 4.0054 | 0.0 | 81.34 377s Neigh | 0.088396 | 0.088396 | 0.088396 | 0.0 | 1.80 377s Comm | 0.097743 | 0.097743 | 0.097743 | 0.0 | 1.98 377s Output | 0.00083973 | 0.00083973 | 0.00083973 | 0.0 | 0.02 377s Modify | 0.6525 | 0.6525 | 0.6525 | 0.0 | 13.25 377s Other | | 0.07945 | | | 1.61 377s 377s Nlocal: 1000 ave 1000 max 1000 min 377s Histogram: 1 0 0 0 0 0 0 0 0 0 377s Nghost: 1724 ave 1724 max 1724 min 377s Histogram: 1 0 0 0 0 0 0 0 0 0 377s Neighs: 20654 ave 20654 max 20654 min 377s Histogram: 1 0 0 0 0 0 0 0 0 0 377s 377s Total # of neighbors = 20654 377s Ave neighs/atom = 20.654 377s Neighbor list builds = 94 377s Dangerous builds = 0 377s Total wall time: 0:00:15 377s run: OK 378s autopkgtest [11:54:17]: test hugo: -----------------------] 382s autopkgtest [11:54:21]: test hugo: - - - - - - - - - - results - - - - - - - - - - 382s hugo PASS 385s autopkgtest [11:54:24]: test command1: preparing testbed 409s autopkgtest [11:54:48]: testbed dpkg architecture: armhf 410s autopkgtest [11:54:49]: testbed apt version: 3.0.0 414s autopkgtest [11:54:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 416s autopkgtest [11:54:55]: testbed release detected to be: questing 424s autopkgtest [11:55:03]: updating testbed package index (apt update) 426s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 426s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 426s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 426s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 426s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.6 kB] 426s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [155 kB] 426s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1655 kB] 427s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [170 kB] 427s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1235 kB] 427s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.7 kB] 427s Get:11 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 427s Get:12 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 427s Get:13 http://ftpmaster.internal/ubuntu questing/main Sources [1398 kB] 427s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 427s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [15.0 MB] 428s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 431s Fetched 43.1 MB in 5s (8262 kB/s) 432s Reading package lists... 438s autopkgtest [11:55:17]: upgrading testbed (apt dist-upgrade and autopurge) 440s Reading package lists... 440s Building dependency tree... 440s Reading state information... 441s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 441s Starting 2 pkgProblemResolver with broken count: 0 441s Done 441s Entering ResolveByKeep 442s 442s Calculating upgrade... 442s The following packages will be upgraded: 442s base-files debianutils distro-info-data dpkg dpkg-dev ed fwupd htop 442s libdpkg-perl libftdi1-2 libfwupd3 libnftnl11 libnpth0t64 libnvme1t64 442s libsensors-config libsensors5 liburcu8t64 libzstd1 motd-news-config nano 442s python3-lazr.restfulclient ubuntu-pro-client ubuntu-pro-client-l10n usb.ids 442s zstd 443s 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 443s Need to get 6620 kB of archives. 443s After this operation, 3533 kB disk space will be freed. 443s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 443s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 443s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf debianutils armhf 5.22 [92.2 kB] 443s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 443s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main armhf libzstd1 armhf 1.5.7+dfsg-1 [271 kB] 443s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 443s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 443s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 443s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 443s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 443s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf libnftnl11 armhf 1.2.9-1 [53.3 kB] 443s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 443s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 443s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 443s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 443s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 443s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 443s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 443s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 443s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 443s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 443s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 443s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 443s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 443s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main armhf zstd armhf 1.5.7+dfsg-1 [722 kB] 444s Fetched 6620 kB in 1s (7411 kB/s) 444s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 444s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 444s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 444s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 444s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 444s Setting up base-files (13.7ubuntu1) ... 444s Installing new version of config file /etc/issue ... 444s Installing new version of config file /etc/issue.net ... 444s Installing new version of config file /etc/lsb-release ... 445s motd-news.service is a disabled or a static unit not running, not starting it. 445s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 445s Preparing to unpack .../debianutils_5.22_armhf.deb ... 445s Unpacking debianutils (5.22) over (5.21) ... 445s Setting up debianutils (5.22) ... 445s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 445s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 445s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 445s Setting up dpkg (1.22.18ubuntu3) ... 445s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 445s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_armhf.deb ... 445s Unpacking libzstd1:armhf (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 445s Setting up libzstd1:armhf (1.5.7+dfsg-1) ... 446s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 446s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 446s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 446s Setting up libnpth0t64:armhf (1.8-3) ... 446s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 446s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 446s Unpacking distro-info-data (0.64) over (0.63) ... 446s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 446s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 446s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 446s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 446s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 446s Unpacking ed (1.21.1-1) over (1.21-1) ... 446s Preparing to unpack .../04-libnftnl11_1.2.9-1_armhf.deb ... 446s Unpacking libnftnl11:armhf (1.2.9-1) over (1.2.8-1) ... 446s Preparing to unpack .../05-libsensors-config_1%3a3.6.2-2_all.deb ... 446s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 446s Preparing to unpack .../06-libsensors5_1%3a3.6.2-2_armhf.deb ... 446s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 446s Preparing to unpack .../07-liburcu8t64_0.15.2-2_armhf.deb ... 446s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 446s Preparing to unpack .../08-nano_8.4-1_armhf.deb ... 446s Unpacking nano (8.4-1) over (8.3-1) ... 446s Preparing to unpack .../09-usb.ids_2025.04.01-1_all.deb ... 446s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 446s Preparing to unpack .../10-dpkg-dev_1.22.18ubuntu3_all.deb ... 446s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 446s Preparing to unpack .../11-libdpkg-perl_1.22.18ubuntu3_all.deb ... 446s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 446s Preparing to unpack .../12-fwupd_2.0.8-3_armhf.deb ... 446s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 447s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 447s Preparing to unpack .../13-libfwupd3_2.0.8-3_armhf.deb ... 447s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 447s Preparing to unpack .../14-htop_3.4.1-4_armhf.deb ... 447s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 447s Preparing to unpack .../15-libftdi1-2_1.5-10_armhf.deb ... 447s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 447s Preparing to unpack .../16-libnvme1t64_1.13-2_armhf.deb ... 447s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 447s Preparing to unpack .../17-python3-lazr.restfulclient_0.14.6-3_all.deb ... 447s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 447s Preparing to unpack .../18-zstd_1.5.7+dfsg-1_armhf.deb ... 447s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 447s Setting up motd-news-config (13.7ubuntu1) ... 447s Setting up liburcu8t64:armhf (0.15.2-2) ... 447s Setting up distro-info-data (0.64) ... 447s Setting up htop (3.4.1-4) ... 447s Setting up libsensors-config (1:3.6.2-2) ... 447s Installing new version of config file /etc/sensors3.conf ... 447s Setting up libnftnl11:armhf (1.2.9-1) ... 447s Setting up libfwupd3:armhf (2.0.8-3) ... 447s Setting up libftdi1-2:armhf (1.5-10) ... 447s Setting up libnvme1t64 (1.13-2) ... 447s Setting up ed (1.21.1-1) ... 447s Setting up usb.ids (2025.04.01-1) ... 447s Setting up libsensors5:armhf (1:3.6.2-2) ... 447s Setting up libdpkg-perl (1.22.18ubuntu3) ... 447s Setting up nano (8.4-1) ... 447s Installing new version of config file /etc/nanorc ... 447s Setting up python3-lazr.restfulclient (0.14.6-3) ... 447s Setting up ubuntu-pro-client (35.1ubuntu0) ... 447s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 447s 447s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 447s 447s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 447s 449s Setting up zstd (1.5.7+dfsg-1) ... 449s Setting up fwupd (2.0.8-3) ... 449s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 449s fwupd.service is a disabled or a static unit not running, not starting it. 449s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 449s Setting up dpkg-dev (1.22.18ubuntu3) ... 449s Processing triggers for dbus (1.16.2-2ubuntu1) ... 449s Processing triggers for install-info (7.1.1-1) ... 449s Processing triggers for libc-bin (2.41-6ubuntu1) ... 450s Processing triggers for man-db (2.13.0-1) ... 451s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 451s Processing triggers for initramfs-tools (0.147ubuntu1) ... 454s Reading package lists... 454s Building dependency tree... 454s Reading state information... 454s Starting pkgProblemResolver with broken count: 0 454s Starting 2 pkgProblemResolver with broken count: 0 454s Done 455s Solving dependencies... 455s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 457s autopkgtest [11:55:36]: rebooting testbed after setup commands that affected boot 525s Reading package lists... 526s Building dependency tree... 526s Reading state information... 526s Starting pkgProblemResolver with broken count: 0 526s Starting 2 pkgProblemResolver with broken count: 0 526s Done 527s The following NEW packages will be installed: 527s autoconf automake autotools-dev cpp cpp-14 cpp-14-arm-linux-gnueabihf 527s cpp-arm-linux-gnueabihf fontconfig-config fonts-dejavu-core 527s fonts-dejavu-mono g++ g++-14 g++-14-arm-linux-gnueabihf 527s g++-arm-linux-gnueabihf gcc gcc-14 gcc-14-arm-linux-gnueabihf 527s gcc-arm-linux-gnueabihf gfortran-14 gfortran-14-arm-linux-gnueabihf 527s hwloc-nox libaec0 libasan8 libblas3 libc-dev-bin libc6-dev libcairo2 527s libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 libfftw3-double3 527s libfontconfig1 libfreetype6 libgbm1 libgcc-14-dev libgfortran-14-dev 527s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 527s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhwloc-dev 527s libhwloc15 libisl23 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26 527s libkim-api2 liblammps-dev liblammps0t64 liblapack3 liblerc4 libllvm19 527s libltdl-dev libltdl7 libmpc3 libmpich-dev libmpich12 libnetcdf22 libnuma-dev 527s libogg0 libopengl0 libpixman-1-0 libproj25 libpython3.13 libsharpyuv0 527s libslurm42t64 libstdc++-14-dev libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 527s libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libubsan1 libvoro++1 527s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 527s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 527s libxcb-sync1 libxcb-xfixes0 libxft2 libxrender1 libxshmfence1 libxss1 527s libxxf86vm1 linux-libc-dev m4 mesa-libgallium mpi-default-bin 527s mpi-default-dev mpich proj-data python3-lammps rpcsvc-proto x11-common 527s 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. 527s Need to get 155 MB of archives. 527s After this operation, 521 MB of additional disk space will be used. 527s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf m4 armhf 1.4.19-7 [238 kB] 527s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf autoconf all 2.72-3ubuntu1 [383 kB] 527s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf autotools-dev all 20220109.1 [44.9 kB] 527s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf automake all 1:1.17-3ubuntu1 [572 kB] 527s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf libisl23 armhf 0.27-1 [546 kB] 527s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 527s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [9221 kB] 528s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf cpp-14 armhf 14.2.0-19ubuntu2 [1032 B] 528s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [5578 B] 528s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf cpp armhf 4:14.2.0-1ubuntu1 [22.4 kB] 528s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 528s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 528s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig-config armhf 2.15.0-2.2ubuntu1 [37.9 kB] 528s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf libcc1-0 armhf 15-20250404-0ubuntu1 [43.3 kB] 528s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libgomp1 armhf 15-20250404-0ubuntu1 [128 kB] 528s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf libasan8 armhf 15-20250404-0ubuntu1 [2951 kB] 528s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libubsan1 armhf 15-20250404-0ubuntu1 [1188 kB] 528s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libgcc-14-dev armhf 14.2.0-19ubuntu2 [897 kB] 528s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [18.0 MB] 528s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf gcc-14 armhf 14.2.0-19ubuntu2 [510 kB] 528s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf gcc-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1218 B] 528s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf gcc armhf 4:14.2.0-1ubuntu1 [5004 B] 528s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libc-dev-bin armhf 2.41-6ubuntu1 [21.7 kB] 528s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf linux-libc-dev armhf 6.14.0-15.15 [1687 kB] 528s Get:25 http://ftpmaster.internal/ubuntu questing/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 528s Get:26 http://ftpmaster.internal/ubuntu questing/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 528s Get:27 http://ftpmaster.internal/ubuntu questing/main armhf libc6-dev armhf 2.41-6ubuntu1 [1396 kB] 528s Get:28 http://ftpmaster.internal/ubuntu questing/main armhf libstdc++-14-dev armhf 14.2.0-19ubuntu2 [2576 kB] 529s Get:29 http://ftpmaster.internal/ubuntu questing/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [10.5 MB] 529s Get:30 http://ftpmaster.internal/ubuntu questing/main armhf g++-14 armhf 14.2.0-19ubuntu2 [23.0 kB] 529s Get:31 http://ftpmaster.internal/ubuntu questing/main armhf g++-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [966 B] 529s Get:32 http://ftpmaster.internal/ubuntu questing/main armhf g++ armhf 4:14.2.0-1ubuntu1 [1084 B] 529s Get:33 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran5 armhf 15-20250404-0ubuntu1 [331 kB] 529s Get:34 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran-14-dev armhf 14.2.0-19ubuntu2 [370 kB] 529s Get:35 http://ftpmaster.internal/ubuntu questing/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [9763 kB] 529s Get:36 http://ftpmaster.internal/ubuntu questing/main armhf gfortran-14 armhf 14.2.0-19ubuntu2 [14.2 kB] 529s Get:37 http://ftpmaster.internal/ubuntu questing/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 529s Get:38 http://ftpmaster.internal/ubuntu questing/main armhf libblas3 armhf 3.12.1-2 [132 kB] 529s Get:39 http://ftpmaster.internal/ubuntu questing/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 529s Get:40 http://ftpmaster.internal/ubuntu questing/main armhf libfontconfig1 armhf 2.15.0-2.2ubuntu1 [114 kB] 529s Get:41 http://ftpmaster.internal/ubuntu questing/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 529s Get:42 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 529s Get:43 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 529s Get:44 http://ftpmaster.internal/ubuntu questing/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 529s Get:45 http://ftpmaster.internal/ubuntu questing/main armhf libcairo2 armhf 1.18.4-1 [483 kB] 529s Get:46 http://ftpmaster.internal/ubuntu questing/main armhf libdeflate0 armhf 1.23-2 [38.7 kB] 529s Get:47 http://ftpmaster.internal/ubuntu questing/universe armhf libdouble-conversion3 armhf 3.3.1-1 [39.1 kB] 529s Get:48 http://ftpmaster.internal/ubuntu questing/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build1 [369 kB] 529s Get:49 http://ftpmaster.internal/ubuntu questing/main armhf libwayland-server0 armhf 1.23.1-3 [30.3 kB] 529s Get:50 http://ftpmaster.internal/ubuntu questing/main armhf libllvm19 armhf 1:19.1.7-3ubuntu1 [27.8 MB] 530s Get:51 http://ftpmaster.internal/ubuntu questing/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 530s Get:52 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 530s Get:53 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 530s Get:54 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 530s Get:55 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 530s Get:56 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 530s Get:57 http://ftpmaster.internal/ubuntu questing/main armhf libxshmfence1 armhf 1.3.3-1 [4948 B] 530s Get:58 http://ftpmaster.internal/ubuntu questing/main armhf mesa-libgallium armhf 25.0.3-1ubuntu2 [8260 kB] 530s Get:59 http://ftpmaster.internal/ubuntu questing/main armhf libgbm1 armhf 25.0.3-1ubuntu2 [29.0 kB] 530s Get:60 http://ftpmaster.internal/ubuntu questing/main armhf libvulkan1 armhf 1.4.304.0-1 [127 kB] 530s Get:61 http://ftpmaster.internal/ubuntu questing/main armhf libgl1-mesa-dri armhf 25.0.3-1ubuntu2 [32.0 kB] 530s Get:62 http://ftpmaster.internal/ubuntu questing/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 530s Get:63 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 530s Get:64 http://ftpmaster.internal/ubuntu questing/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 530s Get:65 http://ftpmaster.internal/ubuntu questing/main armhf libglx-mesa0 armhf 25.0.3-1ubuntu2 [120 kB] 530s Get:66 http://ftpmaster.internal/ubuntu questing/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 530s Get:67 http://ftpmaster.internal/ubuntu questing/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 530s Get:68 http://ftpmaster.internal/ubuntu questing/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB] 530s Get:69 http://ftpmaster.internal/ubuntu questing/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 530s Get:70 http://ftpmaster.internal/ubuntu questing/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 530s Get:71 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 530s Get:72 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB] 530s Get:73 http://ftpmaster.internal/ubuntu questing/universe armhf libhwloc15 armhf 2.12.0-1 [147 kB] 530s Get:74 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 530s Get:75 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 530s Get:76 http://ftpmaster.internal/ubuntu questing/main armhf libjsoncpp26 armhf 1.9.6-3 [75.5 kB] 530s Get:77 http://ftpmaster.internal/ubuntu questing/universe armhf libkim-api2 armhf 2.3.0-1ubuntu1 [566 kB] 530s Get:78 http://ftpmaster.internal/ubuntu questing/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 530s Get:79 http://ftpmaster.internal/ubuntu questing/universe armhf libmpich12 armhf 4.2.1-5 [1574 kB] 530s Get:80 http://ftpmaster.internal/ubuntu questing/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB] 530s Get:81 http://ftpmaster.internal/ubuntu questing/main armhf libpython3.13 armhf 3.13.3-1 [2082 kB] 530s Get:82 http://ftpmaster.internal/ubuntu questing/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 530s Get:83 http://ftpmaster.internal/ubuntu questing/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB] 530s Get:84 http://ftpmaster.internal/ubuntu questing/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 530s Get:85 http://ftpmaster.internal/ubuntu questing/universe armhf proj-data all 9.5.1-1 [7924 kB] 531s Get:86 http://ftpmaster.internal/ubuntu questing/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 531s Get:87 http://ftpmaster.internal/ubuntu questing/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 531s Get:88 http://ftpmaster.internal/ubuntu questing/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 531s Get:89 http://ftpmaster.internal/ubuntu questing/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 531s Get:90 http://ftpmaster.internal/ubuntu questing/main armhf libtiff6 armhf 4.7.0-3ubuntu1 [184 kB] 531s Get:91 http://ftpmaster.internal/ubuntu questing/universe armhf libproj25 armhf 9.5.1-1 [1331 kB] 531s Get:92 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbbind-2-5 armhf 2022.0.0-2 [13.8 kB] 531s Get:93 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbmalloc2 armhf 2022.0.0-2 [47.0 kB] 531s Get:94 http://ftpmaster.internal/ubuntu questing/universe armhf libtbb12 armhf 2022.0.0-2 [80.8 kB] 531s Get:95 http://ftpmaster.internal/ubuntu questing/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 531s Get:96 http://ftpmaster.internal/ubuntu questing/main armhf libtheoradec1 armhf 1.2.0~alpha1+dfsg-6 [45.8 kB] 531s Get:97 http://ftpmaster.internal/ubuntu questing/main armhf libtheoraenc1 armhf 1.2.0~alpha1+dfsg-6 [91.8 kB] 531s Get:98 http://ftpmaster.internal/ubuntu questing/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 531s Get:99 http://ftpmaster.internal/ubuntu questing/main armhf x11-common all 1:7.7+23ubuntu4 [21.8 kB] 531s Get:100 http://ftpmaster.internal/ubuntu questing/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 531s Get:101 http://ftpmaster.internal/ubuntu questing/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 531s Get:102 http://ftpmaster.internal/ubuntu questing/universe armhf libvtk9.3 armhf 9.3.0+dfsg1-4ubuntu1 [21.9 MB] 532s Get:103 http://ftpmaster.internal/ubuntu questing/universe armhf liblammps0t64 armhf 20240207+dfsg-3build3 [6801 kB] 532s Get:104 http://ftpmaster.internal/ubuntu questing/main armhf libnuma-dev armhf 2.0.18-1build1 [35.0 kB] 532s Get:105 http://ftpmaster.internal/ubuntu questing/main armhf libltdl7 armhf 2.5.4-4 [39.8 kB] 532s Get:106 http://ftpmaster.internal/ubuntu questing/main armhf libltdl-dev armhf 2.5.4-4 [169 kB] 533s Get:107 http://ftpmaster.internal/ubuntu questing/universe armhf libhwloc-dev armhf 2.12.0-1 [247 kB] 533s Get:108 http://ftpmaster.internal/ubuntu questing/universe armhf hwloc-nox armhf 2.12.0-1 [213 kB] 533s Get:109 http://ftpmaster.internal/ubuntu questing/universe armhf libslurm42t64 armhf 24.11.3-2 [769 kB] 533s Get:110 http://ftpmaster.internal/ubuntu questing/universe armhf mpich armhf 4.2.1-5 [214 kB] 533s Get:111 http://ftpmaster.internal/ubuntu questing/universe armhf libmpich-dev armhf 4.2.1-5 [2459 kB] 533s Get:112 http://ftpmaster.internal/ubuntu questing/universe armhf mpi-default-dev armhf 1.18 [3322 B] 533s Get:113 http://ftpmaster.internal/ubuntu questing/universe armhf liblammps-dev armhf 20240207+dfsg-3build3 [112 kB] 533s Get:114 http://ftpmaster.internal/ubuntu questing/universe armhf mpi-default-bin armhf 1.18 [2504 B] 533s Get:115 http://ftpmaster.internal/ubuntu questing/universe armhf python3-lammps armhf 20240207+dfsg-3build3 [70.5 kB] 533s Fetched 155 MB in 6s (26.8 MB/s) 533s Selecting previously unselected package m4. 533s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63951 files and directories currently installed.) 533s Preparing to unpack .../000-m4_1.4.19-7_armhf.deb ... 533s Unpacking m4 (1.4.19-7) ... 533s Selecting previously unselected package autoconf. 533s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 533s Unpacking autoconf (2.72-3ubuntu1) ... 533s Selecting previously unselected package autotools-dev. 533s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 533s Unpacking autotools-dev (20220109.1) ... 533s Selecting previously unselected package automake. 533s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 533s Unpacking automake (1:1.17-3ubuntu1) ... 533s Selecting previously unselected package libisl23:armhf. 533s Preparing to unpack .../004-libisl23_0.27-1_armhf.deb ... 533s Unpacking libisl23:armhf (0.27-1) ... 533s Selecting previously unselected package libmpc3:armhf. 533s Preparing to unpack .../005-libmpc3_1.3.1-1build2_armhf.deb ... 533s Unpacking libmpc3:armhf (1.3.1-1build2) ... 533s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 534s Preparing to unpack .../006-cpp-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 534s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 534s Selecting previously unselected package cpp-14. 534s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_armhf.deb ... 534s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 534s Selecting previously unselected package cpp-arm-linux-gnueabihf. 534s Preparing to unpack .../008-cpp-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 534s Unpacking cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 534s Selecting previously unselected package cpp. 534s Preparing to unpack .../009-cpp_4%3a14.2.0-1ubuntu1_armhf.deb ... 534s Unpacking cpp (4:14.2.0-1ubuntu1) ... 534s Selecting previously unselected package fonts-dejavu-mono. 534s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 534s Unpacking fonts-dejavu-mono (2.37-8) ... 534s Selecting previously unselected package fonts-dejavu-core. 534s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 534s Unpacking fonts-dejavu-core (2.37-8) ... 534s Selecting previously unselected package fontconfig-config. 534s Preparing to unpack .../012-fontconfig-config_2.15.0-2.2ubuntu1_armhf.deb ... 534s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 534s Selecting previously unselected package libcc1-0:armhf. 534s Preparing to unpack .../013-libcc1-0_15-20250404-0ubuntu1_armhf.deb ... 534s Unpacking libcc1-0:armhf (15-20250404-0ubuntu1) ... 534s Selecting previously unselected package libgomp1:armhf. 534s Preparing to unpack .../014-libgomp1_15-20250404-0ubuntu1_armhf.deb ... 534s Unpacking libgomp1:armhf (15-20250404-0ubuntu1) ... 534s Selecting previously unselected package libasan8:armhf. 534s Preparing to unpack .../015-libasan8_15-20250404-0ubuntu1_armhf.deb ... 534s Unpacking libasan8:armhf (15-20250404-0ubuntu1) ... 534s Selecting previously unselected package libubsan1:armhf. 534s Preparing to unpack .../016-libubsan1_15-20250404-0ubuntu1_armhf.deb ... 534s Unpacking libubsan1:armhf (15-20250404-0ubuntu1) ... 534s Selecting previously unselected package libgcc-14-dev:armhf. 535s Preparing to unpack .../017-libgcc-14-dev_14.2.0-19ubuntu2_armhf.deb ... 535s Unpacking libgcc-14-dev:armhf (14.2.0-19ubuntu2) ... 535s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 535s Preparing to unpack .../018-gcc-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 535s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 535s Selecting previously unselected package gcc-14. 535s Preparing to unpack .../019-gcc-14_14.2.0-19ubuntu2_armhf.deb ... 535s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 535s Selecting previously unselected package gcc-arm-linux-gnueabihf. 535s Preparing to unpack .../020-gcc-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 535s Unpacking gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 535s Selecting previously unselected package gcc. 535s Preparing to unpack .../021-gcc_4%3a14.2.0-1ubuntu1_armhf.deb ... 535s Unpacking gcc (4:14.2.0-1ubuntu1) ... 535s Selecting previously unselected package libc-dev-bin. 535s Preparing to unpack .../022-libc-dev-bin_2.41-6ubuntu1_armhf.deb ... 535s Unpacking libc-dev-bin (2.41-6ubuntu1) ... 535s Selecting previously unselected package linux-libc-dev:armhf. 535s Preparing to unpack .../023-linux-libc-dev_6.14.0-15.15_armhf.deb ... 535s Unpacking linux-libc-dev:armhf (6.14.0-15.15) ... 536s Selecting previously unselected package libcrypt-dev:armhf. 536s Preparing to unpack .../024-libcrypt-dev_1%3a4.4.38-1_armhf.deb ... 536s Unpacking libcrypt-dev:armhf (1:4.4.38-1) ... 536s Selecting previously unselected package rpcsvc-proto. 536s Preparing to unpack .../025-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 536s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 536s Selecting previously unselected package libc6-dev:armhf. 536s Preparing to unpack .../026-libc6-dev_2.41-6ubuntu1_armhf.deb ... 536s Unpacking libc6-dev:armhf (2.41-6ubuntu1) ... 536s Selecting previously unselected package libstdc++-14-dev:armhf. 536s Preparing to unpack .../027-libstdc++-14-dev_14.2.0-19ubuntu2_armhf.deb ... 536s Unpacking libstdc++-14-dev:armhf (14.2.0-19ubuntu2) ... 536s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 536s Preparing to unpack .../028-g++-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 536s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 536s Selecting previously unselected package g++-14. 536s Preparing to unpack .../029-g++-14_14.2.0-19ubuntu2_armhf.deb ... 536s Unpacking g++-14 (14.2.0-19ubuntu2) ... 536s Selecting previously unselected package g++-arm-linux-gnueabihf. 536s Preparing to unpack .../030-g++-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 536s Unpacking g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 536s Selecting previously unselected package g++. 536s Preparing to unpack .../031-g++_4%3a14.2.0-1ubuntu1_armhf.deb ... 536s Unpacking g++ (4:14.2.0-1ubuntu1) ... 536s Selecting previously unselected package libgfortran5:armhf. 536s Preparing to unpack .../032-libgfortran5_15-20250404-0ubuntu1_armhf.deb ... 536s Unpacking libgfortran5:armhf (15-20250404-0ubuntu1) ... 536s Selecting previously unselected package libgfortran-14-dev:armhf. 536s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-19ubuntu2_armhf.deb ... 536s Unpacking libgfortran-14-dev:armhf (14.2.0-19ubuntu2) ... 536s Selecting previously unselected package gfortran-14-arm-linux-gnueabihf. 536s Preparing to unpack .../034-gfortran-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 536s Unpacking gfortran-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 537s Selecting previously unselected package gfortran-14. 537s Preparing to unpack .../035-gfortran-14_14.2.0-19ubuntu2_armhf.deb ... 537s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 537s Selecting previously unselected package libaec0:armhf. 537s Preparing to unpack .../036-libaec0_1.1.3-1_armhf.deb ... 537s Unpacking libaec0:armhf (1.1.3-1) ... 537s Selecting previously unselected package libblas3:armhf. 537s Preparing to unpack .../037-libblas3_3.12.1-2_armhf.deb ... 537s Unpacking libblas3:armhf (3.12.1-2) ... 537s Selecting previously unselected package libfreetype6:armhf. 537s Preparing to unpack .../038-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 537s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 537s Selecting previously unselected package libfontconfig1:armhf. 537s Preparing to unpack .../039-libfontconfig1_2.15.0-2.2ubuntu1_armhf.deb ... 537s Unpacking libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 537s Selecting previously unselected package libpixman-1-0:armhf. 537s Preparing to unpack .../040-libpixman-1-0_0.44.0-3_armhf.deb ... 537s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 537s Selecting previously unselected package libxcb-render0:armhf. 537s Preparing to unpack .../041-libxcb-render0_1.17.0-2_armhf.deb ... 537s Unpacking libxcb-render0:armhf (1.17.0-2) ... 537s Selecting previously unselected package libxcb-shm0:armhf. 537s Preparing to unpack .../042-libxcb-shm0_1.17.0-2_armhf.deb ... 537s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 537s Selecting previously unselected package libxrender1:armhf. 537s Preparing to unpack .../043-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 537s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 537s Selecting previously unselected package libcairo2:armhf. 537s Preparing to unpack .../044-libcairo2_1.18.4-1_armhf.deb ... 537s Unpacking libcairo2:armhf (1.18.4-1) ... 537s Selecting previously unselected package libdeflate0:armhf. 537s Preparing to unpack .../045-libdeflate0_1.23-2_armhf.deb ... 537s Unpacking libdeflate0:armhf (1.23-2) ... 537s Selecting previously unselected package libdouble-conversion3:armhf. 537s Preparing to unpack .../046-libdouble-conversion3_3.3.1-1_armhf.deb ... 537s Unpacking libdouble-conversion3:armhf (3.3.1-1) ... 537s Selecting previously unselected package libfftw3-double3:armhf. 537s Preparing to unpack .../047-libfftw3-double3_3.3.10-2fakesync1build1_armhf.deb ... 537s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 537s Selecting previously unselected package libwayland-server0:armhf. 537s Preparing to unpack .../048-libwayland-server0_1.23.1-3_armhf.deb ... 537s Unpacking libwayland-server0:armhf (1.23.1-3) ... 537s Selecting previously unselected package libllvm19:armhf. 537s Preparing to unpack .../049-libllvm19_1%3a19.1.7-3ubuntu1_armhf.deb ... 537s Unpacking libllvm19:armhf (1:19.1.7-3ubuntu1) ... 539s Selecting previously unselected package libx11-xcb1:armhf. 539s Preparing to unpack .../050-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 539s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 539s Selecting previously unselected package libxcb-dri3-0:armhf. 539s Preparing to unpack .../051-libxcb-dri3-0_1.17.0-2_armhf.deb ... 539s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 539s Selecting previously unselected package libxcb-present0:armhf. 539s Preparing to unpack .../052-libxcb-present0_1.17.0-2_armhf.deb ... 539s Unpacking libxcb-present0:armhf (1.17.0-2) ... 539s Selecting previously unselected package libxcb-randr0:armhf. 539s Preparing to unpack .../053-libxcb-randr0_1.17.0-2_armhf.deb ... 539s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 539s Selecting previously unselected package libxcb-sync1:armhf. 539s Preparing to unpack .../054-libxcb-sync1_1.17.0-2_armhf.deb ... 539s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 539s Selecting previously unselected package libxcb-xfixes0:armhf. 539s Preparing to unpack .../055-libxcb-xfixes0_1.17.0-2_armhf.deb ... 539s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 539s Selecting previously unselected package libxshmfence1:armhf. 539s Preparing to unpack .../056-libxshmfence1_1.3.3-1_armhf.deb ... 539s Unpacking libxshmfence1:armhf (1.3.3-1) ... 539s Selecting previously unselected package mesa-libgallium:armhf. 539s Preparing to unpack .../057-mesa-libgallium_25.0.3-1ubuntu2_armhf.deb ... 539s Unpacking mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 540s Selecting previously unselected package libgbm1:armhf. 540s Preparing to unpack .../058-libgbm1_25.0.3-1ubuntu2_armhf.deb ... 540s Unpacking libgbm1:armhf (25.0.3-1ubuntu2) ... 540s Selecting previously unselected package libvulkan1:armhf. 540s Preparing to unpack .../059-libvulkan1_1.4.304.0-1_armhf.deb ... 540s Unpacking libvulkan1:armhf (1.4.304.0-1) ... 540s Selecting previously unselected package libgl1-mesa-dri:armhf. 540s Preparing to unpack .../060-libgl1-mesa-dri_25.0.3-1ubuntu2_armhf.deb ... 540s Unpacking libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 540s Selecting previously unselected package libglvnd0:armhf. 540s Preparing to unpack .../061-libglvnd0_1.7.0-1build1_armhf.deb ... 540s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 540s Selecting previously unselected package libxcb-glx0:armhf. 540s Preparing to unpack .../062-libxcb-glx0_1.17.0-2_armhf.deb ... 540s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 540s Selecting previously unselected package libxxf86vm1:armhf. 540s Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 540s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 540s Selecting previously unselected package libglx-mesa0:armhf. 540s Preparing to unpack .../064-libglx-mesa0_25.0.3-1ubuntu2_armhf.deb ... 540s Unpacking libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 540s Selecting previously unselected package libglx0:armhf. 540s Preparing to unpack .../065-libglx0_1.7.0-1build1_armhf.deb ... 540s Unpacking libglx0:armhf (1.7.0-1build1) ... 540s Selecting previously unselected package libgl1:armhf. 540s Preparing to unpack .../066-libgl1_1.7.0-1build1_armhf.deb ... 540s Unpacking libgl1:armhf (1.7.0-1build1) ... 540s Selecting previously unselected package libgl2ps1.4. 540s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ... 540s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 540s Selecting previously unselected package libglew2.2:armhf. 540s Preparing to unpack .../068-libglew2.2_2.2.0-4build1_armhf.deb ... 540s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 540s Selecting previously unselected package libsz2:armhf. 540s Preparing to unpack .../069-libsz2_1.1.3-1_armhf.deb ... 540s Unpacking libsz2:armhf (1.1.3-1) ... 540s Selecting previously unselected package libhdf5-310:armhf. 540s Preparing to unpack .../070-libhdf5-310_1.14.5+repack-3_armhf.deb ... 540s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 540s Selecting previously unselected package libhdf5-hl-310:armhf. 540s Preparing to unpack .../071-libhdf5-hl-310_1.14.5+repack-3_armhf.deb ... 540s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3) ... 540s Selecting previously unselected package libhwloc15:armhf. 540s Preparing to unpack .../072-libhwloc15_2.12.0-1_armhf.deb ... 540s Unpacking libhwloc15:armhf (2.12.0-1) ... 540s Selecting previously unselected package libjpeg-turbo8:armhf. 540s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 540s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 540s Selecting previously unselected package libjpeg8:armhf. 540s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_armhf.deb ... 540s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 540s Selecting previously unselected package libjsoncpp26:armhf. 540s Preparing to unpack .../075-libjsoncpp26_1.9.6-3_armhf.deb ... 540s Unpacking libjsoncpp26:armhf (1.9.6-3) ... 540s Selecting previously unselected package libkim-api2:armhf. 540s Preparing to unpack .../076-libkim-api2_2.3.0-1ubuntu1_armhf.deb ... 540s Unpacking libkim-api2:armhf (2.3.0-1ubuntu1) ... 540s Selecting previously unselected package liblapack3:armhf. 540s Preparing to unpack .../077-liblapack3_3.12.1-2_armhf.deb ... 540s Unpacking liblapack3:armhf (3.12.1-2) ... 540s Selecting previously unselected package libmpich12:armhf. 540s Preparing to unpack .../078-libmpich12_4.2.1-5_armhf.deb ... 540s Unpacking libmpich12:armhf (4.2.1-5) ... 540s Selecting previously unselected package libnetcdf22:armhf. 541s Preparing to unpack .../079-libnetcdf22_1%3a4.9.3-1_armhf.deb ... 541s Unpacking libnetcdf22:armhf (1:4.9.3-1) ... 541s Selecting previously unselected package libpython3.13:armhf. 541s Preparing to unpack .../080-libpython3.13_3.13.3-1_armhf.deb ... 541s Unpacking libpython3.13:armhf (3.13.3-1) ... 541s Selecting previously unselected package libvoro++1. 541s Preparing to unpack .../081-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 541s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 541s Selecting previously unselected package libogg0:armhf. 541s Preparing to unpack .../082-libogg0_1.3.5-3build1_armhf.deb ... 541s Unpacking libogg0:armhf (1.3.5-3build1) ... 541s Selecting previously unselected package libopengl0:armhf. 541s Preparing to unpack .../083-libopengl0_1.7.0-1build1_armhf.deb ... 541s Unpacking libopengl0:armhf (1.7.0-1build1) ... 541s Selecting previously unselected package proj-data. 541s Preparing to unpack .../084-proj-data_9.5.1-1_all.deb ... 541s Unpacking proj-data (9.5.1-1) ... 541s Selecting previously unselected package libjbig0:armhf. 541s Preparing to unpack .../085-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 541s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 541s Selecting previously unselected package liblerc4:armhf. 541s Preparing to unpack .../086-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 541s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 541s Selecting previously unselected package libsharpyuv0:armhf. 541s Preparing to unpack .../087-libsharpyuv0_1.5.0-0.1_armhf.deb ... 541s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 541s Selecting previously unselected package libwebp7:armhf. 541s Preparing to unpack .../088-libwebp7_1.5.0-0.1_armhf.deb ... 541s Unpacking libwebp7:armhf (1.5.0-0.1) ... 541s Selecting previously unselected package libtiff6:armhf. 541s Preparing to unpack .../089-libtiff6_4.7.0-3ubuntu1_armhf.deb ... 541s Unpacking libtiff6:armhf (4.7.0-3ubuntu1) ... 541s Selecting previously unselected package libproj25:armhf. 541s Preparing to unpack .../090-libproj25_9.5.1-1_armhf.deb ... 541s Unpacking libproj25:armhf (9.5.1-1) ... 541s Selecting previously unselected package libtbbbind-2-5:armhf. 541s Preparing to unpack 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(1.18) ... 544s Setting up libtbb12:armhf (2022.0.0-2) ... 544s Setting up libcairo2:armhf (1.18.4-1) ... 544s Setting up gcc-14 (14.2.0-19ubuntu2) ... 544s Setting up libnuma-dev:armhf (2.0.18-1build1) ... 544s Setting up libgl1:armhf (1.7.0-1build1) ... 544s Setting up libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ... 544s Setting up libglew2.2:armhf (2.2.0-4build1) ... 544s Setting up cpp (4:14.2.0-1ubuntu1) ... 544s Setting up libhwloc-dev:armhf (2.12.0-1) ... 544s Setting up g++-14 (14.2.0-19ubuntu2) ... 544s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 544s Setting up g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 544s Setting up gcc (4:14.2.0-1ubuntu1) ... 544s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 544s Setting up libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 544s Setting up g++ (4:14.2.0-1ubuntu1) ... 544s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 544s Setting up liblammps0t64:armhf (20240207+dfsg-3build3) ... 544s Setting up libmpich-dev:armhf (4.2.1-5) ... 544s update-alternatives: using /usr/include/arm-linux-gnueabihf/mpich to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode 544s Setting up mpi-default-dev (1.18) ... 544s Setting up liblammps-dev (20240207+dfsg-3build3) ... 544s Setting up python3-lammps (20240207+dfsg-3build3) ... 544s Processing triggers for man-db (2.13.0-1) ... 545s Processing triggers for install-info (7.1.1-1) ... 545s Processing triggers for libc-bin (2.41-6ubuntu1) ... 598s autopkgtest [11:57:57]: test command1: cd python/examples; python3 demo.py 598s autopkgtest [11:57:57]: test command1: [----------------------- 601s LAMMPS (7 Feb 2024 - Update 1) 601s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 601s using 1 OpenMP thread(s) per MPI task 601s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 601s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 601s 1 by 1 by 1 MPI processor grid 601s Created 4000 atoms 601s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 601s create_atoms CPU = 0.002 seconds 601s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 601s Neighbor list info ... 601s update: every = 20 steps, delay = 0 steps, check = no 601s max neighbors/atom: 2000, page size: 100000 601s master list distance cutoff = 2.8 601s ghost atom cutoff = 2.8 601s binsize = 1.4, bins = 12 12 12 601s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 601s (1) pair lj/cut, perpetual 601s attributes: half, newton on 601s pair build: half/bin/atomonly/newton 601s stencil: half/bin/3d 601s bin: standard 601s Setting up Verlet run ... 601s Unit style : lj 601s Current step : 0 601s Time step : 0.005 601s Per MPI rank memory allocation (min/avg/max) = 3.513 | 3.513 | 3.513 Mbytes 601s Step Temp E_pair E_mol TotEng Press 601s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 601s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 601s Loop time of 0.253623 on 1 procs for 100 steps with 4000 atoms 601s 601s Performance: 170331.423 tau/day, 394.286 timesteps/s, 1.577 Matom-step/s 601s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 601s 601s MPI task timing breakdown: 601s Section | min time | avg time | max time |%varavg| %total 601s --------------------------------------------------------------- 601s Pair | 0.21261 | 0.21261 | 0.21261 | 0.0 | 83.83 601s Neigh | 0.029337 | 0.029337 | 0.029337 | 0.0 | 11.57 601s Comm | 0.0055653 | 0.0055653 | 0.0055653 | 0.0 | 2.19 601s Output | 8.8721e-05 | 8.8721e-05 | 8.8721e-05 | 0.0 | 0.03 601s Modify | 0.0040969 | 0.0040969 | 0.0040969 | 0.0 | 1.62 601s Other | | 0.001923 | | | 0.76 601s 601s Nlocal: 4000 ave 4000 max 4000 min 601s Histogram: 1 0 0 0 0 0 0 0 0 0 601s Nghost: 5758 ave 5758 max 5758 min 601s Histogram: 1 0 0 0 0 0 0 0 0 0 601s Neighs: 150488 ave 150488 max 150488 min 601s Histogram: 1 0 0 0 0 0 0 0 0 0 601s 601s Total # of neighbors = 150488 601s Ave neighs/atom = 37.622 601s Neighbor list builds = 5 601s Dangerous builds not checked 601s 601s Python output: 601s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 601s Temperature from compute = 0.7683848148006243 601s Energy from equal-style variable = -5.774392400140558 601s Velocity component from atom-style variable = -0.16696430269966717 601s Volume from get_thermo = 4738.213693437576 601s Natoms from get_natoms = 4000 601s Global coords from gather_atoms = 16.651271530416228 16.79001077301678 0.19047524160173676 601s Changed x[0][0] via scatter_atoms = 17.651271530416228 601s Total wall time: 0:00:00 601s autopkgtest [11:58:00]: test command1: -----------------------] 606s command1 PASS 606s autopkgtest [11:58:05]: test command1: - - - - - - - - - - results - - - - - - - - - - 610s autopkgtest [11:58:09]: @@@@@@@@@@@@@@@@@@@@ summary 610s crack PASS 610s dipole PASS 610s ellipse PASS 610s flow PASS 610s friction PASS 610s hugo PASS 610s command1 PASS