0s autopkgtest [02:19:26]: starting date and time: 2025-05-03 02:19:26+0000 0s autopkgtest [02:19:26]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [02:19:26]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0_hzdrl9/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:mpich --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mpich/4.3.0-5 -- lxd -r lxd-armhf-10.145.243.207 lxd-armhf-10.145.243.207:autopkgtest/ubuntu/questing/armhf 20s autopkgtest [02:19:46]: testbed dpkg architecture: armhf 22s autopkgtest [02:19:48]: testbed apt version: 3.0.0 26s autopkgtest [02:19:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 27s autopkgtest [02:19:53]: testbed release detected to be: None 35s autopkgtest [02:20:01]: updating testbed package index (apt update) 37s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 37s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 37s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 37s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 37s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [169 kB] 38s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1934 kB] 38s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.4 kB] 38s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [204 kB] 38s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1371 kB] 38s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.5 kB] 38s Get:11 http://ftpmaster.internal/ubuntu questing/main Sources [1390 kB] 38s Get:12 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 38s Get:13 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 38s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 38s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [15.2 MB] 39s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 42s Fetched 43.7 MB in 5s (8016 kB/s) 43s Reading package lists... 49s autopkgtest [02:20:15]: upgrading testbed (apt dist-upgrade and autopurge) 51s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 52s Starting 2 pkgProblemResolver with broken count: 0 52s Done 53s Entering ResolveByKeep 53s 53s Calculating upgrade... 54s The following packages will be upgraded: 54s base-files distro-info-data dpkg dpkg-dev ed fwupd htop libdpkg-perl 54s libftdi1-2 libfwupd3 libnpth0t64 libnvme1t64 libsensors-config libsensors5 54s liburcu8t64 motd-news-config nano ubuntu-pro-client ubuntu-pro-client-l10n 54s usb.ids 54s 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 5431 kB of archives. 54s After this operation, 3722 kB disk space will be freed. 54s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 54s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 54s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 55s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 55s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 55s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 55s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 55s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 55s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 55s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 55s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 55s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 55s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 55s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 55s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 55s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 55s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 55s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 55s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 55s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 55s Fetched 5431 kB in 1s (6908 kB/s) 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 55s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 55s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 55s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 56s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 56s Setting up base-files (13.7ubuntu1) ... 56s Installing new version of config file /etc/issue ... 56s Installing new version of config file /etc/issue.net ... 56s Installing new version of config file /etc/lsb-release ... 56s motd-news.service is a disabled or a static unit not running, not starting it. 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 56s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 56s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 57s Setting up dpkg (1.22.18ubuntu3) ... 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 57s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 57s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 57s Setting up libnpth0t64:armhf (1.8-3) ... 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 57s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 57s Unpacking distro-info-data (0.64) over (0.63) ... 57s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 57s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 57s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 58s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 58s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 58s Unpacking ed (1.21.1-1) over (1.21-1) ... 58s Preparing to unpack .../04-libsensors-config_1%3a3.6.2-2_all.deb ... 58s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 58s Preparing to unpack .../05-libsensors5_1%3a3.6.2-2_armhf.deb ... 58s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 58s Preparing to unpack .../06-liburcu8t64_0.15.2-2_armhf.deb ... 58s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 58s Preparing to unpack .../07-nano_8.4-1_armhf.deb ... 58s Unpacking nano (8.4-1) over (8.3-1) ... 58s Preparing to unpack .../08-usb.ids_2025.04.01-1_all.deb ... 58s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 58s Preparing to unpack .../09-dpkg-dev_1.22.18ubuntu3_all.deb ... 58s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 58s Preparing to unpack .../10-libdpkg-perl_1.22.18ubuntu3_all.deb ... 58s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 58s Preparing to unpack .../11-fwupd_2.0.8-3_armhf.deb ... 58s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 59s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 59s Preparing to unpack .../12-libfwupd3_2.0.8-3_armhf.deb ... 59s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 59s Preparing to unpack .../13-htop_3.4.1-4_armhf.deb ... 59s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 59s Preparing to unpack .../14-libftdi1-2_1.5-10_armhf.deb ... 59s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 59s Preparing to unpack .../15-libnvme1t64_1.13-2_armhf.deb ... 59s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 59s Setting up motd-news-config (13.7ubuntu1) ... 59s Setting up liburcu8t64:armhf (0.15.2-2) ... 59s Setting up distro-info-data (0.64) ... 59s Setting up htop (3.4.1-4) ... 59s Setting up libsensors-config (1:3.6.2-2) ... 59s Installing new version of config file /etc/sensors3.conf ... 59s Setting up libfwupd3:armhf (2.0.8-3) ... 59s Setting up libftdi1-2:armhf (1.5-10) ... 59s Setting up libnvme1t64 (1.13-2) ... 59s Setting up ed (1.21.1-1) ... 59s Setting up usb.ids (2025.04.01-1) ... 59s Setting up libsensors5:armhf (1:3.6.2-2) ... 59s Setting up libdpkg-perl (1.22.18ubuntu3) ... 59s Setting up nano (8.4-1) ... 59s Installing new version of config file /etc/nanorc ... 59s Setting up ubuntu-pro-client (35.1ubuntu0) ... 59s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 59s 59s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 59s 59s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 59s 61s Setting up fwupd (2.0.8-3) ... 61s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 61s fwupd.service is a disabled or a static unit not running, not starting it. 61s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 61s Setting up dpkg-dev (1.22.18ubuntu3) ... 61s Processing triggers for dbus (1.16.2-2ubuntu1) ... 61s Processing triggers for install-info (7.1.1-1) ... 61s Processing triggers for libc-bin (2.41-6ubuntu1) ... 62s Processing triggers for man-db (2.13.0-1) ... 63s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 63s Processing triggers for initramfs-tools (0.147ubuntu1) ... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Starting pkgProblemResolver with broken count: 0 66s Starting 2 pkgProblemResolver with broken count: 0 66s Done 67s Solving dependencies... 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s autopkgtest [02:20:35]: rebooting testbed after setup commands that affected boot 109s autopkgtest [02:21:15]: testbed running kernel: Linux 6.8.0-58-generic #60~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 28 14:48:37 UTC 2 132s autopkgtest [02:21:38]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 169s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 169s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 169s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 170s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 170s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 170s gpgv: Can't check signature: No public key 170s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 174s autopkgtest [02:22:20]: testing package lammps version 20240207+dfsg-3build3 176s autopkgtest [02:22:22]: build not needed 192s autopkgtest [02:22:38]: test crack: preparing testbed 194s Reading package lists... 194s Building dependency tree... 194s Reading state information... 194s Starting pkgProblemResolver with broken count: 0 194s Starting 2 pkgProblemResolver with broken count: 0 194s Done 195s The following NEW packages will be installed: 195s fontconfig-config fonts-dejavu-core fonts-dejavu-mono hwloc-nox lammps 195s lammps-data libaec0 libblas3 libcairo2 libdeflate0 libdouble-conversion3 195s libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 195s libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 195s libgomp1 libhdf5-310 libhdf5-hl-310 libhwloc15 libjbig0 libjpeg-turbo8 195s libjpeg8 libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 liblerc4 195s libllvm19 libmpich12 libnetcdf22 libogg0 libopengl0 libpixman-1-0 libproj25 195s libpython3.13 libsharpyuv0 libslurm42t64 libsz2 libtbb12 libtbbbind-2-5 195s libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 195s libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 195s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 195s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxrender1 libxshmfence1 195s libxss1 libxxf86vm1 mesa-libgallium mpi-default-bin mpich proj-data 195s x11-common 195s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 195s Need to get 101 MB of archives. 195s After this operation, 389 MB of additional disk space will be used. 195s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 196s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 196s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig-config armhf 2.15.0-2.2ubuntu1 [37.9 kB] 196s Get:4 http://ftpmaster.internal/ubuntu questing/universe armhf lammps-data all 20240207+dfsg-3build3 [9732 kB] 198s Get:5 http://ftpmaster.internal/ubuntu questing/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 198s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf libblas3 armhf 3.12.1-2 [132 kB] 198s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 198s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf libfontconfig1 armhf 2.15.0-2.2ubuntu1 [114 kB] 198s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 198s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 198s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 198s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 198s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf libcairo2 armhf 1.18.4-1 [483 kB] 198s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 198s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf libdouble-conversion3 armhf 3.3.1-1 [39.1 kB] 198s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf libgomp1 armhf 15-20250404-0ubuntu1 [128 kB] 198s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build1 [369 kB] 198s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libwayland-server0 armhf 1.23.1-3 [30.3 kB] 198s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libllvm19 armhf 1:19.1.7-3ubuntu1 [27.8 MB] 200s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 200s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 200s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 200s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 200s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 200s Get:25 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 200s Get:26 http://ftpmaster.internal/ubuntu questing/main armhf libxshmfence1 armhf 1.3.3-1 [4948 B] 200s Get:27 http://ftpmaster.internal/ubuntu questing/main armhf mesa-libgallium armhf 25.0.3-1ubuntu2 [8260 kB] 200s Get:28 http://ftpmaster.internal/ubuntu questing/main armhf libgbm1 armhf 25.0.3-1ubuntu2 [29.0 kB] 200s Get:29 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran5 armhf 15-20250404-0ubuntu1 [331 kB] 200s Get:30 http://ftpmaster.internal/ubuntu questing/main armhf libvulkan1 armhf 1.4.304.0-1 [127 kB] 200s Get:31 http://ftpmaster.internal/ubuntu questing/main armhf libgl1-mesa-dri armhf 25.0.3-1ubuntu2 [32.0 kB] 200s Get:32 http://ftpmaster.internal/ubuntu questing/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 200s Get:33 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 200s Get:34 http://ftpmaster.internal/ubuntu questing/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 200s Get:35 http://ftpmaster.internal/ubuntu questing/main armhf libglx-mesa0 armhf 25.0.3-1ubuntu2 [120 kB] 200s Get:36 http://ftpmaster.internal/ubuntu questing/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 200s Get:37 http://ftpmaster.internal/ubuntu questing/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 200s Get:38 http://ftpmaster.internal/ubuntu questing/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB] 200s Get:39 http://ftpmaster.internal/ubuntu questing/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 200s Get:40 http://ftpmaster.internal/ubuntu questing/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 200s Get:41 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 200s Get:42 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB] 200s Get:43 http://ftpmaster.internal/ubuntu questing/universe armhf libhwloc15 armhf 2.12.0-1 [147 kB] 200s Get:44 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 200s Get:45 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 200s Get:46 http://ftpmaster.internal/ubuntu questing/main armhf libjsoncpp26 armhf 1.9.6-3 [75.5 kB] 200s Get:47 http://ftpmaster.internal/ubuntu questing/universe armhf libkim-api2 armhf 2.3.0-1ubuntu1 [566 kB] 200s Get:48 http://ftpmaster.internal/ubuntu questing/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 200s Get:49 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf libmpich12 armhf 4.3.0-5 [1680 kB] 200s Get:50 http://ftpmaster.internal/ubuntu questing/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB] 200s Get:51 http://ftpmaster.internal/ubuntu questing/main armhf libpython3.13 armhf 3.13.3-1 [2082 kB] 200s Get:52 http://ftpmaster.internal/ubuntu questing/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 200s Get:53 http://ftpmaster.internal/ubuntu questing/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB] 200s Get:54 http://ftpmaster.internal/ubuntu questing/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 200s Get:55 http://ftpmaster.internal/ubuntu questing/universe armhf proj-data all 9.5.1-1 [7924 kB] 201s Get:56 http://ftpmaster.internal/ubuntu questing/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 201s Get:57 http://ftpmaster.internal/ubuntu questing/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 201s Get:58 http://ftpmaster.internal/ubuntu questing/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 201s Get:59 http://ftpmaster.internal/ubuntu questing/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 201s Get:60 http://ftpmaster.internal/ubuntu questing/main armhf libtiff6 armhf 4.7.0-3ubuntu1 [184 kB] 201s Get:61 http://ftpmaster.internal/ubuntu questing/universe armhf libproj25 armhf 9.5.1-1 [1331 kB] 201s Get:62 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbbind-2-5 armhf 2022.0.0-2 [13.8 kB] 201s Get:63 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbmalloc2 armhf 2022.0.0-2 [47.0 kB] 201s Get:64 http://ftpmaster.internal/ubuntu questing/universe armhf libtbb12 armhf 2022.0.0-2 [80.8 kB] 201s Get:65 http://ftpmaster.internal/ubuntu questing/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 201s Get:66 http://ftpmaster.internal/ubuntu questing/main armhf libtheoradec1 armhf 1.2.0~alpha1+dfsg-6 [45.8 kB] 201s Get:67 http://ftpmaster.internal/ubuntu questing/main armhf libtheoraenc1 armhf 1.2.0~alpha1+dfsg-6 [91.8 kB] 201s Get:68 http://ftpmaster.internal/ubuntu questing/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 201s Get:69 http://ftpmaster.internal/ubuntu questing/main armhf x11-common all 1:7.7+23ubuntu4 [21.8 kB] 201s Get:70 http://ftpmaster.internal/ubuntu questing/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 201s Get:71 http://ftpmaster.internal/ubuntu questing/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 201s Get:72 http://ftpmaster.internal/ubuntu questing/universe armhf libvtk9.3 armhf 9.3.0+dfsg1-4ubuntu1 [21.9 MB] 202s Get:73 http://ftpmaster.internal/ubuntu questing/universe armhf liblammps0t64 armhf 20240207+dfsg-3build3 [6801 kB] 202s Get:74 http://ftpmaster.internal/ubuntu questing/universe armhf libslurm42t64 armhf 24.11.3-2 [769 kB] 202s Get:75 http://ftpmaster.internal/ubuntu questing/universe armhf hwloc-nox armhf 2.12.0-1 [213 kB] 202s Get:76 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf mpich armhf 4.3.0-5 [237 kB] 202s Get:77 http://ftpmaster.internal/ubuntu questing/universe armhf mpi-default-bin armhf 1.18 [2504 B] 202s Get:78 http://ftpmaster.internal/ubuntu questing/universe armhf lammps armhf 20240207+dfsg-3build3 [14.7 kB] 203s Fetched 101 MB in 7s (14.1 MB/s) 203s Selecting previously unselected package fonts-dejavu-mono. 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63951 files and directories currently installed.) 203s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 203s Unpacking fonts-dejavu-mono (2.37-8) ... 203s Selecting previously unselected package fonts-dejavu-core. 203s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 203s Unpacking fonts-dejavu-core (2.37-8) ... 203s Selecting previously unselected package fontconfig-config. 203s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_armhf.deb ... 204s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 204s Selecting previously unselected package lammps-data. 204s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 204s Unpacking lammps-data (20240207+dfsg-3build3) ... 204s Selecting previously unselected package libaec0:armhf. 204s Preparing to unpack .../04-libaec0_1.1.3-1_armhf.deb ... 204s Unpacking libaec0:armhf (1.1.3-1) ... 204s Selecting previously unselected package libblas3:armhf. 204s Preparing to unpack .../05-libblas3_3.12.1-2_armhf.deb ... 204s Unpacking libblas3:armhf (3.12.1-2) ... 204s Selecting previously unselected package libfreetype6:armhf. 204s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 204s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 204s Selecting previously unselected package libfontconfig1:armhf. 204s Preparing to unpack .../07-libfontconfig1_2.15.0-2.2ubuntu1_armhf.deb ... 204s Unpacking libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 205s Selecting previously unselected package libpixman-1-0:armhf. 205s Preparing to unpack .../08-libpixman-1-0_0.44.0-3_armhf.deb ... 205s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 205s Selecting previously unselected package libxcb-render0:armhf. 205s Preparing to unpack .../09-libxcb-render0_1.17.0-2_armhf.deb ... 205s Unpacking libxcb-render0:armhf (1.17.0-2) ... 205s Selecting previously unselected package libxcb-shm0:armhf. 205s Preparing to unpack .../10-libxcb-shm0_1.17.0-2_armhf.deb ... 205s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 205s Selecting previously unselected package libxrender1:armhf. 205s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 205s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 205s Selecting previously unselected package libcairo2:armhf. 205s Preparing to unpack .../12-libcairo2_1.18.4-1_armhf.deb ... 205s Unpacking libcairo2:armhf (1.18.4-1) ... 205s Selecting previously unselected package libdeflate0:armhf. 205s Preparing to unpack .../13-libdeflate0_1.23-1_armhf.deb ... 205s Unpacking libdeflate0:armhf (1.23-1) ... 205s Selecting previously unselected package libdouble-conversion3:armhf. 205s Preparing to unpack .../14-libdouble-conversion3_3.3.1-1_armhf.deb ... 205s Unpacking libdouble-conversion3:armhf (3.3.1-1) ... 205s Selecting previously unselected package libgomp1:armhf. 205s Preparing to unpack .../15-libgomp1_15-20250404-0ubuntu1_armhf.deb ... 205s Unpacking libgomp1:armhf (15-20250404-0ubuntu1) ... 205s Selecting previously unselected package libfftw3-double3:armhf. 205s Preparing to unpack .../16-libfftw3-double3_3.3.10-2fakesync1build1_armhf.deb ... 205s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 205s Selecting previously unselected package libwayland-server0:armhf. 205s Preparing to unpack .../17-libwayland-server0_1.23.1-3_armhf.deb ... 205s Unpacking libwayland-server0:armhf (1.23.1-3) ... 205s Selecting previously unselected package libllvm19:armhf. 205s Preparing to unpack .../18-libllvm19_1%3a19.1.7-3ubuntu1_armhf.deb ... 205s Unpacking libllvm19:armhf (1:19.1.7-3ubuntu1) ... 206s Selecting previously unselected package libx11-xcb1:armhf. 206s Preparing to unpack .../19-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 206s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 206s Selecting previously unselected package libxcb-dri3-0:armhf. 206s Preparing to unpack .../20-libxcb-dri3-0_1.17.0-2_armhf.deb ... 206s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 206s Selecting previously unselected package libxcb-present0:armhf. 206s Preparing to unpack .../21-libxcb-present0_1.17.0-2_armhf.deb ... 206s Unpacking libxcb-present0:armhf (1.17.0-2) ... 206s Selecting previously unselected package libxcb-randr0:armhf. 206s Preparing to unpack .../22-libxcb-randr0_1.17.0-2_armhf.deb ... 206s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 206s Selecting previously unselected package libxcb-sync1:armhf. 206s Preparing to unpack .../23-libxcb-sync1_1.17.0-2_armhf.deb ... 206s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 207s Selecting previously unselected package libxcb-xfixes0:armhf. 207s Preparing to unpack .../24-libxcb-xfixes0_1.17.0-2_armhf.deb ... 207s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 207s Selecting previously unselected package libxshmfence1:armhf. 207s Preparing to unpack .../25-libxshmfence1_1.3.3-1_armhf.deb ... 207s Unpacking libxshmfence1:armhf (1.3.3-1) ... 207s Selecting previously unselected package mesa-libgallium:armhf. 207s Preparing to unpack .../26-mesa-libgallium_25.0.3-1ubuntu2_armhf.deb ... 207s Unpacking mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 207s Selecting previously unselected package libgbm1:armhf. 207s Preparing to unpack .../27-libgbm1_25.0.3-1ubuntu2_armhf.deb ... 207s Unpacking libgbm1:armhf (25.0.3-1ubuntu2) ... 207s Selecting previously unselected package libgfortran5:armhf. 207s Preparing to unpack .../28-libgfortran5_15-20250404-0ubuntu1_armhf.deb ... 207s Unpacking libgfortran5:armhf (15-20250404-0ubuntu1) ... 207s Selecting previously unselected package libvulkan1:armhf. 207s Preparing to unpack .../29-libvulkan1_1.4.304.0-1_armhf.deb ... 207s Unpacking libvulkan1:armhf (1.4.304.0-1) ... 207s Selecting previously unselected package libgl1-mesa-dri:armhf. 207s Preparing to unpack .../30-libgl1-mesa-dri_25.0.3-1ubuntu2_armhf.deb ... 207s Unpacking libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 207s Selecting previously unselected package libglvnd0:armhf. 207s Preparing to unpack .../31-libglvnd0_1.7.0-1build1_armhf.deb ... 207s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 207s Selecting previously unselected package libxcb-glx0:armhf. 207s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_armhf.deb ... 207s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 207s Selecting previously unselected package libxxf86vm1:armhf. 207s Preparing to unpack .../33-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 207s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 207s Selecting previously unselected package libglx-mesa0:armhf. 207s Preparing to unpack .../34-libglx-mesa0_25.0.3-1ubuntu2_armhf.deb ... 207s Unpacking libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 207s Selecting previously unselected package libglx0:armhf. 207s Preparing to unpack .../35-libglx0_1.7.0-1build1_armhf.deb ... 207s Unpacking libglx0:armhf (1.7.0-1build1) ... 207s Selecting previously unselected package libgl1:armhf. 207s Preparing to unpack .../36-libgl1_1.7.0-1build1_armhf.deb ... 207s Unpacking libgl1:armhf (1.7.0-1build1) ... 207s Selecting previously unselected package libgl2ps1.4. 207s Preparing to unpack .../37-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ... 207s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 207s Selecting previously unselected package libglew2.2:armhf. 207s Preparing to unpack .../38-libglew2.2_2.2.0-4build1_armhf.deb ... 207s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 207s Selecting previously unselected package libsz2:armhf. 207s Preparing to unpack .../39-libsz2_1.1.3-1_armhf.deb ... 207s Unpacking libsz2:armhf (1.1.3-1) ... 207s Selecting previously unselected package libhdf5-310:armhf. 207s Preparing to unpack .../40-libhdf5-310_1.14.5+repack-3_armhf.deb ... 207s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 208s Selecting previously unselected package libhdf5-hl-310:armhf. 208s Preparing to unpack .../41-libhdf5-hl-310_1.14.5+repack-3_armhf.deb ... 208s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3) ... 208s Selecting previously unselected package libhwloc15:armhf. 208s Preparing to unpack .../42-libhwloc15_2.12.0-1_armhf.deb ... 208s Unpacking libhwloc15:armhf (2.12.0-1) ... 208s Selecting previously unselected package libjpeg-turbo8:armhf. 208s Preparing to unpack .../43-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 208s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 208s Selecting previously unselected package libjpeg8:armhf. 208s Preparing to unpack .../44-libjpeg8_8c-2ubuntu11_armhf.deb ... 208s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 208s Selecting previously unselected package libjsoncpp26:armhf. 208s Preparing to unpack .../45-libjsoncpp26_1.9.6-3_armhf.deb ... 208s Unpacking libjsoncpp26:armhf (1.9.6-3) ... 208s Selecting previously unselected package libkim-api2:armhf. 208s Preparing to unpack .../46-libkim-api2_2.3.0-1ubuntu1_armhf.deb ... 208s Unpacking libkim-api2:armhf (2.3.0-1ubuntu1) ... 208s Selecting previously unselected package liblapack3:armhf. 208s Preparing to unpack .../47-liblapack3_3.12.1-2_armhf.deb ... 208s Unpacking liblapack3:armhf (3.12.1-2) ... 208s Selecting previously unselected package libmpich12:armhf. 208s Preparing to unpack .../48-libmpich12_4.3.0-5_armhf.deb ... 208s Unpacking libmpich12:armhf (4.3.0-5) ... 208s Selecting previously unselected package libnetcdf22:armhf. 208s Preparing to unpack .../49-libnetcdf22_1%3a4.9.3-1_armhf.deb ... 208s Unpacking libnetcdf22:armhf (1:4.9.3-1) ... 208s Selecting previously unselected package libpython3.13:armhf. 208s Preparing to unpack .../50-libpython3.13_3.13.3-1_armhf.deb ... 208s Unpacking libpython3.13:armhf (3.13.3-1) ... 208s Selecting previously unselected package libvoro++1. 208s Preparing to unpack .../51-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 208s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 208s Selecting previously unselected package libogg0:armhf. 208s Preparing to unpack .../52-libogg0_1.3.5-3build1_armhf.deb ... 208s Unpacking libogg0:armhf (1.3.5-3build1) ... 208s Selecting previously unselected package libopengl0:armhf. 208s Preparing to unpack .../53-libopengl0_1.7.0-1build1_armhf.deb ... 208s Unpacking libopengl0:armhf (1.7.0-1build1) ... 208s Selecting previously unselected package proj-data. 208s Preparing to unpack .../54-proj-data_9.5.1-1_all.deb ... 208s Unpacking proj-data (9.5.1-1) ... 208s Selecting previously unselected package libjbig0:armhf. 208s Preparing to unpack .../55-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 208s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 208s Selecting previously unselected package liblerc4:armhf. 208s Preparing to unpack .../56-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 208s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 209s Selecting previously unselected package libsharpyuv0:armhf. 209s Preparing to unpack .../57-libsharpyuv0_1.5.0-0.1_armhf.deb ... 209s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 209s Selecting previously unselected package libwebp7:armhf. 209s Preparing to unpack .../58-libwebp7_1.5.0-0.1_armhf.deb ... 209s Unpacking libwebp7:armhf (1.5.0-0.1) ... 209s Selecting previously unselected package libtiff6:armhf. 209s Preparing to unpack .../59-libtiff6_4.7.0-3ubuntu1_armhf.deb ... 209s Unpacking libtiff6:armhf (4.7.0-3ubuntu1) ... 209s Selecting previously unselected package libproj25:armhf. 209s Preparing to unpack .../60-libproj25_9.5.1-1_armhf.deb ... 209s Unpacking libproj25:armhf (9.5.1-1) ... 209s Selecting previously unselected package libtbbbind-2-5:armhf. 209s Preparing to unpack .../61-libtbbbind-2-5_2022.0.0-2_armhf.deb ... 209s Unpacking libtbbbind-2-5:armhf (2022.0.0-2) ... 209s Selecting previously unselected package libtbbmalloc2:armhf. 209s Preparing to unpack .../62-libtbbmalloc2_2022.0.0-2_armhf.deb ... 209s Unpacking libtbbmalloc2:armhf (2022.0.0-2) ... 209s Selecting previously unselected package libtbb12:armhf. 209s Preparing to unpack .../63-libtbb12_2022.0.0-2_armhf.deb ... 209s Unpacking libtbb12:armhf (2022.0.0-2) ... 209s Selecting previously unselected package libtcl8.6:armhf. 209s Preparing to unpack .../64-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 209s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 209s Selecting previously unselected package libtheoradec1:armhf. 209s Preparing to unpack .../65-libtheoradec1_1.2.0~alpha1+dfsg-6_armhf.deb ... 209s Unpacking libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ... 209s Selecting previously unselected package libtheoraenc1:armhf. 209s Preparing to unpack .../66-libtheoraenc1_1.2.0~alpha1+dfsg-6_armhf.deb ... 209s Unpacking libtheoraenc1:armhf (1.2.0~alpha1+dfsg-6) ... 209s Selecting previously unselected package libxft2:armhf. 209s Preparing to unpack .../67-libxft2_2.3.6-1build1_armhf.deb ... 209s Unpacking libxft2:armhf (2.3.6-1build1) ... 209s Selecting previously unselected package x11-common. 209s Preparing to unpack .../68-x11-common_1%3a7.7+23ubuntu4_all.deb ... 209s Unpacking x11-common (1:7.7+23ubuntu4) ... 209s Selecting previously unselected package libxss1:armhf. 209s Preparing to unpack .../69-libxss1_1%3a1.2.3-1build3_armhf.deb ... 209s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 209s Selecting previously unselected package libtk8.6:armhf. 209s Preparing to unpack .../70-libtk8.6_8.6.16-1_armhf.deb ... 209s Unpacking libtk8.6:armhf (8.6.16-1) ... 209s Selecting previously unselected package libvtk9.3:armhf. 209s Preparing to unpack .../71-libvtk9.3_9.3.0+dfsg1-4ubuntu1_armhf.deb ... 209s Unpacking libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 210s Selecting previously unselected package liblammps0t64:armhf. 210s Preparing to unpack .../72-liblammps0t64_20240207+dfsg-3build3_armhf.deb ... 210s Unpacking liblammps0t64:armhf (20240207+dfsg-3build3) ... 210s Selecting previously unselected package libslurm42t64. 210s Preparing to unpack .../73-libslurm42t64_24.11.3-2_armhf.deb ... 210s Unpacking libslurm42t64 (24.11.3-2) ... 210s Selecting previously unselected package hwloc-nox. 210s Preparing to unpack .../74-hwloc-nox_2.12.0-1_armhf.deb ... 210s Unpacking hwloc-nox (2.12.0-1) ... 211s Selecting previously unselected package mpich. 211s Preparing to unpack .../75-mpich_4.3.0-5_armhf.deb ... 211s Unpacking mpich (4.3.0-5) ... 211s Selecting previously unselected package mpi-default-bin. 211s Preparing to unpack .../76-mpi-default-bin_1.18_armhf.deb ... 211s Unpacking mpi-default-bin (1.18) ... 211s Selecting previously unselected package lammps. 211s Preparing to unpack .../77-lammps_20240207+dfsg-3build3_armhf.deb ... 211s Unpacking lammps (20240207+dfsg-3build3) ... 211s Setting up libpython3.13:armhf (3.13.3-1) ... 211s Setting up libxcb-dri3-0:armhf (1.17.0-2) ... 211s Setting up libtbbmalloc2:armhf (2022.0.0-2) ... 211s Setting up libpixman-1-0:armhf (0.44.0-3) ... 211s Setting up libllvm19:armhf (1:19.1.7-3ubuntu1) ... 211s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 211s Setting up libwayland-server0:armhf (1.23.1-3) ... 211s Setting up libx11-xcb1:armhf (2:1.8.10-2) ... 211s Setting up libdouble-conversion3:armhf (3.3.1-1) ... 211s Setting up libxcb-xfixes0:armhf (1.17.0-2) ... 211s Setting up libogg0:armhf (1.3.5-3build1) ... 211s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 211s Setting up proj-data (9.5.1-1) ... 211s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 211s Setting up lammps-data (20240207+dfsg-3build3) ... 211s Setting up libxcb-render0:armhf (1.17.0-2) ... 211s Setting up libglvnd0:armhf (1.7.0-1build1) ... 211s Setting up libxcb-glx0:armhf (1.17.0-2) ... 211s Setting up x11-common (1:7.7+23ubuntu4) ... 211s Setting up libdeflate0:armhf (1.23-1) ... 211s Setting up libxcb-shm0:armhf (1.17.0-2) ... 211s Setting up libgomp1:armhf (15-20250404-0ubuntu1) ... 211s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 211s Setting up libaec0:armhf (1.1.3-1) ... 211s Setting up libopengl0:armhf (1.7.0-1build1) ... 211s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ... 211s Setting up libxcb-present0:armhf (1.17.0-2) ... 211s Setting up libtheoraenc1:armhf (1.2.0~alpha1+dfsg-6) ... 211s Setting up libblas3:armhf (3.12.1-2) ... 211s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 211s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 211s Setting up libxcb-sync1:armhf (1.17.0-2) ... 211s Setting up libjsoncpp26:armhf (1.9.6-3) ... 211s Setting up libslurm42t64 (24.11.3-2) ... 211s Setting up fonts-dejavu-mono (2.37-8) ... 211s Setting up libhwloc15:armhf (2.12.0-1) ... 211s Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... 211s Setting up fonts-dejavu-core (2.37-8) ... 211s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 211s Setting up libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 211s Setting up libgfortran5:armhf (15-20250404-0ubuntu1) ... 211s Setting up libvulkan1:armhf (1.4.304.0-1) ... 211s Setting up libwebp7:armhf (1.5.0-0.1) ... 211s Setting up libmpich12:armhf (4.3.0-5) ... 211s Setting up libxshmfence1:armhf (1.3.3-1) ... 211s Setting up libxcb-randr0:armhf (1.17.0-2) ... 211s Setting up libxss1:armhf (1:1.2.3-1build3) ... 211s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 211s Setting up libsz2:armhf (1.1.3-1) ... 211s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 211s Setting up mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 211s Setting up liblapack3:armhf (3.12.1-2) ... 211s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 211s Setting up libgbm1:armhf (25.0.3-1ubuntu2) ... 211s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 211s Setting up libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 211s Setting up hwloc-nox (2.12.0-1) ... 211s Setting up libkim-api2:armhf (2.3.0-1ubuntu1) ... 211s Setting up libtbbbind-2-5:armhf (2022.0.0-2) ... 211s Setting up libhdf5-310:armhf (1.14.5+repack-3) ... 211s Setting up libtiff6:armhf (4.7.0-3ubuntu1) ... 211s Setting up libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 211s Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ... 211s Setting up libxft2:armhf (2.3.6-1build1) ... 211s Setting up libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 211s Setting up libglx0:armhf (1.7.0-1build1) ... 211s Setting up libproj25:armhf (9.5.1-1) ... 211s Setting up mpich (4.3.0-5) ... 211s update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode 211s update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode 211s Setting up libtk8.6:armhf (8.6.16-1) ... 211s Setting up libnetcdf22:armhf (1:4.9.3-1) ... 211s Setting up mpi-default-bin (1.18) ... 211s Setting up libtbb12:armhf (2022.0.0-2) ... 211s Setting up libcairo2:armhf (1.18.4-1) ... 211s Setting up libgl1:armhf (1.7.0-1build1) ... 211s Setting up libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ... 211s Setting up libglew2.2:armhf (2.2.0-4build1) ... 211s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 211s Setting up libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 211s Setting up liblammps0t64:armhf (20240207+dfsg-3build3) ... 211s Setting up lammps (20240207+dfsg-3build3) ... 211s Processing triggers for man-db (2.13.0-1) ... 212s Processing triggers for libc-bin (2.41-6ubuntu1) ... 220s autopkgtest [02:23:06]: test crack: [----------------------- 222s LAMMPS (7 Feb 2024 - Update 1) 222s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 222s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 222s using 1 OpenMP thread(s) per MPI task 222s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 222s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 222s 2 by 1 by 1 MPI processor grid 222s Created 8141 atoms 222s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 222s create_atoms CPU = 0.001 seconds 222s 302 atoms in group lower 222s 302 atoms in group upper 222s 604 atoms in group boundary 222s 7537 atoms in group mobile 222s 841 atoms in group leftupper 222s 841 atoms in group leftlower 222s Setting atom values ... 222s 841 settings made for type 222s Setting atom values ... 222s 841 settings made for type 222s Setting atom values ... 222s 302 settings made for type 222s Setting atom values ... 222s 302 settings made for type 222s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 222s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 222s Neighbor list info ... 222s update: every = 1 steps, delay = 5 steps, check = yes 222s max neighbors/atom: 2000, page size: 100000 222s master list distance cutoff = 2.8 222s ghost atom cutoff = 2.8 222s binsize = 1.4, bins = 80 56 1 222s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 222s (1) pair lj/cut, perpetual 222s attributes: half, newton on 222s pair build: half/bin/atomonly/newton 222s stencil: half/bin/2d 222s bin: standard 222s Setting up Verlet run ... 222s Unit style : lj 222s Current step : 0 222s Time step : 0.003 222s Per MPI rank memory allocation (min/avg/max) = 2.784 | 2.784 | 2.784 Mbytes 222s Step Temp E_pair E_mol TotEng Press Volume 222s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 222s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 222s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 222s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 222s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 222s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 222s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 222s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 223s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 223s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 223s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 223s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 223s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 223s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 223s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 223s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 224s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 224s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 224s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 224s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 224s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 224s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 224s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 225s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 225s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 225s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 225s Loop time of 3.27612 on 2 procs for 5000 steps with 8141 atoms 225s 225s Performance: 395589.570 tau/day, 1526.194 timesteps/s, 12.425 Matom-step/s 225s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 225s 225s MPI task timing breakdown: 225s Section | min time | avg time | max time |%varavg| %total 225s --------------------------------------------------------------- 225s Pair | 2.6141 | 2.6419 | 2.6697 | 1.7 | 80.64 225s Neigh | 0.12383 | 0.12669 | 0.12955 | 0.8 | 3.87 225s Comm | 0.12458 | 0.14304 | 0.16151 | 4.9 | 4.37 225s Output | 0.001139 | 0.0017449 | 0.0023509 | 1.5 | 0.05 225s Modify | 0.23148 | 0.23482 | 0.23816 | 0.7 | 7.17 225s Other | | 0.1279 | | | 3.91 225s 225s Nlocal: 4070.5 ave 4085 max 4056 min 225s Histogram: 1 0 0 0 0 0 0 0 0 1 225s Nghost: 207 ave 208 max 206 min 225s Histogram: 1 0 0 0 0 0 0 0 0 1 225s Neighs: 35700 ave 35927 max 35473 min 225s Histogram: 1 0 0 0 0 0 0 0 0 1 225s 225s Total # of neighbors = 71400 225s Ave neighs/atom = 8.7704213 225s Neighbor list builds = 106 225s Dangerous builds = 0 225s Total wall time: 0:00:03 225s LAMMPS (7 Feb 2024 - Update 1) 225s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 225s using 1 OpenMP thread(s) per MPI task 225s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 225s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 225s 1 by 1 by 1 MPI processor grid 225s Created 8141 atoms 225s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 225s create_atoms CPU = 0.002 seconds 225s 302 atoms in group lower 225s 302 atoms in group upper 225s 604 atoms in group boundary 225s 7537 atoms in group mobile 225s 841 atoms in group leftupper 225s 841 atoms in group leftlower 225s Setting atom values ... 225s 841 settings made for type 225s Setting atom values ... 225s 841 settings made for type 225s Setting atom values ... 225s 302 settings made for type 225s Setting atom values ... 225s 302 settings made for type 225s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 225s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 225s Neighbor list info ... 225s update: every = 1 steps, delay = 5 steps, check = yes 225s max neighbors/atom: 2000, page size: 100000 225s master list distance cutoff = 2.8 225s ghost atom cutoff = 2.8 225s binsize = 1.4, bins = 80 56 1 225s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 225s (1) pair lj/cut, perpetual 225s attributes: half, newton on 225s pair build: half/bin/atomonly/newton 225s stencil: half/bin/2d 225s bin: standard 225s Setting up Verlet run ... 225s Unit style : lj 225s Current step : 0 225s Time step : 0.003 225s Per MPI rank memory allocation (min/avg/max) = 2.8 | 2.8 | 2.8 Mbytes 225s Step Temp E_pair E_mol TotEng Press Volume 225s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 225s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 225s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 226s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 226s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 226s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 226s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 227s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 227s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 227s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 227s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 228s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 228s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 228s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 228s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 229s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 229s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 229s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 229s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 230s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 230s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 230s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 230s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 231s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 231s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 231s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 231s Loop time of 6.11756 on 1 procs for 5000 steps with 8141 atoms 231s 231s Performance: 211849.296 tau/day, 817.320 timesteps/s, 6.654 Matom-step/s 231s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 231s 231s MPI task timing breakdown: 231s Section | min time | avg time | max time |%varavg| %total 231s --------------------------------------------------------------- 231s Pair | 5.2092 | 5.2092 | 5.2092 | 0.0 | 85.15 231s Neigh | 0.23238 | 0.23238 | 0.23238 | 0.0 | 3.80 231s Comm | 0.017878 | 0.017878 | 0.017878 | 0.0 | 0.29 231s Output | 0.0027993 | 0.0027993 | 0.0027993 | 0.0 | 0.05 231s Modify | 0.47179 | 0.47179 | 0.47179 | 0.0 | 7.71 231s Other | | 0.1835 | | | 3.00 231s 231s Nlocal: 8141 ave 8141 max 8141 min 231s Histogram: 1 0 0 0 0 0 0 0 0 0 231s Nghost: 0 ave 0 max 0 min 231s Histogram: 1 0 0 0 0 0 0 0 0 0 231s Neighs: 71389 ave 71389 max 71389 min 231s Histogram: 1 0 0 0 0 0 0 0 0 0 231s 231s Total # of neighbors = 71389 231s Ave neighs/atom = 8.7690701 231s Neighbor list builds = 100 231s Dangerous builds = 0 231s Total wall time: 0:00:06 231s run: OK 231s autopkgtest [02:23:17]: test crack: -----------------------] 235s autopkgtest [02:23:21]: test crack: - - - - - - - - - - results - - - - - - - - - - 235s crack PASS 239s autopkgtest [02:23:25]: test dipole: preparing testbed 241s Reading package lists... 241s Building dependency tree... 241s Reading state information... 241s Starting pkgProblemResolver with broken count: 0 242s Starting 2 pkgProblemResolver with broken count: 0 242s Done 242s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 250s autopkgtest [02:23:36]: test dipole: [----------------------- 252s LAMMPS (7 Feb 2024 - Update 1) 252s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 252s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 252s using 1 OpenMP thread(s) per MPI task 252s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 252s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 252s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 252s 2 by 1 by 1 MPI processor grid 252s Created 200 atoms 252s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 252s create_atoms CPU = 0.000 seconds 252s Setting atom values ... 252s 200 settings made for mass 252s Setting atom values ... 252s 200 settings made for dipole/random 252s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 252s Neighbor list info ... 252s update: every = 1 steps, delay = 0 steps, check = yes 252s max neighbors/atom: 2000, page size: 100000 252s master list distance cutoff = 2.8 252s ghost atom cutoff = 2.8 252s binsize = 1.4, bins = 13 13 2 252s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 252s (1) pair lj/cut/dipole/cut, perpetual 252s attributes: half, newton on 252s pair build: half/bin/atomonly/newton 252s stencil: half/bin/2d 252s bin: standard 252s Setting up Verlet run ... 252s Unit style : lj 252s Current step : 0 252s Time step : 0.005 252s Per MPI rank memory allocation (min/avg/max) = 4.549 | 4.549 | 4.549 Mbytes 252s Step Temp E_pair c_erot TotEng Press 252s 0 0 -2.0965715 0 -2.0965715 -2.4759659 252s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 252s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 252s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 252s 2000 0.44906427 -2.8037479 0.24422576 -2.356929 0.15010432 252s 2500 0.46058471 -2.8143585 0.25012657 -2.3560767 -0.38282545 252s 3000 0.47344306 -2.8070454 0.22839921 -2.3359696 0.0086809905 252s 3500 0.40527008 -2.7047531 0.20199859 -2.3015094 0.28576366 252s 4000 0.45532509 -2.7724376 0.22443356 -2.3193892 -0.026546855 252s 4500 0.43501879 -2.7267497 0.20510275 -2.293906 -0.063127027 252s 5000 0.42443514 -2.745851 0.24060818 -2.3235381 -0.025742709 252s 5500 0.3839334 -2.7073937 0.24270814 -2.32538 -0.07170774 252s 6000 0.42922278 -2.7478329 0.25153908 -2.3207562 -0.47398846 252s 6500 0.45362461 -2.7967795 0.2756071 -2.345423 0.064335127 252s 7000 0.426427 -2.7100719 0.21223279 -2.2857771 0.23817765 252s 7500 0.44329907 -2.7592192 0.25431233 -2.3181366 -0.48160925 252s 8000 0.45710982 -2.746352 0.23112717 -2.2915277 0.067805988 252s 8500 0.45706146 -2.7008059 0.20546196 -2.2460298 -0.11582213 252s 9000 0.46491089 -2.7354016 0.23514028 -2.2728153 -0.25398947 252s 9500 0.44183004 -2.6848933 0.22534954 -2.2452724 -0.047314023 252s 10000 0.42741048 -2.7131911 0.27211413 -2.2879177 0.12679961 252s Loop time of 0.581864 on 2 procs for 10000 steps with 200 atoms 252s 252s Performance: 7424419.666 tau/day, 17186.157 timesteps/s, 3.437 Matom-step/s 252s 97.1% CPU use with 2 MPI tasks x 1 OpenMP threads 252s 252s MPI task timing breakdown: 252s Section | min time | avg time | max time |%varavg| %total 252s --------------------------------------------------------------- 252s Pair | 0.33217 | 0.36232 | 0.39247 | 5.0 | 62.27 252s Neigh | 0.016209 | 0.017246 | 0.018283 | 0.8 | 2.96 252s Comm | 0.10301 | 0.13377 | 0.16454 | 8.4 | 22.99 252s Output | 0.00049041 | 0.00077035 | 0.0010503 | 0.0 | 0.13 252s Modify | 0.031482 | 0.033335 | 0.035187 | 1.0 | 5.73 252s Other | | 0.03442 | | | 5.92 252s 252s Nlocal: 100 ave 106 max 94 min 252s Histogram: 1 0 0 0 0 0 0 0 0 1 252s Nghost: 118.5 ave 120 max 117 min 252s Histogram: 1 0 0 0 0 0 0 0 0 1 252s Neighs: 827.5 ave 911 max 744 min 252s Histogram: 1 0 0 0 0 0 0 0 0 1 252s 252s Total # of neighbors = 1655 252s Ave neighs/atom = 8.275 252s Neighbor list builds = 692 252s Dangerous builds = 0 252s Total wall time: 0:00:00 252s LAMMPS (7 Feb 2024 - Update 1) 252s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 252s using 1 OpenMP thread(s) per MPI task 252s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 252s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 252s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 252s 1 by 1 by 1 MPI processor grid 252s Created 200 atoms 252s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 252s create_atoms CPU = 0.000 seconds 252s Setting atom values ... 252s 200 settings made for mass 252s Setting atom values ... 252s 200 settings made for dipole/random 252s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 252s Neighbor list info ... 252s update: every = 1 steps, delay = 0 steps, check = yes 252s max neighbors/atom: 2000, page size: 100000 252s master list distance cutoff = 2.8 252s ghost atom cutoff = 2.8 252s binsize = 1.4, bins = 13 13 2 252s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 252s (1) pair lj/cut/dipole/cut, perpetual 252s attributes: half, newton on 252s pair build: half/bin/atomonly/newton 252s stencil: half/bin/2d 252s bin: standard 252s Setting up Verlet run ... 252s Unit style : lj 252s Current step : 0 252s Time step : 0.005 252s Per MPI rank memory allocation (min/avg/max) = 4.55 | 4.55 | 4.55 Mbytes 252s Step Temp E_pair c_erot TotEng Press 252s 0 0 -2.0965715 0 -2.0965715 -2.4759659 252s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 252s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 252s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 252s 2000 0.44906527 -2.8037488 0.24422567 -2.3569289 0.15010101 252s 2500 0.46052127 -2.8142136 0.25010172 -2.355995 -0.38222495 253s 3000 0.48349143 -2.8019094 0.21892648 -2.3208354 -0.021940474 253s 3500 0.42818128 -2.7407155 0.22510159 -2.3146751 -0.01916692 253s 4000 0.43447865 -2.7251092 0.21179003 -2.292803 -0.054070562 253s 4500 0.49679675 -2.7760513 0.19789317 -2.2817386 -0.01374163 253s 5000 0.45369814 -2.7436186 0.22108827 -2.2921889 0.032452862 253s 5500 0.49381571 -2.8052843 0.24840557 -2.3139377 -0.011483656 253s 6000 0.47486262 -2.762914 0.230038 -2.2904257 0.35084172 253s 6500 0.47834729 -2.7628296 0.23242786 -2.286874 -0.084199114 253s 7000 0.4554671 -2.7485479 0.25152556 -2.2953581 -0.41657484 253s 7500 0.48688446 -2.7468396 0.22672266 -2.2623895 0.19798746 253s 8000 0.42093195 -2.6889197 0.24972685 -2.2700924 -0.048022487 253s 8500 0.44505913 -2.65779 0.18787506 -2.2149561 0.23409841 253s 9000 0.48102255 -2.7186808 0.22041232 -2.2400634 0.26761374 253s 9500 0.41955498 -2.688272 0.26237731 -2.2708148 0.1556688 253s 10000 0.47397757 -2.683164 0.2078595 -2.2115563 -0.21881739 253s Loop time of 0.900456 on 1 procs for 10000 steps with 200 atoms 253s 253s Performance: 4797567.964 tau/day, 11105.481 timesteps/s, 2.221 Matom-step/s 253s 97.5% CPU use with 1 MPI tasks x 1 OpenMP threads 253s 253s MPI task timing breakdown: 253s Section | min time | avg time | max time |%varavg| %total 253s --------------------------------------------------------------- 253s Pair | 0.73057 | 0.73057 | 0.73057 | 0.0 | 81.13 253s Neigh | 0.033895 | 0.033895 | 0.033895 | 0.0 | 3.76 253s Comm | 0.046589 | 0.046589 | 0.046589 | 0.0 | 5.17 253s Output | 0.0010123 | 0.0010123 | 0.0010123 | 0.0 | 0.11 253s Modify | 0.059501 | 0.059501 | 0.059501 | 0.0 | 6.61 253s Other | | 0.02889 | | | 3.21 253s 253s Nlocal: 200 ave 200 max 200 min 253s Histogram: 1 0 0 0 0 0 0 0 0 0 253s Nghost: 166 ave 166 max 166 min 253s Histogram: 1 0 0 0 0 0 0 0 0 0 253s Neighs: 1624 ave 1624 max 1624 min 253s Histogram: 1 0 0 0 0 0 0 0 0 0 253s 253s Total # of neighbors = 1624 253s Ave neighs/atom = 8.12 253s Neighbor list builds = 703 253s Dangerous builds = 0 253s Total wall time: 0:00:00 253s run: OK 254s autopkgtest [02:23:40]: test dipole: -----------------------] 257s autopkgtest [02:23:43]: test dipole: - - - - - - - - - - results - - - - - - - - - - 257s dipole PASS 261s autopkgtest [02:23:47]: test ellipse: preparing testbed 263s Reading package lists... 263s Building dependency tree... 263s Reading state information... 263s Starting pkgProblemResolver with broken count: 0 263s Starting 2 pkgProblemResolver with broken count: 0 264s Done 264s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 272s autopkgtest [02:23:58]: test ellipse: [----------------------- 274s LAMMPS (7 Feb 2024 - Update 1) 274s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 274s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 274s using 1 OpenMP thread(s) per MPI task 274s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 274s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 274s 2 by 1 by 1 MPI processor grid 274s Created 400 atoms 274s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 274s create_atoms CPU = 0.000 seconds 274s Setting atom values ... 274s 29 settings made for type/fraction 274s Setting atom values ... 274s 371 settings made for mass 274s Setting atom values ... 274s 29 settings made for mass 274s Setting atom values ... 274s 371 settings made for shape 274s Setting atom values ... 274s 29 settings made for shape 274s Setting atom values ... 274s 400 settings made for quat/random 274s 371 atoms in group spheroid 274s 274s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 274s 274s Your simulation uses code contributions which should be cited: 274s - pair gayberne command: doi:10.1063/1.3058435 274s The log file lists these citations in BibTeX format. 274s 274s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 274s 274s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 274s Neighbor list info ... 274s update: every = 1 steps, delay = 0 steps, check = yes 274s max neighbors/atom: 2000, page size: 100000 274s master list distance cutoff = 4.8 274s ghost atom cutoff = 4.8 274s binsize = 2.4, bins = 59 59 3 274s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 274s (1) pair gayberne, perpetual 274s attributes: half, newton on 274s pair build: half/bin/atomonly/newton 274s stencil: half/bin/2d 274s bin: standard 274s Setting up Verlet run ... 274s Unit style : lj 274s Current step : 0 274s Time step : 0.002 274s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 274s Step c_rot E_pair TotEng Press Volume 274s 0 2.3158404 0 2.394 0.04788 20000 274s 100 1.7101139 0 1.7678302 0.034413192 20548.286 274s 200 2.3115592 0 2.3895743 0.04649702 20556.796 274s 300 1.831333 0 1.8931405 0.041256922 18354.646 274s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 274s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 274s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 274s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 274s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 274s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 274s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 274s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 274s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 274s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 274s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 274s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 274s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 274s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 274s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 274s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 274s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 274s Loop time of 0.434881 on 2 procs for 2000 steps with 400 atoms 274s 274s Performance: 794699.511 tau/day, 4598.956 timesteps/s, 1.840 Matom-step/s 274s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads 274s 274s MPI task timing breakdown: 274s Section | min time | avg time | max time |%varavg| %total 274s --------------------------------------------------------------- 274s Pair | 0.19967 | 0.22568 | 0.25169 | 5.5 | 51.89 274s Neigh | 0.011258 | 0.011356 | 0.011455 | 0.1 | 2.61 274s Comm | 0.043357 | 0.069081 | 0.094805 | 9.8 | 15.89 274s Output | 0.014405 | 0.014727 | 0.015049 | 0.3 | 3.39 274s Modify | 0.10035 | 0.10059 | 0.10084 | 0.1 | 23.13 274s Other | | 0.01344 | | | 3.09 274s 274s Nlocal: 200 ave 211 max 189 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s Nghost: 215 ave 217 max 213 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s Neighs: 1561 ave 1651 max 1471 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s 274s Total # of neighbors = 3122 274s Ave neighs/atom = 7.805 274s Neighbor list builds = 346 274s Dangerous builds = 0 274s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 274s Setting up Verlet run ... 274s Unit style : lj 274s Current step : 2000 274s Time step : 0.002 274s Per MPI rank memory allocation (min/avg/max) = 6.461 | 6.461 | 6.461 Mbytes 274s Step c_rot E_pair TotEng Press Volume 274s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 274s 2100 1.9040485 -3.6005672 -1.6802923 0.39862443 989.96894 275s 2200 1.8951971 -3.5921565 -1.6947175 1.0260215 989.96894 275s 2300 2.0029243 -3.7081933 -1.6838652 0.66970186 989.96894 275s 2400 2.027189 -3.7314224 -1.7100024 0.89700378 989.96894 275s 2500 2.0661215 -3.7753463 -1.702413 0.57671879 989.96894 275s 2600 2.0610733 -3.7707904 -1.7111988 0.90914683 989.96894 275s 2700 2.0505106 -3.7599067 -1.7337499 0.65660966 989.96894 275s 2800 2.1106444 -3.8219338 -1.7370714 0.55276913 989.96894 275s 2900 2.0347978 -3.7428385 -1.7135242 0.69752989 989.96894 275s 3000 2.0331089 -3.7397511 -1.7515341 0.052123917 989.96894 275s 3100 1.9983479 -3.7074978 -1.7158075 0.7551458 989.96894 275s 3200 2.1299896 -3.8449355 -1.7171591 1.055861 989.96894 275s 3300 2.079427 -3.7934717 -1.684941 1.1625179 989.96894 275s 3400 2.1499496 -3.8651326 -1.703348 0.58109397 989.96894 275s 3500 2.0901278 -3.8054829 -1.699465 1.0231781 989.96894 275s 3600 2.1041735 -3.8168043 -1.6893938 1.0813513 989.96894 275s 3700 2.0650932 -3.7777761 -1.7224926 1.3120953 989.96894 275s 3800 2.0166275 -3.7282861 -1.7416258 0.78824642 989.96894 275s 3900 2.0726099 -3.7842546 -1.7339991 0.92130013 989.96894 275s 4000 2.1298275 -3.8450909 -1.7237177 0.95785441 989.96894 275s Loop time of 0.446232 on 2 procs for 2000 steps with 400 atoms 275s 275s Performance: 774484.546 tau/day, 4481.971 timesteps/s, 1.793 Matom-step/s 275s 98.2% CPU use with 2 MPI tasks x 1 OpenMP threads 275s 275s MPI task timing breakdown: 275s Section | min time | avg time | max time |%varavg| %total 275s --------------------------------------------------------------- 275s Pair | 0.28933 | 0.29042 | 0.29151 | 0.2 | 65.08 275s Neigh | 0.0029945 | 0.0034142 | 0.0038339 | 0.7 | 0.77 275s Comm | 0.071568 | 0.072555 | 0.073542 | 0.4 | 16.26 275s Output | 0.016853 | 0.017283 | 0.017713 | 0.3 | 3.87 275s Modify | 0.040503 | 0.044796 | 0.049089 | 2.0 | 10.04 275s Other | | 0.01776 | | | 3.98 275s 275s Nlocal: 200 ave 228 max 172 min 275s Histogram: 1 0 0 0 0 0 0 0 0 1 275s Nghost: 209 ave 215 max 203 min 275s Histogram: 1 0 0 0 0 0 0 0 0 1 275s Neighs: 1639.5 ave 1963 max 1316 min 275s Histogram: 1 0 0 0 0 0 0 0 0 1 275s 275s Total # of neighbors = 3279 275s Ave neighs/atom = 8.1975 275s Neighbor list builds = 50 275s Dangerous builds = 0 275s Total wall time: 0:00:00 275s LAMMPS (7 Feb 2024 - Update 1) 275s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 275s using 1 OpenMP thread(s) per MPI task 275s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 275s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 275s 1 by 1 by 1 MPI processor grid 275s Created 400 atoms 275s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 275s create_atoms CPU = 0.001 seconds 275s Setting atom values ... 275s 29 settings made for type/fraction 275s Setting atom values ... 275s 371 settings made for mass 275s Setting atom values ... 275s 29 settings made for mass 275s Setting atom values ... 275s 371 settings made for shape 275s Setting atom values ... 275s 29 settings made for shape 275s Setting atom values ... 275s 400 settings made for quat/random 275s 371 atoms in group spheroid 275s 275s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 275s 275s Your simulation uses code contributions which should be cited: 275s - pair gayberne command: doi:10.1063/1.3058435 275s The log file lists these citations in BibTeX format. 275s 275s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 275s 275s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 275s Neighbor list info ... 275s update: every = 1 steps, delay = 0 steps, check = yes 275s max neighbors/atom: 2000, page size: 100000 275s master list distance cutoff = 4.8 275s ghost atom cutoff = 4.8 275s binsize = 2.4, bins = 59 59 3 275s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 275s (1) pair gayberne, perpetual 275s attributes: half, newton on 275s pair build: half/bin/atomonly/newton 275s stencil: half/bin/2d 275s bin: standard 275s Setting up Verlet run ... 275s Unit style : lj 275s Current step : 0 275s Time step : 0.002 275s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 275s Step c_rot E_pair TotEng Press Volume 275s 0 2.3158404 0 2.394 0.04788 20000 275s 100 1.7101139 0 1.7678302 0.034413192 20548.286 275s 200 2.3115592 0 2.3895743 0.04649702 20556.796 275s 300 1.831333 0 1.8931405 0.041256922 18354.646 275s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 275s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 275s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 275s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 275s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 275s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 275s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 275s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 275s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 275s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 275s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 276s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 276s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 276s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 276s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 276s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 276s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 276s Loop time of 0.679952 on 1 procs for 2000 steps with 400 atoms 276s 276s Performance: 508270.963 tau/day, 2941.383 timesteps/s, 1.177 Matom-step/s 276s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 276s 276s MPI task timing breakdown: 276s Section | min time | avg time | max time |%varavg| %total 276s --------------------------------------------------------------- 276s Pair | 0.45121 | 0.45121 | 0.45121 | 0.0 | 66.36 276s Neigh | 0.022359 | 0.022359 | 0.022359 | 0.0 | 3.29 276s Comm | 0.015804 | 0.015804 | 0.015804 | 0.0 | 2.32 276s Output | 0.026556 | 0.026556 | 0.026556 | 0.0 | 3.91 276s Modify | 0.15204 | 0.15204 | 0.15204 | 0.0 | 22.36 276s Other | | 0.01198 | | | 1.76 276s 276s Nlocal: 400 ave 400 max 400 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s Nghost: 276 ave 276 max 276 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s Neighs: 3122 ave 3122 max 3122 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s 276s Total # of neighbors = 3122 276s Ave neighs/atom = 7.805 276s Neighbor list builds = 346 276s Dangerous builds = 0 276s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 276s Setting up Verlet run ... 276s Unit style : lj 276s Current step : 2000 276s Time step : 0.002 276s Per MPI rank memory allocation (min/avg/max) = 6.488 | 6.488 | 6.488 Mbytes 276s Step c_rot E_pair TotEng Press Volume 276s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 276s 2100 1.9040485 -3.6005672 -1.6802923 0.39862445 989.96894 276s 2200 1.895197 -3.5921565 -1.6947175 1.0260215 989.96894 276s 2300 2.0029243 -3.7081933 -1.6838652 0.66970181 989.96894 276s 2400 2.027189 -3.7314224 -1.7100024 0.89700379 989.96894 276s 2500 2.0661215 -3.7753462 -1.702413 0.57671817 989.96894 276s 2600 2.0610736 -3.7707907 -1.7111987 0.90914701 989.96894 276s 2700 2.0505116 -3.7599078 -1.7337505 0.65660586 989.96894 276s 2800 2.1106432 -3.8219326 -1.7370705 0.55276071 989.96894 276s 2900 2.0347944 -3.7428349 -1.7135244 0.69753379 989.96894 276s 3000 2.033092 -3.739734 -1.7515318 0.05219688 989.96894 276s 3100 1.9983562 -3.707508 -1.7158135 0.75509883 989.96894 276s 3200 2.1298063 -3.8447512 -1.7171502 1.0568228 989.96894 276s 3300 2.0791428 -3.7931834 -1.6847086 1.1627829 989.96894 276s 3400 2.1498359 -3.8650337 -1.7032074 0.58032554 989.96894 276s 3500 2.0904809 -3.805739 -1.6981978 1.0208226 989.96894 276s 3600 2.1048714 -3.8174009 -1.691117 1.0550021 989.96894 276s 3700 2.0745341 -3.7874614 -1.7155849 1.3035756 989.96894 276s 3800 2.0439729 -3.7569157 -1.7364298 0.76483567 989.96894 276s 3900 2.0498921 -3.7613373 -1.7218798 1.0164212 989.96894 276s 4000 2.0584264 -3.7719072 -1.7005071 0.89500692 989.96894 276s Loop time of 0.724805 on 1 procs for 2000 steps with 400 atoms 276s 276s Performance: 476818.174 tau/day, 2759.364 timesteps/s, 1.104 Matom-step/s 276s 98.8% CPU use with 1 MPI tasks x 1 OpenMP threads 276s 276s MPI task timing breakdown: 276s Section | min time | avg time | max time |%varavg| %total 276s --------------------------------------------------------------- 276s Pair | 0.58095 | 0.58095 | 0.58095 | 0.0 | 80.15 276s Neigh | 0.0064848 | 0.0064848 | 0.0064848 | 0.0 | 0.89 276s Comm | 0.014798 | 0.014798 | 0.014798 | 0.0 | 2.04 276s Output | 0.024589 | 0.024589 | 0.024589 | 0.0 | 3.39 276s Modify | 0.087942 | 0.087942 | 0.087942 | 0.0 | 12.13 276s Other | | 0.01004 | | | 1.38 276s 276s Nlocal: 400 ave 400 max 400 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s Nghost: 284 ave 284 max 284 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s Neighs: 3286 ave 3286 max 3286 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s 276s Total # of neighbors = 3286 276s Ave neighs/atom = 8.215 276s Neighbor list builds = 50 276s Dangerous builds = 0 276s Total wall time: 0:00:01 277s LAMMPS (7 Feb 2024 - Update 1) 277s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 277s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 277s using 1 OpenMP thread(s) per MPI task 277s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 277s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 277s 2 by 1 by 1 MPI processor grid 277s Created 400 atoms 277s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 277s create_atoms CPU = 0.000 seconds 277s Setting atom values ... 277s 29 settings made for type/fraction 277s Setting atom values ... 277s 371 settings made for mass 277s Setting atom values ... 277s 29 settings made for mass 277s Setting atom values ... 277s 371 settings made for shape 277s Setting atom values ... 277s 29 settings made for shape 277s Setting atom values ... 277s 400 settings made for quat/random 277s 371 atoms in group spheroid 277s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 277s Neighbor list info ... 277s update: every = 1 steps, delay = 0 steps, check = yes 277s max neighbors/atom: 2000, page size: 100000 277s master list distance cutoff = 4.8 277s ghost atom cutoff = 4.8 277s binsize = 2.4, bins = 59 59 3 277s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 277s (1) pair resquared, perpetual 277s attributes: half, newton on 277s pair build: half/bin/atomonly/newton 277s stencil: half/bin/2d 277s bin: standard 277s Setting up Verlet run ... 277s Unit style : lj 277s Current step : 0 277s Time step : 0.002 277s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 277s Step c_rot E_pair TotEng Press Volume 277s 0 2.3158404 0 2.394 0.04788 20000 277s 100 1.7101139 0 1.7678302 0.034413192 20548.286 277s 200 2.3115592 0 2.3895743 0.04649702 20556.796 277s 300 1.831333 0 1.8931405 0.041256922 18354.646 277s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 277s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 277s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 277s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 277s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 277s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 277s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 277s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 277s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 277s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 277s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 277s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 277s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 277s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 277s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 277s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 277s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 277s Loop time of 0.636259 on 2 procs for 2000 steps with 400 atoms 277s 277s Performance: 543174.936 tau/day, 3143.373 timesteps/s, 1.257 Matom-step/s 277s 97.9% CPU use with 2 MPI tasks x 1 OpenMP threads 277s 277s MPI task timing breakdown: 277s Section | min time | avg time | max time |%varavg| %total 277s --------------------------------------------------------------- 277s Pair | 0.46297 | 0.4695 | 0.47603 | 1.0 | 73.79 277s Neigh | 0.011478 | 0.011622 | 0.011765 | 0.1 | 1.83 277s Comm | 0.032062 | 0.038617 | 0.045171 | 3.3 | 6.07 277s Output | 0.01327 | 0.013578 | 0.013886 | 0.3 | 2.13 277s Modify | 0.090753 | 0.091369 | 0.091985 | 0.2 | 14.36 277s Other | | 0.01157 | | | 1.82 277s 277s Nlocal: 200 ave 210 max 190 min 277s Histogram: 1 0 0 0 0 0 0 0 0 1 277s Nghost: 164 ave 168 max 160 min 277s Histogram: 1 0 0 0 0 0 0 0 0 1 277s Neighs: 910 ave 958 max 862 min 277s Histogram: 1 0 0 0 0 0 0 0 0 1 277s 277s Total # of neighbors = 1820 277s Ave neighs/atom = 4.55 277s Neighbor list builds = 420 277s Dangerous builds = 0 277s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 277s Setting up Verlet run ... 277s Unit style : lj 277s Current step : 2000 277s Time step : 0.002 277s Per MPI rank memory allocation (min/avg/max) = 6.452 | 6.452 | 6.452 Mbytes 277s Step c_rot E_pair TotEng Press Volume 277s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 277s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 277s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 277s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 277s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 277s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 277s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 278s 2700 2.0106221 0.13364603 2.1384766 1.1322764 1639.6982 278s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 278s 2900 1.9922852 0.15256969 2.0956529 1.2419163 1639.6982 278s 3000 1.9618081 0.18405952 2.1392907 1.3468022 1639.6982 278s 3100 1.9208141 0.22640846 2.1223515 1.6487932 1639.6982 278s 3200 1.9201454 0.22718165 2.1360381 1.5370081 1639.6982 278s 3300 2.0073185 0.13690917 2.1185875 1.1974013 1639.6982 278s 3400 2.0179674 0.12601938 2.1227813 1.0847666 1639.6982 278s 3500 1.9561087 0.18991131 2.1150364 1.337739 1639.6982 278s 3600 1.9971228 0.14756112 2.1401422 1.2026317 1639.6982 278s 3700 1.9731706 0.1723087 2.1473857 1.273159 1639.6982 278s 3800 2.0001051 0.14443379 2.0995168 1.1502317 1639.6982 278s 3900 1.9911498 0.15371621 2.1424901 1.2279921 1639.6982 278s 4000 1.9825331 0.16267827 2.0899844 1.2154927 1639.6982 278s Loop time of 0.992811 on 2 procs for 2000 steps with 400 atoms 278s 278s Performance: 348102.680 tau/day, 2014.483 timesteps/s, 805.793 katom-step/s 278s 99.7% CPU use with 2 MPI tasks x 1 OpenMP threads 278s 278s MPI task timing breakdown: 278s Section | min time | avg time | max time |%varavg| %total 278s --------------------------------------------------------------- 278s Pair | 0.80512 | 0.84681 | 0.8885 | 4.5 | 85.29 278s Neigh | 0.0023786 | 0.0024998 | 0.0026211 | 0.2 | 0.25 278s Comm | 0.029222 | 0.071069 | 0.11292 | 15.7 | 7.16 278s Output | 0.013831 | 0.014129 | 0.014427 | 0.3 | 1.42 278s Modify | 0.043394 | 0.045568 | 0.047742 | 1.0 | 4.59 278s Other | | 0.01274 | | | 1.28 278s 278s Nlocal: 200 ave 212 max 188 min 278s Histogram: 1 0 0 0 0 0 0 0 0 1 278s Nghost: 171.5 ave 173 max 170 min 278s Histogram: 1 0 0 0 0 0 0 0 0 1 278s Neighs: 880.5 ave 946 max 815 min 278s Histogram: 1 0 0 0 0 0 0 0 0 1 278s 278s Total # of neighbors = 1761 278s Ave neighs/atom = 4.4025 278s Neighbor list builds = 49 278s Dangerous builds = 0 278s Total wall time: 0:00:01 278s LAMMPS (7 Feb 2024 - Update 1) 278s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 278s using 1 OpenMP thread(s) per MPI task 278s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 278s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 278s 1 by 1 by 1 MPI processor grid 278s Created 400 atoms 278s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 278s create_atoms CPU = 0.000 seconds 278s Setting atom values ... 278s 29 settings made for type/fraction 278s Setting atom values ... 278s 371 settings made for mass 278s Setting atom values ... 278s 29 settings made for mass 278s Setting atom values ... 278s 371 settings made for shape 278s Setting atom values ... 278s 29 settings made for shape 278s Setting atom values ... 278s 400 settings made for quat/random 278s 371 atoms in group spheroid 278s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 278s Neighbor list info ... 278s update: every = 1 steps, delay = 0 steps, check = yes 278s max neighbors/atom: 2000, page size: 100000 278s master list distance cutoff = 4.8 278s ghost atom cutoff = 4.8 278s binsize = 2.4, bins = 59 59 3 278s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 278s (1) pair resquared, perpetual 278s attributes: half, newton on 278s pair build: half/bin/atomonly/newton 278s stencil: half/bin/2d 278s bin: standard 278s Setting up Verlet run ... 278s Unit style : lj 278s Current step : 0 278s Time step : 0.002 278s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 278s Step c_rot E_pair TotEng Press Volume 278s 0 2.3158404 0 2.394 0.04788 20000 278s 100 1.7101139 0 1.7678302 0.034413192 20548.286 278s 200 2.3115592 0 2.3895743 0.04649702 20556.796 278s 300 1.831333 0 1.8931405 0.041256922 18354.646 278s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 278s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 278s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 278s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 278s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 279s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 279s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 279s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 279s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 279s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 279s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 279s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 279s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 279s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 279s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 279s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 279s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 279s Loop time of 1.15074 on 1 procs for 2000 steps with 400 atoms 279s 279s Performance: 300329.097 tau/day, 1738.016 timesteps/s, 695.206 katom-step/s 279s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 279s 279s MPI task timing breakdown: 279s Section | min time | avg time | max time |%varavg| %total 279s --------------------------------------------------------------- 279s Pair | 0.93193 | 0.93193 | 0.93193 | 0.0 | 80.99 279s Neigh | 0.02293 | 0.02293 | 0.02293 | 0.0 | 1.99 279s Comm | 0.012272 | 0.012272 | 0.012272 | 0.0 | 1.07 279s Output | 0.023057 | 0.023057 | 0.023057 | 0.0 | 2.00 279s Modify | 0.15013 | 0.15013 | 0.15013 | 0.0 | 13.05 279s Other | | 0.01042 | | | 0.91 279s 279s Nlocal: 400 ave 400 max 400 min 279s Histogram: 1 0 0 0 0 0 0 0 0 0 279s Nghost: 206 ave 206 max 206 min 279s Histogram: 1 0 0 0 0 0 0 0 0 0 279s Neighs: 1820 ave 1820 max 1820 min 279s Histogram: 1 0 0 0 0 0 0 0 0 0 279s 279s Total # of neighbors = 1820 279s Ave neighs/atom = 4.55 279s Neighbor list builds = 420 279s Dangerous builds = 0 279s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 279s Setting up Verlet run ... 279s Unit style : lj 279s Current step : 2000 279s Time step : 0.002 279s Per MPI rank memory allocation (min/avg/max) = 6.479 | 6.479 | 6.479 Mbytes 279s Step c_rot E_pair TotEng Press Volume 279s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 279s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 280s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 280s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 280s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 280s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 280s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 280s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 280s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 280s 2900 1.9922852 0.15256971 2.0956529 1.2419164 1639.6982 280s 3000 1.9618081 0.18405952 2.1392906 1.3468022 1639.6982 280s 3100 1.9208145 0.22640808 2.1223513 1.6487904 1639.6982 280s 3200 1.9201455 0.22718157 2.136038 1.5370079 1639.6982 281s 3300 2.0073203 0.13690734 2.1185861 1.1973861 1639.6982 281s 3400 2.0179675 0.12601936 2.1227814 1.0847665 1639.6982 281s 3500 1.956107 0.18991303 2.1150378 1.3377467 1639.6982 281s 3600 1.9971207 0.14756338 2.1401427 1.2026439 1639.6982 281s 3700 1.9731785 0.17230049 2.1473634 1.2731222 1639.6982 281s 3800 2.0001027 0.14443629 2.0995017 1.1502317 1639.6982 281s 3900 1.9911478 0.15371832 2.1424588 1.2279852 1639.6982 281s 4000 1.9824541 0.16275998 2.0899755 1.2158078 1639.6982 281s Loop time of 1.83153 on 1 procs for 2000 steps with 400 atoms 281s 281s Performance: 188694.300 tau/day, 1091.981 timesteps/s, 436.792 katom-step/s 281s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 281s 281s MPI task timing breakdown: 281s Section | min time | avg time | max time |%varavg| %total 281s --------------------------------------------------------------- 281s Pair | 1.6931 | 1.6931 | 1.6931 | 0.0 | 92.44 281s Neigh | 0.0046835 | 0.0046835 | 0.0046835 | 0.0 | 0.26 281s Comm | 0.011526 | 0.011526 | 0.011526 | 0.0 | 0.63 281s Output | 0.023389 | 0.023389 | 0.023389 | 0.0 | 1.28 281s Modify | 0.089381 | 0.089381 | 0.089381 | 0.0 | 4.88 281s Other | | 0.009411 | | | 0.51 281s 281s Nlocal: 400 ave 400 max 400 min 281s Histogram: 1 0 0 0 0 0 0 0 0 0 281s Nghost: 215 ave 215 max 215 min 281s Histogram: 1 0 0 0 0 0 0 0 0 0 281s Neighs: 1761 ave 1761 max 1761 min 281s Histogram: 1 0 0 0 0 0 0 0 0 0 281s 281s Total # of neighbors = 1761 281s Ave neighs/atom = 4.4025 281s Neighbor list builds = 49 281s Dangerous builds = 0 281s Total wall time: 0:00:02 281s run: OK 282s autopkgtest [02:24:08]: test ellipse: -----------------------] 286s autopkgtest [02:24:12]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 286s ellipse PASS 289s autopkgtest [02:24:15]: test flow: preparing testbed 291s Reading package lists... 292s Building dependency tree... 292s Reading state information... 293s Starting pkgProblemResolver with broken count: 0 293s Starting 2 pkgProblemResolver with broken count: 0 293s Done 294s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 301s autopkgtest [02:24:27]: test flow: [----------------------- 303s LAMMPS (7 Feb 2024 - Update 1) 303s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 303s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 303s using 1 OpenMP thread(s) per MPI task 303s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 303s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 303s 2 by 1 by 1 MPI processor grid 303s Created 420 atoms 303s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 303s create_atoms CPU = 0.000 seconds 303s 60 atoms in group lower 303s 60 atoms in group upper 303s 120 atoms in group boundary 303s 300 atoms in group flow 303s Setting atom values ... 303s 60 settings made for type 303s Setting atom values ... 303s 60 settings made for type 303s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 303s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 303s Neighbor list info ... 303s update: every = 1 steps, delay = 5 steps, check = yes 303s max neighbors/atom: 2000, page size: 100000 303s master list distance cutoff = 1.42246 303s ghost atom cutoff = 1.42246 303s binsize = 0.71123, bins = 37 32 1 303s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 303s (1) pair lj/cut, perpetual 303s attributes: half, newton on 303s pair build: half/bin/atomonly/newton 303s stencil: half/bin/2d 303s bin: standard 303s Setting up Verlet run ... 303s Unit style : lj 303s Current step : 0 303s Time step : 0.003 303s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 303s Step Temp E_pair E_mol TotEng Press Volume 303s 0 1 0 0 0.71190476 0.52314537 571.54286 303s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 303s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 303s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 303s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 303s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 303s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 303s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 303s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 303s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 303s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 303s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 303s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 303s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 303s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 303s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 303s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 303s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 303s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 303s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 303s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 303s Loop time of 0.18912 on 2 procs for 10000 steps with 420 atoms 303s 303s Performance: 13705560.204 tau/day, 52876.390 timesteps/s, 22.208 Matom-step/s 303s 90.7% CPU use with 2 MPI tasks x 1 OpenMP threads 303s 303s MPI task timing breakdown: 303s Section | min time | avg time | max time |%varavg| %total 303s --------------------------------------------------------------- 303s Pair | 0.045619 | 0.046045 | 0.046471 | 0.2 | 24.35 303s Neigh | 0.021066 | 0.021139 | 0.021213 | 0.1 | 11.18 303s Comm | 0.056456 | 0.057253 | 0.058051 | 0.3 | 30.27 303s Output | 0.0003622 | 0.00068037 | 0.00099853 | 0.0 | 0.36 303s Modify | 0.033618 | 0.033912 | 0.034207 | 0.2 | 17.93 303s Other | | 0.03009 | | | 15.91 303s 303s Nlocal: 210 ave 213 max 207 min 303s Histogram: 1 0 0 0 0 0 0 0 0 1 303s Nghost: 50.5 ave 51 max 50 min 303s Histogram: 1 0 0 0 0 0 0 0 0 1 303s Neighs: 480.5 ave 492 max 469 min 303s Histogram: 1 0 0 0 0 0 0 0 0 1 303s 303s Total # of neighbors = 961 303s Ave neighs/atom = 2.2880952 303s Neighbor list builds = 964 303s Dangerous builds = 0 303s Total wall time: 0:00:00 304s LAMMPS (7 Feb 2024 - Update 1) 304s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 304s using 1 OpenMP thread(s) per MPI task 304s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 304s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 304s 1 by 1 by 1 MPI processor grid 304s Created 420 atoms 304s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 304s create_atoms CPU = 0.000 seconds 304s 60 atoms in group lower 304s 60 atoms in group upper 304s 120 atoms in group boundary 304s 300 atoms in group flow 304s Setting atom values ... 304s 60 settings made for type 304s Setting atom values ... 304s 60 settings made for type 304s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 304s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 304s Neighbor list info ... 304s update: every = 1 steps, delay = 5 steps, check = yes 304s max neighbors/atom: 2000, page size: 100000 304s master list distance cutoff = 1.42246 304s ghost atom cutoff = 1.42246 304s binsize = 0.71123, bins = 37 32 1 304s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 304s (1) pair lj/cut, perpetual 304s attributes: half, newton on 304s pair build: half/bin/atomonly/newton 304s stencil: half/bin/2d 304s bin: standard 304s Setting up Verlet run ... 304s Unit style : lj 304s Current step : 0 304s Time step : 0.003 304s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 304s Step Temp E_pair E_mol TotEng Press Volume 304s 0 1 0 0 0.71190476 0.52314537 571.54286 304s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 304s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 304s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 304s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 304s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 304s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 304s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 304s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 304s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 304s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 304s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 304s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 304s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 304s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 304s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 304s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 304s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 304s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 304s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 304s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 304s Loop time of 0.242113 on 1 procs for 10000 steps with 420 atoms 304s 304s Performance: 10705739.930 tau/day, 41303.009 timesteps/s, 17.347 Matom-step/s 304s 92.7% CPU use with 1 MPI tasks x 1 OpenMP threads 304s 304s MPI task timing breakdown: 304s Section | min time | avg time | max time |%varavg| %total 304s --------------------------------------------------------------- 304s Pair | 0.090414 | 0.090414 | 0.090414 | 0.0 | 37.34 304s Neigh | 0.041332 | 0.041332 | 0.041332 | 0.0 | 17.07 304s Comm | 0.015747 | 0.015747 | 0.015747 | 0.0 | 6.50 304s Output | 0.0013357 | 0.0013357 | 0.0013357 | 0.0 | 0.55 304s Modify | 0.062756 | 0.062756 | 0.062756 | 0.0 | 25.92 304s Other | | 0.03053 | | | 12.61 304s 304s Nlocal: 420 ave 420 max 420 min 304s Histogram: 1 0 0 0 0 0 0 0 0 0 304s Nghost: 46 ave 46 max 46 min 304s Histogram: 1 0 0 0 0 0 0 0 0 0 304s Neighs: 952 ave 952 max 952 min 304s Histogram: 1 0 0 0 0 0 0 0 0 0 304s 304s Total # of neighbors = 952 304s Ave neighs/atom = 2.2666667 304s Neighbor list builds = 996 304s Dangerous builds = 0 304s Total wall time: 0:00:00 304s LAMMPS (7 Feb 2024 - Update 1) 304s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 304s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 304s using 1 OpenMP thread(s) per MPI task 304s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 304s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 304s 2 by 1 by 1 MPI processor grid 304s Created 420 atoms 304s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 304s create_atoms CPU = 0.000 seconds 304s 60 atoms in group lower 304s 60 atoms in group upper 304s 120 atoms in group boundary 304s 300 atoms in group flow 304s Setting atom values ... 304s 60 settings made for type 304s Setting atom values ... 304s 60 settings made for type 304s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 304s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 304s Neighbor list info ... 304s update: every = 1 steps, delay = 5 steps, check = yes 304s max neighbors/atom: 2000, page size: 100000 304s master list distance cutoff = 1.42246 304s ghost atom cutoff = 1.42246 304s binsize = 0.71123, bins = 37 32 1 304s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 304s (1) pair lj/cut, perpetual 304s attributes: half, newton on 304s pair build: half/bin/atomonly/newton 304s stencil: half/bin/2d 304s bin: standard 304s Setting up Verlet run ... 304s Unit style : lj 304s Current step : 0 304s Time step : 0.003 304s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 304s Step Temp E_pair E_mol TotEng Press Volume 304s 0 1 0 0 0.71190476 0.52314537 571.54286 304s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 304s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 304s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 304s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 304s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 304s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 304s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 304s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 304s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 304s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 304s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 304s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 304s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 304s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 304s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 304s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 304s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 304s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 304s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 304s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 304s Loop time of 0.368656 on 2 procs for 10000 steps with 420 atoms 304s 304s Performance: 7030936.961 tau/day, 27125.528 timesteps/s, 11.393 Matom-step/s 304s 95.6% CPU use with 2 MPI tasks x 1 OpenMP threads 304s 304s MPI task timing breakdown: 304s Section | min time | avg time | max time |%varavg| %total 304s --------------------------------------------------------------- 304s Pair | 0.049993 | 0.050157 | 0.050321 | 0.1 | 13.61 304s Neigh | 0.012662 | 0.012829 | 0.012996 | 0.1 | 3.48 304s Comm | 0.14798 | 0.14806 | 0.14815 | 0.0 | 40.16 304s Output | 0.00078981 | 0.001249 | 0.0017082 | 1.3 | 0.34 304s Modify | 0.10913 | 0.11055 | 0.11196 | 0.4 | 29.99 304s Other | | 0.04581 | | | 12.43 304s 304s Nlocal: 210 ave 213 max 207 min 304s Histogram: 1 0 0 0 0 0 0 0 0 1 304s Nghost: 50 ave 51 max 49 min 304s Histogram: 1 0 0 0 0 0 0 0 0 1 304s Neighs: 558.5 ave 573 max 544 min 304s Histogram: 1 0 0 0 0 0 0 0 0 1 304s 304s Total # of neighbors = 1117 304s Ave neighs/atom = 2.6595238 304s Neighbor list builds = 562 304s Dangerous builds = 0 304s Total wall time: 0:00:00 304s LAMMPS (7 Feb 2024 - Update 1) 304s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 304s using 1 OpenMP thread(s) per MPI task 304s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 304s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 304s 1 by 1 by 1 MPI processor grid 304s Created 420 atoms 304s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 304s create_atoms CPU = 0.000 seconds 304s 60 atoms in group lower 304s 60 atoms in group upper 304s 120 atoms in group boundary 304s 300 atoms in group flow 304s Setting atom values ... 304s 60 settings made for type 304s Setting atom values ... 304s 60 settings made for type 304s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 304s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 304s Neighbor list info ... 304s update: every = 1 steps, delay = 5 steps, check = yes 304s max neighbors/atom: 2000, page size: 100000 304s master list distance cutoff = 1.42246 304s ghost atom cutoff = 1.42246 304s binsize = 0.71123, bins = 37 32 1 304s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 304s (1) pair lj/cut, perpetual 304s attributes: half, newton on 304s pair build: half/bin/atomonly/newton 304s stencil: half/bin/2d 304s bin: standard 304s Setting up Verlet run ... 304s Unit style : lj 304s Current step : 0 304s Time step : 0.003 304s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 304s Step Temp E_pair E_mol TotEng Press Volume 304s 0 1 0 0 0.71190476 0.52314537 571.54286 304s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 304s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 304s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 304s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 304s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 304s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 304s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 305s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 305s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 305s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 305s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 305s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 305s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 305s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 305s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 305s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 305s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 305s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 305s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 305s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 305s Loop time of 0.274434 on 1 procs for 10000 steps with 420 atoms 305s 305s Performance: 9444886.111 tau/day, 36438.604 timesteps/s, 15.304 Matom-step/s 305s 93.6% CPU use with 1 MPI tasks x 1 OpenMP threads 305s 305s MPI task timing breakdown: 305s Section | min time | avg time | max time |%varavg| %total 305s --------------------------------------------------------------- 305s Pair | 0.09967 | 0.09967 | 0.09967 | 0.0 | 36.32 305s Neigh | 0.023401 | 0.023401 | 0.023401 | 0.0 | 8.53 305s Comm | 0.012687 | 0.012687 | 0.012687 | 0.0 | 4.62 305s Output | 0.00084893 | 0.00084893 | 0.00084893 | 0.0 | 0.31 305s Modify | 0.10894 | 0.10894 | 0.10894 | 0.0 | 39.70 305s Other | | 0.02889 | | | 10.53 305s 305s Nlocal: 420 ave 420 max 420 min 305s Histogram: 1 0 0 0 0 0 0 0 0 0 305s Nghost: 48 ave 48 max 48 min 305s Histogram: 1 0 0 0 0 0 0 0 0 0 305s Neighs: 1124 ave 1124 max 1124 min 305s Histogram: 1 0 0 0 0 0 0 0 0 0 305s 305s Total # of neighbors = 1124 305s Ave neighs/atom = 2.6761905 305s Neighbor list builds = 561 305s Dangerous builds = 0 305s Total wall time: 0:00:00 305s run: OK 305s autopkgtest [02:24:31]: test flow: -----------------------] 309s autopkgtest [02:24:35]: test flow: - - - - - - - - - - results - - - - - - - - - - 309s flow PASS 312s autopkgtest [02:24:38]: test friction: preparing testbed 314s Reading package lists... 315s Building dependency tree... 315s Reading state information... 316s Starting pkgProblemResolver with broken count: 0 316s Starting 2 pkgProblemResolver with broken count: 0 316s Done 318s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 326s autopkgtest [02:24:52]: test friction: [----------------------- 328s LAMMPS (7 Feb 2024 - Update 1) 328s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 328s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 328s using 1 OpenMP thread(s) per MPI task 328s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 328s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 328s 2 by 1 by 1 MPI processor grid 328s Created 750 atoms 328s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 328s create_atoms CPU = 0.001 seconds 328s Created 750 atoms 328s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 328s create_atoms CPU = 0.000 seconds 328s Created 112 atoms 328s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 328s create_atoms CPU = 0.000 seconds 328s Created 112 atoms 328s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 328s create_atoms CPU = 0.000 seconds 328s 750 atoms in group lo 328s 862 atoms in group lo 328s 750 atoms in group hi 328s 862 atoms in group hi 328s 150 atoms in group lo-fixed 328s 150 atoms in group hi-fixed 328s 300 atoms in group boundary 328s 1424 atoms in group mobile 328s Setting atom values ... 328s 150 settings made for type 328s Setting atom values ... 328s 150 settings made for type 328s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 328s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 328s Neighbor list info ... 328s update: every = 1 steps, delay = 5 steps, check = yes 328s max neighbors/atom: 2000, page size: 100000 328s master list distance cutoff = 2.8 328s ghost atom cutoff = 2.8 328s binsize = 1.4, bins = 41 31 1 328s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 328s (1) pair lj/cut, perpetual 328s attributes: half, newton on 328s pair build: half/bin/atomonly/newton 328s stencil: half/bin/2d 328s bin: standard 328s Setting up Verlet run ... 328s Unit style : lj 328s Current step : 0 328s Time step : 0.0025 328s Per MPI rank memory allocation (min/avg/max) = 2.737 | 2.737 | 2.737 Mbytes 328s Step Temp E_pair E_mol TotEng Press Volume 328s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 328s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 328s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 328s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 328s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 328s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 328s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 329s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 329s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 329s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 329s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 329s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 329s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 330s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 330s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 330s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 330s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 330s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 330s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 330s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 330s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 330s Loop time of 2.96863 on 2 procs for 20000 steps with 1724 atoms 330s 330s Performance: 1455215.294 tau/day, 6737.108 timesteps/s, 11.615 Matom-step/s 330s 98.4% CPU use with 2 MPI tasks x 1 OpenMP threads 330s 330s MPI task timing breakdown: 330s Section | min time | avg time | max time |%varavg| %total 330s --------------------------------------------------------------- 330s Pair | 1.9272 | 2.0662 | 2.2053 | 9.7 | 69.60 330s Neigh | 0.10693 | 0.11798 | 0.12903 | 3.2 | 3.97 330s Comm | 0.24735 | 0.3991 | 0.55085 | 24.0 | 13.44 330s Output | 0.00062165 | 0.0010899 | 0.0015581 | 1.4 | 0.04 330s Modify | 0.22108 | 0.23374 | 0.24641 | 2.6 | 7.87 330s Other | | 0.1505 | | | 5.07 330s 330s Nlocal: 862 ave 868 max 856 min 330s Histogram: 1 0 0 0 0 0 0 0 0 1 330s Nghost: 160.5 ave 161 max 160 min 330s Histogram: 1 0 0 0 0 0 0 0 0 1 330s Neighs: 7178.5 ave 7223 max 7134 min 330s Histogram: 1 0 0 0 0 0 0 0 0 1 330s 330s Total # of neighbors = 14357 330s Ave neighs/atom = 8.3277262 330s Neighbor list builds = 716 330s Dangerous builds = 0 330s Total wall time: 0:00:02 331s LAMMPS (7 Feb 2024 - Update 1) 331s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 331s using 1 OpenMP thread(s) per MPI task 331s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 331s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 331s 1 by 1 by 1 MPI processor grid 331s Created 750 atoms 331s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 331s create_atoms CPU = 0.000 seconds 331s Created 750 atoms 331s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 331s create_atoms CPU = 0.000 seconds 331s Created 112 atoms 331s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 331s create_atoms CPU = 0.000 seconds 331s Created 112 atoms 331s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 331s create_atoms CPU = 0.000 seconds 331s 750 atoms in group lo 331s 862 atoms in group lo 331s 750 atoms in group hi 331s 862 atoms in group hi 331s 150 atoms in group lo-fixed 331s 150 atoms in group hi-fixed 331s 300 atoms in group boundary 331s 1424 atoms in group mobile 331s Setting atom values ... 331s 150 settings made for type 331s Setting atom values ... 331s 150 settings made for type 331s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 331s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 331s Neighbor list info ... 331s update: every = 1 steps, delay = 5 steps, check = yes 331s max neighbors/atom: 2000, page size: 100000 331s master list distance cutoff = 2.8 331s ghost atom cutoff = 2.8 331s binsize = 1.4, bins = 41 31 1 331s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 331s (1) pair lj/cut, perpetual 331s attributes: half, newton on 331s pair build: half/bin/atomonly/newton 331s stencil: half/bin/2d 331s bin: standard 331s Setting up Verlet run ... 331s Unit style : lj 331s Current step : 0 331s Time step : 0.0025 331s Per MPI rank memory allocation (min/avg/max) = 2.746 | 2.746 | 2.746 Mbytes 331s Step Temp E_pair E_mol TotEng Press Volume 331s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 331s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 331s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 331s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 332s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 332s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 332s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 332s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 333s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 333s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 334s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 334s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 334s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 334s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 334s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 334s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 335s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 335s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 335s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 335s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 336s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 336s Loop time of 5.0109 on 1 procs for 20000 steps with 1724 atoms 336s 336s Performance: 862120.007 tau/day, 3991.296 timesteps/s, 6.881 Matom-step/s 336s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 336s 336s MPI task timing breakdown: 336s Section | min time | avg time | max time |%varavg| %total 336s --------------------------------------------------------------- 336s Pair | 4.1067 | 4.1067 | 4.1067 | 0.0 | 81.96 336s Neigh | 0.21798 | 0.21798 | 0.21798 | 0.0 | 4.35 336s Comm | 0.05629 | 0.05629 | 0.05629 | 0.0 | 1.12 336s Output | 0.0015309 | 0.0015309 | 0.0015309 | 0.0 | 0.03 336s Modify | 0.45608 | 0.45608 | 0.45608 | 0.0 | 9.10 336s Other | | 0.1723 | | | 3.44 336s 336s Nlocal: 1724 ave 1724 max 1724 min 336s Histogram: 1 0 0 0 0 0 0 0 0 0 336s Nghost: 144 ave 144 max 144 min 336s Histogram: 1 0 0 0 0 0 0 0 0 0 336s Neighs: 14364 ave 14364 max 14364 min 336s Histogram: 1 0 0 0 0 0 0 0 0 0 336s 336s Total # of neighbors = 14364 336s Ave neighs/atom = 8.3317865 336s Neighbor list builds = 714 336s Dangerous builds = 0 336s Total wall time: 0:00:05 336s run: OK 336s autopkgtest [02:25:02]: test friction: -----------------------] 340s autopkgtest [02:25:06]: test friction: - - - - - - - - - - results - - - - - - - - - - 340s friction PASS 344s autopkgtest [02:25:10]: test hugo: preparing testbed 346s Reading package lists... 346s Building dependency tree... 346s Reading state information... 347s Starting pkgProblemResolver with broken count: 0 347s Starting 2 pkgProblemResolver with broken count: 0 347s Done 348s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 355s autopkgtest [02:25:21]: test hugo: [----------------------- 357s LAMMPS (7 Feb 2024 - Update 1) 357s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 357s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 357s using 1 OpenMP thread(s) per MPI task 357s Lattice spacing in x,y,z = 1.4142135 2 2 357s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 357s 1 by 1 by 2 MPI processor grid 357s Created 1000 atoms 357s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 357s create_atoms CPU = 0.000 seconds 357s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 357s Neighbor list info ... 357s update: every = 1 steps, delay = 0 steps, check = yes 357s max neighbors/atom: 2000, page size: 100000 357s master list distance cutoff = 1.8475372 357s ghost atom cutoff = 1.8475372 357s binsize = 0.92376862, bins = 8 11 11 357s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 357s (1) pair lj/cubic, perpetual 357s attributes: half, newton on 357s pair build: half/bin/atomonly/newton 357s stencil: half/bin/3d 357s bin: standard 357s Setting up cg style minimization ... 357s Unit style : lj 357s Current step : 0 357s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 357s (src/min.cpp:219) 357s Per MPI rank memory allocation (min/avg/max) = 3.924 | 3.924 | 3.924 Mbytes 357s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 357s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 357s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 357s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 357s Loop time of 0.038216 on 2 procs for 134 steps with 1000 atoms 357s 357s 98.3% CPU use with 2 MPI tasks x 1 OpenMP threads 357s 357s Minimization stats: 357s Stopping criterion = force tolerance 357s Energy initial, next-to-last, final = 357s -6.29375358358574 -6.33442531515467 -6.33442531515467 357s Force two-norm initial, final = 3395.2895 5.5900884e-10 357s Force max component initial, final = 1960.2713 3.2516979e-10 357s Final line search alpha, max atom move = 1 3.2516979e-10 357s Iterations, force evaluations = 134 137 357s 357s MPI task timing breakdown: 357s Section | min time | avg time | max time |%varavg| %total 357s --------------------------------------------------------------- 357s Pair | 0.021997 | 0.024035 | 0.026073 | 1.3 | 62.89 357s Neigh | 0.0003794 | 0.00043303 | 0.00048665 | 0.0 | 1.13 357s Comm | 0.0030482 | 0.0051057 | 0.0071633 | 2.9 | 13.36 357s Output | 2.588e-05 | 4.256e-05 | 5.924e-05 | 0.0 | 0.11 357s Modify | 0 | 0 | 0 | 0.0 | 0.00 357s Other | | 0.0086 | | | 22.50 357s 357s Nlocal: 500 ave 550 max 450 min 357s Histogram: 1 0 0 0 0 0 0 0 0 1 357s Nghost: 1214 ave 1264 max 1164 min 357s Histogram: 1 0 0 0 0 0 0 0 0 1 357s Neighs: 10500 ave 11550 max 9450 min 357s Histogram: 1 0 0 0 0 0 0 0 0 1 357s 357s Total # of neighbors = 21000 357s Ave neighs/atom = 21 357s Neighbor list builds = 1 357s Dangerous builds = 0 357s System init for write_restart ... 357s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 357s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 357s using 1 OpenMP thread(s) per MPI task 357s Reading restart file ... 357s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 357s restoring atom style atomic from restart 357s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 357s 1 by 1 by 2 MPI processor grid 357s restoring pair style lj/cubic from restart 357s 1000 atoms 357s read_restart CPU = 0.001 seconds 357s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 357s Neighbor list info ... 357s update: every = 1 steps, delay = 0 steps, check = yes 357s max neighbors/atom: 2000, page size: 100000 357s master list distance cutoff = 1.7475372 357s ghost atom cutoff = 1.7475372 357s binsize = 0.87376862, bins = 8 12 12 357s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 357s (1) pair lj/cubic, perpetual 357s attributes: half, newton on 357s pair build: half/bin/atomonly/newton 357s stencil: half/bin/3d 357s bin: standard 357s Setting up Verlet run ... 357s Unit style : lj 357s Current step : 0 357s Time step : 0.001 357s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 357s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 357s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 357s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 358s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 358s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 358s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 359s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 359s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 359s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 360s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 360s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 360s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 360s Loop time of 3.47022 on 2 procs for 10000 steps with 1000 atoms 360s 360s Performance: 248975.874 tau/day, 2881.665 timesteps/s, 2.882 Matom-step/s 360s 96.5% CPU use with 2 MPI tasks x 1 OpenMP threads 360s 360s MPI task timing breakdown: 360s Section | min time | avg time | max time |%varavg| %total 360s --------------------------------------------------------------- 360s Pair | 2.2287 | 2.2309 | 2.2331 | 0.2 | 64.29 360s Neigh | 0.094912 | 0.095357 | 0.095801 | 0.1 | 2.75 360s Comm | 0.40045 | 0.40436 | 0.40827 | 0.6 | 11.65 360s Output | 0.0010079 | 0.0010412 | 0.0010745 | 0.1 | 0.03 360s Modify | 0.64696 | 0.64889 | 0.65081 | 0.2 | 18.70 360s Other | | 0.08967 | | | 2.58 360s 360s Nlocal: 500 ave 510 max 490 min 360s Histogram: 1 0 0 0 0 0 0 0 0 1 360s Nghost: 1351.5 ave 1357 max 1346 min 360s Histogram: 1 0 0 0 0 0 0 0 0 1 360s Neighs: 10160.5 ave 10780 max 9541 min 360s Histogram: 1 0 0 0 0 0 0 0 0 1 360s 360s Total # of neighbors = 20321 360s Ave neighs/atom = 20.321 360s Neighbor list builds = 194 360s Dangerous builds = 0 360s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 360s using 1 OpenMP thread(s) per MPI task 360s Reading restart file ... 360s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 360s restoring atom style atomic from restart 360s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 360s 1 by 1 by 2 MPI processor grid 360s restoring pair style lj/cubic from restart 360s 1000 atoms 360s read_restart CPU = 0.001 seconds 360s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 360s Neighbor list info ... 360s update: every = 1 steps, delay = 0 steps, check = yes 360s max neighbors/atom: 2000, page size: 100000 360s master list distance cutoff = 1.7475372 360s ghost atom cutoff = 1.7475372 360s binsize = 0.87376862, bins = 8 12 12 360s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 360s (1) pair lj/cubic, perpetual 360s attributes: half, newton on 360s pair build: half/bin/atomonly/newton 360s stencil: half/bin/3d 360s bin: standard 360s Setting up Verlet run ... 360s Unit style : lj 360s Current step : 0 360s Time step : 0.001 360s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 360s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 361s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 361s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 361s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 362s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 362s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 362s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 363s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 363s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 363s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 364s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 364s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 364s Loop time of 3.36967 on 2 procs for 10000 steps with 1000 atoms 364s 364s Performance: 256404.896 tau/day, 2967.649 timesteps/s, 2.968 Matom-step/s 364s 98.0% CPU use with 2 MPI tasks x 1 OpenMP threads 364s 364s MPI task timing breakdown: 364s Section | min time | avg time | max time |%varavg| %total 364s --------------------------------------------------------------- 364s Pair | 1.9158 | 1.9384 | 1.961 | 1.6 | 57.52 364s Neigh | 0.0046301 | 0.004697 | 0.0047639 | 0.1 | 0.14 364s Comm | 0.4617 | 0.48373 | 0.50576 | 3.2 | 14.36 364s Output | 0.0015633 | 0.0015702 | 0.001577 | 0.0 | 0.05 364s Modify | 0.83193 | 0.83904 | 0.84614 | 0.8 | 24.90 364s Other | | 0.1022 | | | 3.03 364s 364s Nlocal: 500 ave 503 max 497 min 364s Histogram: 1 0 0 0 0 0 0 0 0 1 364s Nghost: 1214 ave 1217 max 1211 min 364s Histogram: 1 0 0 0 0 0 0 0 0 1 364s Neighs: 10500 ave 10560 max 10440 min 364s Histogram: 1 0 0 0 0 0 0 0 0 1 364s 364s Total # of neighbors = 21000 364s Ave neighs/atom = 21 364s Neighbor list builds = 10 364s Dangerous builds = 0 364s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 364s using 1 OpenMP thread(s) per MPI task 364s Reading restart file ... 364s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 364s restoring atom style atomic from restart 364s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 364s 1 by 1 by 2 MPI processor grid 364s restoring pair style lj/cubic from restart 364s 1000 atoms 364s read_restart CPU = 0.001 seconds 364s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 364s Neighbor list info ... 364s update: every = 1 steps, delay = 0 steps, check = yes 364s max neighbors/atom: 2000, page size: 100000 364s master list distance cutoff = 1.7475372 364s ghost atom cutoff = 1.7475372 364s binsize = 0.87376862, bins = 8 12 12 364s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 364s (1) pair lj/cubic, perpetual 364s attributes: half, newton on 364s pair build: half/bin/atomonly/newton 364s stencil: half/bin/3d 364s bin: standard 364s Setting up Verlet run ... 364s Unit style : lj 364s Current step : 0 364s Time step : 0.001 364s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 364s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 364s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 364s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 365s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 365s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 365s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 366s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 366s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 366s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 367s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 367s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 367s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 367s Loop time of 3.43741 on 2 procs for 10000 steps with 1000 atoms 367s 367s Performance: 251352.100 tau/day, 2909.168 timesteps/s, 2.909 Matom-step/s 367s 97.7% CPU use with 2 MPI tasks x 1 OpenMP threads 367s 367s MPI task timing breakdown: 367s Section | min time | avg time | max time |%varavg| %total 367s --------------------------------------------------------------- 367s Pair | 1.9676 | 2.0006 | 2.0336 | 2.3 | 58.20 367s Neigh | 0.042193 | 0.043343 | 0.044494 | 0.6 | 1.26 367s Comm | 0.43823 | 0.47229 | 0.50634 | 5.0 | 13.74 367s Output | 0.001493 | 0.0015089 | 0.0015247 | 0.0 | 0.04 367s Modify | 0.81318 | 0.81949 | 0.8258 | 0.7 | 23.84 367s Other | | 0.1002 | | | 2.91 367s 367s Nlocal: 500 ave 503 max 497 min 367s Histogram: 1 0 0 0 0 0 0 0 0 1 367s Nghost: 1217.5 ave 1219 max 1216 min 367s Histogram: 1 0 0 0 0 0 0 0 0 1 367s Neighs: 10291 ave 10353 max 10229 min 367s Histogram: 1 0 0 0 0 0 0 0 0 1 367s 367s Total # of neighbors = 20582 367s Ave neighs/atom = 20.582 367s Neighbor list builds = 89 367s Dangerous builds = 0 367s Total wall time: 0:00:10 367s LAMMPS (7 Feb 2024 - Update 1) 367s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 367s using 1 OpenMP thread(s) per MPI task 367s Lattice spacing in x,y,z = 1.4142135 2 2 367s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 367s 1 by 1 by 1 MPI processor grid 367s Created 1000 atoms 367s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 367s create_atoms CPU = 0.000 seconds 367s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 367s Neighbor list info ... 367s update: every = 1 steps, delay = 0 steps, check = yes 367s max neighbors/atom: 2000, page size: 100000 367s master list distance cutoff = 1.8475372 367s ghost atom cutoff = 1.8475372 367s binsize = 0.92376862, bins = 8 11 11 367s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 367s (1) pair lj/cubic, perpetual 367s attributes: half, newton on 367s pair build: half/bin/atomonly/newton 367s stencil: half/bin/3d 367s bin: standard 367s Setting up cg style minimization ... 367s Unit style : lj 367s Current step : 0 367s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 367s (src/min.cpp:219) 367s Per MPI rank memory allocation (min/avg/max) = 3.934 | 3.934 | 3.934 Mbytes 367s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 367s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 367s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 367s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 367s Loop time of 0.0610348 on 1 procs for 134 steps with 1000 atoms 367s 367s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 367s 367s Minimization stats: 367s Stopping criterion = force tolerance 367s Energy initial, next-to-last, final = 367s -6.29375358358557 -6.33442531515503 -6.33442531515503 367s Force two-norm initial, final = 3395.2895 5.5740327e-10 367s Force max component initial, final = 1960.2713 3.2730334e-10 367s Final line search alpha, max atom move = 1 3.2730334e-10 367s Iterations, force evaluations = 134 137 367s 367s MPI task timing breakdown: 367s Section | min time | avg time | max time |%varavg| %total 367s --------------------------------------------------------------- 367s Pair | 0.047245 | 0.047245 | 0.047245 | 0.0 | 77.41 367s Neigh | 0.00084705 | 0.00084705 | 0.00084705 | 0.0 | 1.39 367s Comm | 0.0013262 | 0.0013262 | 0.0013262 | 0.0 | 2.17 367s Output | 6.5881e-05 | 6.5881e-05 | 6.5881e-05 | 0.0 | 0.11 367s Modify | 0 | 0 | 0 | 0.0 | 0.00 367s Other | | 0.01155 | | | 18.92 367s 367s Nlocal: 1000 ave 1000 max 1000 min 367s Histogram: 1 0 0 0 0 0 0 0 0 0 367s Nghost: 1724 ave 1724 max 1724 min 367s Histogram: 1 0 0 0 0 0 0 0 0 0 367s Neighs: 21000 ave 21000 max 21000 min 367s Histogram: 1 0 0 0 0 0 0 0 0 0 367s 367s Total # of neighbors = 21000 367s Ave neighs/atom = 21 367s Neighbor list builds = 1 367s Dangerous builds = 0 367s System init for write_restart ... 367s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 367s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 367s using 1 OpenMP thread(s) per MPI task 367s Reading restart file ... 367s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 367s restoring atom style atomic from restart 367s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 367s 1 by 1 by 1 MPI processor grid 367s restoring pair style lj/cubic from restart 367s 1000 atoms 367s read_restart CPU = 0.000 seconds 367s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 367s Neighbor list info ... 367s update: every = 1 steps, delay = 0 steps, check = yes 367s max neighbors/atom: 2000, page size: 100000 367s master list distance cutoff = 1.7475372 367s ghost atom cutoff = 1.7475372 367s binsize = 0.87376862, bins = 8 12 12 367s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 367s (1) pair lj/cubic, perpetual 367s attributes: half, newton on 367s pair build: half/bin/atomonly/newton 367s stencil: half/bin/3d 367s bin: standard 367s Setting up Verlet run ... 367s Unit style : lj 367s Current step : 0 367s Time step : 0.001 367s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 367s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 367s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 368s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 369s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 369s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 370s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 370s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 371s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 371s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 372s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 373s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 373s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 373s Loop time of 5.66436 on 1 procs for 10000 steps with 1000 atoms 373s 373s Performance: 152532.800 tau/day, 1765.426 timesteps/s, 1.765 Matom-step/s 373s 98.5% CPU use with 1 MPI tasks x 1 OpenMP threads 373s 373s MPI task timing breakdown: 373s Section | min time | avg time | max time |%varavg| %total 373s --------------------------------------------------------------- 373s Pair | 4.4864 | 4.4864 | 4.4864 | 0.0 | 79.20 373s Neigh | 0.17794 | 0.17794 | 0.17794 | 0.0 | 3.14 373s Comm | 0.12179 | 0.12179 | 0.12179 | 0.0 | 2.15 373s Output | 0.0015023 | 0.0015023 | 0.0015023 | 0.0 | 0.03 373s Modify | 0.77052 | 0.77052 | 0.77052 | 0.0 | 13.60 373s Other | | 0.1062 | | | 1.87 373s 373s Nlocal: 1000 ave 1000 max 1000 min 373s Histogram: 1 0 0 0 0 0 0 0 0 0 373s Nghost: 1886 ave 1886 max 1886 min 373s Histogram: 1 0 0 0 0 0 0 0 0 0 373s Neighs: 20874 ave 20874 max 20874 min 373s Histogram: 1 0 0 0 0 0 0 0 0 0 373s 373s Total # of neighbors = 20874 373s Ave neighs/atom = 20.874 373s Neighbor list builds = 188 373s Dangerous builds = 0 373s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 373s using 1 OpenMP thread(s) per MPI task 373s Reading restart file ... 373s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 373s restoring atom style atomic from restart 373s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 373s 1 by 1 by 1 MPI processor grid 373s restoring pair style lj/cubic from restart 373s 1000 atoms 373s read_restart CPU = 0.001 seconds 373s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 373s Neighbor list info ... 373s update: every = 1 steps, delay = 0 steps, check = yes 373s max neighbors/atom: 2000, page size: 100000 373s master list distance cutoff = 1.7475372 373s ghost atom cutoff = 1.7475372 373s binsize = 0.87376862, bins = 8 12 12 373s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 373s (1) pair lj/cubic, perpetual 373s attributes: half, newton on 373s pair build: half/bin/atomonly/newton 373s stencil: half/bin/3d 373s bin: standard 373s Setting up Verlet run ... 373s Unit style : lj 373s Current step : 0 373s Time step : 0.001 373s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 373s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 373s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 374s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 374s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 375s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 375s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 376s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 376s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 377s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 377s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 378s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 378s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 378s Loop time of 4.99153 on 1 procs for 10000 steps with 1000 atoms 378s 378s Performance: 173093.232 tau/day, 2003.394 timesteps/s, 2.003 Matom-step/s 378s 97.7% CPU use with 1 MPI tasks x 1 OpenMP threads 378s 378s MPI task timing breakdown: 378s Section | min time | avg time | max time |%varavg| %total 378s --------------------------------------------------------------- 378s Pair | 4.0265 | 4.0265 | 4.0265 | 0.0 | 80.67 378s Neigh | 0.010259 | 0.010259 | 0.010259 | 0.0 | 0.21 378s Comm | 0.10275 | 0.10275 | 0.10275 | 0.0 | 2.06 378s Output | 0.0014224 | 0.0014224 | 0.0014224 | 0.0 | 0.03 378s Modify | 0.75116 | 0.75116 | 0.75116 | 0.0 | 15.05 378s Other | | 0.09944 | | | 1.99 378s 378s Nlocal: 1000 ave 1000 max 1000 min 378s Histogram: 1 0 0 0 0 0 0 0 0 0 378s Nghost: 1724 ave 1724 max 1724 min 378s Histogram: 1 0 0 0 0 0 0 0 0 0 378s Neighs: 21000 ave 21000 max 21000 min 378s Histogram: 1 0 0 0 0 0 0 0 0 0 378s 378s Total # of neighbors = 21000 378s Ave neighs/atom = 21 378s Neighbor list builds = 11 378s Dangerous builds = 0 378s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 378s using 1 OpenMP thread(s) per MPI task 378s Reading restart file ... 378s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 378s restoring atom style atomic from restart 378s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 378s 1 by 1 by 1 MPI processor grid 378s restoring pair style lj/cubic from restart 378s 1000 atoms 378s read_restart CPU = 0.001 seconds 378s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 378s Neighbor list info ... 378s update: every = 1 steps, delay = 0 steps, check = yes 378s max neighbors/atom: 2000, page size: 100000 378s master list distance cutoff = 1.7475372 378s ghost atom cutoff = 1.7475372 378s binsize = 0.87376862, bins = 8 12 12 378s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 378s (1) pair lj/cubic, perpetual 378s attributes: half, newton on 378s pair build: half/bin/atomonly/newton 378s stencil: half/bin/3d 378s bin: standard 378s Setting up Verlet run ... 378s Unit style : lj 378s Current step : 0 378s Time step : 0.001 378s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 378s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 378s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 379s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 379s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 380s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 380s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 381s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 381s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 382s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 382s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 383s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 383s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 383s Loop time of 5.00811 on 1 procs for 10000 steps with 1000 atoms 383s 383s Performance: 172520.320 tau/day, 1996.763 timesteps/s, 1.997 Matom-step/s 383s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 383s 383s MPI task timing breakdown: 383s Section | min time | avg time | max time |%varavg| %total 383s --------------------------------------------------------------- 383s Pair | 4.0657 | 4.0657 | 4.0657 | 0.0 | 81.18 383s Neigh | 0.089605 | 0.089605 | 0.089605 | 0.0 | 1.79 383s Comm | 0.099702 | 0.099702 | 0.099702 | 0.0 | 1.99 383s Output | 0.0010844 | 0.0010844 | 0.0010844 | 0.0 | 0.02 383s Modify | 0.6701 | 0.6701 | 0.6701 | 0.0 | 13.38 383s Other | | 0.08193 | | | 1.64 383s 383s Nlocal: 1000 ave 1000 max 1000 min 383s Histogram: 1 0 0 0 0 0 0 0 0 0 383s Nghost: 1724 ave 1724 max 1724 min 383s Histogram: 1 0 0 0 0 0 0 0 0 0 383s Neighs: 20654 ave 20654 max 20654 min 383s Histogram: 1 0 0 0 0 0 0 0 0 0 383s 383s Total # of neighbors = 20654 383s Ave neighs/atom = 20.654 383s Neighbor list builds = 94 383s Dangerous builds = 0 383s Total wall time: 0:00:15 383s run: OK 384s autopkgtest [02:25:50]: test hugo: -----------------------] 387s autopkgtest [02:25:53]: test hugo: - - - - - - - - - - results - - - - - - - - - - 387s hugo PASS 391s autopkgtest [02:25:57]: test command1: preparing testbed 414s autopkgtest [02:26:20]: testbed dpkg architecture: armhf 416s autopkgtest [02:26:22]: testbed apt version: 3.0.0 420s autopkgtest [02:26:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 421s autopkgtest [02:26:27]: testbed release detected to be: questing 429s autopkgtest [02:26:35]: updating testbed package index (apt update) 431s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 431s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 431s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 431s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 431s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.3 kB] 431s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB] 432s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1920 kB] 433s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [204 kB] 433s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1378 kB] 433s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.5 kB] 433s Get:11 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 433s Get:12 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 436s Get:13 http://ftpmaster.internal/ubuntu questing/main Sources [1395 kB] 436s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 436s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [14.9 MB] 436s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 440s Fetched 43.3 MB in 9s (4871 kB/s) 441s Reading package lists... 446s autopkgtest [02:26:52]: upgrading testbed (apt dist-upgrade and autopurge) 448s Reading package lists... 449s Building dependency tree... 449s Reading state information... 450s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 450s Starting 2 pkgProblemResolver with broken count: 0 450s Done 452s Entering ResolveByKeep 453s 454s Calculating upgrade... 455s The following packages will be upgraded: 455s base-files distro-info-data dpkg dpkg-dev ed fwupd htop libdpkg-perl 455s libftdi1-2 libfwupd3 libnpth0t64 libnvme1t64 libsensors-config libsensors5 455s liburcu8t64 motd-news-config nano ubuntu-pro-client ubuntu-pro-client-l10n 455s usb.ids 455s 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 455s Need to get 5431 kB of archives. 455s After this operation, 3722 kB disk space will be freed. 455s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 455s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 455s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 456s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 456s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 456s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 456s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 456s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 456s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 456s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 456s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 456s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 456s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 456s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 456s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 456s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 456s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 456s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 456s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 456s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 457s Fetched 5431 kB in 1s (6454 kB/s) 457s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 457s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 457s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 457s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 457s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 457s Setting up base-files (13.7ubuntu1) ... 457s Installing new version of config file /etc/issue ... 457s Installing new version of config file /etc/issue.net ... 457s Installing new version of config file /etc/lsb-release ... 458s motd-news.service is a disabled or a static unit not running, not starting it. 458s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 458s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 458s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 458s Setting up dpkg (1.22.18ubuntu3) ... 459s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 459s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 459s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 459s Setting up libnpth0t64:armhf (1.8-3) ... 459s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 459s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 459s Unpacking distro-info-data (0.64) over (0.63) ... 459s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 459s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 459s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 459s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 460s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 460s Unpacking ed (1.21.1-1) over (1.21-1) ... 460s Preparing to unpack .../04-libsensors-config_1%3a3.6.2-2_all.deb ... 460s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 460s Preparing to unpack .../05-libsensors5_1%3a3.6.2-2_armhf.deb ... 460s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 460s Preparing to unpack .../06-liburcu8t64_0.15.2-2_armhf.deb ... 460s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 460s Preparing to unpack .../07-nano_8.4-1_armhf.deb ... 460s Unpacking nano (8.4-1) over (8.3-1) ... 460s Preparing to unpack .../08-usb.ids_2025.04.01-1_all.deb ... 460s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 460s Preparing to unpack .../09-dpkg-dev_1.22.18ubuntu3_all.deb ... 460s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 460s Preparing to unpack .../10-libdpkg-perl_1.22.18ubuntu3_all.deb ... 460s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 460s Preparing to unpack .../11-fwupd_2.0.8-3_armhf.deb ... 461s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 461s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 461s Preparing to unpack .../12-libfwupd3_2.0.8-3_armhf.deb ... 461s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 461s Preparing to unpack .../13-htop_3.4.1-4_armhf.deb ... 461s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 461s Preparing to unpack .../14-libftdi1-2_1.5-10_armhf.deb ... 461s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 461s Preparing to unpack .../15-libnvme1t64_1.13-2_armhf.deb ... 461s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 461s Setting up motd-news-config (13.7ubuntu1) ... 461s Setting up liburcu8t64:armhf (0.15.2-2) ... 461s Setting up distro-info-data (0.64) ... 461s Setting up htop (3.4.1-4) ... 461s Setting up libsensors-config (1:3.6.2-2) ... 461s Installing new version of config file /etc/sensors3.conf ... 461s Setting up libfwupd3:armhf (2.0.8-3) ... 461s Setting up libftdi1-2:armhf (1.5-10) ... 461s Setting up libnvme1t64 (1.13-2) ... 461s Setting up ed (1.21.1-1) ... 461s Setting up usb.ids (2025.04.01-1) ... 461s Setting up libsensors5:armhf (1:3.6.2-2) ... 461s Setting up libdpkg-perl (1.22.18ubuntu3) ... 461s Setting up nano (8.4-1) ... 461s Installing new version of config file /etc/nanorc ... 461s Setting up ubuntu-pro-client (35.1ubuntu0) ... 461s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 461s 462s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 462s 462s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 462s 463s Setting up fwupd (2.0.8-3) ... 464s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 464s fwupd.service is a disabled or a static unit not running, not starting it. 464s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 464s Setting up dpkg-dev (1.22.18ubuntu3) ... 464s Processing triggers for dbus (1.16.2-2ubuntu1) ... 464s Processing triggers for install-info (7.1.1-1) ... 465s Processing triggers for libc-bin (2.41-6ubuntu1) ... 465s Processing triggers for man-db (2.13.0-1) ... 467s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 467s Processing triggers for initramfs-tools (0.147ubuntu1) ... 469s Reading package lists... 470s Building dependency tree... 470s Reading state information... 470s Starting pkgProblemResolver with broken count: 0 470s Starting 2 pkgProblemResolver with broken count: 0 470s Done 471s Solving dependencies... 471s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 473s autopkgtest [02:27:19]: rebooting testbed after setup commands that affected boot 537s Reading package lists... 538s Building dependency tree... 538s Reading state information... 538s Starting pkgProblemResolver with broken count: 0 539s Starting 2 pkgProblemResolver with broken count: 0 539s Done 541s The following NEW packages will be installed: 541s autoconf automake autotools-dev cpp cpp-14 cpp-14-arm-linux-gnueabihf 541s cpp-arm-linux-gnueabihf fontconfig-config fonts-dejavu-core 541s fonts-dejavu-mono g++ g++-14 g++-14-arm-linux-gnueabihf 541s g++-arm-linux-gnueabihf gcc gcc-14 gcc-14-arm-linux-gnueabihf 541s gcc-arm-linux-gnueabihf gfortran-14 gfortran-14-arm-linux-gnueabihf 541s hwloc-nox libaec0 libasan8 libblas3 libc-dev-bin libc6-dev libcairo2 541s libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 libfftw3-double3 541s libfontconfig1 libfreetype6 libgbm1 libgcc-14-dev libgfortran-14-dev 541s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 541s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhwloc-dev 541s libhwloc15 libisl23 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26 541s libkim-api2 liblammps-dev liblammps0t64 liblapack3 liblerc4 libllvm19 541s libltdl-dev libltdl7 libmpc3 libmpich-dev libmpich12 libnetcdf22 libnuma-dev 541s libogg0 libopengl0 libpixman-1-0 libproj25 libpython3.13 libsharpyuv0 541s libslurm42t64 libstdc++-14-dev libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 541s libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libubsan1 libvoro++1 541s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 541s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 541s libxcb-sync1 libxcb-xfixes0 libxft2 libxrender1 libxshmfence1 libxss1 541s libxxf86vm1 linux-libc-dev m4 mesa-libgallium mpi-default-bin 541s mpi-default-dev mpich proj-data python3-lammps rpcsvc-proto x11-common 541s 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. 541s Need to get 156 MB of archives. 541s After this operation, 523 MB of additional disk space will be used. 541s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf m4 armhf 1.4.19-7 [238 kB] 541s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf autoconf all 2.72-3ubuntu1 [383 kB] 541s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf autotools-dev all 20220109.1 [44.9 kB] 541s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf automake all 1:1.17-3ubuntu1 [572 kB] 542s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf libisl23 armhf 0.27-1 [546 kB] 542s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 542s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [9221 kB] 542s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf cpp-14 armhf 14.2.0-19ubuntu2 [1032 B] 542s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [5578 B] 542s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf cpp armhf 4:14.2.0-1ubuntu1 [22.4 kB] 542s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 542s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 542s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig-config armhf 2.15.0-2.2ubuntu1 [37.9 kB] 542s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf libcc1-0 armhf 15-20250404-0ubuntu1 [43.3 kB] 542s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libgomp1 armhf 15-20250404-0ubuntu1 [128 kB] 542s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf libasan8 armhf 15-20250404-0ubuntu1 [2951 kB] 542s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libubsan1 armhf 15-20250404-0ubuntu1 [1188 kB] 542s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libgcc-14-dev armhf 14.2.0-19ubuntu2 [897 kB] 542s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [18.0 MB] 543s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf gcc-14 armhf 14.2.0-19ubuntu2 [510 kB] 543s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf gcc-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1218 B] 543s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf gcc armhf 4:14.2.0-1ubuntu1 [5004 B] 543s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libc-dev-bin armhf 2.41-6ubuntu1 [21.7 kB] 543s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf linux-libc-dev armhf 6.14.0-15.15 [1687 kB] 543s Get:25 http://ftpmaster.internal/ubuntu questing/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 543s Get:26 http://ftpmaster.internal/ubuntu questing/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 543s Get:27 http://ftpmaster.internal/ubuntu questing/main armhf libc6-dev armhf 2.41-6ubuntu1 [1396 kB] 543s Get:28 http://ftpmaster.internal/ubuntu questing/main armhf libstdc++-14-dev armhf 14.2.0-19ubuntu2 [2576 kB] 543s Get:29 http://ftpmaster.internal/ubuntu questing/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [10.5 MB] 543s Get:30 http://ftpmaster.internal/ubuntu questing/main armhf g++-14 armhf 14.2.0-19ubuntu2 [23.0 kB] 543s Get:31 http://ftpmaster.internal/ubuntu questing/main armhf g++-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [966 B] 543s Get:32 http://ftpmaster.internal/ubuntu questing/main armhf g++ armhf 4:14.2.0-1ubuntu1 [1084 B] 543s Get:33 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran5 armhf 15-20250404-0ubuntu1 [331 kB] 543s Get:34 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran-14-dev armhf 14.2.0-19ubuntu2 [370 kB] 543s Get:35 http://ftpmaster.internal/ubuntu questing/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [9763 kB] 543s Get:36 http://ftpmaster.internal/ubuntu questing/main armhf gfortran-14 armhf 14.2.0-19ubuntu2 [14.2 kB] 543s Get:37 http://ftpmaster.internal/ubuntu questing/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 543s Get:38 http://ftpmaster.internal/ubuntu questing/main armhf libblas3 armhf 3.12.1-2 [132 kB] 543s Get:39 http://ftpmaster.internal/ubuntu questing/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 543s Get:40 http://ftpmaster.internal/ubuntu questing/main armhf libfontconfig1 armhf 2.15.0-2.2ubuntu1 [114 kB] 543s Get:41 http://ftpmaster.internal/ubuntu questing/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 543s Get:42 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 543s Get:43 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 543s Get:44 http://ftpmaster.internal/ubuntu questing/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 543s Get:45 http://ftpmaster.internal/ubuntu questing/main armhf libcairo2 armhf 1.18.4-1 [483 kB] 543s Get:46 http://ftpmaster.internal/ubuntu questing/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 544s Get:47 http://ftpmaster.internal/ubuntu questing/universe armhf libdouble-conversion3 armhf 3.3.1-1 [39.1 kB] 544s Get:48 http://ftpmaster.internal/ubuntu questing/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build1 [369 kB] 544s Get:49 http://ftpmaster.internal/ubuntu questing/main armhf libwayland-server0 armhf 1.23.1-3 [30.3 kB] 544s Get:50 http://ftpmaster.internal/ubuntu questing/main armhf libllvm19 armhf 1:19.1.7-3ubuntu1 [27.8 MB] 544s Get:51 http://ftpmaster.internal/ubuntu questing/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 544s Get:52 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 544s Get:53 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 544s Get:54 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 544s Get:55 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 544s Get:56 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 544s Get:57 http://ftpmaster.internal/ubuntu questing/main armhf libxshmfence1 armhf 1.3.3-1 [4948 B] 544s Get:58 http://ftpmaster.internal/ubuntu questing/main armhf mesa-libgallium armhf 25.0.3-1ubuntu2 [8260 kB] 544s Get:59 http://ftpmaster.internal/ubuntu questing/main armhf libgbm1 armhf 25.0.3-1ubuntu2 [29.0 kB] 544s Get:60 http://ftpmaster.internal/ubuntu questing/main armhf libvulkan1 armhf 1.4.304.0-1 [127 kB] 544s Get:61 http://ftpmaster.internal/ubuntu questing/main armhf libgl1-mesa-dri armhf 25.0.3-1ubuntu2 [32.0 kB] 544s Get:62 http://ftpmaster.internal/ubuntu questing/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 544s Get:63 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 544s Get:64 http://ftpmaster.internal/ubuntu questing/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 544s Get:65 http://ftpmaster.internal/ubuntu questing/main armhf libglx-mesa0 armhf 25.0.3-1ubuntu2 [120 kB] 544s Get:66 http://ftpmaster.internal/ubuntu questing/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 544s Get:67 http://ftpmaster.internal/ubuntu questing/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 544s Get:68 http://ftpmaster.internal/ubuntu questing/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB] 545s Get:69 http://ftpmaster.internal/ubuntu questing/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 545s Get:70 http://ftpmaster.internal/ubuntu questing/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 545s Get:71 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 545s Get:72 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB] 545s Get:73 http://ftpmaster.internal/ubuntu questing/universe armhf libhwloc15 armhf 2.12.0-1 [147 kB] 545s Get:74 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 545s Get:75 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 545s Get:76 http://ftpmaster.internal/ubuntu questing/main armhf libjsoncpp26 armhf 1.9.6-3 [75.5 kB] 545s Get:77 http://ftpmaster.internal/ubuntu questing/universe armhf libkim-api2 armhf 2.3.0-1ubuntu1 [566 kB] 545s Get:78 http://ftpmaster.internal/ubuntu questing/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 545s Get:79 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf libmpich12 armhf 4.3.0-5 [1680 kB] 545s Get:80 http://ftpmaster.internal/ubuntu questing/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB] 545s Get:81 http://ftpmaster.internal/ubuntu questing/main armhf libpython3.13 armhf 3.13.3-1 [2082 kB] 545s Get:82 http://ftpmaster.internal/ubuntu questing/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 545s Get:83 http://ftpmaster.internal/ubuntu questing/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB] 545s Get:84 http://ftpmaster.internal/ubuntu questing/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 545s Get:85 http://ftpmaster.internal/ubuntu questing/universe armhf proj-data all 9.5.1-1 [7924 kB] 545s Get:86 http://ftpmaster.internal/ubuntu questing/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 545s Get:87 http://ftpmaster.internal/ubuntu questing/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 545s Get:88 http://ftpmaster.internal/ubuntu questing/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 545s Get:89 http://ftpmaster.internal/ubuntu questing/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 545s Get:90 http://ftpmaster.internal/ubuntu questing/main armhf libtiff6 armhf 4.7.0-3ubuntu1 [184 kB] 545s Get:91 http://ftpmaster.internal/ubuntu questing/universe armhf libproj25 armhf 9.5.1-1 [1331 kB] 545s Get:92 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbbind-2-5 armhf 2022.0.0-2 [13.8 kB] 545s Get:93 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbmalloc2 armhf 2022.0.0-2 [47.0 kB] 545s Get:94 http://ftpmaster.internal/ubuntu questing/universe armhf libtbb12 armhf 2022.0.0-2 [80.8 kB] 545s Get:95 http://ftpmaster.internal/ubuntu questing/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 545s Get:96 http://ftpmaster.internal/ubuntu questing/main armhf libtheoradec1 armhf 1.2.0~alpha1+dfsg-6 [45.8 kB] 545s Get:97 http://ftpmaster.internal/ubuntu questing/main armhf libtheoraenc1 armhf 1.2.0~alpha1+dfsg-6 [91.8 kB] 545s Get:98 http://ftpmaster.internal/ubuntu questing/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 545s Get:99 http://ftpmaster.internal/ubuntu questing/main armhf x11-common all 1:7.7+23ubuntu4 [21.8 kB] 545s Get:100 http://ftpmaster.internal/ubuntu questing/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 545s Get:101 http://ftpmaster.internal/ubuntu questing/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 545s Get:102 http://ftpmaster.internal/ubuntu questing/universe armhf libvtk9.3 armhf 9.3.0+dfsg1-4ubuntu1 [21.9 MB] 546s Get:103 http://ftpmaster.internal/ubuntu questing/universe armhf liblammps0t64 armhf 20240207+dfsg-3build3 [6801 kB] 547s Get:104 http://ftpmaster.internal/ubuntu questing/main armhf libnuma-dev armhf 2.0.18-1build1 [35.0 kB] 547s Get:105 http://ftpmaster.internal/ubuntu questing/main armhf libltdl7 armhf 2.5.4-4 [39.8 kB] 547s Get:106 http://ftpmaster.internal/ubuntu questing/main armhf libltdl-dev armhf 2.5.4-4 [169 kB] 547s Get:107 http://ftpmaster.internal/ubuntu questing/universe armhf libhwloc-dev armhf 2.12.0-1 [247 kB] 547s Get:108 http://ftpmaster.internal/ubuntu questing/universe armhf hwloc-nox armhf 2.12.0-1 [213 kB] 547s Get:109 http://ftpmaster.internal/ubuntu questing/universe armhf libslurm42t64 armhf 24.11.3-2 [769 kB] 547s Get:110 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf mpich armhf 4.3.0-5 [237 kB] 547s Get:111 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf libmpich-dev armhf 4.3.0-5 [2636 kB] 547s Get:112 http://ftpmaster.internal/ubuntu questing/universe armhf mpi-default-dev armhf 1.18 [3322 B] 547s Get:113 http://ftpmaster.internal/ubuntu questing/universe armhf liblammps-dev armhf 20240207+dfsg-3build3 [112 kB] 547s Get:114 http://ftpmaster.internal/ubuntu questing/universe armhf mpi-default-bin armhf 1.18 [2504 B] 547s Get:115 http://ftpmaster.internal/ubuntu questing/universe armhf python3-lammps armhf 20240207+dfsg-3build3 [70.5 kB] 548s Fetched 156 MB in 6s (26.5 MB/s) 548s Selecting previously unselected package m4. 548s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63951 files and directories currently installed.) 548s Preparing to unpack .../000-m4_1.4.19-7_armhf.deb ... 548s Unpacking m4 (1.4.19-7) ... 548s Selecting previously unselected package autoconf. 548s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 548s Unpacking autoconf (2.72-3ubuntu1) ... 548s Selecting previously unselected package autotools-dev. 548s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 548s Unpacking autotools-dev (20220109.1) ... 548s Selecting previously unselected package automake. 548s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 548s Unpacking automake (1:1.17-3ubuntu1) ... 548s Selecting previously unselected package libisl23:armhf. 548s Preparing to unpack .../004-libisl23_0.27-1_armhf.deb ... 548s Unpacking libisl23:armhf (0.27-1) ... 548s Selecting previously unselected package libmpc3:armhf. 548s Preparing to unpack .../005-libmpc3_1.3.1-1build2_armhf.deb ... 548s Unpacking libmpc3:armhf (1.3.1-1build2) ... 548s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 548s Preparing to unpack .../006-cpp-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 548s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 549s Selecting previously unselected package cpp-14. 549s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_armhf.deb ... 549s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 549s Selecting previously unselected package cpp-arm-linux-gnueabihf. 549s Preparing to unpack .../008-cpp-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 549s Unpacking cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 549s Selecting previously unselected package cpp. 549s Preparing to unpack .../009-cpp_4%3a14.2.0-1ubuntu1_armhf.deb ... 549s Unpacking cpp (4:14.2.0-1ubuntu1) ... 549s Selecting previously unselected package fonts-dejavu-mono. 549s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 549s Unpacking fonts-dejavu-mono (2.37-8) ... 549s Selecting previously unselected package fonts-dejavu-core. 549s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 549s Unpacking fonts-dejavu-core (2.37-8) ... 549s Selecting previously unselected package fontconfig-config. 549s Preparing to unpack .../012-fontconfig-config_2.15.0-2.2ubuntu1_armhf.deb ... 550s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 550s Selecting previously unselected package libcc1-0:armhf. 550s Preparing to unpack .../013-libcc1-0_15-20250404-0ubuntu1_armhf.deb ... 550s Unpacking libcc1-0:armhf (15-20250404-0ubuntu1) ... 550s Selecting previously unselected package libgomp1:armhf. 550s Preparing to unpack .../014-libgomp1_15-20250404-0ubuntu1_armhf.deb ... 550s Unpacking libgomp1:armhf (15-20250404-0ubuntu1) ... 550s Selecting previously unselected package libasan8:armhf. 550s Preparing to unpack .../015-libasan8_15-20250404-0ubuntu1_armhf.deb ... 550s Unpacking libasan8:armhf (15-20250404-0ubuntu1) ... 550s Selecting previously unselected package libubsan1:armhf. 550s Preparing to unpack .../016-libubsan1_15-20250404-0ubuntu1_armhf.deb ... 550s Unpacking libubsan1:armhf (15-20250404-0ubuntu1) ... 550s Selecting previously unselected package libgcc-14-dev:armhf. 550s Preparing to unpack .../017-libgcc-14-dev_14.2.0-19ubuntu2_armhf.deb ... 550s Unpacking libgcc-14-dev:armhf (14.2.0-19ubuntu2) ... 550s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 550s Preparing to unpack .../018-gcc-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 550s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 551s Selecting previously unselected package gcc-14. 551s Preparing to unpack .../019-gcc-14_14.2.0-19ubuntu2_armhf.deb ... 551s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 551s Selecting previously unselected package gcc-arm-linux-gnueabihf. 551s Preparing to unpack .../020-gcc-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 551s Unpacking gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 551s Selecting previously unselected package gcc. 551s Preparing to unpack .../021-gcc_4%3a14.2.0-1ubuntu1_armhf.deb ... 551s Unpacking gcc (4:14.2.0-1ubuntu1) ... 551s Selecting previously unselected package libc-dev-bin. 551s Preparing to unpack .../022-libc-dev-bin_2.41-6ubuntu1_armhf.deb ... 551s Unpacking libc-dev-bin (2.41-6ubuntu1) ... 551s Selecting previously unselected package linux-libc-dev:armhf. 551s Preparing to unpack .../023-linux-libc-dev_6.14.0-15.15_armhf.deb ... 551s Unpacking linux-libc-dev:armhf (6.14.0-15.15) ... 551s Selecting previously unselected package libcrypt-dev:armhf. 551s Preparing to unpack .../024-libcrypt-dev_1%3a4.4.38-1_armhf.deb ... 551s Unpacking libcrypt-dev:armhf (1:4.4.38-1) ... 551s Selecting previously unselected package rpcsvc-proto. 551s Preparing to unpack .../025-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 551s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 551s Selecting previously unselected package libc6-dev:armhf. 551s Preparing to unpack .../026-libc6-dev_2.41-6ubuntu1_armhf.deb ... 551s Unpacking libc6-dev:armhf (2.41-6ubuntu1) ... 552s Selecting previously unselected package libstdc++-14-dev:armhf. 552s Preparing to unpack .../027-libstdc++-14-dev_14.2.0-19ubuntu2_armhf.deb ... 552s Unpacking libstdc++-14-dev:armhf (14.2.0-19ubuntu2) ... 552s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 552s Preparing to unpack .../028-g++-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 552s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 552s Selecting previously unselected package g++-14. 552s Preparing to unpack .../029-g++-14_14.2.0-19ubuntu2_armhf.deb ... 552s Unpacking g++-14 (14.2.0-19ubuntu2) ... 552s Selecting previously unselected package g++-arm-linux-gnueabihf. 552s Preparing to unpack .../030-g++-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 552s Unpacking g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 552s Selecting previously unselected package g++. 552s Preparing to unpack .../031-g++_4%3a14.2.0-1ubuntu1_armhf.deb ... 552s Unpacking g++ (4:14.2.0-1ubuntu1) ... 552s Selecting previously unselected package libgfortran5:armhf. 552s Preparing to unpack .../032-libgfortran5_15-20250404-0ubuntu1_armhf.deb ... 552s Unpacking libgfortran5:armhf (15-20250404-0ubuntu1) ... 553s Selecting previously unselected package libgfortran-14-dev:armhf. 553s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-19ubuntu2_armhf.deb ... 553s Unpacking libgfortran-14-dev:armhf (14.2.0-19ubuntu2) ... 553s Selecting previously unselected package gfortran-14-arm-linux-gnueabihf. 553s Preparing to unpack .../034-gfortran-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 553s Unpacking gfortran-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 553s Selecting previously unselected package gfortran-14. 553s Preparing to unpack .../035-gfortran-14_14.2.0-19ubuntu2_armhf.deb ... 553s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 553s Selecting previously unselected package libaec0:armhf. 553s Preparing to unpack .../036-libaec0_1.1.3-1_armhf.deb ... 553s Unpacking libaec0:armhf (1.1.3-1) ... 553s Selecting previously unselected package libblas3:armhf. 553s Preparing to unpack .../037-libblas3_3.12.1-2_armhf.deb ... 553s Unpacking libblas3:armhf (3.12.1-2) ... 553s Selecting previously unselected package libfreetype6:armhf. 553s Preparing to unpack .../038-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 553s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 553s Selecting previously unselected package libfontconfig1:armhf. 553s Preparing to unpack .../039-libfontconfig1_2.15.0-2.2ubuntu1_armhf.deb ... 553s Unpacking libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 553s Selecting previously unselected package libpixman-1-0:armhf. 553s Preparing to unpack .../040-libpixman-1-0_0.44.0-3_armhf.deb ... 553s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 553s Selecting previously unselected package libxcb-render0:armhf. 554s Preparing to unpack .../041-libxcb-render0_1.17.0-2_armhf.deb ... 554s Unpacking libxcb-render0:armhf (1.17.0-2) ... 554s Selecting previously unselected package libxcb-shm0:armhf. 554s Preparing to unpack .../042-libxcb-shm0_1.17.0-2_armhf.deb ... 554s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 554s Selecting previously unselected package libxrender1:armhf. 554s Preparing to unpack .../043-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 554s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 554s Selecting previously unselected package libcairo2:armhf. 554s Preparing to unpack .../044-libcairo2_1.18.4-1_armhf.deb ... 554s Unpacking libcairo2:armhf (1.18.4-1) ... 554s Selecting previously unselected package libdeflate0:armhf. 554s Preparing to unpack .../045-libdeflate0_1.23-1_armhf.deb ... 554s Unpacking libdeflate0:armhf (1.23-1) ... 554s Selecting previously unselected package libdouble-conversion3:armhf. 554s Preparing to unpack .../046-libdouble-conversion3_3.3.1-1_armhf.deb ... 554s Unpacking libdouble-conversion3:armhf (3.3.1-1) ... 554s Selecting previously unselected package libfftw3-double3:armhf. 554s Preparing to unpack .../047-libfftw3-double3_3.3.10-2fakesync1build1_armhf.deb ... 554s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 554s Selecting previously unselected package libwayland-server0:armhf. 554s Preparing to unpack .../048-libwayland-server0_1.23.1-3_armhf.deb ... 554s Unpacking libwayland-server0:armhf (1.23.1-3) ... 554s Selecting previously unselected package libllvm19:armhf. 554s Preparing to unpack .../049-libllvm19_1%3a19.1.7-3ubuntu1_armhf.deb ... 554s Unpacking libllvm19:armhf (1:19.1.7-3ubuntu1) ... 555s Selecting previously unselected package libx11-xcb1:armhf. 555s Preparing to unpack .../050-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 555s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 555s Selecting previously unselected package libxcb-dri3-0:armhf. 555s Preparing to unpack .../051-libxcb-dri3-0_1.17.0-2_armhf.deb ... 555s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 555s Selecting previously unselected package libxcb-present0:armhf. 555s Preparing to unpack .../052-libxcb-present0_1.17.0-2_armhf.deb ... 555s Unpacking libxcb-present0:armhf (1.17.0-2) ... 555s Selecting previously unselected package libxcb-randr0:armhf. 555s Preparing to unpack .../053-libxcb-randr0_1.17.0-2_armhf.deb ... 555s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 555s Selecting previously unselected package libxcb-sync1:armhf. 555s Preparing to unpack .../054-libxcb-sync1_1.17.0-2_armhf.deb ... 555s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 555s Selecting previously unselected package libxcb-xfixes0:armhf. 555s Preparing to unpack .../055-libxcb-xfixes0_1.17.0-2_armhf.deb ... 555s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 555s Selecting previously unselected package libxshmfence1:armhf. 556s Preparing to unpack .../056-libxshmfence1_1.3.3-1_armhf.deb ... 556s Unpacking libxshmfence1:armhf (1.3.3-1) ... 556s Selecting previously unselected package mesa-libgallium:armhf. 556s Preparing to unpack .../057-mesa-libgallium_25.0.3-1ubuntu2_armhf.deb ... 556s Unpacking mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 556s Selecting previously unselected package libgbm1:armhf. 556s Preparing to unpack .../058-libgbm1_25.0.3-1ubuntu2_armhf.deb ... 556s Unpacking libgbm1:armhf (25.0.3-1ubuntu2) ... 556s Selecting previously unselected package libvulkan1:armhf. 556s Preparing to unpack .../059-libvulkan1_1.4.304.0-1_armhf.deb ... 556s Unpacking libvulkan1:armhf (1.4.304.0-1) ... 556s Selecting previously unselected package libgl1-mesa-dri:armhf. 556s Preparing to unpack .../060-libgl1-mesa-dri_25.0.3-1ubuntu2_armhf.deb ... 556s Unpacking libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 556s Selecting previously unselected package libglvnd0:armhf. 556s Preparing to unpack .../061-libglvnd0_1.7.0-1build1_armhf.deb ... 556s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 556s Selecting previously unselected package libxcb-glx0:armhf. 556s Preparing to unpack .../062-libxcb-glx0_1.17.0-2_armhf.deb ... 556s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 556s Selecting previously unselected package libxxf86vm1:armhf. 556s Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 556s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 556s Selecting previously unselected package libglx-mesa0:armhf. 556s Preparing to unpack .../064-libglx-mesa0_25.0.3-1ubuntu2_armhf.deb ... 556s Unpacking libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 556s Selecting previously unselected package libglx0:armhf. 556s Preparing to unpack .../065-libglx0_1.7.0-1build1_armhf.deb ... 556s Unpacking libglx0:armhf (1.7.0-1build1) ... 556s Selecting previously unselected package libgl1:armhf. 556s Preparing to unpack .../066-libgl1_1.7.0-1build1_armhf.deb ... 556s Unpacking libgl1:armhf (1.7.0-1build1) ... 556s Selecting previously unselected package libgl2ps1.4. 557s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ... 557s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 557s Selecting previously unselected package libglew2.2:armhf. 557s Preparing to unpack .../068-libglew2.2_2.2.0-4build1_armhf.deb ... 557s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 557s Selecting previously unselected package libsz2:armhf. 557s Preparing to unpack .../069-libsz2_1.1.3-1_armhf.deb ... 557s Unpacking libsz2:armhf (1.1.3-1) ... 557s Selecting previously unselected package libhdf5-310:armhf. 557s Preparing to unpack .../070-libhdf5-310_1.14.5+repack-3_armhf.deb ... 557s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 557s Selecting previously unselected package libhdf5-hl-310:armhf. 557s Preparing to unpack .../071-libhdf5-hl-310_1.14.5+repack-3_armhf.deb ... 557s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3) ... 557s Selecting previously unselected package libhwloc15:armhf. 557s Preparing to unpack .../072-libhwloc15_2.12.0-1_armhf.deb ... 557s Unpacking libhwloc15:armhf (2.12.0-1) ... 557s Selecting previously unselected package libjpeg-turbo8:armhf. 557s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 557s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 557s Selecting previously unselected package libjpeg8:armhf. 557s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_armhf.deb ... 557s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 557s Selecting previously unselected package libjsoncpp26:armhf. 557s Preparing to unpack .../075-libjsoncpp26_1.9.6-3_armhf.deb ... 557s Unpacking libjsoncpp26:armhf (1.9.6-3) ... 557s Selecting previously unselected package libkim-api2:armhf. 557s Preparing to unpack .../076-libkim-api2_2.3.0-1ubuntu1_armhf.deb ... 557s Unpacking libkim-api2:armhf (2.3.0-1ubuntu1) ... 557s Selecting previously unselected package liblapack3:armhf. 557s Preparing to unpack .../077-liblapack3_3.12.1-2_armhf.deb ... 557s Unpacking liblapack3:armhf (3.12.1-2) ... 557s Selecting previously unselected package libmpich12:armhf. 557s Preparing to unpack .../078-libmpich12_4.3.0-5_armhf.deb ... 557s Unpacking libmpich12:armhf (4.3.0-5) ... 557s Selecting previously unselected package libnetcdf22:armhf. 557s Preparing to unpack .../079-libnetcdf22_1%3a4.9.3-1_armhf.deb ... 557s Unpacking libnetcdf22:armhf (1:4.9.3-1) ... 558s Selecting previously unselected package libpython3.13:armhf. 558s Preparing to unpack .../080-libpython3.13_3.13.3-1_armhf.deb ... 558s Unpacking libpython3.13:armhf (3.13.3-1) ... 558s Selecting previously unselected package libvoro++1. 558s Preparing to unpack .../081-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 558s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 558s Selecting previously unselected package libogg0:armhf. 558s Preparing to unpack .../082-libogg0_1.3.5-3build1_armhf.deb ... 558s Unpacking libogg0:armhf (1.3.5-3build1) ... 558s Selecting previously unselected package libopengl0:armhf. 558s Preparing to unpack .../083-libopengl0_1.7.0-1build1_armhf.deb ... 558s Unpacking libopengl0:armhf (1.7.0-1build1) ... 558s Selecting previously unselected package proj-data. 558s Preparing to unpack .../084-proj-data_9.5.1-1_all.deb ... 558s Unpacking proj-data (9.5.1-1) ... 558s Selecting previously unselected package libjbig0:armhf. 558s Preparing to unpack .../085-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 558s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 558s Selecting previously unselected package liblerc4:armhf. 558s Preparing to unpack .../086-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 558s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 558s Selecting previously unselected package libsharpyuv0:armhf. 558s Preparing to unpack .../087-libsharpyuv0_1.5.0-0.1_armhf.deb ... 558s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 558s Selecting previously unselected package libwebp7:armhf. 558s Preparing to unpack .../088-libwebp7_1.5.0-0.1_armhf.deb ... 558s Unpacking libwebp7:armhf (1.5.0-0.1) ... 558s Selecting previously unselected package libtiff6:armhf. 558s Preparing to unpack .../089-libtiff6_4.7.0-3ubuntu1_armhf.deb ... 558s Unpacking libtiff6:armhf (4.7.0-3ubuntu1) ... 558s Selecting previously unselected package libproj25:armhf. 558s Preparing to unpack .../090-libproj25_9.5.1-1_armhf.deb ... 558s Unpacking libproj25:armhf (9.5.1-1) ... 559s Selecting previously unselected package libtbbbind-2-5:armhf. 559s Preparing to unpack .../091-libtbbbind-2-5_2022.0.0-2_armhf.deb ... 559s Unpacking libtbbbind-2-5:armhf (2022.0.0-2) ... 559s Selecting previously unselected package libtbbmalloc2:armhf. 559s Preparing to unpack .../092-libtbbmalloc2_2022.0.0-2_armhf.deb ... 559s Unpacking libtbbmalloc2:armhf (2022.0.0-2) ... 559s Selecting previously unselected package libtbb12:armhf. 559s Preparing to unpack .../093-libtbb12_2022.0.0-2_armhf.deb ... 559s Unpacking libtbb12:armhf (2022.0.0-2) ... 559s Selecting previously unselected package libtcl8.6:armhf. 559s Preparing to unpack .../094-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 559s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 559s Selecting previously unselected package libtheoradec1:armhf. 559s Preparing to unpack .../095-libtheoradec1_1.2.0~alpha1+dfsg-6_armhf.deb ... 559s Unpacking libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ... 559s Selecting previously unselected package libtheoraenc1:armhf. 559s Preparing to unpack .../096-libtheoraenc1_1.2.0~alpha1+dfsg-6_armhf.deb 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unselected package liblammps0t64:armhf. 560s Preparing to unpack .../102-liblammps0t64_20240207+dfsg-3build3_armhf.deb ... 560s Unpacking liblammps0t64:armhf (20240207+dfsg-3build3) ... 561s Selecting previously unselected package libnuma-dev:armhf. 561s Preparing to unpack .../103-libnuma-dev_2.0.18-1build1_armhf.deb ... 561s Unpacking libnuma-dev:armhf (2.0.18-1build1) ... 561s Selecting previously unselected package libltdl7:armhf. 561s Preparing to unpack .../104-libltdl7_2.5.4-4_armhf.deb ... 561s Unpacking libltdl7:armhf (2.5.4-4) ... 561s Selecting previously unselected package libltdl-dev:armhf. 561s Preparing to unpack .../105-libltdl-dev_2.5.4-4_armhf.deb ... 561s Unpacking libltdl-dev:armhf (2.5.4-4) ... 561s Selecting previously unselected package libhwloc-dev:armhf. 561s Preparing to unpack .../106-libhwloc-dev_2.12.0-1_armhf.deb ... 561s Unpacking libhwloc-dev:armhf (2.12.0-1) ... 561s Selecting previously unselected package hwloc-nox. 561s Preparing to unpack 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libmpich-dev:armhf (4.3.0-5) ... 563s update-alternatives: using /usr/include/arm-linux-gnueabihf/mpich to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode 563s Setting up mpi-default-dev (1.18) ... 563s Setting up liblammps-dev (20240207+dfsg-3build3) ... 563s Setting up python3-lammps (20240207+dfsg-3build3) ... 564s Processing triggers for man-db (2.13.0-1) ... 565s Processing triggers for install-info (7.1.1-1) ... 565s Processing triggers for libc-bin (2.41-6ubuntu1) ... 610s autopkgtest [02:29:36]: test command1: cd python/examples; python3 demo.py 610s autopkgtest [02:29:36]: test command1: [----------------------- 613s LAMMPS (7 Feb 2024 - Update 1) 613s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 613s using 1 OpenMP thread(s) per MPI task 613s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 613s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 613s 1 by 1 by 1 MPI processor grid 613s Created 4000 atoms 613s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 613s create_atoms CPU = 0.002 seconds 613s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 613s Neighbor list info ... 613s update: every = 20 steps, delay = 0 steps, check = no 613s max neighbors/atom: 2000, page size: 100000 613s master list distance cutoff = 2.8 613s ghost atom cutoff = 2.8 613s binsize = 1.4, bins = 12 12 12 613s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 613s (1) pair lj/cut, perpetual 613s attributes: half, newton on 613s pair build: half/bin/atomonly/newton 613s stencil: half/bin/3d 613s bin: standard 613s Setting up Verlet run ... 613s Unit style : lj 613s Current step : 0 613s Time step : 0.005 613s Per MPI rank memory allocation (min/avg/max) = 3.513 | 3.513 | 3.513 Mbytes 613s Step Temp E_pair E_mol TotEng Press 613s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 613s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 613s Loop time of 0.295766 on 1 procs for 100 steps with 4000 atoms 613s 613s Performance: 146061.598 tau/day, 338.106 timesteps/s, 1.352 Matom-step/s 613s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 613s 613s MPI task timing breakdown: 613s Section | min time | avg time | max time |%varavg| %total 613s --------------------------------------------------------------- 613s Pair | 0.24683 | 0.24683 | 0.24683 | 0.0 | 83.46 613s Neigh | 0.030553 | 0.030553 | 0.030553 | 0.0 | 10.33 613s Comm | 0.010236 | 0.010236 | 0.010236 | 0.0 | 3.46 613s Output | 0.00014908 | 0.00014908 | 0.00014908 | 0.0 | 0.05 613s Modify | 0.0055255 | 0.0055255 | 0.0055255 | 0.0 | 1.87 613s Other | | 0.002469 | | | 0.83 613s 613s Nlocal: 4000 ave 4000 max 4000 min 613s Histogram: 1 0 0 0 0 0 0 0 0 0 613s Nghost: 5758 ave 5758 max 5758 min 613s Histogram: 1 0 0 0 0 0 0 0 0 0 613s Neighs: 150488 ave 150488 max 150488 min 613s Histogram: 1 0 0 0 0 0 0 0 0 0 613s 613s Total # of neighbors = 150488 613s Ave neighs/atom = 37.622 613s Neighbor list builds = 5 613s Dangerous builds not checked 613s 613s Python output: 613s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 613s Temperature from compute = 0.7683848148006243 613s Energy from equal-style variable = -5.774392400140558 613s Velocity component from atom-style variable = -0.16696430269966717 613s Volume from get_thermo = 4738.213693437576 613s Natoms from get_natoms = 4000 613s Global coords from gather_atoms = 16.651271530416228 16.79001077301678 0.19047524160173676 613s Changed x[0][0] via scatter_atoms = 17.651271530416228 613s Total wall time: 0:00:00 614s autopkgtest [02:29:40]: test command1: -----------------------] 617s autopkgtest [02:29:43]: test command1: - - - - - - - - - - results - - - - - - - - - - 617s command1 PASS 621s autopkgtest [02:29:47]: @@@@@@@@@@@@@@@@@@@@ summary 621s crack PASS 621s dipole PASS 621s ellipse PASS 621s flow PASS 621s friction PASS 621s hugo PASS 621s command1 PASS