0s autopkgtest [00:40:39]: starting date and time: 2025-05-03 00:40:39+0000 0s autopkgtest [00:40:39]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [00:40:39]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.abhrw7ur/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,localhost,localdomain,internal,login.ubuntu.com,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3.13 --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3.13/3.13.3-2 -- lxd -r lxd-armhf-10.145.243.197 lxd-armhf-10.145.243.197:autopkgtest/ubuntu/questing/armhf 21s autopkgtest [00:41:00]: testbed dpkg architecture: armhf 23s autopkgtest [00:41:02]: testbed apt version: 3.0.0 26s autopkgtest [00:41:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [00:41:07]: testbed release detected to be: None 36s autopkgtest [00:41:15]: updating testbed package index (apt update) 37s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 38s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 38s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 38s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 38s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.1 kB] 38s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1947 kB] 38s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB] 38s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [205 kB] 38s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1371 kB] 38s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.9 kB] 38s Get:11 http://ftpmaster.internal/ubuntu questing/main Sources [1397 kB] 39s Get:12 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 39s Get:13 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 40s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 40s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [15.4 MB] 40s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 44s Fetched 43.9 MB in 6s (6908 kB/s) 45s Reading package lists... 50s autopkgtest [00:41:29]: upgrading testbed (apt dist-upgrade and autopurge) 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 53s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 53s Starting 2 pkgProblemResolver with broken count: 0 53s Done 54s Entering ResolveByKeep 54s 54s Calculating upgrade... 55s The following packages will be upgraded: 55s base-files distro-info-data dpkg dpkg-dev ed fwupd htop libdpkg-perl 55s libftdi1-2 libfwupd3 libnpth0t64 libpython3.13-minimal libpython3.13-stdlib 55s libsensors-config libsensors5 liburcu8t64 motd-news-config nano python3.13 55s python3.13-gdbm python3.13-minimal ubuntu-pro-client ubuntu-pro-client-l10n 55s usb.ids 55s 24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 11.0 MB of archives. 55s After this operation, 3722 kB disk space will be freed. 55s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 55s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 55s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 56s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main armhf python3.13 armhf 3.13.3-2 [739 kB] 56s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main armhf libpython3.13-stdlib armhf 3.13.3-2 [1945 kB] 56s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main armhf python3.13-minimal armhf 3.13.3-2 [2017 kB] 56s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main armhf libpython3.13-minimal armhf 3.13.3-2 [871 kB] 56s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 56s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 56s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 56s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 56s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 56s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 56s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 56s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 56s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 56s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 56s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 56s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 56s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 56s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 56s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 56s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 56s Get:24 http://ftpmaster.internal/ubuntu questing-proposed/main armhf python3.13-gdbm armhf 3.13.3-2 [30.4 kB] 57s Fetched 11.0 MB in 1s (9897 kB/s) 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 57s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 57s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 57s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 57s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 57s Setting up base-files (13.7ubuntu1) ... 57s Installing new version of config file /etc/issue ... 57s Installing new version of config file /etc/issue.net ... 57s Installing new version of config file /etc/lsb-release ... 58s motd-news.service is a disabled or a static unit not running, not starting it. 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 58s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 58s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 58s Setting up dpkg (1.22.18ubuntu3) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 58s Preparing to unpack .../python3.13_3.13.3-2_armhf.deb ... 58s Unpacking python3.13 (3.13.3-2) over (3.13.3-1) ... 58s Preparing to unpack .../libpython3.13-stdlib_3.13.3-2_armhf.deb ... 58s Unpacking libpython3.13-stdlib:armhf (3.13.3-2) over (3.13.3-1) ... 59s Preparing to unpack .../python3.13-minimal_3.13.3-2_armhf.deb ... 59s Unpacking python3.13-minimal (3.13.3-2) over (3.13.3-1) ... 59s Preparing to unpack .../libpython3.13-minimal_3.13.3-2_armhf.deb ... 59s Unpacking libpython3.13-minimal:armhf (3.13.3-2) over (3.13.3-1) ... 59s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 59s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 59s Setting up libnpth0t64:armhf (1.8-3) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 59s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 59s Unpacking distro-info-data (0.64) over (0.63) ... 59s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 59s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 59s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 59s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 59s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 59s Unpacking ed (1.21.1-1) over (1.21-1) ... 60s Preparing to unpack .../04-libsensors-config_1%3a3.6.2-2_all.deb ... 60s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 60s Preparing to unpack .../05-libsensors5_1%3a3.6.2-2_armhf.deb ... 60s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 60s Preparing to unpack .../06-liburcu8t64_0.15.2-2_armhf.deb ... 60s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 60s Preparing to unpack .../07-nano_8.4-1_armhf.deb ... 60s Unpacking nano (8.4-1) over (8.3-1) ... 60s Preparing to unpack .../08-usb.ids_2025.04.01-1_all.deb ... 60s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 60s Preparing to unpack .../09-dpkg-dev_1.22.18ubuntu3_all.deb ... 60s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 60s Preparing to unpack .../10-libdpkg-perl_1.22.18ubuntu3_all.deb ... 60s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 60s Preparing to unpack .../11-fwupd_2.0.8-3_armhf.deb ... 60s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 60s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 60s Preparing to unpack .../12-libfwupd3_2.0.8-3_armhf.deb ... 60s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 60s Preparing to unpack .../13-htop_3.4.1-4_armhf.deb ... 60s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 60s Preparing to unpack .../14-libftdi1-2_1.5-10_armhf.deb ... 60s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 60s Preparing to unpack .../15-python3.13-gdbm_3.13.3-2_armhf.deb ... 60s Unpacking python3.13-gdbm (3.13.3-2) over (3.13.3-1) ... 60s Setting up motd-news-config (13.7ubuntu1) ... 60s Setting up liburcu8t64:armhf (0.15.2-2) ... 60s Setting up distro-info-data (0.64) ... 60s Setting up htop (3.4.1-4) ... 60s Setting up libsensors-config (1:3.6.2-2) ... 60s Installing new version of config file /etc/sensors3.conf ... 60s Setting up libfwupd3:armhf (2.0.8-3) ... 60s Setting up libpython3.13-minimal:armhf (3.13.3-2) ... 60s Setting up libftdi1-2:armhf (1.5-10) ... 60s Setting up ed (1.21.1-1) ... 60s Setting up usb.ids (2025.04.01-1) ... 60s Setting up libsensors5:armhf (1:3.6.2-2) ... 60s Setting up libdpkg-perl (1.22.18ubuntu3) ... 60s Setting up nano (8.4-1) ... 60s Installing new version of config file /etc/nanorc ... 60s Setting up python3.13-minimal (3.13.3-2) ... 61s Setting up libpython3.13-stdlib:armhf (3.13.3-2) ... 61s Setting up ubuntu-pro-client (35.1ubuntu0) ... 62s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 62s 62s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 62s 62s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 62s 63s Setting up fwupd (2.0.8-3) ... 64s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 64s fwupd.service is a disabled or a static unit not running, not starting it. 64s Setting up python3.13-gdbm (3.13.3-2) ... 64s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 64s Setting up python3.13 (3.13.3-2) ... 65s Setting up dpkg-dev (1.22.18ubuntu3) ... 65s Processing triggers for dbus (1.16.2-2ubuntu1) ... 65s Processing triggers for install-info (7.1.1-1) ... 66s Processing triggers for libc-bin (2.41-6ubuntu1) ... 66s Processing triggers for systemd (257.4-1ubuntu3) ... 66s Processing triggers for man-db (2.13.0-1) ... 68s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 68s Processing triggers for initramfs-tools (0.147ubuntu1) ... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s Starting pkgProblemResolver with broken count: 0 71s Starting 2 pkgProblemResolver with broken count: 0 71s Done 71s Solving dependencies... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s autopkgtest [00:41:53]: rebooting testbed after setup commands that affected boot 112s autopkgtest [00:42:31]: testbed running kernel: Linux 6.8.0-58-generic #60~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Mar 28 14:48:37 UTC 2 136s autopkgtest [00:42:55]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 171s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 171s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 171s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 171s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 171s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 171s gpgv: Can't check signature: No public key 171s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 176s autopkgtest [00:43:35]: testing package lammps version 20240207+dfsg-3build3 178s autopkgtest [00:43:37]: build not needed 203s autopkgtest [00:44:02]: test crack: preparing testbed 204s Reading package lists... 205s Building dependency tree... 205s Reading state information... 205s Starting pkgProblemResolver with broken count: 0 205s Starting 2 pkgProblemResolver with broken count: 0 205s Done 206s The following NEW packages will be installed: 206s fontconfig-config fonts-dejavu-core fonts-dejavu-mono hwloc-nox lammps 206s lammps-data libaec0 libblas3 libcairo2 libdeflate0 libdouble-conversion3 206s libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 206s libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 206s libgomp1 libhdf5-310 libhdf5-hl-310 libhwloc15 libjbig0 libjpeg-turbo8 206s libjpeg8 libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 liblerc4 206s libllvm19 libmpich12 libnetcdf22 libogg0 libopengl0 libpixman-1-0 libproj25 206s libpython3.13 libsharpyuv0 libslurm42t64 libsz2 libtbb12 libtbbbind-2-5 206s libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 206s libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 206s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 206s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxrender1 libxshmfence1 206s libxss1 libxxf86vm1 mesa-libgallium mpi-default-bin mpich proj-data 206s x11-common 206s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 206s Need to get 101 MB of archives. 206s After this operation, 389 MB of additional disk space will be used. 206s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 207s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 207s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig-config armhf 2.15.0-2.2ubuntu1 [37.9 kB] 207s Get:4 http://ftpmaster.internal/ubuntu questing/universe armhf lammps-data all 20240207+dfsg-3build3 [9732 kB] 207s Get:5 http://ftpmaster.internal/ubuntu questing/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 207s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf libblas3 armhf 3.12.1-2 [132 kB] 207s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 207s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf libfontconfig1 armhf 2.15.0-2.2ubuntu1 [114 kB] 207s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 207s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 207s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 207s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 207s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf libcairo2 armhf 1.18.4-1 [483 kB] 207s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 207s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf libdouble-conversion3 armhf 3.3.1-1 [39.1 kB] 207s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf libgomp1 armhf 15-20250404-0ubuntu1 [128 kB] 207s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build1 [369 kB] 207s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libwayland-server0 armhf 1.23.1-3 [30.3 kB] 207s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libllvm19 armhf 1:19.1.7-3ubuntu1 [27.8 MB] 208s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 208s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 208s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 208s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 208s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 208s Get:25 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 208s Get:26 http://ftpmaster.internal/ubuntu questing/main armhf libxshmfence1 armhf 1.3.3-1 [4948 B] 208s Get:27 http://ftpmaster.internal/ubuntu questing/main armhf mesa-libgallium armhf 25.0.3-1ubuntu2 [8260 kB] 208s Get:28 http://ftpmaster.internal/ubuntu questing/main armhf libgbm1 armhf 25.0.3-1ubuntu2 [29.0 kB] 208s Get:29 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran5 armhf 15-20250404-0ubuntu1 [331 kB] 208s Get:30 http://ftpmaster.internal/ubuntu questing/main armhf libvulkan1 armhf 1.4.304.0-1 [127 kB] 208s Get:31 http://ftpmaster.internal/ubuntu questing/main armhf libgl1-mesa-dri armhf 25.0.3-1ubuntu2 [32.0 kB] 208s Get:32 http://ftpmaster.internal/ubuntu questing/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 208s Get:33 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 208s Get:34 http://ftpmaster.internal/ubuntu questing/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 208s Get:35 http://ftpmaster.internal/ubuntu questing/main armhf libglx-mesa0 armhf 25.0.3-1ubuntu2 [120 kB] 208s Get:36 http://ftpmaster.internal/ubuntu questing/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 208s Get:37 http://ftpmaster.internal/ubuntu questing/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 208s Get:38 http://ftpmaster.internal/ubuntu questing/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB] 208s Get:39 http://ftpmaster.internal/ubuntu questing/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 208s Get:40 http://ftpmaster.internal/ubuntu questing/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 208s Get:41 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 208s Get:42 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB] 208s Get:43 http://ftpmaster.internal/ubuntu questing/universe armhf libhwloc15 armhf 2.12.0-1 [147 kB] 208s Get:44 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 208s Get:45 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 208s Get:46 http://ftpmaster.internal/ubuntu questing/main armhf libjsoncpp26 armhf 1.9.6-3 [75.5 kB] 208s Get:47 http://ftpmaster.internal/ubuntu questing/universe armhf libkim-api2 armhf 2.3.0-1ubuntu1 [566 kB] 208s Get:48 http://ftpmaster.internal/ubuntu questing/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 208s Get:49 http://ftpmaster.internal/ubuntu questing/universe armhf libmpich12 armhf 4.2.1-5 [1574 kB] 208s Get:50 http://ftpmaster.internal/ubuntu questing/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB] 208s Get:51 http://ftpmaster.internal/ubuntu questing-proposed/main armhf libpython3.13 armhf 3.13.3-2 [2082 kB] 209s Get:52 http://ftpmaster.internal/ubuntu questing/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 209s Get:53 http://ftpmaster.internal/ubuntu questing/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB] 209s Get:54 http://ftpmaster.internal/ubuntu questing/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 209s Get:55 http://ftpmaster.internal/ubuntu questing/universe armhf proj-data all 9.5.1-1 [7924 kB] 209s Get:56 http://ftpmaster.internal/ubuntu questing/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 209s Get:57 http://ftpmaster.internal/ubuntu questing/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 209s Get:58 http://ftpmaster.internal/ubuntu questing/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 209s Get:59 http://ftpmaster.internal/ubuntu questing/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 209s Get:60 http://ftpmaster.internal/ubuntu questing/main armhf libtiff6 armhf 4.7.0-3ubuntu1 [184 kB] 209s Get:61 http://ftpmaster.internal/ubuntu questing/universe armhf libproj25 armhf 9.5.1-1 [1331 kB] 209s Get:62 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbbind-2-5 armhf 2022.0.0-2 [13.8 kB] 209s Get:63 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbmalloc2 armhf 2022.0.0-2 [47.0 kB] 209s Get:64 http://ftpmaster.internal/ubuntu questing/universe armhf libtbb12 armhf 2022.0.0-2 [80.8 kB] 209s Get:65 http://ftpmaster.internal/ubuntu questing/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 209s Get:66 http://ftpmaster.internal/ubuntu questing/main armhf libtheoradec1 armhf 1.2.0~alpha1+dfsg-6 [45.8 kB] 209s Get:67 http://ftpmaster.internal/ubuntu questing/main armhf libtheoraenc1 armhf 1.2.0~alpha1+dfsg-6 [91.8 kB] 209s Get:68 http://ftpmaster.internal/ubuntu questing/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 209s Get:69 http://ftpmaster.internal/ubuntu questing/main armhf x11-common all 1:7.7+23ubuntu4 [21.8 kB] 209s Get:70 http://ftpmaster.internal/ubuntu questing/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 209s Get:71 http://ftpmaster.internal/ubuntu questing/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 209s Get:72 http://ftpmaster.internal/ubuntu questing/universe armhf libvtk9.3 armhf 9.3.0+dfsg1-4ubuntu1 [21.9 MB] 210s Get:73 http://ftpmaster.internal/ubuntu questing/universe armhf liblammps0t64 armhf 20240207+dfsg-3build3 [6801 kB] 210s Get:74 http://ftpmaster.internal/ubuntu questing/universe armhf libslurm42t64 armhf 24.11.3-2 [769 kB] 210s Get:75 http://ftpmaster.internal/ubuntu questing/universe armhf hwloc-nox armhf 2.12.0-1 [213 kB] 210s Get:76 http://ftpmaster.internal/ubuntu questing/universe armhf mpich armhf 4.2.1-5 [214 kB] 210s Get:77 http://ftpmaster.internal/ubuntu questing/universe armhf mpi-default-bin armhf 1.18 [2504 B] 210s Get:78 http://ftpmaster.internal/ubuntu questing/universe armhf lammps armhf 20240207+dfsg-3build3 [14.7 kB] 210s Fetched 101 MB in 4s (28.1 MB/s) 210s Selecting previously unselected package fonts-dejavu-mono. 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63951 files and directories currently installed.) 210s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 210s Unpacking fonts-dejavu-mono (2.37-8) ... 210s Selecting previously unselected package fonts-dejavu-core. 210s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 210s Unpacking fonts-dejavu-core (2.37-8) ... 210s Selecting previously unselected package fontconfig-config. 210s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_armhf.deb ... 211s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 211s Selecting previously unselected package lammps-data. 211s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 211s Unpacking lammps-data (20240207+dfsg-3build3) ... 211s Selecting previously unselected package libaec0:armhf. 211s Preparing to unpack .../04-libaec0_1.1.3-1_armhf.deb ... 211s Unpacking libaec0:armhf (1.1.3-1) ... 211s Selecting previously unselected package libblas3:armhf. 211s Preparing to unpack .../05-libblas3_3.12.1-2_armhf.deb ... 211s Unpacking libblas3:armhf (3.12.1-2) ... 211s Selecting previously unselected package libfreetype6:armhf. 211s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 211s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 211s Selecting previously unselected package libfontconfig1:armhf. 211s Preparing to unpack .../07-libfontconfig1_2.15.0-2.2ubuntu1_armhf.deb ... 211s Unpacking libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 211s Selecting previously unselected package libpixman-1-0:armhf. 211s Preparing to unpack .../08-libpixman-1-0_0.44.0-3_armhf.deb ... 211s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 211s Selecting previously unselected package libxcb-render0:armhf. 211s Preparing to unpack .../09-libxcb-render0_1.17.0-2_armhf.deb ... 211s Unpacking libxcb-render0:armhf (1.17.0-2) ... 211s Selecting previously unselected package libxcb-shm0:armhf. 211s Preparing to unpack .../10-libxcb-shm0_1.17.0-2_armhf.deb ... 211s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 211s Selecting previously unselected package libxrender1:armhf. 211s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 211s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 211s Selecting previously unselected package libcairo2:armhf. 211s Preparing to unpack .../12-libcairo2_1.18.4-1_armhf.deb ... 211s Unpacking libcairo2:armhf (1.18.4-1) ... 211s Selecting previously unselected package libdeflate0:armhf. 211s Preparing to unpack .../13-libdeflate0_1.23-1_armhf.deb ... 211s Unpacking libdeflate0:armhf (1.23-1) ... 211s Selecting previously unselected package libdouble-conversion3:armhf. 211s Preparing to unpack .../14-libdouble-conversion3_3.3.1-1_armhf.deb ... 211s Unpacking libdouble-conversion3:armhf (3.3.1-1) ... 211s Selecting previously unselected package libgomp1:armhf. 211s Preparing to unpack .../15-libgomp1_15-20250404-0ubuntu1_armhf.deb ... 211s Unpacking libgomp1:armhf (15-20250404-0ubuntu1) ... 211s Selecting previously unselected package libfftw3-double3:armhf. 211s Preparing to unpack .../16-libfftw3-double3_3.3.10-2fakesync1build1_armhf.deb ... 211s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 211s Selecting previously unselected package libwayland-server0:armhf. 211s Preparing to unpack .../17-libwayland-server0_1.23.1-3_armhf.deb ... 211s Unpacking libwayland-server0:armhf (1.23.1-3) ... 212s Selecting previously unselected package libllvm19:armhf. 212s Preparing to unpack .../18-libllvm19_1%3a19.1.7-3ubuntu1_armhf.deb ... 212s Unpacking libllvm19:armhf (1:19.1.7-3ubuntu1) ... 212s Selecting previously unselected package libx11-xcb1:armhf. 212s Preparing to unpack .../19-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 212s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 212s Selecting previously unselected package libxcb-dri3-0:armhf. 212s Preparing to unpack .../20-libxcb-dri3-0_1.17.0-2_armhf.deb ... 212s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 212s Selecting previously unselected package libxcb-present0:armhf. 212s Preparing to unpack .../21-libxcb-present0_1.17.0-2_armhf.deb ... 212s Unpacking libxcb-present0:armhf (1.17.0-2) ... 212s Selecting previously unselected package libxcb-randr0:armhf. 212s Preparing to unpack .../22-libxcb-randr0_1.17.0-2_armhf.deb ... 212s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 212s Selecting previously unselected package libxcb-sync1:armhf. 213s Preparing to unpack .../23-libxcb-sync1_1.17.0-2_armhf.deb ... 213s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 213s Selecting previously unselected package libxcb-xfixes0:armhf. 213s Preparing to unpack .../24-libxcb-xfixes0_1.17.0-2_armhf.deb ... 213s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 213s Selecting previously unselected package libxshmfence1:armhf. 213s Preparing to unpack .../25-libxshmfence1_1.3.3-1_armhf.deb ... 213s Unpacking libxshmfence1:armhf (1.3.3-1) ... 213s Selecting previously unselected package mesa-libgallium:armhf. 213s Preparing to unpack .../26-mesa-libgallium_25.0.3-1ubuntu2_armhf.deb ... 213s Unpacking mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 213s Selecting previously unselected package libgbm1:armhf. 213s Preparing to unpack .../27-libgbm1_25.0.3-1ubuntu2_armhf.deb ... 213s Unpacking libgbm1:armhf (25.0.3-1ubuntu2) ... 213s Selecting previously unselected package libgfortran5:armhf. 213s Preparing to unpack .../28-libgfortran5_15-20250404-0ubuntu1_armhf.deb ... 213s Unpacking libgfortran5:armhf (15-20250404-0ubuntu1) ... 213s Selecting previously unselected package libvulkan1:armhf. 213s Preparing to unpack .../29-libvulkan1_1.4.304.0-1_armhf.deb ... 213s Unpacking libvulkan1:armhf (1.4.304.0-1) ... 213s Selecting previously unselected package libgl1-mesa-dri:armhf. 213s Preparing to unpack .../30-libgl1-mesa-dri_25.0.3-1ubuntu2_armhf.deb ... 213s Unpacking libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 213s Selecting previously unselected package libglvnd0:armhf. 213s Preparing to unpack .../31-libglvnd0_1.7.0-1build1_armhf.deb ... 213s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 213s Selecting previously unselected package libxcb-glx0:armhf. 213s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_armhf.deb ... 213s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 213s Selecting previously unselected package libxxf86vm1:armhf. 213s Preparing to unpack .../33-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 213s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 213s Selecting previously unselected package libglx-mesa0:armhf. 213s Preparing to unpack .../34-libglx-mesa0_25.0.3-1ubuntu2_armhf.deb ... 213s Unpacking libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 213s Selecting previously unselected package libglx0:armhf. 213s Preparing to unpack .../35-libglx0_1.7.0-1build1_armhf.deb ... 213s Unpacking libglx0:armhf (1.7.0-1build1) ... 213s Selecting previously unselected package libgl1:armhf. 213s Preparing to unpack .../36-libgl1_1.7.0-1build1_armhf.deb ... 213s Unpacking libgl1:armhf (1.7.0-1build1) ... 213s Selecting previously unselected package libgl2ps1.4. 213s Preparing to unpack .../37-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ... 213s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 213s Selecting previously unselected package libglew2.2:armhf. 213s Preparing to unpack .../38-libglew2.2_2.2.0-4build1_armhf.deb ... 213s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 213s Selecting previously unselected package libsz2:armhf. 213s Preparing to unpack .../39-libsz2_1.1.3-1_armhf.deb ... 213s Unpacking libsz2:armhf (1.1.3-1) ... 213s Selecting previously unselected package libhdf5-310:armhf. 213s Preparing to unpack .../40-libhdf5-310_1.14.5+repack-3_armhf.deb ... 213s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 213s Selecting previously unselected package libhdf5-hl-310:armhf. 213s Preparing to unpack .../41-libhdf5-hl-310_1.14.5+repack-3_armhf.deb ... 213s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3) ... 213s Selecting previously unselected package libhwloc15:armhf. 213s Preparing to unpack .../42-libhwloc15_2.12.0-1_armhf.deb ... 213s Unpacking libhwloc15:armhf (2.12.0-1) ... 213s Selecting previously unselected package libjpeg-turbo8:armhf. 213s Preparing to unpack .../43-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 213s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 213s Selecting previously unselected package libjpeg8:armhf. 213s Preparing to unpack .../44-libjpeg8_8c-2ubuntu11_armhf.deb ... 213s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 213s Selecting previously unselected package libjsoncpp26:armhf. 213s Preparing to unpack .../45-libjsoncpp26_1.9.6-3_armhf.deb ... 213s Unpacking libjsoncpp26:armhf (1.9.6-3) ... 213s Selecting previously unselected package libkim-api2:armhf. 213s Preparing to unpack .../46-libkim-api2_2.3.0-1ubuntu1_armhf.deb ... 214s Unpacking libkim-api2:armhf (2.3.0-1ubuntu1) ... 214s Selecting previously unselected package liblapack3:armhf. 214s Preparing to unpack .../47-liblapack3_3.12.1-2_armhf.deb ... 214s Unpacking liblapack3:armhf (3.12.1-2) ... 214s Selecting previously unselected package libmpich12:armhf. 214s Preparing to unpack .../48-libmpich12_4.2.1-5_armhf.deb ... 214s Unpacking libmpich12:armhf (4.2.1-5) ... 214s Selecting previously unselected package libnetcdf22:armhf. 214s Preparing to unpack .../49-libnetcdf22_1%3a4.9.3-1_armhf.deb ... 214s Unpacking libnetcdf22:armhf (1:4.9.3-1) ... 214s Selecting previously unselected package libpython3.13:armhf. 214s Preparing to unpack .../50-libpython3.13_3.13.3-2_armhf.deb ... 214s Unpacking libpython3.13:armhf (3.13.3-2) ... 214s Selecting previously unselected package libvoro++1. 214s Preparing to unpack .../51-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 214s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 214s Selecting previously unselected package libogg0:armhf. 214s Preparing to unpack .../52-libogg0_1.3.5-3build1_armhf.deb ... 214s Unpacking libogg0:armhf (1.3.5-3build1) ... 214s Selecting previously unselected package libopengl0:armhf. 214s Preparing to unpack .../53-libopengl0_1.7.0-1build1_armhf.deb ... 214s Unpacking libopengl0:armhf (1.7.0-1build1) ... 214s Selecting previously unselected package proj-data. 214s Preparing to unpack .../54-proj-data_9.5.1-1_all.deb ... 214s Unpacking proj-data (9.5.1-1) ... 214s Selecting previously unselected package libjbig0:armhf. 214s Preparing to unpack .../55-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 214s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 214s Selecting previously unselected package liblerc4:armhf. 214s Preparing to unpack .../56-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 214s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 214s Selecting previously unselected package libsharpyuv0:armhf. 214s Preparing to unpack .../57-libsharpyuv0_1.5.0-0.1_armhf.deb ... 214s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 214s Selecting previously unselected package libwebp7:armhf. 214s Preparing to unpack .../58-libwebp7_1.5.0-0.1_armhf.deb ... 214s Unpacking libwebp7:armhf (1.5.0-0.1) ... 214s Selecting previously unselected package libtiff6:armhf. 214s Preparing to unpack .../59-libtiff6_4.7.0-3ubuntu1_armhf.deb ... 214s Unpacking libtiff6:armhf (4.7.0-3ubuntu1) ... 214s Selecting previously unselected package libproj25:armhf. 214s Preparing to unpack .../60-libproj25_9.5.1-1_armhf.deb ... 214s Unpacking libproj25:armhf (9.5.1-1) ... 214s Selecting previously unselected package libtbbbind-2-5:armhf. 214s Preparing to unpack .../61-libtbbbind-2-5_2022.0.0-2_armhf.deb ... 214s Unpacking libtbbbind-2-5:armhf (2022.0.0-2) ... 214s Selecting previously unselected package libtbbmalloc2:armhf. 214s Preparing to unpack .../62-libtbbmalloc2_2022.0.0-2_armhf.deb ... 214s Unpacking libtbbmalloc2:armhf (2022.0.0-2) ... 214s Selecting previously unselected package libtbb12:armhf. 214s Preparing to unpack .../63-libtbb12_2022.0.0-2_armhf.deb ... 214s Unpacking libtbb12:armhf (2022.0.0-2) ... 214s Selecting previously unselected package libtcl8.6:armhf. 214s Preparing to unpack .../64-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 214s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 215s Selecting previously unselected package libtheoradec1:armhf. 215s Preparing to unpack .../65-libtheoradec1_1.2.0~alpha1+dfsg-6_armhf.deb ... 215s Unpacking libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ... 215s Selecting previously unselected package libtheoraenc1:armhf. 215s Preparing to unpack .../66-libtheoraenc1_1.2.0~alpha1+dfsg-6_armhf.deb ... 215s Unpacking libtheoraenc1:armhf (1.2.0~alpha1+dfsg-6) ... 215s Selecting previously unselected package libxft2:armhf. 215s Preparing to unpack .../67-libxft2_2.3.6-1build1_armhf.deb ... 215s Unpacking libxft2:armhf (2.3.6-1build1) ... 215s Selecting previously unselected package x11-common. 215s Preparing to unpack .../68-x11-common_1%3a7.7+23ubuntu4_all.deb ... 215s Unpacking x11-common (1:7.7+23ubuntu4) ... 215s Selecting previously unselected package libxss1:armhf. 215s Preparing to unpack .../69-libxss1_1%3a1.2.3-1build3_armhf.deb ... 215s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 215s Selecting previously unselected package libtk8.6:armhf. 215s Preparing to unpack .../70-libtk8.6_8.6.16-1_armhf.deb ... 215s Unpacking libtk8.6:armhf (8.6.16-1) ... 215s Selecting previously unselected package libvtk9.3:armhf. 215s Preparing to unpack .../71-libvtk9.3_9.3.0+dfsg1-4ubuntu1_armhf.deb ... 215s Unpacking libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 216s Selecting previously unselected package liblammps0t64:armhf. 216s Preparing to unpack .../72-liblammps0t64_20240207+dfsg-3build3_armhf.deb ... 216s Unpacking liblammps0t64:armhf (20240207+dfsg-3build3) ... 216s Selecting previously unselected package libslurm42t64. 216s Preparing to unpack .../73-libslurm42t64_24.11.3-2_armhf.deb ... 216s Unpacking libslurm42t64 (24.11.3-2) ... 216s Selecting previously unselected package hwloc-nox. 216s Preparing to unpack .../74-hwloc-nox_2.12.0-1_armhf.deb ... 216s Unpacking hwloc-nox (2.12.0-1) ... 216s Selecting previously unselected package mpich. 216s Preparing to unpack .../75-mpich_4.2.1-5_armhf.deb ... 216s Unpacking mpich (4.2.1-5) ... 216s Selecting previously unselected package mpi-default-bin. 216s Preparing to unpack .../76-mpi-default-bin_1.18_armhf.deb ... 216s Unpacking mpi-default-bin (1.18) ... 216s Selecting previously unselected package lammps. 216s Preparing to unpack .../77-lammps_20240207+dfsg-3build3_armhf.deb ... 216s Unpacking lammps (20240207+dfsg-3build3) ... 216s Setting up libpython3.13:armhf (3.13.3-2) ... 216s Setting up libxcb-dri3-0:armhf (1.17.0-2) ... 216s Setting up libtbbmalloc2:armhf (2022.0.0-2) ... 216s Setting up libpixman-1-0:armhf (0.44.0-3) ... 216s Setting up libllvm19:armhf (1:19.1.7-3ubuntu1) ... 216s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 216s Setting up libwayland-server0:armhf (1.23.1-3) ... 216s Setting up libx11-xcb1:armhf (2:1.8.10-2) ... 216s Setting up libdouble-conversion3:armhf (3.3.1-1) ... 216s Setting up libxcb-xfixes0:armhf (1.17.0-2) ... 216s Setting up libogg0:armhf (1.3.5-3build1) ... 216s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 216s Setting up proj-data (9.5.1-1) ... 216s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 216s Setting up lammps-data (20240207+dfsg-3build3) ... 216s Setting up libxcb-render0:armhf (1.17.0-2) ... 216s Setting up libglvnd0:armhf (1.7.0-1build1) ... 216s Setting up libxcb-glx0:armhf (1.17.0-2) ... 216s Setting up x11-common (1:7.7+23ubuntu4) ... 217s Setting up libdeflate0:armhf (1.23-1) ... 217s Setting up libxcb-shm0:armhf (1.17.0-2) ... 217s Setting up libgomp1:armhf (15-20250404-0ubuntu1) ... 217s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 217s Setting up libaec0:armhf (1.1.3-1) ... 217s Setting up libopengl0:armhf (1.7.0-1build1) ... 217s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ... 217s Setting up libxcb-present0:armhf (1.17.0-2) ... 217s Setting up libtheoraenc1:armhf (1.2.0~alpha1+dfsg-6) ... 217s Setting up libblas3:armhf (3.12.1-2) ... 217s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 217s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 217s Setting up libxcb-sync1:armhf (1.17.0-2) ... 217s Setting up libjsoncpp26:armhf (1.9.6-3) ... 217s Setting up libslurm42t64 (24.11.3-2) ... 217s Setting up fonts-dejavu-mono (2.37-8) ... 217s Setting up libhwloc15:armhf (2.12.0-1) ... 217s Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... 217s Setting up fonts-dejavu-core (2.37-8) ... 217s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 217s Setting up libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 217s Setting up libgfortran5:armhf (15-20250404-0ubuntu1) ... 217s Setting up libvulkan1:armhf (1.4.304.0-1) ... 217s Setting up libwebp7:armhf (1.5.0-0.1) ... 217s Setting up libmpich12:armhf (4.2.1-5) ... 217s Setting up libxshmfence1:armhf (1.3.3-1) ... 217s Setting up libxcb-randr0:armhf (1.17.0-2) ... 217s Setting up libxss1:armhf (1:1.2.3-1build3) ... 217s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 217s Setting up libsz2:armhf (1.1.3-1) ... 217s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 217s Setting up mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 217s Setting up liblapack3:armhf (3.12.1-2) ... 217s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 217s Setting up libgbm1:armhf (25.0.3-1ubuntu2) ... 217s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 217s Setting up libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 217s Setting up hwloc-nox (2.12.0-1) ... 217s Setting up libkim-api2:armhf (2.3.0-1ubuntu1) ... 217s Setting up libtbbbind-2-5:armhf (2022.0.0-2) ... 217s Setting up libhdf5-310:armhf (1.14.5+repack-3) ... 217s Setting up libtiff6:armhf (4.7.0-3ubuntu1) ... 217s Setting up libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 217s Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ... 217s Setting up libxft2:armhf (2.3.6-1build1) ... 217s Setting up libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 217s Setting up libglx0:armhf (1.7.0-1build1) ... 217s Setting up libproj25:armhf (9.5.1-1) ... 217s Setting up mpich (4.2.1-5) ... 217s update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode 217s update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode 217s Setting up libtk8.6:armhf (8.6.16-1) ... 217s Setting up libnetcdf22:armhf (1:4.9.3-1) ... 217s Setting up mpi-default-bin (1.18) ... 217s Setting up libtbb12:armhf (2022.0.0-2) ... 217s Setting up libcairo2:armhf (1.18.4-1) ... 217s Setting up libgl1:armhf (1.7.0-1build1) ... 217s Setting up libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ... 217s Setting up libglew2.2:armhf (2.2.0-4build1) ... 217s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 217s Setting up libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 217s Setting up liblammps0t64:armhf (20240207+dfsg-3build3) ... 217s Setting up lammps (20240207+dfsg-3build3) ... 217s Processing triggers for man-db (2.13.0-1) ... 218s Processing triggers for libc-bin (2.41-6ubuntu1) ... 225s autopkgtest [00:44:24]: test crack: [----------------------- 227s LAMMPS (7 Feb 2024 - Update 1) 227s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 227s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 227s using 1 OpenMP thread(s) per MPI task 227s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 227s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 227s 2 by 1 by 1 MPI processor grid 227s Created 8141 atoms 227s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 227s create_atoms CPU = 0.002 seconds 227s 302 atoms in group lower 227s 302 atoms in group upper 227s 604 atoms in group boundary 227s 7537 atoms in group mobile 227s 841 atoms in group leftupper 227s 841 atoms in group leftlower 227s Setting atom values ... 227s 841 settings made for type 227s Setting atom values ... 227s 841 settings made for type 227s Setting atom values ... 227s 302 settings made for type 227s Setting atom values ... 227s 302 settings made for type 227s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 227s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 227s Neighbor list info ... 227s update: every = 1 steps, delay = 5 steps, check = yes 227s max neighbors/atom: 2000, page size: 100000 227s master list distance cutoff = 2.8 227s ghost atom cutoff = 2.8 227s binsize = 1.4, bins = 80 56 1 227s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 227s (1) pair lj/cut, perpetual 227s attributes: half, newton on 227s pair build: half/bin/atomonly/newton 227s stencil: half/bin/2d 227s bin: standard 227s Setting up Verlet run ... 227s Unit style : lj 227s Current step : 0 227s Time step : 0.003 227s Per MPI rank memory allocation (min/avg/max) = 2.784 | 2.784 | 2.784 Mbytes 227s Step Temp E_pair E_mol TotEng Press Volume 227s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 227s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 227s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 228s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 228s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 228s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 228s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 228s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 228s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 228s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 228s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 229s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 229s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 229s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 229s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 229s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 229s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 229s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 229s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 230s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 230s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 230s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 230s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 230s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 230s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 230s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 230s Loop time of 3.29206 on 2 procs for 5000 steps with 8141 atoms 230s 230s Performance: 393673.943 tau/day, 1518.804 timesteps/s, 12.365 Matom-step/s 230s 99.1% CPU use with 2 MPI tasks x 1 OpenMP threads 230s 230s MPI task timing breakdown: 230s Section | min time | avg time | max time |%varavg| %total 230s --------------------------------------------------------------- 230s Pair | 2.5817 | 2.6145 | 2.6473 | 2.0 | 79.42 230s Neigh | 0.12379 | 0.12613 | 0.12846 | 0.7 | 3.83 230s Comm | 0.13921 | 0.16343 | 0.18765 | 6.0 | 4.96 230s Output | 0.0013678 | 0.0030274 | 0.0046871 | 3.0 | 0.09 230s Modify | 0.22993 | 0.24089 | 0.25184 | 2.2 | 7.32 230s Other | | 0.1441 | | | 4.38 230s 230s Nlocal: 4070.5 ave 4085 max 4056 min 230s Histogram: 1 0 0 0 0 0 0 0 0 1 230s Nghost: 207 ave 208 max 206 min 230s Histogram: 1 0 0 0 0 0 0 0 0 1 230s Neighs: 35700 ave 35927 max 35473 min 230s Histogram: 1 0 0 0 0 0 0 0 0 1 230s 230s Total # of neighbors = 71400 230s Ave neighs/atom = 8.7704213 230s Neighbor list builds = 106 230s Dangerous builds = 0 230s Total wall time: 0:00:03 231s LAMMPS (7 Feb 2024 - Update 1) 231s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 231s using 1 OpenMP thread(s) per MPI task 231s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 231s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 231s 1 by 1 by 1 MPI processor grid 231s Created 8141 atoms 231s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 231s create_atoms CPU = 0.002 seconds 231s 302 atoms in group lower 231s 302 atoms in group upper 231s 604 atoms in group boundary 231s 7537 atoms in group mobile 231s 841 atoms in group leftupper 231s 841 atoms in group leftlower 231s Setting atom values ... 231s 841 settings made for type 231s Setting atom values ... 231s 841 settings made for type 231s Setting atom values ... 231s 302 settings made for type 231s Setting atom values ... 231s 302 settings made for type 231s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 231s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 231s Neighbor list info ... 231s update: every = 1 steps, delay = 5 steps, check = yes 231s max neighbors/atom: 2000, page size: 100000 231s master list distance cutoff = 2.8 231s ghost atom cutoff = 2.8 231s binsize = 1.4, bins = 80 56 1 231s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 231s (1) pair lj/cut, perpetual 231s attributes: half, newton on 231s pair build: half/bin/atomonly/newton 231s stencil: half/bin/2d 231s bin: standard 231s Setting up Verlet run ... 231s Unit style : lj 231s Current step : 0 231s Time step : 0.003 231s Per MPI rank memory allocation (min/avg/max) = 2.8 | 2.8 | 2.8 Mbytes 231s Step Temp E_pair E_mol TotEng Press Volume 231s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 231s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 231s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 231s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 232s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 232s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 232s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 232s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 232s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 233s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 233s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 233s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 233s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 234s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 234s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 234s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 234s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 235s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 235s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 235s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 235s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 236s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 236s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 236s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 236s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 237s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 237s Loop time of 6.14939 on 1 procs for 5000 steps with 8141 atoms 237s 237s Performance: 210752.465 tau/day, 813.088 timesteps/s, 6.619 Matom-step/s 237s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 237s 237s MPI task timing breakdown: 237s Section | min time | avg time | max time |%varavg| %total 237s --------------------------------------------------------------- 237s Pair | 5.2197 | 5.2197 | 5.2197 | 0.0 | 84.88 237s Neigh | 0.23499 | 0.23499 | 0.23499 | 0.0 | 3.82 237s Comm | 0.018957 | 0.018957 | 0.018957 | 0.0 | 0.31 237s Output | 0.0022885 | 0.0022885 | 0.0022885 | 0.0 | 0.04 237s Modify | 0.47325 | 0.47325 | 0.47325 | 0.0 | 7.70 237s Other | | 0.2002 | | | 3.26 237s 237s Nlocal: 8141 ave 8141 max 8141 min 237s Histogram: 1 0 0 0 0 0 0 0 0 0 237s Nghost: 0 ave 0 max 0 min 237s Histogram: 1 0 0 0 0 0 0 0 0 0 237s Neighs: 71389 ave 71389 max 71389 min 237s Histogram: 1 0 0 0 0 0 0 0 0 0 237s 237s Total # of neighbors = 71389 237s Ave neighs/atom = 8.7690701 237s Neighbor list builds = 100 237s Dangerous builds = 0 237s Total wall time: 0:00:06 237s run: OK 237s autopkgtest [00:44:36]: test crack: -----------------------] 241s autopkgtest [00:44:40]: test crack: - - - - - - - - - - results - - - - - - - - - - 241s crack PASS 245s autopkgtest [00:44:44]: test dipole: preparing testbed 246s Reading package lists... 247s Building dependency tree... 247s Reading state information... 247s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 248s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 255s autopkgtest [00:44:54]: test dipole: [----------------------- 258s LAMMPS (7 Feb 2024 - Update 1) 258s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 258s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 258s using 1 OpenMP thread(s) per MPI task 258s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 258s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 258s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 258s 2 by 1 by 1 MPI processor grid 258s Created 200 atoms 258s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 258s create_atoms CPU = 0.000 seconds 258s Setting atom values ... 258s 200 settings made for mass 258s Setting atom values ... 258s 200 settings made for dipole/random 258s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 258s Neighbor list info ... 258s update: every = 1 steps, delay = 0 steps, check = yes 258s max neighbors/atom: 2000, page size: 100000 258s master list distance cutoff = 2.8 258s ghost atom cutoff = 2.8 258s binsize = 1.4, bins = 13 13 2 258s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 258s (1) pair lj/cut/dipole/cut, perpetual 258s attributes: half, newton on 258s pair build: half/bin/atomonly/newton 258s stencil: half/bin/2d 258s bin: standard 258s Setting up Verlet run ... 258s Unit style : lj 258s Current step : 0 258s Time step : 0.005 258s Per MPI rank memory allocation (min/avg/max) = 4.549 | 4.549 | 4.549 Mbytes 258s Step Temp E_pair c_erot TotEng Press 258s 0 0 -2.0965715 0 -2.0965715 -2.4759659 258s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 258s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 258s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 258s 2000 0.44906427 -2.8037479 0.24422576 -2.356929 0.15010432 258s 2500 0.46058471 -2.8143585 0.25012657 -2.3560767 -0.38282545 258s 3000 0.47344306 -2.8070454 0.22839921 -2.3359696 0.0086809905 258s 3500 0.40527008 -2.7047531 0.20199859 -2.3015094 0.28576366 258s 4000 0.45532509 -2.7724376 0.22443356 -2.3193892 -0.026546855 258s 4500 0.43501879 -2.7267497 0.20510275 -2.293906 -0.063127027 258s 5000 0.42443514 -2.745851 0.24060818 -2.3235381 -0.025742709 258s 5500 0.3839334 -2.7073937 0.24270814 -2.32538 -0.07170774 258s 6000 0.42922278 -2.7478329 0.25153908 -2.3207562 -0.47398846 258s 6500 0.45362461 -2.7967795 0.2756071 -2.345423 0.064335127 258s 7000 0.426427 -2.7100719 0.21223279 -2.2857771 0.23817765 258s 7500 0.44329907 -2.7592192 0.25431233 -2.3181366 -0.48160925 258s 8000 0.45710982 -2.746352 0.23112717 -2.2915277 0.067805988 258s 8500 0.45706146 -2.7008059 0.20546196 -2.2460298 -0.11582213 258s 9000 0.46491089 -2.7354016 0.23514028 -2.2728153 -0.25398947 258s 9500 0.44183004 -2.6848933 0.22534954 -2.2452724 -0.047314023 258s 10000 0.42741048 -2.7131911 0.27211413 -2.2879177 0.12679961 258s Loop time of 0.592344 on 2 procs for 10000 steps with 200 atoms 258s 258s Performance: 7293061.618 tau/day, 16882.087 timesteps/s, 3.376 Matom-step/s 258s 96.1% CPU use with 2 MPI tasks x 1 OpenMP threads 258s 258s MPI task timing breakdown: 258s Section | min time | avg time | max time |%varavg| %total 258s --------------------------------------------------------------- 258s Pair | 0.34134 | 0.36598 | 0.39062 | 4.1 | 61.78 258s Neigh | 0.016326 | 0.017405 | 0.018485 | 0.8 | 2.94 258s Comm | 0.11157 | 0.1367 | 0.16184 | 6.8 | 23.08 258s Output | 0.00050629 | 0.00070557 | 0.00090485 | 0.0 | 0.12 258s Modify | 0.03358 | 0.03485 | 0.03612 | 0.7 | 5.88 258s Other | | 0.0367 | | | 6.20 258s 258s Nlocal: 100 ave 106 max 94 min 258s Histogram: 1 0 0 0 0 0 0 0 0 1 258s Nghost: 118.5 ave 120 max 117 min 258s Histogram: 1 0 0 0 0 0 0 0 0 1 258s Neighs: 827.5 ave 911 max 744 min 258s Histogram: 1 0 0 0 0 0 0 0 0 1 258s 258s Total # of neighbors = 1655 258s Ave neighs/atom = 8.275 258s Neighbor list builds = 692 258s Dangerous builds = 0 258s Total wall time: 0:00:00 258s LAMMPS (7 Feb 2024 - Update 1) 258s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 258s using 1 OpenMP thread(s) per MPI task 258s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 258s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 258s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 258s 1 by 1 by 1 MPI processor grid 258s Created 200 atoms 258s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 258s create_atoms CPU = 0.000 seconds 258s Setting atom values ... 258s 200 settings made for mass 258s Setting atom values ... 258s 200 settings made for dipole/random 258s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 258s Neighbor list info ... 258s update: every = 1 steps, delay = 0 steps, check = yes 258s max neighbors/atom: 2000, page size: 100000 258s master list distance cutoff = 2.8 258s ghost atom cutoff = 2.8 258s binsize = 1.4, bins = 13 13 2 258s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 258s (1) pair lj/cut/dipole/cut, perpetual 258s attributes: half, newton on 258s pair build: half/bin/atomonly/newton 258s stencil: half/bin/2d 258s bin: standard 258s Setting up Verlet run ... 258s Unit style : lj 258s Current step : 0 258s Time step : 0.005 258s Per MPI rank memory allocation (min/avg/max) = 4.55 | 4.55 | 4.55 Mbytes 258s Step Temp E_pair c_erot TotEng Press 258s 0 0 -2.0965715 0 -2.0965715 -2.4759659 258s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 258s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 258s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 258s 2000 0.44906527 -2.8037488 0.24422567 -2.3569289 0.15010101 259s 2500 0.46052127 -2.8142136 0.25010172 -2.355995 -0.38222495 259s 3000 0.48349143 -2.8019094 0.21892648 -2.3208354 -0.021940474 259s 3500 0.42818128 -2.7407155 0.22510159 -2.3146751 -0.01916692 259s 4000 0.43447865 -2.7251092 0.21179003 -2.292803 -0.054070562 259s 4500 0.49679675 -2.7760513 0.19789317 -2.2817386 -0.01374163 259s 5000 0.45369814 -2.7436186 0.22108827 -2.2921889 0.032452862 259s 5500 0.49381571 -2.8052843 0.24840557 -2.3139377 -0.011483656 259s 6000 0.47486262 -2.762914 0.230038 -2.2904257 0.35084172 259s 6500 0.47834729 -2.7628296 0.23242786 -2.286874 -0.084199114 259s 7000 0.4554671 -2.7485479 0.25152556 -2.2953581 -0.41657484 259s 7500 0.48688446 -2.7468396 0.22672266 -2.2623895 0.19798746 259s 8000 0.42093195 -2.6889197 0.24972685 -2.2700924 -0.048022487 259s 8500 0.44505913 -2.65779 0.18787506 -2.2149561 0.23409841 259s 9000 0.48102255 -2.7186808 0.22041232 -2.2400634 0.26761374 259s 9500 0.41955498 -2.688272 0.26237731 -2.2708148 0.1556688 259s 10000 0.47397757 -2.683164 0.2078595 -2.2115563 -0.21881739 259s Loop time of 0.905348 on 1 procs for 10000 steps with 200 atoms 259s 259s Performance: 4771644.750 tau/day, 11045.474 timesteps/s, 2.209 Matom-step/s 259s 97.4% CPU use with 1 MPI tasks x 1 OpenMP threads 259s 259s MPI task timing breakdown: 259s Section | min time | avg time | max time |%varavg| %total 259s --------------------------------------------------------------- 259s Pair | 0.72813 | 0.72813 | 0.72813 | 0.0 | 80.43 259s Neigh | 0.033947 | 0.033947 | 0.033947 | 0.0 | 3.75 259s Comm | 0.049484 | 0.049484 | 0.049484 | 0.0 | 5.47 259s Output | 0.00086125 | 0.00086125 | 0.00086125 | 0.0 | 0.10 259s Modify | 0.062332 | 0.062332 | 0.062332 | 0.0 | 6.88 259s Other | | 0.03059 | | | 3.38 259s 259s Nlocal: 200 ave 200 max 200 min 259s Histogram: 1 0 0 0 0 0 0 0 0 0 259s Nghost: 166 ave 166 max 166 min 259s Histogram: 1 0 0 0 0 0 0 0 0 0 259s Neighs: 1624 ave 1624 max 1624 min 259s Histogram: 1 0 0 0 0 0 0 0 0 0 259s 259s Total # of neighbors = 1624 259s Ave neighs/atom = 8.12 259s Neighbor list builds = 703 259s Dangerous builds = 0 259s Total wall time: 0:00:00 259s run: OK 260s autopkgtest [00:44:59]: test dipole: -----------------------] 263s dipole PASS 263s autopkgtest [00:45:02]: test dipole: - - - - - - - - - - results - - - - - - - - - - 267s autopkgtest [00:45:06]: test ellipse: preparing testbed 269s Reading package lists... 269s Building dependency tree... 269s Reading state information... 269s Starting pkgProblemResolver with broken count: 0 270s Starting 2 pkgProblemResolver with broken count: 0 270s Done 270s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 278s autopkgtest [00:45:17]: test ellipse: [----------------------- 280s LAMMPS (7 Feb 2024 - Update 1) 280s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 280s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 280s using 1 OpenMP thread(s) per MPI task 280s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 280s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 280s 2 by 1 by 1 MPI processor grid 280s Created 400 atoms 280s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 280s create_atoms CPU = 0.001 seconds 280s Setting atom values ... 280s 29 settings made for type/fraction 280s Setting atom values ... 280s 371 settings made for mass 280s Setting atom values ... 280s 29 settings made for mass 280s Setting atom values ... 280s 371 settings made for shape 280s Setting atom values ... 280s 29 settings made for shape 280s Setting atom values ... 280s 400 settings made for quat/random 280s 371 atoms in group spheroid 280s 280s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 280s 280s Your simulation uses code contributions which should be cited: 280s - pair gayberne command: doi:10.1063/1.3058435 280s The log file lists these citations in BibTeX format. 280s 280s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 280s 280s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 280s Neighbor list info ... 280s update: every = 1 steps, delay = 0 steps, check = yes 280s max neighbors/atom: 2000, page size: 100000 280s master list distance cutoff = 4.8 280s ghost atom cutoff = 4.8 280s binsize = 2.4, bins = 59 59 3 280s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 280s (1) pair gayberne, perpetual 280s attributes: half, newton on 280s pair build: half/bin/atomonly/newton 280s stencil: half/bin/2d 280s bin: standard 280s Setting up Verlet run ... 280s Unit style : lj 280s Current step : 0 280s Time step : 0.002 280s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 280s Step c_rot E_pair TotEng Press Volume 280s 0 2.3158404 0 2.394 0.04788 20000 280s 100 1.7101139 0 1.7678302 0.034413192 20548.286 280s 200 2.3115592 0 2.3895743 0.04649702 20556.796 280s 300 1.831333 0 1.8931405 0.041256922 18354.646 280s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 280s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 280s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 280s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 280s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 280s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 280s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 280s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 280s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 280s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 280s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 280s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 280s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 281s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 281s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 281s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 281s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 281s Loop time of 0.657055 on 2 procs for 2000 steps with 400 atoms 281s 281s Performance: 525983.424 tau/day, 3043.886 timesteps/s, 1.218 Matom-step/s 281s 92.1% CPU use with 2 MPI tasks x 1 OpenMP threads 281s 281s MPI task timing breakdown: 281s Section | min time | avg time | max time |%varavg| %total 281s --------------------------------------------------------------- 281s Pair | 0.21797 | 0.24255 | 0.26714 | 5.0 | 36.92 281s Neigh | 0.013586 | 0.014048 | 0.014509 | 0.4 | 2.14 281s Comm | 0.11418 | 0.13945 | 0.16473 | 6.8 | 21.22 281s Output | 0.01913 | 0.020071 | 0.021013 | 0.7 | 3.05 281s Modify | 0.19695 | 0.19769 | 0.19843 | 0.2 | 30.09 281s Other | | 0.04323 | | | 6.58 281s 281s Nlocal: 200 ave 211 max 189 min 281s Histogram: 1 0 0 0 0 0 0 0 0 1 281s Nghost: 215 ave 217 max 213 min 281s Histogram: 1 0 0 0 0 0 0 0 0 1 281s Neighs: 1561 ave 1651 max 1471 min 281s Histogram: 1 0 0 0 0 0 0 0 0 1 281s 281s Total # of neighbors = 3122 281s Ave neighs/atom = 7.805 281s Neighbor list builds = 346 281s Dangerous builds = 0 281s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 281s Setting up Verlet run ... 281s Unit style : lj 281s Current step : 2000 281s Time step : 0.002 281s Per MPI rank memory allocation (min/avg/max) = 6.461 | 6.461 | 6.461 Mbytes 281s Step c_rot E_pair TotEng Press Volume 281s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 281s 2100 1.9040485 -3.6005672 -1.6802923 0.39862443 989.96894 281s 2200 1.8951971 -3.5921565 -1.6947175 1.0260215 989.96894 281s 2300 2.0029243 -3.7081933 -1.6838652 0.66970186 989.96894 281s 2400 2.027189 -3.7314224 -1.7100024 0.89700378 989.96894 281s 2500 2.0661215 -3.7753463 -1.702413 0.57671879 989.96894 281s 2600 2.0610733 -3.7707904 -1.7111988 0.90914683 989.96894 281s 2700 2.0505106 -3.7599067 -1.7337499 0.65660966 989.96894 281s 2800 2.1106444 -3.8219338 -1.7370714 0.55276913 989.96894 281s 2900 2.0347978 -3.7428385 -1.7135242 0.69752989 989.96894 281s 3000 2.0331089 -3.7397511 -1.7515341 0.052123917 989.96894 281s 3100 1.9983479 -3.7074978 -1.7158075 0.7551458 989.96894 281s 3200 2.1299896 -3.8449355 -1.7171591 1.055861 989.96894 281s 3300 2.079427 -3.7934717 -1.684941 1.1625179 989.96894 281s 3400 2.1499496 -3.8651326 -1.703348 0.58109397 989.96894 281s 3500 2.0901278 -3.8054829 -1.699465 1.0231781 989.96894 281s 3600 2.1041735 -3.8168043 -1.6893938 1.0813513 989.96894 281s 3700 2.0650932 -3.7777761 -1.7224926 1.3120953 989.96894 281s 3800 2.0166275 -3.7282861 -1.7416258 0.78824642 989.96894 281s 3900 2.0726099 -3.7842546 -1.7339991 0.92130013 989.96894 281s 4000 2.1298275 -3.8450909 -1.7237177 0.95785441 989.96894 281s Loop time of 0.548357 on 2 procs for 2000 steps with 400 atoms 281s 281s Performance: 630246.893 tau/day, 3647.262 timesteps/s, 1.459 Matom-step/s 281s 92.5% CPU use with 2 MPI tasks x 1 OpenMP threads 281s 281s MPI task timing breakdown: 281s Section | min time | avg time | max time |%varavg| %total 281s --------------------------------------------------------------- 281s Pair | 0.30416 | 0.30477 | 0.30537 | 0.1 | 55.58 281s Neigh | 0.0031621 | 0.0035264 | 0.0038907 | 0.6 | 0.64 281s Comm | 0.11274 | 0.11381 | 0.11487 | 0.3 | 20.75 281s Output | 0.016962 | 0.01789 | 0.018818 | 0.7 | 3.26 281s Modify | 0.061713 | 0.068163 | 0.074612 | 2.5 | 12.43 281s Other | | 0.04021 | | | 7.33 281s 281s Nlocal: 200 ave 228 max 172 min 281s Histogram: 1 0 0 0 0 0 0 0 0 1 281s Nghost: 209 ave 215 max 203 min 281s Histogram: 1 0 0 0 0 0 0 0 0 1 281s Neighs: 1639.5 ave 1963 max 1316 min 281s Histogram: 1 0 0 0 0 0 0 0 0 1 281s 281s Total # of neighbors = 3279 281s Ave neighs/atom = 8.1975 281s Neighbor list builds = 50 281s Dangerous builds = 0 281s Total wall time: 0:00:01 281s LAMMPS (7 Feb 2024 - Update 1) 281s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 281s using 1 OpenMP thread(s) per MPI task 281s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 281s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 281s 1 by 1 by 1 MPI processor grid 281s Created 400 atoms 281s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 281s create_atoms CPU = 0.001 seconds 281s Setting atom values ... 281s 29 settings made for type/fraction 281s Setting atom values ... 281s 371 settings made for mass 281s Setting atom values ... 281s 29 settings made for mass 281s Setting atom values ... 281s 371 settings made for shape 281s Setting atom values ... 281s 29 settings made for shape 281s Setting atom values ... 281s 400 settings made for quat/random 281s 371 atoms in group spheroid 281s 281s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 281s 281s Your simulation uses code contributions which should be cited: 281s - pair gayberne command: doi:10.1063/1.3058435 281s The log file lists these citations in BibTeX format. 281s 281s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 281s 281s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 281s Neighbor list info ... 281s update: every = 1 steps, delay = 0 steps, check = yes 281s max neighbors/atom: 2000, page size: 100000 281s master list distance cutoff = 4.8 281s ghost atom cutoff = 4.8 281s binsize = 2.4, bins = 59 59 3 281s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 281s (1) pair gayberne, perpetual 281s attributes: half, newton on 281s pair build: half/bin/atomonly/newton 281s stencil: half/bin/2d 281s bin: standard 281s Setting up Verlet run ... 281s Unit style : lj 281s Current step : 0 281s Time step : 0.002 281s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 281s Step c_rot E_pair TotEng Press Volume 281s 0 2.3158404 0 2.394 0.04788 20000 281s 100 1.7101139 0 1.7678302 0.034413192 20548.286 281s 200 2.3115592 0 2.3895743 0.04649702 20556.796 281s 300 1.831333 0 1.8931405 0.041256922 18354.646 281s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 281s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 281s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 281s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 282s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 282s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 282s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 282s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 282s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 282s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 282s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 282s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 282s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 282s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 282s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 282s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 282s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 282s Loop time of 0.83901 on 1 procs for 2000 steps with 400 atoms 282s 282s Performance: 411914.109 tau/day, 2383.762 timesteps/s, 953.505 katom-step/s 282s 93.5% CPU use with 1 MPI tasks x 1 OpenMP threads 282s 282s MPI task timing breakdown: 282s Section | min time | avg time | max time |%varavg| %total 282s --------------------------------------------------------------- 282s Pair | 0.4718 | 0.4718 | 0.4718 | 0.0 | 56.23 282s Neigh | 0.024885 | 0.024885 | 0.024885 | 0.0 | 2.97 282s Comm | 0.041823 | 0.041823 | 0.041823 | 0.0 | 4.98 282s Output | 0.025669 | 0.025669 | 0.025669 | 0.0 | 3.06 282s Modify | 0.24051 | 0.24051 | 0.24051 | 0.0 | 28.67 282s Other | | 0.03432 | | | 4.09 282s 282s Nlocal: 400 ave 400 max 400 min 282s Histogram: 1 0 0 0 0 0 0 0 0 0 282s Nghost: 276 ave 276 max 276 min 282s Histogram: 1 0 0 0 0 0 0 0 0 0 282s Neighs: 3122 ave 3122 max 3122 min 282s Histogram: 1 0 0 0 0 0 0 0 0 0 282s 282s Total # of neighbors = 3122 282s Ave neighs/atom = 7.805 282s Neighbor list builds = 346 282s Dangerous builds = 0 282s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 282s Setting up Verlet run ... 282s Unit style : lj 282s Current step : 2000 282s Time step : 0.002 282s Per MPI rank memory allocation (min/avg/max) = 6.488 | 6.488 | 6.488 Mbytes 282s Step c_rot E_pair TotEng Press Volume 282s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 282s 2100 1.9040485 -3.6005672 -1.6802923 0.39862445 989.96894 282s 2200 1.895197 -3.5921565 -1.6947175 1.0260215 989.96894 282s 2300 2.0029243 -3.7081933 -1.6838652 0.66970181 989.96894 282s 2400 2.027189 -3.7314224 -1.7100024 0.89700379 989.96894 282s 2500 2.0661215 -3.7753462 -1.702413 0.57671817 989.96894 282s 2600 2.0610736 -3.7707907 -1.7111987 0.90914701 989.96894 282s 2700 2.0505116 -3.7599078 -1.7337505 0.65660586 989.96894 283s 2800 2.1106432 -3.8219326 -1.7370705 0.55276071 989.96894 283s 2900 2.0347944 -3.7428349 -1.7135244 0.69753379 989.96894 283s 3000 2.033092 -3.739734 -1.7515318 0.05219688 989.96894 283s 3100 1.9983562 -3.707508 -1.7158135 0.75509883 989.96894 283s 3200 2.1298063 -3.8447512 -1.7171502 1.0568228 989.96894 283s 3300 2.0791428 -3.7931834 -1.6847086 1.1627829 989.96894 283s 3400 2.1498359 -3.8650337 -1.7032074 0.58032554 989.96894 283s 3500 2.0904809 -3.805739 -1.6981978 1.0208226 989.96894 283s 3600 2.1048714 -3.8174009 -1.691117 1.0550021 989.96894 283s 3700 2.0745341 -3.7874614 -1.7155849 1.3035756 989.96894 283s 3800 2.0439729 -3.7569157 -1.7364298 0.76483567 989.96894 283s 3900 2.0498921 -3.7613373 -1.7218798 1.0164212 989.96894 283s 4000 2.0584264 -3.7719072 -1.7005071 0.89500692 989.96894 283s Loop time of 0.823503 on 1 procs for 2000 steps with 400 atoms 283s 283s Performance: 419670.415 tau/day, 2428.648 timesteps/s, 971.459 katom-step/s 283s 97.2% CPU use with 1 MPI tasks x 1 OpenMP threads 283s 283s MPI task timing breakdown: 283s Section | min time | avg time | max time |%varavg| %total 283s --------------------------------------------------------------- 283s Pair | 0.60682 | 0.60682 | 0.60682 | 0.0 | 73.69 283s Neigh | 0.006741 | 0.006741 | 0.006741 | 0.0 | 0.82 283s Comm | 0.04127 | 0.04127 | 0.04127 | 0.0 | 5.01 283s Output | 0.025425 | 0.025425 | 0.025425 | 0.0 | 3.09 283s Modify | 0.11315 | 0.11315 | 0.11315 | 0.0 | 13.74 283s Other | | 0.0301 | | | 3.66 283s 283s Nlocal: 400 ave 400 max 400 min 283s Histogram: 1 0 0 0 0 0 0 0 0 0 283s Nghost: 284 ave 284 max 284 min 283s Histogram: 1 0 0 0 0 0 0 0 0 0 283s Neighs: 3286 ave 3286 max 3286 min 283s Histogram: 1 0 0 0 0 0 0 0 0 0 283s 283s Total # of neighbors = 3286 283s Ave neighs/atom = 8.215 283s Neighbor list builds = 50 283s Dangerous builds = 0 283s Total wall time: 0:00:01 283s LAMMPS (7 Feb 2024 - Update 1) 283s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 283s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 283s using 1 OpenMP thread(s) per MPI task 283s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 283s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 283s 2 by 1 by 1 MPI processor grid 283s Created 400 atoms 283s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 283s create_atoms CPU = 0.001 seconds 283s Setting atom values ... 283s 29 settings made for type/fraction 283s Setting atom values ... 283s 371 settings made for mass 283s Setting atom values ... 283s 29 settings made for mass 283s Setting atom values ... 283s 371 settings made for shape 283s Setting atom values ... 283s 29 settings made for shape 283s Setting atom values ... 283s 400 settings made for quat/random 283s 371 atoms in group spheroid 283s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 283s Neighbor list info ... 283s update: every = 1 steps, delay = 0 steps, check = yes 283s max neighbors/atom: 2000, page size: 100000 283s master list distance cutoff = 4.8 283s ghost atom cutoff = 4.8 283s binsize = 2.4, bins = 59 59 3 283s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 283s (1) pair resquared, perpetual 283s attributes: half, newton on 283s pair build: half/bin/atomonly/newton 283s stencil: half/bin/2d 283s bin: standard 283s Setting up Verlet run ... 283s Unit style : lj 283s Current step : 0 283s Time step : 0.002 283s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 283s Step c_rot E_pair TotEng Press Volume 283s 0 2.3158404 0 2.394 0.04788 20000 283s 100 1.7101139 0 1.7678302 0.034413192 20548.286 283s 200 2.3115592 0 2.3895743 0.04649702 20556.796 283s 300 1.831333 0 1.8931405 0.041256922 18354.646 283s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 283s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 283s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 283s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 283s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 284s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 284s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 284s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 284s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 284s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 284s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 284s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 284s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 284s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 284s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 284s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 284s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 284s Loop time of 0.895203 on 2 procs for 2000 steps with 400 atoms 284s 284s Performance: 386057.631 tau/day, 2234.130 timesteps/s, 893.652 katom-step/s 284s 95.3% CPU use with 2 MPI tasks x 1 OpenMP threads 284s 284s MPI task timing breakdown: 284s Section | min time | avg time | max time |%varavg| %total 284s --------------------------------------------------------------- 284s Pair | 0.48325 | 0.48904 | 0.49484 | 0.8 | 54.63 284s Neigh | 0.013909 | 0.014173 | 0.014438 | 0.2 | 1.58 284s Comm | 0.11587 | 0.12129 | 0.12672 | 1.6 | 13.55 284s Output | 0.020407 | 0.021208 | 0.022009 | 0.6 | 2.37 284s Modify | 0.20375 | 0.20676 | 0.20978 | 0.7 | 23.10 284s Other | | 0.04272 | | | 4.77 284s 284s Nlocal: 200 ave 210 max 190 min 284s Histogram: 1 0 0 0 0 0 0 0 0 1 284s Nghost: 164 ave 168 max 160 min 284s Histogram: 1 0 0 0 0 0 0 0 0 1 284s Neighs: 910 ave 958 max 862 min 284s Histogram: 1 0 0 0 0 0 0 0 0 1 284s 284s Total # of neighbors = 1820 284s Ave neighs/atom = 4.55 284s Neighbor list builds = 420 284s Dangerous builds = 0 284s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 284s Setting up Verlet run ... 284s Unit style : lj 284s Current step : 2000 284s Time step : 0.002 284s Per MPI rank memory allocation (min/avg/max) = 6.452 | 6.452 | 6.452 Mbytes 284s Step c_rot E_pair TotEng Press Volume 284s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 284s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 284s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 284s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 284s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 284s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 284s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 285s 2700 2.0106221 0.13364603 2.1384766 1.1322764 1639.6982 285s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 285s 2900 1.9922852 0.15256969 2.0956529 1.2419163 1639.6982 285s 3000 1.9618081 0.18405952 2.1392907 1.3468022 1639.6982 285s 3100 1.9208141 0.22640846 2.1223515 1.6487932 1639.6982 285s 3200 1.9201454 0.22718165 2.1360381 1.5370081 1639.6982 285s 3300 2.0073185 0.13690917 2.1185875 1.1974013 1639.6982 285s 3400 2.0179674 0.12601938 2.1227813 1.0847666 1639.6982 285s 3500 1.9561087 0.18991131 2.1150364 1.337739 1639.6982 285s 3600 1.9971228 0.14756112 2.1401422 1.2026317 1639.6982 285s 3700 1.9731706 0.1723087 2.1473857 1.273159 1639.6982 285s 3800 2.0001051 0.14443379 2.0995168 1.1502317 1639.6982 285s 3900 1.9911498 0.15371621 2.1424901 1.2279921 1639.6982 285s 4000 1.9825331 0.16267827 2.0899844 1.2154927 1639.6982 285s Loop time of 1.14539 on 2 procs for 2000 steps with 400 atoms 285s 285s Performance: 301731.128 tau/day, 1746.129 timesteps/s, 698.452 katom-step/s 285s 97.3% CPU use with 2 MPI tasks x 1 OpenMP threads 285s 285s MPI task timing breakdown: 285s Section | min time | avg time | max time |%varavg| %total 285s --------------------------------------------------------------- 285s Pair | 0.82941 | 0.87941 | 0.92941 | 5.3 | 76.78 285s Neigh | 0.0025097 | 0.0027034 | 0.0028971 | 0.4 | 0.24 285s Comm | 0.09444 | 0.14482 | 0.1952 | 13.2 | 12.64 285s Output | 0.016412 | 0.017298 | 0.018183 | 0.7 | 1.51 285s Modify | 0.058797 | 0.06239 | 0.065983 | 1.4 | 5.45 285s Other | | 0.03877 | | | 3.38 285s 285s Nlocal: 200 ave 212 max 188 min 285s Histogram: 1 0 0 0 0 0 0 0 0 1 285s Nghost: 171.5 ave 173 max 170 min 285s Histogram: 1 0 0 0 0 0 0 0 0 1 285s Neighs: 880.5 ave 946 max 815 min 285s Histogram: 1 0 0 0 0 0 0 0 0 1 285s 285s Total # of neighbors = 1761 285s Ave neighs/atom = 4.4025 285s Neighbor list builds = 49 285s Dangerous builds = 0 285s Total wall time: 0:00:02 285s LAMMPS (7 Feb 2024 - Update 1) 285s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 285s using 1 OpenMP thread(s) per MPI task 285s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 285s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 285s 1 by 1 by 1 MPI processor grid 285s Created 400 atoms 285s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 285s create_atoms CPU = 0.001 seconds 285s Setting atom values ... 285s 29 settings made for type/fraction 285s Setting atom values ... 285s 371 settings made for mass 285s Setting atom values ... 285s 29 settings made for mass 285s Setting atom values ... 285s 371 settings made for shape 285s Setting atom values ... 285s 29 settings made for shape 285s Setting atom values ... 285s 400 settings made for quat/random 285s 371 atoms in group spheroid 285s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 285s Neighbor list info ... 285s update: every = 1 steps, delay = 0 steps, check = yes 285s max neighbors/atom: 2000, page size: 100000 285s master list distance cutoff = 4.8 285s ghost atom cutoff = 4.8 285s binsize = 2.4, bins = 59 59 3 285s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 285s (1) pair resquared, perpetual 285s attributes: half, newton on 285s pair build: half/bin/atomonly/newton 285s stencil: half/bin/2d 285s bin: standard 285s Setting up Verlet run ... 285s Unit style : lj 285s Current step : 0 285s Time step : 0.002 285s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 285s Step c_rot E_pair TotEng Press Volume 285s 0 2.3158404 0 2.394 0.04788 20000 285s 100 1.7101139 0 1.7678302 0.034413192 20548.286 285s 200 2.3115592 0 2.3895743 0.04649702 20556.796 286s 300 1.831333 0 1.8931405 0.041256922 18354.646 286s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 286s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 286s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 286s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 286s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 286s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 286s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 286s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 286s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 286s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 286s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 286s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 286s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 287s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 287s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 287s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 287s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 287s Loop time of 1.34914 on 1 procs for 2000 steps with 400 atoms 287s 287s Performance: 256163.147 tau/day, 1482.426 timesteps/s, 592.970 katom-step/s 287s 96.9% CPU use with 1 MPI tasks x 1 OpenMP threads 287s 287s MPI task timing breakdown: 287s Section | min time | avg time | max time |%varavg| %total 287s --------------------------------------------------------------- 287s Pair | 0.9821 | 0.9821 | 0.9821 | 0.0 | 72.79 287s Neigh | 0.026579 | 0.026579 | 0.026579 | 0.0 | 1.97 287s Comm | 0.038448 | 0.038448 | 0.038448 | 0.0 | 2.85 287s Output | 0.026544 | 0.026544 | 0.026544 | 0.0 | 1.97 287s Modify | 0.24374 | 0.24374 | 0.24374 | 0.0 | 18.07 287s Other | | 0.03173 | | | 2.35 287s 287s Nlocal: 400 ave 400 max 400 min 287s Histogram: 1 0 0 0 0 0 0 0 0 0 287s Nghost: 206 ave 206 max 206 min 287s Histogram: 1 0 0 0 0 0 0 0 0 0 287s Neighs: 1820 ave 1820 max 1820 min 287s Histogram: 1 0 0 0 0 0 0 0 0 0 287s 287s Total # of neighbors = 1820 287s Ave neighs/atom = 4.55 287s Neighbor list builds = 420 287s Dangerous builds = 0 287s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 287s Setting up Verlet run ... 287s Unit style : lj 287s Current step : 2000 287s Time step : 0.002 287s Per MPI rank memory allocation (min/avg/max) = 6.479 | 6.479 | 6.479 Mbytes 287s Step c_rot E_pair TotEng Press Volume 287s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 287s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 287s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 287s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 287s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 287s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 287s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 287s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 288s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 288s 2900 1.9922852 0.15256971 2.0956529 1.2419164 1639.6982 288s 3000 1.9618081 0.18405952 2.1392906 1.3468022 1639.6982 288s 3100 1.9208145 0.22640808 2.1223513 1.6487904 1639.6982 288s 3200 1.9201455 0.22718157 2.136038 1.5370079 1639.6982 288s 3300 2.0073203 0.13690734 2.1185861 1.1973861 1639.6982 288s 3400 2.0179675 0.12601936 2.1227814 1.0847665 1639.6982 288s 3500 1.956107 0.18991303 2.1150378 1.3377467 1639.6982 288s 3600 1.9971207 0.14756338 2.1401427 1.2026439 1639.6982 288s 3700 1.9731785 0.17230049 2.1473634 1.2731222 1639.6982 289s 3800 2.0001027 0.14443629 2.0995017 1.1502317 1639.6982 289s 3900 1.9911478 0.15371832 2.1424588 1.2279852 1639.6982 289s 4000 1.9824541 0.16275998 2.0899755 1.2158078 1639.6982 289s Loop time of 1.90563 on 1 procs for 2000 steps with 400 atoms 289s 289s Performance: 181357.268 tau/day, 1049.521 timesteps/s, 419.808 katom-step/s 289s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads 289s 289s MPI task timing breakdown: 289s Section | min time | avg time | max time |%varavg| %total 289s --------------------------------------------------------------- 289s Pair | 1.727 | 1.727 | 1.727 | 0.0 | 90.63 289s Neigh | 0.0048481 | 0.0048481 | 0.0048481 | 0.0 | 0.25 289s Comm | 0.027373 | 0.027373 | 0.027373 | 0.0 | 1.44 289s Output | 0.025358 | 0.025358 | 0.025358 | 0.0 | 1.33 289s Modify | 0.099162 | 0.099162 | 0.099162 | 0.0 | 5.20 289s Other | | 0.0219 | | | 1.15 289s 289s Nlocal: 400 ave 400 max 400 min 289s Histogram: 1 0 0 0 0 0 0 0 0 0 289s Nghost: 215 ave 215 max 215 min 289s Histogram: 1 0 0 0 0 0 0 0 0 0 289s Neighs: 1761 ave 1761 max 1761 min 289s Histogram: 1 0 0 0 0 0 0 0 0 0 289s 289s Total # of neighbors = 1761 289s Ave neighs/atom = 4.4025 289s Neighbor list builds = 49 289s Dangerous builds = 0 289s Total wall time: 0:00:03 289s run: OK 289s autopkgtest [00:45:28]: test ellipse: -----------------------] 293s autopkgtest [00:45:32]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 293s ellipse PASS 298s autopkgtest [00:45:37]: test flow: preparing testbed 300s Reading package lists... 300s Building dependency tree... 300s Reading state information... 301s Starting pkgProblemResolver with broken count: 0 301s Starting 2 pkgProblemResolver with broken count: 0 301s Done 302s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 310s autopkgtest [00:45:49]: test flow: [----------------------- 312s LAMMPS (7 Feb 2024 - Update 1) 312s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 312s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 312s using 1 OpenMP thread(s) per MPI task 312s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 312s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 312s 2 by 1 by 1 MPI processor grid 312s Created 420 atoms 312s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 312s create_atoms CPU = 0.001 seconds 312s 60 atoms in group lower 312s 60 atoms in group upper 312s 120 atoms in group boundary 312s 300 atoms in group flow 312s Setting atom values ... 312s 60 settings made for type 312s Setting atom values ... 312s 60 settings made for type 312s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 312s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 312s Neighbor list info ... 312s update: every = 1 steps, delay = 5 steps, check = yes 312s max neighbors/atom: 2000, page size: 100000 312s master list distance cutoff = 1.42246 312s ghost atom cutoff = 1.42246 312s binsize = 0.71123, bins = 37 32 1 312s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 312s (1) pair lj/cut, perpetual 312s attributes: half, newton on 312s pair build: half/bin/atomonly/newton 312s stencil: half/bin/2d 312s bin: standard 312s Setting up Verlet run ... 312s Unit style : lj 312s Current step : 0 312s Time step : 0.003 312s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 312s Step Temp E_pair E_mol TotEng Press Volume 312s 0 1 0 0 0.71190476 0.52314537 571.54286 312s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 312s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 312s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 312s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 312s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 312s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 312s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 312s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 312s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 312s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 312s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 312s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 312s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 312s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 312s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 312s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 312s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 312s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 312s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 313s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 313s Loop time of 0.563557 on 2 procs for 10000 steps with 420 atoms 313s 313s Performance: 4599359.243 tau/day, 17744.442 timesteps/s, 7.453 Matom-step/s 313s 87.6% CPU use with 2 MPI tasks x 1 OpenMP threads 313s 313s MPI task timing breakdown: 313s Section | min time | avg time | max time |%varavg| %total 313s --------------------------------------------------------------- 313s Pair | 0.052247 | 0.057228 | 0.062208 | 2.1 | 10.15 313s Neigh | 0.022551 | 0.023702 | 0.024852 | 0.7 | 4.21 313s Comm | 0.28459 | 0.30303 | 0.32147 | 3.3 | 53.77 313s Output | 0.0015157 | 0.0019166 | 0.0023175 | 0.9 | 0.34 313s Modify | 0.043162 | 0.061225 | 0.079288 | 7.3 | 10.86 313s Other | | 0.1165 | | | 20.66 313s 313s Nlocal: 210 ave 213 max 207 min 313s Histogram: 1 0 0 0 0 0 0 0 0 1 313s Nghost: 50.5 ave 51 max 50 min 313s Histogram: 1 0 0 0 0 0 0 0 0 1 313s Neighs: 480.5 ave 492 max 469 min 313s Histogram: 1 0 0 0 0 0 0 0 0 1 313s 313s Total # of neighbors = 961 313s Ave neighs/atom = 2.2880952 313s Neighbor list builds = 964 313s Dangerous builds = 0 313s Total wall time: 0:00:00 313s LAMMPS (7 Feb 2024 - Update 1) 313s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 313s using 1 OpenMP thread(s) per MPI task 313s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 313s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 313s 1 by 1 by 1 MPI processor grid 313s Created 420 atoms 313s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 313s create_atoms CPU = 0.001 seconds 313s 60 atoms in group lower 313s 60 atoms in group upper 313s 120 atoms in group boundary 313s 300 atoms in group flow 313s Setting atom values ... 313s 60 settings made for type 313s Setting atom values ... 313s 60 settings made for type 313s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 313s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 313s Neighbor list info ... 313s update: every = 1 steps, delay = 5 steps, check = yes 313s max neighbors/atom: 2000, page size: 100000 313s master list distance cutoff = 1.42246 313s ghost atom cutoff = 1.42246 313s binsize = 0.71123, bins = 37 32 1 313s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 313s (1) pair lj/cut, perpetual 313s attributes: half, newton on 313s pair build: half/bin/atomonly/newton 313s stencil: half/bin/2d 313s bin: standard 313s Setting up Verlet run ... 313s Unit style : lj 313s Current step : 0 313s Time step : 0.003 313s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 313s Step Temp E_pair E_mol TotEng Press Volume 313s 0 1 0 0 0.71190476 0.52314537 571.54286 313s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 313s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 313s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 313s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 313s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 313s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 313s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 313s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 313s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 313s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 313s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 313s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 313s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 313s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 313s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 313s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 313s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 313s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 313s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 313s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 313s Loop time of 0.331461 on 1 procs for 10000 steps with 420 atoms 313s 313s Performance: 7819931.452 tau/day, 30169.489 timesteps/s, 12.671 Matom-step/s 313s 83.6% CPU use with 1 MPI tasks x 1 OpenMP threads 313s 313s MPI task timing breakdown: 313s Section | min time | avg time | max time |%varavg| %total 313s --------------------------------------------------------------- 313s Pair | 0.10289 | 0.10289 | 0.10289 | 0.0 | 31.04 313s Neigh | 0.043937 | 0.043937 | 0.043937 | 0.0 | 13.26 313s Comm | 0.029993 | 0.029993 | 0.029993 | 0.0 | 9.05 313s Output | 0.001087 | 0.001087 | 0.001087 | 0.0 | 0.33 313s Modify | 0.087916 | 0.087916 | 0.087916 | 0.0 | 26.52 313s Other | | 0.06564 | | | 19.80 313s 313s Nlocal: 420 ave 420 max 420 min 313s Histogram: 1 0 0 0 0 0 0 0 0 0 313s Nghost: 46 ave 46 max 46 min 313s Histogram: 1 0 0 0 0 0 0 0 0 0 313s Neighs: 952 ave 952 max 952 min 313s Histogram: 1 0 0 0 0 0 0 0 0 0 313s 313s Total # of neighbors = 952 313s Ave neighs/atom = 2.2666667 313s Neighbor list builds = 996 313s Dangerous builds = 0 313s Total wall time: 0:00:00 313s LAMMPS (7 Feb 2024 - Update 1) 313s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 313s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 313s using 1 OpenMP thread(s) per MPI task 313s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 313s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 313s 2 by 1 by 1 MPI processor grid 313s Created 420 atoms 313s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 313s create_atoms CPU = 0.000 seconds 313s 60 atoms in group lower 313s 60 atoms in group upper 313s 120 atoms in group boundary 313s 300 atoms in group flow 313s Setting atom values ... 313s 60 settings made for type 313s Setting atom values ... 313s 60 settings made for type 313s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 313s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 313s Neighbor list info ... 313s update: every = 1 steps, delay = 5 steps, check = yes 313s max neighbors/atom: 2000, page size: 100000 313s master list distance cutoff = 1.42246 313s ghost atom cutoff = 1.42246 313s binsize = 0.71123, bins = 37 32 1 313s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 313s (1) pair lj/cut, perpetual 313s attributes: half, newton on 313s pair build: half/bin/atomonly/newton 313s stencil: half/bin/2d 313s bin: standard 313s Setting up Verlet run ... 313s Unit style : lj 313s Current step : 0 313s Time step : 0.003 313s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 313s Step Temp E_pair E_mol TotEng Press Volume 313s 0 1 0 0 0.71190476 0.52314537 571.54286 313s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 313s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 313s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 313s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 313s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 313s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 313s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 313s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 313s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 313s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 313s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 313s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 313s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 313s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 313s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 314s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 314s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 314s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 314s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 314s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 314s Loop time of 0.441832 on 2 procs for 10000 steps with 420 atoms 314s 314s Performance: 5866483.713 tau/day, 22633.039 timesteps/s, 9.506 Matom-step/s 314s 87.5% CPU use with 2 MPI tasks x 1 OpenMP threads 314s 314s MPI task timing breakdown: 314s Section | min time | avg time | max time |%varavg| %total 314s --------------------------------------------------------------- 314s Pair | 0.057291 | 0.05779 | 0.05829 | 0.2 | 13.08 314s Neigh | 0.013778 | 0.014294 | 0.014811 | 0.4 | 3.24 314s Comm | 0.15288 | 0.1529 | 0.15292 | 0.0 | 34.61 314s Output | 0.00071989 | 0.0010387 | 0.0013575 | 1.0 | 0.24 314s Modify | 0.14376 | 0.14377 | 0.14378 | 0.0 | 32.54 314s Other | | 0.07205 | | | 16.31 314s 314s Nlocal: 210 ave 213 max 207 min 314s Histogram: 1 0 0 0 0 0 0 0 0 1 314s Nghost: 50 ave 51 max 49 min 314s Histogram: 1 0 0 0 0 0 0 0 0 1 314s Neighs: 558.5 ave 573 max 544 min 314s Histogram: 1 0 0 0 0 0 0 0 0 1 314s 314s Total # of neighbors = 1117 314s Ave neighs/atom = 2.6595238 314s Neighbor list builds = 562 314s Dangerous builds = 0 314s Total wall time: 0:00:00 314s LAMMPS (7 Feb 2024 - Update 1) 314s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 314s using 1 OpenMP thread(s) per MPI task 314s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 314s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 314s 1 by 1 by 1 MPI processor grid 314s Created 420 atoms 314s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 314s create_atoms CPU = 0.000 seconds 314s 60 atoms in group lower 314s 60 atoms in group upper 314s 120 atoms in group boundary 314s 300 atoms in group flow 314s Setting atom values ... 314s 60 settings made for type 314s Setting atom values ... 314s 60 settings made for type 314s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 314s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 314s Neighbor list info ... 314s update: every = 1 steps, delay = 5 steps, check = yes 314s max neighbors/atom: 2000, page size: 100000 314s master list distance cutoff = 1.42246 314s ghost atom cutoff = 1.42246 314s binsize = 0.71123, bins = 37 32 1 314s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 314s (1) pair lj/cut, perpetual 314s attributes: half, newton on 314s pair build: half/bin/atomonly/newton 314s stencil: half/bin/2d 314s bin: standard 314s Setting up Verlet run ... 314s Unit style : lj 314s Current step : 0 314s Time step : 0.003 314s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 314s Step Temp E_pair E_mol TotEng Press Volume 314s 0 1 0 0 0.71190476 0.52314537 571.54286 314s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 314s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 314s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 314s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 314s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 314s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 314s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 314s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 314s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 314s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 314s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 314s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 314s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 314s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 314s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 314s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 314s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 314s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 314s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 314s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 314s Loop time of 0.443008 on 1 procs for 10000 steps with 420 atoms 314s 314s Performance: 5850912.862 tau/day, 22572.966 timesteps/s, 9.481 Matom-step/s 314s 85.3% CPU use with 1 MPI tasks x 1 OpenMP threads 314s 314s MPI task timing breakdown: 314s Section | min time | avg time | max time |%varavg| %total 314s --------------------------------------------------------------- 314s Pair | 0.12575 | 0.12575 | 0.12575 | 0.0 | 28.39 314s Neigh | 0.026408 | 0.026408 | 0.026408 | 0.0 | 5.96 314s Comm | 0.038203 | 0.038203 | 0.038203 | 0.0 | 8.62 314s Output | 0.0012727 | 0.0012727 | 0.0012727 | 0.0 | 0.29 314s Modify | 0.18089 | 0.18089 | 0.18089 | 0.0 | 40.83 314s Other | | 0.07048 | | | 15.91 314s 314s Nlocal: 420 ave 420 max 420 min 314s Histogram: 1 0 0 0 0 0 0 0 0 0 314s Nghost: 48 ave 48 max 48 min 314s Histogram: 1 0 0 0 0 0 0 0 0 0 314s Neighs: 1124 ave 1124 max 1124 min 314s Histogram: 1 0 0 0 0 0 0 0 0 0 314s 314s Total # of neighbors = 1124 314s Ave neighs/atom = 2.6761905 314s Neighbor list builds = 561 314s Dangerous builds = 0 314s Total wall time: 0:00:00 314s run: OK 315s autopkgtest [00:45:54]: test flow: -----------------------] 319s flow PASS 319s autopkgtest [00:45:58]: test flow: - - - - - - - - - - results - - - - - - - - - - 322s autopkgtest [00:46:01]: test friction: preparing testbed 324s Reading package lists... 325s Building dependency tree... 325s Reading state information... 325s Starting pkgProblemResolver with broken count: 0 325s Starting 2 pkgProblemResolver with broken count: 0 325s Done 327s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 334s autopkgtest [00:46:13]: test friction: [----------------------- 336s LAMMPS (7 Feb 2024 - Update 1) 336s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 336s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 336s using 1 OpenMP thread(s) per MPI task 336s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 336s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 336s 2 by 1 by 1 MPI processor grid 336s Created 750 atoms 336s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 336s create_atoms CPU = 0.000 seconds 336s Created 750 atoms 336s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 336s create_atoms CPU = 0.000 seconds 336s Created 112 atoms 336s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 336s create_atoms CPU = 0.000 seconds 336s Created 112 atoms 336s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 336s create_atoms CPU = 0.000 seconds 336s 750 atoms in group lo 336s 862 atoms in group lo 336s 750 atoms in group hi 336s 862 atoms in group hi 336s 150 atoms in group lo-fixed 336s 150 atoms in group hi-fixed 336s 300 atoms in group boundary 336s 1424 atoms in group mobile 336s Setting atom values ... 336s 150 settings made for type 336s Setting atom values ... 336s 150 settings made for type 336s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 336s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 336s Neighbor list info ... 336s update: every = 1 steps, delay = 5 steps, check = yes 336s max neighbors/atom: 2000, page size: 100000 336s master list distance cutoff = 2.8 336s ghost atom cutoff = 2.8 336s binsize = 1.4, bins = 41 31 1 336s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 336s (1) pair lj/cut, perpetual 336s attributes: half, newton on 336s pair build: half/bin/atomonly/newton 336s stencil: half/bin/2d 336s bin: standard 336s Setting up Verlet run ... 336s Unit style : lj 336s Current step : 0 336s Time step : 0.0025 336s Per MPI rank memory allocation (min/avg/max) = 2.737 | 2.737 | 2.737 Mbytes 336s Step Temp E_pair E_mol TotEng Press Volume 336s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 336s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 336s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 336s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 336s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 337s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 337s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 337s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 337s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 337s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 337s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 338s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 338s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 338s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 338s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 338s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 338s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 338s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 339s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 339s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 339s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 339s Loop time of 3.02536 on 2 procs for 20000 steps with 1724 atoms 339s 339s Performance: 1427927.375 tau/day, 6610.775 timesteps/s, 11.397 Matom-step/s 339s 97.6% CPU use with 2 MPI tasks x 1 OpenMP threads 339s 339s MPI task timing breakdown: 339s Section | min time | avg time | max time |%varavg| %total 339s --------------------------------------------------------------- 339s Pair | 1.9301 | 2.0778 | 2.2255 | 10.2 | 68.68 339s Neigh | 0.10802 | 0.11907 | 0.13011 | 3.2 | 3.94 339s Comm | 0.25296 | 0.41466 | 0.57635 | 25.1 | 13.71 339s Output | 0.00055933 | 0.00086063 | 0.0011619 | 0.0 | 0.03 339s Modify | 0.23257 | 0.24699 | 0.2614 | 2.9 | 8.16 339s Other | | 0.166 | | | 5.49 339s 339s Nlocal: 862 ave 868 max 856 min 339s Histogram: 1 0 0 0 0 0 0 0 0 1 339s Nghost: 160.5 ave 161 max 160 min 339s Histogram: 1 0 0 0 0 0 0 0 0 1 339s Neighs: 7178.5 ave 7223 max 7134 min 339s Histogram: 1 0 0 0 0 0 0 0 0 1 339s 339s Total # of neighbors = 14357 339s Ave neighs/atom = 8.3277262 339s Neighbor list builds = 716 339s Dangerous builds = 0 339s Total wall time: 0:00:03 339s LAMMPS (7 Feb 2024 - Update 1) 339s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 339s using 1 OpenMP thread(s) per MPI task 339s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 339s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 339s 1 by 1 by 1 MPI processor grid 339s Created 750 atoms 339s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 339s create_atoms CPU = 0.001 seconds 339s Created 750 atoms 339s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 339s create_atoms CPU = 0.000 seconds 339s Created 112 atoms 339s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 339s create_atoms CPU = 0.000 seconds 339s Created 112 atoms 339s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 339s create_atoms CPU = 0.000 seconds 339s 750 atoms in group lo 339s 862 atoms in group lo 339s 750 atoms in group hi 339s 862 atoms in group hi 339s 150 atoms in group lo-fixed 339s 150 atoms in group hi-fixed 339s 300 atoms in group boundary 339s 1424 atoms in group mobile 339s Setting atom values ... 339s 150 settings made for type 339s Setting atom values ... 339s 150 settings made for type 339s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 339s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 339s Neighbor list info ... 339s update: every = 1 steps, delay = 5 steps, check = yes 339s max neighbors/atom: 2000, page size: 100000 339s master list distance cutoff = 2.8 339s ghost atom cutoff = 2.8 339s binsize = 1.4, bins = 41 31 1 339s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 339s (1) pair lj/cut, perpetual 339s attributes: half, newton on 339s pair build: half/bin/atomonly/newton 339s stencil: half/bin/2d 339s bin: standard 339s Setting up Verlet run ... 339s Unit style : lj 339s Current step : 0 339s Time step : 0.0025 339s Per MPI rank memory allocation (min/avg/max) = 2.746 | 2.746 | 2.746 Mbytes 339s Step Temp E_pair E_mol TotEng Press Volume 339s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 339s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 339s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 340s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 340s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 340s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 340s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 341s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 341s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 341s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 342s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 342s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 342s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 342s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 343s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 343s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 343s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 343s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 344s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 344s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 344s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 344s Loop time of 5.07531 on 1 procs for 20000 steps with 1724 atoms 344s 344s Performance: 851179.556 tau/day, 3940.646 timesteps/s, 6.794 Matom-step/s 344s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads 344s 344s MPI task timing breakdown: 344s Section | min time | avg time | max time |%varavg| %total 344s --------------------------------------------------------------- 344s Pair | 4.1263 | 4.1263 | 4.1263 | 0.0 | 81.30 344s Neigh | 0.21743 | 0.21743 | 0.21743 | 0.0 | 4.28 344s Comm | 0.069864 | 0.069864 | 0.069864 | 0.0 | 1.38 344s Output | 0.0019319 | 0.0019319 | 0.0019319 | 0.0 | 0.04 344s Modify | 0.4744 | 0.4744 | 0.4744 | 0.0 | 9.35 344s Other | | 0.1854 | | | 3.65 344s 344s Nlocal: 1724 ave 1724 max 1724 min 344s Histogram: 1 0 0 0 0 0 0 0 0 0 344s Nghost: 144 ave 144 max 144 min 344s Histogram: 1 0 0 0 0 0 0 0 0 0 344s Neighs: 14364 ave 14364 max 14364 min 344s Histogram: 1 0 0 0 0 0 0 0 0 0 344s 344s Total # of neighbors = 14364 344s Ave neighs/atom = 8.3317865 344s Neighbor list builds = 714 344s Dangerous builds = 0 344s Total wall time: 0:00:05 344s run: OK 344s autopkgtest [00:46:23]: test friction: -----------------------] 348s friction PASS 348s autopkgtest [00:46:27]: test friction: - - - - - - - - - - results - - - - - - - - - - 352s autopkgtest [00:46:31]: test hugo: preparing testbed 354s Reading package lists... 354s Building dependency tree... 354s Reading state information... 355s Starting pkgProblemResolver with broken count: 0 355s Starting 2 pkgProblemResolver with broken count: 0 355s Done 356s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 364s autopkgtest [00:46:43]: test hugo: [----------------------- 366s LAMMPS (7 Feb 2024 - Update 1) 366s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 366s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 366s using 1 OpenMP thread(s) per MPI task 366s Lattice spacing in x,y,z = 1.4142135 2 2 366s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 366s 1 by 1 by 2 MPI processor grid 366s Created 1000 atoms 366s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 366s create_atoms CPU = 0.001 seconds 366s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 366s Neighbor list info ... 366s update: every = 1 steps, delay = 0 steps, check = yes 366s max neighbors/atom: 2000, page size: 100000 366s master list distance cutoff = 1.8475372 366s ghost atom cutoff = 1.8475372 366s binsize = 0.92376862, bins = 8 11 11 366s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 366s (1) pair lj/cubic, perpetual 366s attributes: half, newton on 366s pair build: half/bin/atomonly/newton 366s stencil: half/bin/3d 366s bin: standard 366s Setting up cg style minimization ... 366s Unit style : lj 366s Current step : 0 366s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 366s (src/min.cpp:219) 366s Per MPI rank memory allocation (min/avg/max) = 3.924 | 3.924 | 3.924 Mbytes 366s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 366s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 366s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 366s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 366s Loop time of 0.0590445 on 2 procs for 134 steps with 1000 atoms 366s 366s 92.9% CPU use with 2 MPI tasks x 1 OpenMP threads 366s 366s Minimization stats: 366s Stopping criterion = force tolerance 366s Energy initial, next-to-last, final = 366s -6.29375358358574 -6.33442531515467 -6.33442531515467 366s Force two-norm initial, final = 3395.2895 5.5900884e-10 366s Force max component initial, final = 1960.2713 3.2516979e-10 366s Final line search alpha, max atom move = 1 3.2516979e-10 366s Iterations, force evaluations = 134 137 366s 366s MPI task timing breakdown: 366s Section | min time | avg time | max time |%varavg| %total 366s --------------------------------------------------------------- 366s Pair | 0.023193 | 0.026328 | 0.029462 | 1.9 | 44.59 366s Neigh | 0.00042884 | 0.00048473 | 0.00054061 | 0.0 | 0.82 366s Comm | 0.0094623 | 0.012704 | 0.015946 | 2.9 | 21.52 366s Output | 2.516e-05 | 3.734e-05 | 4.9521e-05 | 0.0 | 0.06 366s Modify | 0 | 0 | 0 | 0.0 | 0.00 366s Other | | 0.01949 | | | 33.01 366s 366s Nlocal: 500 ave 550 max 450 min 366s Histogram: 1 0 0 0 0 0 0 0 0 1 366s Nghost: 1214 ave 1264 max 1164 min 366s Histogram: 1 0 0 0 0 0 0 0 0 1 366s Neighs: 10500 ave 11550 max 9450 min 366s Histogram: 1 0 0 0 0 0 0 0 0 1 366s 366s Total # of neighbors = 21000 366s Ave neighs/atom = 21 366s Neighbor list builds = 1 366s Dangerous builds = 0 366s System init for write_restart ... 366s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 366s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 366s using 1 OpenMP thread(s) per MPI task 366s Reading restart file ... 366s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 366s restoring atom style atomic from restart 366s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 366s 1 by 1 by 2 MPI processor grid 366s restoring pair style lj/cubic from restart 366s 1000 atoms 366s read_restart CPU = 0.002 seconds 366s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 366s Neighbor list info ... 366s update: every = 1 steps, delay = 0 steps, check = yes 366s max neighbors/atom: 2000, page size: 100000 366s master list distance cutoff = 1.7475372 366s ghost atom cutoff = 1.7475372 366s binsize = 0.87376862, bins = 8 12 12 366s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 366s (1) pair lj/cubic, perpetual 366s attributes: half, newton on 366s pair build: half/bin/atomonly/newton 366s stencil: half/bin/3d 366s bin: standard 366s Setting up Verlet run ... 366s Unit style : lj 366s Current step : 0 366s Time step : 0.001 366s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 366s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 366s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 367s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 367s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 367s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 368s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 368s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 369s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 369s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 370s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 370s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 370s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 370s Loop time of 4.13889 on 2 procs for 10000 steps with 1000 atoms 370s 370s Performance: 208751.378 tau/day, 2416.104 timesteps/s, 2.416 Matom-step/s 370s 95.7% CPU use with 2 MPI tasks x 1 OpenMP threads 370s 370s MPI task timing breakdown: 370s Section | min time | avg time | max time |%varavg| %total 370s --------------------------------------------------------------- 370s Pair | 2.1913 | 2.2676 | 2.344 | 5.1 | 54.79 370s Neigh | 0.090947 | 0.09514 | 0.099332 | 1.4 | 2.30 370s Comm | 0.49603 | 0.57605 | 0.65607 | 10.5 | 13.92 370s Output | 0.001752 | 0.00177 | 0.0017879 | 0.0 | 0.04 370s Modify | 1.0267 | 1.0305 | 1.0343 | 0.4 | 24.90 370s Other | | 0.1678 | | | 4.05 370s 370s Nlocal: 500 ave 510 max 490 min 370s Histogram: 1 0 0 0 0 0 0 0 0 1 370s Nghost: 1351.5 ave 1357 max 1346 min 370s Histogram: 1 0 0 0 0 0 0 0 0 1 370s Neighs: 10160.5 ave 10780 max 9541 min 370s Histogram: 1 0 0 0 0 0 0 0 0 1 370s 370s Total # of neighbors = 20321 370s Ave neighs/atom = 20.321 370s Neighbor list builds = 194 370s Dangerous builds = 0 370s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 370s using 1 OpenMP thread(s) per MPI task 370s Reading restart file ... 370s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 370s restoring atom style atomic from restart 370s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 370s 1 by 1 by 2 MPI processor grid 370s restoring pair style lj/cubic from restart 370s 1000 atoms 370s read_restart CPU = 0.001 seconds 370s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 370s Neighbor list info ... 370s update: every = 1 steps, delay = 0 steps, check = yes 370s max neighbors/atom: 2000, page size: 100000 370s master list distance cutoff = 1.7475372 370s ghost atom cutoff = 1.7475372 370s binsize = 0.87376862, bins = 8 12 12 370s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 370s (1) pair lj/cubic, perpetual 370s attributes: half, newton on 370s pair build: half/bin/atomonly/newton 370s stencil: half/bin/3d 370s bin: standard 370s Setting up Verlet run ... 370s Unit style : lj 370s Current step : 0 370s Time step : 0.001 370s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 370s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 370s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 371s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 371s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 372s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 372s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 372s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 373s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 373s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 373s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 374s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 374s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 374s Loop time of 3.90383 on 2 procs for 10000 steps with 1000 atoms 374s 374s Performance: 221320.900 tau/day, 2561.584 timesteps/s, 2.562 Matom-step/s 374s 96.3% CPU use with 2 MPI tasks x 1 OpenMP threads 374s 374s MPI task timing breakdown: 374s Section | min time | avg time | max time |%varavg| %total 374s --------------------------------------------------------------- 374s Pair | 1.9804 | 1.9914 | 2.0024 | 0.8 | 51.01 374s Neigh | 0.0048405 | 0.0048879 | 0.0049353 | 0.1 | 0.13 374s Comm | 0.46009 | 0.47287 | 0.48564 | 1.9 | 12.11 374s Output | 0.0013429 | 0.0014174 | 0.001492 | 0.2 | 0.04 374s Modify | 1.2904 | 1.2934 | 1.2963 | 0.3 | 33.13 374s Other | | 0.1399 | | | 3.58 374s 374s Nlocal: 500 ave 503 max 497 min 374s Histogram: 1 0 0 0 0 0 0 0 0 1 374s Nghost: 1214 ave 1217 max 1211 min 374s Histogram: 1 0 0 0 0 0 0 0 0 1 374s Neighs: 10500 ave 10560 max 10440 min 374s Histogram: 1 0 0 0 0 0 0 0 0 1 374s 374s Total # of neighbors = 21000 374s Ave neighs/atom = 21 374s Neighbor list builds = 10 374s Dangerous builds = 0 374s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 374s using 1 OpenMP thread(s) per MPI task 374s Reading restart file ... 374s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 374s restoring atom style atomic from restart 374s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 374s 1 by 1 by 2 MPI processor grid 374s restoring pair style lj/cubic from restart 374s 1000 atoms 374s read_restart CPU = 0.001 seconds 374s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 374s Neighbor list info ... 374s update: every = 1 steps, delay = 0 steps, check = yes 374s max neighbors/atom: 2000, page size: 100000 374s master list distance cutoff = 1.7475372 374s ghost atom cutoff = 1.7475372 374s binsize = 0.87376862, bins = 8 12 12 374s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 374s (1) pair lj/cubic, perpetual 374s attributes: half, newton on 374s pair build: half/bin/atomonly/newton 374s stencil: half/bin/3d 374s bin: standard 374s Setting up Verlet run ... 374s Unit style : lj 374s Current step : 0 374s Time step : 0.001 374s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 374s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 374s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 375s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 375s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 375s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 376s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 376s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 376s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 377s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 377s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 377s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 378s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 378s Loop time of 3.47805 on 2 procs for 10000 steps with 1000 atoms 378s 378s Performance: 248414.785 tau/day, 2875.171 timesteps/s, 2.875 Matom-step/s 378s 97.0% CPU use with 2 MPI tasks x 1 OpenMP threads 378s 378s MPI task timing breakdown: 378s Section | min time | avg time | max time |%varavg| %total 378s --------------------------------------------------------------- 378s Pair | 2.0218 | 2.0228 | 2.0237 | 0.1 | 58.16 378s Neigh | 0.043261 | 0.043324 | 0.043388 | 0.0 | 1.25 378s Comm | 0.38884 | 0.39062 | 0.39239 | 0.3 | 11.23 378s Output | 0.0011995 | 0.0012936 | 0.0013877 | 0.3 | 0.04 378s Modify | 0.88443 | 0.88627 | 0.88811 | 0.2 | 25.48 378s Other | | 0.1338 | | | 3.85 378s 378s Nlocal: 500 ave 503 max 497 min 378s Histogram: 1 0 0 0 0 0 0 0 0 1 378s Nghost: 1217.5 ave 1219 max 1216 min 378s Histogram: 1 0 0 0 0 0 0 0 0 1 378s Neighs: 10291 ave 10353 max 10229 min 378s Histogram: 1 0 0 0 0 0 0 0 0 1 378s 378s Total # of neighbors = 20582 378s Ave neighs/atom = 20.582 378s Neighbor list builds = 89 378s Dangerous builds = 0 378s Total wall time: 0:00:11 378s LAMMPS (7 Feb 2024 - Update 1) 378s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 378s using 1 OpenMP thread(s) per MPI task 378s Lattice spacing in x,y,z = 1.4142135 2 2 378s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 378s 1 by 1 by 1 MPI processor grid 378s Created 1000 atoms 378s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 378s create_atoms CPU = 0.001 seconds 378s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 378s Neighbor list info ... 378s update: every = 1 steps, delay = 0 steps, check = yes 378s max neighbors/atom: 2000, page size: 100000 378s master list distance cutoff = 1.8475372 378s ghost atom cutoff = 1.8475372 378s binsize = 0.92376862, bins = 8 11 11 378s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 378s (1) pair lj/cubic, perpetual 378s attributes: half, newton on 378s pair build: half/bin/atomonly/newton 378s stencil: half/bin/3d 378s bin: standard 378s Setting up cg style minimization ... 378s Unit style : lj 378s Current step : 0 378s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 378s (src/min.cpp:219) 378s Per MPI rank memory allocation (min/avg/max) = 3.934 | 3.934 | 3.934 Mbytes 378s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 378s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 378s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 378s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 378s Loop time of 0.0685753 on 1 procs for 134 steps with 1000 atoms 378s 378s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 378s 378s Minimization stats: 378s Stopping criterion = force tolerance 378s Energy initial, next-to-last, final = 378s -6.29375358358557 -6.33442531515503 -6.33442531515503 378s Force two-norm initial, final = 3395.2895 5.5740327e-10 378s Force max component initial, final = 1960.2713 3.2730334e-10 378s Final line search alpha, max atom move = 1 3.2730334e-10 378s Iterations, force evaluations = 134 137 378s 378s MPI task timing breakdown: 378s Section | min time | avg time | max time |%varavg| %total 378s --------------------------------------------------------------- 378s Pair | 0.04862 | 0.04862 | 0.04862 | 0.0 | 70.90 378s Neigh | 0.00088021 | 0.00088021 | 0.00088021 | 0.0 | 1.28 378s Comm | 0.0027995 | 0.0027995 | 0.0027995 | 0.0 | 4.08 378s Output | 8.9201e-05 | 8.9201e-05 | 8.9201e-05 | 0.0 | 0.13 378s Modify | 0 | 0 | 0 | 0.0 | 0.00 378s Other | | 0.01619 | | | 23.60 378s 378s Nlocal: 1000 ave 1000 max 1000 min 378s Histogram: 1 0 0 0 0 0 0 0 0 0 378s Nghost: 1724 ave 1724 max 1724 min 378s Histogram: 1 0 0 0 0 0 0 0 0 0 378s Neighs: 21000 ave 21000 max 21000 min 378s Histogram: 1 0 0 0 0 0 0 0 0 0 378s 378s Total # of neighbors = 21000 378s Ave neighs/atom = 21 378s Neighbor list builds = 1 378s Dangerous builds = 0 378s System init for write_restart ... 378s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 378s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 378s using 1 OpenMP thread(s) per MPI task 378s Reading restart file ... 378s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 378s restoring atom style atomic from restart 378s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 378s 1 by 1 by 1 MPI processor grid 378s restoring pair style lj/cubic from restart 378s 1000 atoms 378s read_restart CPU = 0.001 seconds 378s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 378s Neighbor list info ... 378s update: every = 1 steps, delay = 0 steps, check = yes 378s max neighbors/atom: 2000, page size: 100000 378s master list distance cutoff = 1.7475372 378s ghost atom cutoff = 1.7475372 378s binsize = 0.87376862, bins = 8 12 12 378s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 378s (1) pair lj/cubic, perpetual 378s attributes: half, newton on 378s pair build: half/bin/atomonly/newton 378s stencil: half/bin/3d 378s bin: standard 378s Setting up Verlet run ... 378s Unit style : lj 378s Current step : 0 378s Time step : 0.001 378s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 378s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 378s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 378s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 379s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 380s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 380s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 381s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 382s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 382s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 383s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 383s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 384s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 384s Loop time of 6.00916 on 1 procs for 10000 steps with 1000 atoms 384s 384s Performance: 143780.454 tau/day, 1664.126 timesteps/s, 1.664 Matom-step/s 384s 97.2% CPU use with 1 MPI tasks x 1 OpenMP threads 384s 384s MPI task timing breakdown: 384s Section | min time | avg time | max time |%varavg| %total 384s --------------------------------------------------------------- 384s Pair | 4.5227 | 4.5227 | 4.5227 | 0.0 | 75.26 384s Neigh | 0.18083 | 0.18083 | 0.18083 | 0.0 | 3.01 384s Comm | 0.19125 | 0.19125 | 0.19125 | 0.0 | 3.18 384s Output | 0.0012651 | 0.0012651 | 0.0012651 | 0.0 | 0.02 384s Modify | 0.95234 | 0.95234 | 0.95234 | 0.0 | 15.85 384s Other | | 0.1607 | | | 2.68 384s 384s Nlocal: 1000 ave 1000 max 1000 min 384s Histogram: 1 0 0 0 0 0 0 0 0 0 384s Nghost: 1886 ave 1886 max 1886 min 384s Histogram: 1 0 0 0 0 0 0 0 0 0 384s Neighs: 20874 ave 20874 max 20874 min 384s Histogram: 1 0 0 0 0 0 0 0 0 0 384s 384s Total # of neighbors = 20874 384s Ave neighs/atom = 20.874 384s Neighbor list builds = 188 384s Dangerous builds = 0 384s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 384s using 1 OpenMP thread(s) per MPI task 384s Reading restart file ... 384s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 384s restoring atom style atomic from restart 384s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 384s 1 by 1 by 1 MPI processor grid 384s restoring pair style lj/cubic from restart 384s 1000 atoms 384s read_restart CPU = 0.001 seconds 384s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 384s Neighbor list info ... 384s update: every = 1 steps, delay = 0 steps, check = yes 384s max neighbors/atom: 2000, page size: 100000 384s master list distance cutoff = 1.7475372 384s ghost atom cutoff = 1.7475372 384s binsize = 0.87376862, bins = 8 12 12 384s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 384s (1) pair lj/cubic, perpetual 384s attributes: half, newton on 384s pair build: half/bin/atomonly/newton 384s stencil: half/bin/3d 384s bin: standard 384s Setting up Verlet run ... 384s Unit style : lj 384s Current step : 0 384s Time step : 0.001 384s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 384s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 384s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 384s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 385s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 386s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 386s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 387s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 387s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 388s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 388s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 389s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 389s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 389s Loop time of 5.47264 on 1 procs for 10000 steps with 1000 atoms 389s 389s Performance: 157876.176 tau/day, 1827.271 timesteps/s, 1.827 Matom-step/s 389s 96.5% CPU use with 1 MPI tasks x 1 OpenMP threads 389s 389s MPI task timing breakdown: 389s Section | min time | avg time | max time |%varavg| %total 389s --------------------------------------------------------------- 389s Pair | 4.0743 | 4.0743 | 4.0743 | 0.0 | 74.45 389s Neigh | 0.010475 | 0.010475 | 0.010475 | 0.0 | 0.19 389s Comm | 0.19693 | 0.19693 | 0.19693 | 0.0 | 3.60 389s Output | 0.0012892 | 0.0012892 | 0.0012892 | 0.0 | 0.02 389s Modify | 1.0217 | 1.0217 | 1.0217 | 0.0 | 18.67 389s Other | | 0.168 | | | 3.07 389s 389s Nlocal: 1000 ave 1000 max 1000 min 389s Histogram: 1 0 0 0 0 0 0 0 0 0 389s Nghost: 1724 ave 1724 max 1724 min 389s Histogram: 1 0 0 0 0 0 0 0 0 0 389s Neighs: 21000 ave 21000 max 21000 min 389s Histogram: 1 0 0 0 0 0 0 0 0 0 389s 389s Total # of neighbors = 21000 389s Ave neighs/atom = 21 389s Neighbor list builds = 11 389s Dangerous builds = 0 389s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 389s using 1 OpenMP thread(s) per MPI task 389s Reading restart file ... 389s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 389s restoring atom style atomic from restart 389s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 389s 1 by 1 by 1 MPI processor grid 389s restoring pair style lj/cubic from restart 389s 1000 atoms 389s read_restart CPU = 0.001 seconds 389s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 389s Neighbor list info ... 389s update: every = 1 steps, delay = 0 steps, check = yes 389s max neighbors/atom: 2000, page size: 100000 389s master list distance cutoff = 1.7475372 389s ghost atom cutoff = 1.7475372 389s binsize = 0.87376862, bins = 8 12 12 389s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 389s (1) pair lj/cubic, perpetual 389s attributes: half, newton on 389s pair build: half/bin/atomonly/newton 389s stencil: half/bin/3d 389s bin: standard 389s Setting up Verlet run ... 389s Unit style : lj 389s Current step : 0 389s Time step : 0.001 389s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 389s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 389s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 390s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 390s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 391s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 391s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 392s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 392s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 393s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 393s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 394s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 394s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 394s Loop time of 5.04486 on 1 procs for 10000 steps with 1000 atoms 394s 394s Performance: 171263.306 tau/day, 1982.214 timesteps/s, 1.982 Matom-step/s 394s 98.7% CPU use with 1 MPI tasks x 1 OpenMP threads 394s 394s MPI task timing breakdown: 394s Section | min time | avg time | max time |%varavg| %total 394s --------------------------------------------------------------- 394s Pair | 4.0344 | 4.0344 | 4.0344 | 0.0 | 79.97 394s Neigh | 0.089503 | 0.089503 | 0.089503 | 0.0 | 1.77 394s Comm | 0.1112 | 0.1112 | 0.1112 | 0.0 | 2.20 394s Output | 0.00092269 | 0.00092269 | 0.00092269 | 0.0 | 0.02 394s Modify | 0.71623 | 0.71623 | 0.71623 | 0.0 | 14.20 394s Other | | 0.09258 | | | 1.84 394s 394s Nlocal: 1000 ave 1000 max 1000 min 394s Histogram: 1 0 0 0 0 0 0 0 0 0 394s Nghost: 1724 ave 1724 max 1724 min 394s Histogram: 1 0 0 0 0 0 0 0 0 0 394s Neighs: 20654 ave 20654 max 20654 min 394s Histogram: 1 0 0 0 0 0 0 0 0 0 394s 394s Total # of neighbors = 20654 394s Ave neighs/atom = 20.654 394s Neighbor list builds = 94 394s Dangerous builds = 0 394s Total wall time: 0:00:16 394s run: OK 395s autopkgtest [00:47:14]: test hugo: -----------------------] 399s hugo PASS 399s autopkgtest [00:47:18]: test hugo: - - - - - - - - - - results - - - - - - - - - - 402s autopkgtest [00:47:21]: test command1: preparing testbed 425s autopkgtest [00:47:44]: testbed dpkg architecture: armhf 427s autopkgtest [00:47:46]: testbed apt version: 3.0.0 430s autopkgtest [00:47:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 432s autopkgtest [00:47:51]: testbed release detected to be: questing 440s autopkgtest [00:47:59]: updating testbed package index (apt update) 441s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 442s Get:2 http://ftpmaster.internal/ubuntu questing InRelease [110 kB] 442s Get:3 http://ftpmaster.internal/ubuntu questing-updates InRelease [110 kB] 442s Get:4 http://ftpmaster.internal/ubuntu questing-security InRelease [110 kB] 442s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1934 kB] 442s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [169 kB] 442s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.4 kB] 442s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main armhf Packages [204 kB] 442s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe armhf Packages [1371 kB] 442s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse armhf Packages [12.5 kB] 442s Get:11 http://ftpmaster.internal/ubuntu questing/universe Sources [21.1 MB] 443s Get:12 http://ftpmaster.internal/ubuntu questing/main Sources [1390 kB] 443s Get:13 http://ftpmaster.internal/ubuntu questing/multiverse Sources [299 kB] 443s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf Packages [1358 kB] 443s Get:15 http://ftpmaster.internal/ubuntu questing/universe armhf Packages [15.2 MB] 443s Get:16 http://ftpmaster.internal/ubuntu questing/multiverse armhf Packages [173 kB] 447s Fetched 43.7 MB in 5s (8360 kB/s) 448s Reading package lists... 453s autopkgtest [00:48:12]: upgrading testbed (apt dist-upgrade and autopurge) 455s Reading package lists... 455s Building dependency tree... 455s Reading state information... 456s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 456s Starting 2 pkgProblemResolver with broken count: 0 456s Done 458s Entering ResolveByKeep 458s 458s Calculating upgrade... 459s The following packages will be upgraded: 459s base-files distro-info-data dpkg dpkg-dev ed fwupd htop libdpkg-perl 459s libftdi1-2 libfwupd3 libnpth0t64 libnvme1t64 libpython3.13-minimal 459s libpython3.13-stdlib libsensors-config libsensors5 liburcu8t64 459s motd-news-config nano python3.13 python3.13-gdbm python3.13-minimal 459s ubuntu-pro-client ubuntu-pro-client-l10n usb.ids 459s 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 459s Need to get 11.0 MB of archives. 459s After this operation, 3722 kB disk space will be freed. 459s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf motd-news-config all 13.7ubuntu1 [5260 B] 459s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf base-files armhf 13.7ubuntu1 [75.4 kB] 460s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf dpkg armhf 1.22.18ubuntu3 [1254 kB] 460s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main armhf python3.13 armhf 3.13.3-2 [739 kB] 460s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main armhf libpython3.13-stdlib armhf 3.13.3-2 [1945 kB] 460s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main armhf python3.13-minimal armhf 3.13.3-2 [2017 kB] 460s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main armhf libpython3.13-minimal armhf 3.13.3-2 [871 kB] 460s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf libnpth0t64 armhf 1.8-3 [7716 B] 460s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf distro-info-data all 0.64 [6664 B] 460s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client-l10n armhf 35.1ubuntu0 [19.7 kB] 460s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf ubuntu-pro-client armhf 35.1ubuntu0 [258 kB] 460s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf ed armhf 1.21.1-1 [53.0 kB] 460s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf libsensors-config all 1:3.6.2-2 [6756 B] 460s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf libsensors5 armhf 1:3.6.2-2 [26.8 kB] 460s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf liburcu8t64 armhf 0.15.2-2 [57.3 kB] 460s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf nano armhf 8.4-1 [278 kB] 460s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf usb.ids all 2025.04.01-1 [223 kB] 460s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf dpkg-dev all 1.22.18ubuntu3 [1089 kB] 460s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf libdpkg-perl all 1.22.18ubuntu3 [281 kB] 460s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf fwupd armhf 2.0.8-3 [1414 kB] 460s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf libfwupd3 armhf 2.0.8-3 [126 kB] 460s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf htop armhf 3.4.1-4 [147 kB] 460s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libftdi1-2 armhf 1.5-10 [27.8 kB] 460s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf libnvme1t64 armhf 1.13-2 [74.3 kB] 460s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main armhf python3.13-gdbm armhf 3.13.3-2 [30.4 kB] 461s Fetched 11.0 MB in 1s (9476 kB/s) 461s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 461s Preparing to unpack .../motd-news-config_13.7ubuntu1_all.deb ... 461s Unpacking motd-news-config (13.7ubuntu1) over (13.6ubuntu2) ... 461s Preparing to unpack .../base-files_13.7ubuntu1_armhf.deb ... 462s Unpacking base-files (13.7ubuntu1) over (13.6ubuntu2) ... 462s Setting up base-files (13.7ubuntu1) ... 462s Installing new version of config file /etc/issue ... 462s Installing new version of config file /etc/issue.net ... 462s Installing new version of config file /etc/lsb-release ... 463s motd-news.service is a disabled or a static unit not running, not starting it. 463s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 463s Preparing to unpack .../dpkg_1.22.18ubuntu3_armhf.deb ... 463s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 463s Setting up dpkg (1.22.18ubuntu3) ... 464s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 464s Preparing to unpack .../python3.13_3.13.3-2_armhf.deb ... 464s Unpacking python3.13 (3.13.3-2) over (3.13.3-1) ... 464s Preparing to unpack .../libpython3.13-stdlib_3.13.3-2_armhf.deb ... 464s Unpacking libpython3.13-stdlib:armhf (3.13.3-2) over (3.13.3-1) ... 464s Preparing to unpack .../python3.13-minimal_3.13.3-2_armhf.deb ... 464s Unpacking python3.13-minimal (3.13.3-2) over (3.13.3-1) ... 465s Preparing to unpack .../libpython3.13-minimal_3.13.3-2_armhf.deb ... 465s Unpacking libpython3.13-minimal:armhf (3.13.3-2) over (3.13.3-1) ... 465s Preparing to unpack .../libnpth0t64_1.8-3_armhf.deb ... 465s Unpacking libnpth0t64:armhf (1.8-3) over (1.8-2) ... 465s Setting up libnpth0t64:armhf (1.8-3) ... 465s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63953 files and directories currently installed.) 465s Preparing to unpack .../00-distro-info-data_0.64_all.deb ... 465s Unpacking distro-info-data (0.64) over (0.63) ... 465s Preparing to unpack .../01-ubuntu-pro-client-l10n_35.1ubuntu0_armhf.deb ... 465s Unpacking ubuntu-pro-client-l10n (35.1ubuntu0) over (35) ... 465s Preparing to unpack .../02-ubuntu-pro-client_35.1ubuntu0_armhf.deb ... 466s Unpacking ubuntu-pro-client (35.1ubuntu0) over (35) ... 466s Preparing to unpack .../03-ed_1.21.1-1_armhf.deb ... 466s Unpacking ed (1.21.1-1) over (1.21-1) ... 466s Preparing to unpack .../04-libsensors-config_1%3a3.6.2-2_all.deb ... 466s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 466s Preparing to unpack .../05-libsensors5_1%3a3.6.2-2_armhf.deb ... 466s Unpacking libsensors5:armhf (1:3.6.2-2) over (1:3.6.0-10) ... 466s Preparing to unpack .../06-liburcu8t64_0.15.2-2_armhf.deb ... 466s Unpacking liburcu8t64:armhf (0.15.2-2) over (0.15.1-1) ... 466s Preparing to unpack .../07-nano_8.4-1_armhf.deb ... 466s Unpacking nano (8.4-1) over (8.3-1) ... 466s Preparing to unpack .../08-usb.ids_2025.04.01-1_all.deb ... 466s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 466s Preparing to unpack .../09-dpkg-dev_1.22.18ubuntu3_all.deb ... 466s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 466s Preparing to unpack .../10-libdpkg-perl_1.22.18ubuntu3_all.deb ... 466s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 466s Preparing to unpack .../11-fwupd_2.0.8-3_armhf.deb ... 467s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 467s dpkg: warning: unable to delete old directory '/etc/grub.d': Directory not empty 467s Preparing to unpack .../12-libfwupd3_2.0.8-3_armhf.deb ... 467s Unpacking libfwupd3:armhf (2.0.8-3) over (2.0.7-1) ... 467s Preparing to unpack .../13-htop_3.4.1-4_armhf.deb ... 467s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 467s Preparing to unpack .../14-libftdi1-2_1.5-10_armhf.deb ... 467s Unpacking libftdi1-2:armhf (1.5-10) over (1.5-8build1) ... 467s Preparing to unpack .../15-libnvme1t64_1.13-2_armhf.deb ... 467s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 467s Preparing to unpack .../16-python3.13-gdbm_3.13.3-2_armhf.deb ... 467s Unpacking python3.13-gdbm (3.13.3-2) over (3.13.3-1) ... 467s Setting up motd-news-config (13.7ubuntu1) ... 467s Setting up liburcu8t64:armhf (0.15.2-2) ... 467s Setting up distro-info-data (0.64) ... 467s Setting up htop (3.4.1-4) ... 467s Setting up libsensors-config (1:3.6.2-2) ... 467s Installing new version of config file /etc/sensors3.conf ... 467s Setting up libfwupd3:armhf (2.0.8-3) ... 467s Setting up libpython3.13-minimal:armhf (3.13.3-2) ... 467s Setting up libftdi1-2:armhf (1.5-10) ... 467s Setting up libnvme1t64 (1.13-2) ... 467s Setting up ed (1.21.1-1) ... 467s Setting up usb.ids (2025.04.01-1) ... 467s Setting up libsensors5:armhf (1:3.6.2-2) ... 467s Setting up libdpkg-perl (1.22.18ubuntu3) ... 467s Setting up nano (8.4-1) ... 467s Installing new version of config file /etc/nanorc ... 467s Setting up python3.13-minimal (3.13.3-2) ... 468s Setting up libpython3.13-stdlib:armhf (3.13.3-2) ... 468s Setting up ubuntu-pro-client (35.1ubuntu0) ... 469s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 469s 469s apparmor_parser: Unable to replace "apt_methods". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 469s 469s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 469s 471s Setting up fwupd (2.0.8-3) ... 472s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 472s fwupd.service is a disabled or a static unit not running, not starting it. 473s Setting up python3.13-gdbm (3.13.3-2) ... 473s Setting up ubuntu-pro-client-l10n (35.1ubuntu0) ... 473s Setting up python3.13 (3.13.3-2) ... 474s Setting up dpkg-dev (1.22.18ubuntu3) ... 474s Processing triggers for dbus (1.16.2-2ubuntu1) ... 474s Processing triggers for install-info (7.1.1-1) ... 474s Processing triggers for libc-bin (2.41-6ubuntu1) ... 474s Processing triggers for systemd (257.4-1ubuntu3) ... 474s Processing triggers for man-db (2.13.0-1) ... 476s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu7) ... 476s Processing triggers for initramfs-tools (0.147ubuntu1) ... 478s Reading package lists... 479s Building dependency tree... 479s Reading state information... 479s Starting pkgProblemResolver with broken count: 0 479s Starting 2 pkgProblemResolver with broken count: 0 479s Done 480s Solving dependencies... 481s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 482s autopkgtest [00:48:41]: rebooting testbed after setup commands that affected boot 547s Reading package lists... 548s Building dependency tree... 548s Reading state information... 548s Starting pkgProblemResolver with broken count: 0 549s Starting 2 pkgProblemResolver with broken count: 0 549s Done 550s The following NEW packages will be installed: 550s autoconf automake autotools-dev cpp cpp-14 cpp-14-arm-linux-gnueabihf 550s cpp-arm-linux-gnueabihf fontconfig-config fonts-dejavu-core 550s fonts-dejavu-mono g++ g++-14 g++-14-arm-linux-gnueabihf 550s g++-arm-linux-gnueabihf gcc gcc-14 gcc-14-arm-linux-gnueabihf 550s gcc-arm-linux-gnueabihf gfortran-14 gfortran-14-arm-linux-gnueabihf 550s hwloc-nox libaec0 libasan8 libblas3 libc-dev-bin libc6-dev libcairo2 550s libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 libfftw3-double3 550s libfontconfig1 libfreetype6 libgbm1 libgcc-14-dev libgfortran-14-dev 550s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 550s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhwloc-dev 550s libhwloc15 libisl23 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26 550s libkim-api2 liblammps-dev liblammps0t64 liblapack3 liblerc4 libllvm19 550s libltdl-dev libltdl7 libmpc3 libmpich-dev libmpich12 libnetcdf22 libnuma-dev 550s libogg0 libopengl0 libpixman-1-0 libproj25 libpython3.13 libsharpyuv0 550s libslurm42t64 libstdc++-14-dev libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 550s libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libubsan1 libvoro++1 550s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 550s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 550s libxcb-sync1 libxcb-xfixes0 libxft2 libxrender1 libxshmfence1 libxss1 550s libxxf86vm1 linux-libc-dev m4 mesa-libgallium mpi-default-bin 550s mpi-default-dev mpich proj-data python3-lammps rpcsvc-proto x11-common 550s 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. 550s Need to get 155 MB of archives. 550s After this operation, 521 MB of additional disk space will be used. 550s Get:1 http://ftpmaster.internal/ubuntu questing/main armhf m4 armhf 1.4.19-7 [238 kB] 551s Get:2 http://ftpmaster.internal/ubuntu questing/main armhf autoconf all 2.72-3ubuntu1 [383 kB] 551s Get:3 http://ftpmaster.internal/ubuntu questing/main armhf autotools-dev all 20220109.1 [44.9 kB] 551s Get:4 http://ftpmaster.internal/ubuntu questing/main armhf automake all 1:1.17-3ubuntu1 [572 kB] 551s Get:5 http://ftpmaster.internal/ubuntu questing/main armhf libisl23 armhf 0.27-1 [546 kB] 551s Get:6 http://ftpmaster.internal/ubuntu questing/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 551s Get:7 http://ftpmaster.internal/ubuntu questing/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [9221 kB] 551s Get:8 http://ftpmaster.internal/ubuntu questing/main armhf cpp-14 armhf 14.2.0-19ubuntu2 [1032 B] 551s Get:9 http://ftpmaster.internal/ubuntu questing/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [5578 B] 551s Get:10 http://ftpmaster.internal/ubuntu questing/main armhf cpp armhf 4:14.2.0-1ubuntu1 [22.4 kB] 551s Get:11 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 551s Get:12 http://ftpmaster.internal/ubuntu questing/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 551s Get:13 http://ftpmaster.internal/ubuntu questing/main armhf fontconfig-config armhf 2.15.0-2.2ubuntu1 [37.9 kB] 551s Get:14 http://ftpmaster.internal/ubuntu questing/main armhf libcc1-0 armhf 15-20250404-0ubuntu1 [43.3 kB] 551s Get:15 http://ftpmaster.internal/ubuntu questing/main armhf libgomp1 armhf 15-20250404-0ubuntu1 [128 kB] 551s Get:16 http://ftpmaster.internal/ubuntu questing/main armhf libasan8 armhf 15-20250404-0ubuntu1 [2951 kB] 551s Get:17 http://ftpmaster.internal/ubuntu questing/main armhf libubsan1 armhf 15-20250404-0ubuntu1 [1188 kB] 551s Get:18 http://ftpmaster.internal/ubuntu questing/main armhf libgcc-14-dev armhf 14.2.0-19ubuntu2 [897 kB] 551s Get:19 http://ftpmaster.internal/ubuntu questing/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [18.0 MB] 552s Get:20 http://ftpmaster.internal/ubuntu questing/main armhf gcc-14 armhf 14.2.0-19ubuntu2 [510 kB] 552s Get:21 http://ftpmaster.internal/ubuntu questing/main armhf gcc-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1218 B] 552s Get:22 http://ftpmaster.internal/ubuntu questing/main armhf gcc armhf 4:14.2.0-1ubuntu1 [5004 B] 552s Get:23 http://ftpmaster.internal/ubuntu questing/main armhf libc-dev-bin armhf 2.41-6ubuntu1 [21.7 kB] 552s Get:24 http://ftpmaster.internal/ubuntu questing/main armhf linux-libc-dev armhf 6.14.0-15.15 [1687 kB] 552s Get:25 http://ftpmaster.internal/ubuntu questing/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 552s Get:26 http://ftpmaster.internal/ubuntu questing/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 552s Get:27 http://ftpmaster.internal/ubuntu questing/main armhf libc6-dev armhf 2.41-6ubuntu1 [1396 kB] 552s Get:28 http://ftpmaster.internal/ubuntu questing/main armhf libstdc++-14-dev armhf 14.2.0-19ubuntu2 [2576 kB] 552s Get:29 http://ftpmaster.internal/ubuntu questing/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [10.5 MB] 552s Get:30 http://ftpmaster.internal/ubuntu questing/main armhf g++-14 armhf 14.2.0-19ubuntu2 [23.0 kB] 552s Get:31 http://ftpmaster.internal/ubuntu questing/main armhf g++-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [966 B] 552s Get:32 http://ftpmaster.internal/ubuntu questing/main armhf g++ armhf 4:14.2.0-1ubuntu1 [1084 B] 552s Get:33 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran5 armhf 15-20250404-0ubuntu1 [331 kB] 552s Get:34 http://ftpmaster.internal/ubuntu questing/main armhf libgfortran-14-dev armhf 14.2.0-19ubuntu2 [370 kB] 552s Get:35 http://ftpmaster.internal/ubuntu questing/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-19ubuntu2 [9763 kB] 552s Get:36 http://ftpmaster.internal/ubuntu questing/main armhf gfortran-14 armhf 14.2.0-19ubuntu2 [14.2 kB] 552s Get:37 http://ftpmaster.internal/ubuntu questing/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 552s Get:38 http://ftpmaster.internal/ubuntu questing/main armhf libblas3 armhf 3.12.1-2 [132 kB] 552s Get:39 http://ftpmaster.internal/ubuntu questing/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 552s Get:40 http://ftpmaster.internal/ubuntu questing/main armhf libfontconfig1 armhf 2.15.0-2.2ubuntu1 [114 kB] 552s Get:41 http://ftpmaster.internal/ubuntu questing/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 552s Get:42 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 552s Get:43 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 552s Get:44 http://ftpmaster.internal/ubuntu questing/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 552s Get:45 http://ftpmaster.internal/ubuntu questing/main armhf libcairo2 armhf 1.18.4-1 [483 kB] 552s Get:46 http://ftpmaster.internal/ubuntu questing/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 552s Get:47 http://ftpmaster.internal/ubuntu questing/universe armhf libdouble-conversion3 armhf 3.3.1-1 [39.1 kB] 552s Get:48 http://ftpmaster.internal/ubuntu questing/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build1 [369 kB] 553s Get:49 http://ftpmaster.internal/ubuntu questing/main armhf libwayland-server0 armhf 1.23.1-3 [30.3 kB] 553s Get:50 http://ftpmaster.internal/ubuntu questing/main armhf libllvm19 armhf 1:19.1.7-3ubuntu1 [27.8 MB] 553s Get:51 http://ftpmaster.internal/ubuntu questing/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 553s Get:52 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 553s Get:53 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 553s Get:54 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 553s Get:55 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 553s Get:56 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 553s Get:57 http://ftpmaster.internal/ubuntu questing/main armhf libxshmfence1 armhf 1.3.3-1 [4948 B] 553s Get:58 http://ftpmaster.internal/ubuntu questing/main armhf mesa-libgallium armhf 25.0.3-1ubuntu2 [8260 kB] 553s Get:59 http://ftpmaster.internal/ubuntu questing/main armhf libgbm1 armhf 25.0.3-1ubuntu2 [29.0 kB] 553s Get:60 http://ftpmaster.internal/ubuntu questing/main armhf libvulkan1 armhf 1.4.304.0-1 [127 kB] 553s Get:61 http://ftpmaster.internal/ubuntu questing/main armhf libgl1-mesa-dri armhf 25.0.3-1ubuntu2 [32.0 kB] 553s Get:62 http://ftpmaster.internal/ubuntu questing/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 553s Get:63 http://ftpmaster.internal/ubuntu questing/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 553s Get:64 http://ftpmaster.internal/ubuntu questing/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 553s Get:65 http://ftpmaster.internal/ubuntu questing/main armhf libglx-mesa0 armhf 25.0.3-1ubuntu2 [120 kB] 553s Get:66 http://ftpmaster.internal/ubuntu questing/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 553s Get:67 http://ftpmaster.internal/ubuntu questing/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 553s Get:68 http://ftpmaster.internal/ubuntu questing/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB] 553s Get:69 http://ftpmaster.internal/ubuntu questing/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 553s Get:70 http://ftpmaster.internal/ubuntu questing/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 553s Get:71 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 553s Get:72 http://ftpmaster.internal/ubuntu questing/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB] 554s Get:73 http://ftpmaster.internal/ubuntu questing/universe armhf libhwloc15 armhf 2.12.0-1 [147 kB] 554s Get:74 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 554s Get:75 http://ftpmaster.internal/ubuntu questing/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 554s Get:76 http://ftpmaster.internal/ubuntu questing/main armhf libjsoncpp26 armhf 1.9.6-3 [75.5 kB] 554s Get:77 http://ftpmaster.internal/ubuntu questing/universe armhf libkim-api2 armhf 2.3.0-1ubuntu1 [566 kB] 554s Get:78 http://ftpmaster.internal/ubuntu questing/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 554s Get:79 http://ftpmaster.internal/ubuntu questing/universe armhf libmpich12 armhf 4.2.1-5 [1574 kB] 554s Get:80 http://ftpmaster.internal/ubuntu questing/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB] 554s Get:81 http://ftpmaster.internal/ubuntu questing-proposed/main armhf libpython3.13 armhf 3.13.3-2 [2082 kB] 554s Get:82 http://ftpmaster.internal/ubuntu questing/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 554s Get:83 http://ftpmaster.internal/ubuntu questing/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB] 554s Get:84 http://ftpmaster.internal/ubuntu questing/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 554s Get:85 http://ftpmaster.internal/ubuntu questing/universe armhf proj-data all 9.5.1-1 [7924 kB] 554s Get:86 http://ftpmaster.internal/ubuntu questing/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 554s Get:87 http://ftpmaster.internal/ubuntu questing/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 554s Get:88 http://ftpmaster.internal/ubuntu questing/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 554s Get:89 http://ftpmaster.internal/ubuntu questing/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 554s Get:90 http://ftpmaster.internal/ubuntu questing/main armhf libtiff6 armhf 4.7.0-3ubuntu1 [184 kB] 554s Get:91 http://ftpmaster.internal/ubuntu questing/universe armhf libproj25 armhf 9.5.1-1 [1331 kB] 554s Get:92 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbbind-2-5 armhf 2022.0.0-2 [13.8 kB] 554s Get:93 http://ftpmaster.internal/ubuntu questing/universe armhf libtbbmalloc2 armhf 2022.0.0-2 [47.0 kB] 554s Get:94 http://ftpmaster.internal/ubuntu questing/universe armhf libtbb12 armhf 2022.0.0-2 [80.8 kB] 554s Get:95 http://ftpmaster.internal/ubuntu questing/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 554s Get:96 http://ftpmaster.internal/ubuntu questing/main armhf libtheoradec1 armhf 1.2.0~alpha1+dfsg-6 [45.8 kB] 554s Get:97 http://ftpmaster.internal/ubuntu questing/main armhf libtheoraenc1 armhf 1.2.0~alpha1+dfsg-6 [91.8 kB] 554s Get:98 http://ftpmaster.internal/ubuntu questing/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 554s Get:99 http://ftpmaster.internal/ubuntu questing/main armhf x11-common all 1:7.7+23ubuntu4 [21.8 kB] 554s Get:100 http://ftpmaster.internal/ubuntu questing/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 554s Get:101 http://ftpmaster.internal/ubuntu questing/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 554s Get:102 http://ftpmaster.internal/ubuntu questing/universe armhf libvtk9.3 armhf 9.3.0+dfsg1-4ubuntu1 [21.9 MB] 555s Get:103 http://ftpmaster.internal/ubuntu questing/universe armhf liblammps0t64 armhf 20240207+dfsg-3build3 [6801 kB] 556s Get:104 http://ftpmaster.internal/ubuntu questing/main armhf libnuma-dev armhf 2.0.18-1build1 [35.0 kB] 556s Get:105 http://ftpmaster.internal/ubuntu questing/main armhf libltdl7 armhf 2.5.4-4 [39.8 kB] 556s Get:106 http://ftpmaster.internal/ubuntu questing/main armhf libltdl-dev armhf 2.5.4-4 [169 kB] 556s Get:107 http://ftpmaster.internal/ubuntu questing/universe armhf libhwloc-dev armhf 2.12.0-1 [247 kB] 556s Get:108 http://ftpmaster.internal/ubuntu questing/universe armhf hwloc-nox armhf 2.12.0-1 [213 kB] 556s Get:109 http://ftpmaster.internal/ubuntu questing/universe armhf libslurm42t64 armhf 24.11.3-2 [769 kB] 556s Get:110 http://ftpmaster.internal/ubuntu questing/universe armhf mpich armhf 4.2.1-5 [214 kB] 556s Get:111 http://ftpmaster.internal/ubuntu questing/universe armhf libmpich-dev armhf 4.2.1-5 [2459 kB] 556s Get:112 http://ftpmaster.internal/ubuntu questing/universe armhf mpi-default-dev armhf 1.18 [3322 B] 556s Get:113 http://ftpmaster.internal/ubuntu questing/universe armhf liblammps-dev armhf 20240207+dfsg-3build3 [112 kB] 556s Get:114 http://ftpmaster.internal/ubuntu questing/universe armhf mpi-default-bin armhf 1.18 [2504 B] 556s Get:115 http://ftpmaster.internal/ubuntu questing/universe armhf python3-lammps armhf 20240207+dfsg-3build3 [70.5 kB] 557s Fetched 155 MB in 6s (27.6 MB/s) 557s Selecting previously unselected package m4. 557s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 63951 files and directories currently installed.) 557s Preparing to unpack .../000-m4_1.4.19-7_armhf.deb ... 557s Unpacking m4 (1.4.19-7) ... 557s Selecting previously unselected package autoconf. 557s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 557s Unpacking autoconf (2.72-3ubuntu1) ... 557s Selecting previously unselected package autotools-dev. 557s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 557s Unpacking autotools-dev (20220109.1) ... 557s Selecting previously unselected package automake. 557s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 557s Unpacking automake (1:1.17-3ubuntu1) ... 557s Selecting previously unselected package libisl23:armhf. 557s Preparing to unpack .../004-libisl23_0.27-1_armhf.deb ... 557s Unpacking libisl23:armhf (0.27-1) ... 557s Selecting previously unselected package libmpc3:armhf. 557s Preparing to unpack .../005-libmpc3_1.3.1-1build2_armhf.deb ... 557s Unpacking libmpc3:armhf (1.3.1-1build2) ... 557s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 557s Preparing to unpack .../006-cpp-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 557s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 558s Selecting previously unselected package cpp-14. 558s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_armhf.deb ... 558s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 558s Selecting previously unselected package cpp-arm-linux-gnueabihf. 558s Preparing to unpack .../008-cpp-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 558s Unpacking cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 558s Selecting previously unselected package cpp. 558s Preparing to unpack .../009-cpp_4%3a14.2.0-1ubuntu1_armhf.deb ... 558s Unpacking cpp (4:14.2.0-1ubuntu1) ... 558s Selecting previously unselected package fonts-dejavu-mono. 558s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 558s Unpacking fonts-dejavu-mono (2.37-8) ... 558s Selecting previously unselected package fonts-dejavu-core. 558s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 558s Unpacking fonts-dejavu-core (2.37-8) ... 558s Selecting previously unselected package fontconfig-config. 558s Preparing to unpack .../012-fontconfig-config_2.15.0-2.2ubuntu1_armhf.deb ... 559s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 559s Selecting previously unselected package libcc1-0:armhf. 559s Preparing to unpack .../013-libcc1-0_15-20250404-0ubuntu1_armhf.deb ... 559s Unpacking libcc1-0:armhf (15-20250404-0ubuntu1) ... 559s Selecting previously unselected package libgomp1:armhf. 559s Preparing to unpack .../014-libgomp1_15-20250404-0ubuntu1_armhf.deb ... 559s Unpacking libgomp1:armhf (15-20250404-0ubuntu1) ... 559s Selecting previously unselected package libasan8:armhf. 559s Preparing to unpack .../015-libasan8_15-20250404-0ubuntu1_armhf.deb ... 559s Unpacking libasan8:armhf (15-20250404-0ubuntu1) ... 559s Selecting previously unselected package libubsan1:armhf. 559s Preparing to unpack .../016-libubsan1_15-20250404-0ubuntu1_armhf.deb ... 559s Unpacking libubsan1:armhf (15-20250404-0ubuntu1) ... 559s Selecting previously unselected package libgcc-14-dev:armhf. 559s Preparing to unpack .../017-libgcc-14-dev_14.2.0-19ubuntu2_armhf.deb ... 559s Unpacking libgcc-14-dev:armhf (14.2.0-19ubuntu2) ... 559s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 559s Preparing to unpack .../018-gcc-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 559s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 560s Selecting previously unselected package gcc-14. 560s Preparing to unpack .../019-gcc-14_14.2.0-19ubuntu2_armhf.deb ... 560s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 560s Selecting previously unselected package gcc-arm-linux-gnueabihf. 560s Preparing to unpack .../020-gcc-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 560s Unpacking gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 560s Selecting previously unselected package gcc. 560s Preparing to unpack .../021-gcc_4%3a14.2.0-1ubuntu1_armhf.deb ... 560s Unpacking gcc (4:14.2.0-1ubuntu1) ... 560s Selecting previously unselected package libc-dev-bin. 560s Preparing to unpack .../022-libc-dev-bin_2.41-6ubuntu1_armhf.deb ... 560s Unpacking libc-dev-bin (2.41-6ubuntu1) ... 560s Selecting previously unselected package linux-libc-dev:armhf. 560s Preparing to unpack .../023-linux-libc-dev_6.14.0-15.15_armhf.deb ... 560s Unpacking linux-libc-dev:armhf (6.14.0-15.15) ... 560s Selecting previously unselected package libcrypt-dev:armhf. 560s Preparing to unpack .../024-libcrypt-dev_1%3a4.4.38-1_armhf.deb ... 560s Unpacking libcrypt-dev:armhf (1:4.4.38-1) ... 560s Selecting previously unselected package rpcsvc-proto. 560s Preparing to unpack .../025-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 560s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 560s Selecting previously unselected package libc6-dev:armhf. 561s Preparing to unpack .../026-libc6-dev_2.41-6ubuntu1_armhf.deb ... 561s Unpacking libc6-dev:armhf (2.41-6ubuntu1) ... 561s Selecting previously unselected package libstdc++-14-dev:armhf. 561s Preparing to unpack .../027-libstdc++-14-dev_14.2.0-19ubuntu2_armhf.deb ... 561s Unpacking libstdc++-14-dev:armhf (14.2.0-19ubuntu2) ... 561s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 561s Preparing to unpack .../028-g++-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 561s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 561s Selecting previously unselected package g++-14. 561s Preparing to unpack .../029-g++-14_14.2.0-19ubuntu2_armhf.deb ... 561s Unpacking g++-14 (14.2.0-19ubuntu2) ... 561s Selecting previously unselected package g++-arm-linux-gnueabihf. 562s Preparing to unpack .../030-g++-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 562s Unpacking g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 562s Selecting previously unselected package g++. 562s Preparing to unpack .../031-g++_4%3a14.2.0-1ubuntu1_armhf.deb ... 562s Unpacking g++ (4:14.2.0-1ubuntu1) ... 562s Selecting previously unselected package libgfortran5:armhf. 562s Preparing to unpack .../032-libgfortran5_15-20250404-0ubuntu1_armhf.deb ... 562s Unpacking libgfortran5:armhf (15-20250404-0ubuntu1) ... 562s Selecting previously unselected package libgfortran-14-dev:armhf. 562s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-19ubuntu2_armhf.deb ... 562s Unpacking libgfortran-14-dev:armhf (14.2.0-19ubuntu2) ... 562s Selecting previously unselected package gfortran-14-arm-linux-gnueabihf. 562s Preparing to unpack .../034-gfortran-14-arm-linux-gnueabihf_14.2.0-19ubuntu2_armhf.deb ... 562s Unpacking gfortran-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 562s Selecting previously unselected package gfortran-14. 562s Preparing to unpack .../035-gfortran-14_14.2.0-19ubuntu2_armhf.deb ... 562s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 562s Selecting previously unselected package libaec0:armhf. 562s Preparing to unpack .../036-libaec0_1.1.3-1_armhf.deb ... 562s Unpacking libaec0:armhf (1.1.3-1) ... 562s Selecting previously unselected package libblas3:armhf. 562s Preparing to unpack .../037-libblas3_3.12.1-2_armhf.deb ... 562s Unpacking libblas3:armhf (3.12.1-2) ... 562s Selecting previously unselected package libfreetype6:armhf. 562s Preparing to unpack .../038-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 562s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 562s Selecting previously unselected package libfontconfig1:armhf. 563s Preparing to unpack .../039-libfontconfig1_2.15.0-2.2ubuntu1_armhf.deb ... 563s Unpacking libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 563s Selecting previously unselected package libpixman-1-0:armhf. 563s Preparing to unpack .../040-libpixman-1-0_0.44.0-3_armhf.deb ... 563s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 563s Selecting previously unselected package libxcb-render0:armhf. 563s Preparing to unpack .../041-libxcb-render0_1.17.0-2_armhf.deb ... 563s Unpacking libxcb-render0:armhf (1.17.0-2) ... 563s Selecting previously unselected package libxcb-shm0:armhf. 563s Preparing to unpack .../042-libxcb-shm0_1.17.0-2_armhf.deb ... 563s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 563s Selecting previously unselected package libxrender1:armhf. 563s Preparing to unpack .../043-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 563s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 563s Selecting previously unselected package libcairo2:armhf. 563s Preparing to unpack .../044-libcairo2_1.18.4-1_armhf.deb ... 563s Unpacking libcairo2:armhf (1.18.4-1) ... 563s Selecting previously unselected package libdeflate0:armhf. 563s Preparing to unpack .../045-libdeflate0_1.23-1_armhf.deb ... 563s Unpacking libdeflate0:armhf (1.23-1) ... 563s Selecting previously unselected package libdouble-conversion3:armhf. 563s Preparing to unpack .../046-libdouble-conversion3_3.3.1-1_armhf.deb ... 563s Unpacking libdouble-conversion3:armhf (3.3.1-1) ... 563s Selecting previously unselected package libfftw3-double3:armhf. 563s Preparing to unpack .../047-libfftw3-double3_3.3.10-2fakesync1build1_armhf.deb ... 563s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 563s Selecting previously unselected package libwayland-server0:armhf. 563s Preparing to unpack .../048-libwayland-server0_1.23.1-3_armhf.deb ... 563s Unpacking libwayland-server0:armhf (1.23.1-3) ... 563s Selecting previously unselected package libllvm19:armhf. 563s Preparing to unpack .../049-libllvm19_1%3a19.1.7-3ubuntu1_armhf.deb ... 563s Unpacking libllvm19:armhf (1:19.1.7-3ubuntu1) ... 565s Selecting previously unselected package libx11-xcb1:armhf. 565s Preparing to unpack .../050-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 565s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 565s Selecting previously unselected package libxcb-dri3-0:armhf. 565s Preparing to unpack .../051-libxcb-dri3-0_1.17.0-2_armhf.deb ... 565s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 565s Selecting previously unselected package libxcb-present0:armhf. 565s Preparing to unpack .../052-libxcb-present0_1.17.0-2_armhf.deb ... 565s Unpacking libxcb-present0:armhf (1.17.0-2) ... 565s Selecting previously unselected package libxcb-randr0:armhf. 565s Preparing to unpack .../053-libxcb-randr0_1.17.0-2_armhf.deb ... 565s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 565s Selecting previously unselected package libxcb-sync1:armhf. 565s Preparing to unpack .../054-libxcb-sync1_1.17.0-2_armhf.deb ... 565s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 565s Selecting previously unselected package libxcb-xfixes0:armhf. 565s Preparing to unpack .../055-libxcb-xfixes0_1.17.0-2_armhf.deb ... 565s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 565s Selecting previously unselected package libxshmfence1:armhf. 565s Preparing to unpack .../056-libxshmfence1_1.3.3-1_armhf.deb ... 565s Unpacking libxshmfence1:armhf (1.3.3-1) ... 565s Selecting previously unselected package mesa-libgallium:armhf. 565s Preparing to unpack .../057-mesa-libgallium_25.0.3-1ubuntu2_armhf.deb ... 565s Unpacking mesa-libgallium:armhf (25.0.3-1ubuntu2) ... 565s Selecting previously unselected package libgbm1:armhf. 565s Preparing to unpack .../058-libgbm1_25.0.3-1ubuntu2_armhf.deb ... 565s Unpacking libgbm1:armhf (25.0.3-1ubuntu2) ... 565s Selecting previously unselected package libvulkan1:armhf. 565s Preparing to unpack .../059-libvulkan1_1.4.304.0-1_armhf.deb ... 565s Unpacking libvulkan1:armhf (1.4.304.0-1) ... 565s Selecting previously unselected package libgl1-mesa-dri:armhf. 565s Preparing to unpack .../060-libgl1-mesa-dri_25.0.3-1ubuntu2_armhf.deb ... 565s Unpacking libgl1-mesa-dri:armhf (25.0.3-1ubuntu2) ... 565s Selecting previously unselected package libglvnd0:armhf. 565s Preparing to unpack .../061-libglvnd0_1.7.0-1build1_armhf.deb ... 565s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 565s Selecting previously unselected package libxcb-glx0:armhf. 565s Preparing to unpack .../062-libxcb-glx0_1.17.0-2_armhf.deb ... 565s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 565s Selecting previously unselected package libxxf86vm1:armhf. 566s Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 566s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 566s Selecting previously unselected package libglx-mesa0:armhf. 566s Preparing to unpack .../064-libglx-mesa0_25.0.3-1ubuntu2_armhf.deb ... 566s Unpacking libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 566s Selecting previously unselected package libglx0:armhf. 566s Preparing to unpack .../065-libglx0_1.7.0-1build1_armhf.deb ... 566s Unpacking libglx0:armhf (1.7.0-1build1) ... 566s Selecting previously unselected package libgl1:armhf. 566s Preparing to unpack .../066-libgl1_1.7.0-1build1_armhf.deb ... 566s Unpacking libgl1:armhf (1.7.0-1build1) ... 566s Selecting previously unselected package libgl2ps1.4. 566s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ... 566s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 566s Selecting previously unselected package libglew2.2:armhf. 566s Preparing to unpack .../068-libglew2.2_2.2.0-4build1_armhf.deb ... 566s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 566s Selecting previously unselected package libsz2:armhf. 566s Preparing to unpack .../069-libsz2_1.1.3-1_armhf.deb ... 566s Unpacking libsz2:armhf (1.1.3-1) ... 566s Selecting previously unselected package libhdf5-310:armhf. 566s Preparing to unpack .../070-libhdf5-310_1.14.5+repack-3_armhf.deb ... 566s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 566s Selecting previously unselected package libhdf5-hl-310:armhf. 566s Preparing to unpack .../071-libhdf5-hl-310_1.14.5+repack-3_armhf.deb ... 566s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3) ... 566s Selecting previously unselected package libhwloc15:armhf. 566s Preparing to unpack .../072-libhwloc15_2.12.0-1_armhf.deb ... 566s Unpacking libhwloc15:armhf (2.12.0-1) ... 566s Selecting previously unselected package libjpeg-turbo8:armhf. 566s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 566s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 566s Selecting previously unselected package libjpeg8:armhf. 566s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_armhf.deb ... 566s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 566s Selecting previously unselected package libjsoncpp26:armhf. 566s Preparing to unpack .../075-libjsoncpp26_1.9.6-3_armhf.deb ... 566s Unpacking libjsoncpp26:armhf (1.9.6-3) ... 566s Selecting previously unselected package libkim-api2:armhf. 566s Preparing to unpack .../076-libkim-api2_2.3.0-1ubuntu1_armhf.deb ... 566s Unpacking libkim-api2:armhf (2.3.0-1ubuntu1) ... 566s Selecting previously unselected package liblapack3:armhf. 566s Preparing to unpack .../077-liblapack3_3.12.1-2_armhf.deb ... 566s Unpacking liblapack3:armhf (3.12.1-2) ... 567s Selecting previously unselected package libmpich12:armhf. 567s Preparing to unpack .../078-libmpich12_4.2.1-5_armhf.deb ... 567s Unpacking libmpich12:armhf (4.2.1-5) ... 567s Selecting previously unselected package libnetcdf22:armhf. 567s Preparing to unpack .../079-libnetcdf22_1%3a4.9.3-1_armhf.deb ... 567s Unpacking libnetcdf22:armhf (1:4.9.3-1) ... 567s Selecting previously unselected package libpython3.13:armhf. 567s Preparing to unpack .../080-libpython3.13_3.13.3-2_armhf.deb ... 567s Unpacking libpython3.13:armhf (3.13.3-2) ... 567s Selecting previously unselected package libvoro++1. 567s Preparing to unpack .../081-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 567s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 567s Selecting previously unselected package libogg0:armhf. 567s Preparing to unpack .../082-libogg0_1.3.5-3build1_armhf.deb ... 567s Unpacking libogg0:armhf (1.3.5-3build1) ... 567s Selecting previously unselected package libopengl0:armhf. 567s Preparing to unpack .../083-libopengl0_1.7.0-1build1_armhf.deb ... 567s Unpacking libopengl0:armhf (1.7.0-1build1) ... 567s Selecting previously unselected package proj-data. 567s Preparing to unpack .../084-proj-data_9.5.1-1_all.deb ... 567s Unpacking proj-data (9.5.1-1) ... 568s Selecting previously unselected package libjbig0:armhf. 568s Preparing to unpack .../085-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 568s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 568s Selecting previously unselected package liblerc4:armhf. 568s Preparing to unpack .../086-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 568s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 568s Selecting previously unselected package libsharpyuv0:armhf. 568s Preparing to unpack .../087-libsharpyuv0_1.5.0-0.1_armhf.deb ... 568s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 568s Selecting previously unselected package libwebp7:armhf. 568s Preparing to unpack .../088-libwebp7_1.5.0-0.1_armhf.deb ... 568s Unpacking libwebp7:armhf (1.5.0-0.1) ... 568s Selecting previously unselected package libtiff6:armhf. 568s Preparing to unpack .../089-libtiff6_4.7.0-3ubuntu1_armhf.deb ... 568s Unpacking libtiff6:armhf (4.7.0-3ubuntu1) ... 568s Selecting previously unselected package libproj25:armhf. 568s Preparing to unpack .../090-libproj25_9.5.1-1_armhf.deb ... 568s Unpacking libproj25:armhf (9.5.1-1) ... 568s Selecting previously unselected package libtbbbind-2-5:armhf. 568s Preparing to unpack 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unselected package liblammps0t64:armhf. 571s Preparing to unpack .../102-liblammps0t64_20240207+dfsg-3build3_armhf.deb ... 571s Unpacking liblammps0t64:armhf (20240207+dfsg-3build3) ... 571s Selecting previously unselected package libnuma-dev:armhf. 571s Preparing to unpack .../103-libnuma-dev_2.0.18-1build1_armhf.deb ... 571s Unpacking libnuma-dev:armhf (2.0.18-1build1) ... 571s Selecting previously unselected package libltdl7:armhf. 571s Preparing to unpack .../104-libltdl7_2.5.4-4_armhf.deb ... 571s Unpacking libltdl7:armhf (2.5.4-4) ... 571s Selecting previously unselected package libltdl-dev:armhf. 571s Preparing to unpack .../105-libltdl-dev_2.5.4-4_armhf.deb ... 571s Unpacking libltdl-dev:armhf (2.5.4-4) ... 571s Selecting previously unselected package libhwloc-dev:armhf. 571s Preparing to unpack .../106-libhwloc-dev_2.12.0-1_armhf.deb ... 571s Unpacking libhwloc-dev:armhf (2.12.0-1) ... 571s Selecting previously unselected package hwloc-nox. 571s Preparing to unpack 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libwebp7:armhf (1.5.0-0.1) ... 573s Setting up libubsan1:armhf (15-20250404-0ubuntu1) ... 573s Setting up libmpich12:armhf (4.2.1-5) ... 573s Setting up libxshmfence1:armhf (1.3.3-1) ... 573s Setting up libcrypt-dev:armhf (1:4.4.38-1) ... 573s Setting up libxcb-randr0:armhf (1.17.0-2) ... 573s Setting up libasan8:armhf (15-20250404-0ubuntu1) ... 573s Setting up libxss1:armhf (1:1.2.3-1build3) ... 573s Setting up libgcc-14-dev:armhf (14.2.0-19ubuntu2) ... 573s Setting up libisl23:armhf (0.27-1) ... 573s Setting up libc-dev-bin (2.41-6ubuntu1) ... 573s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 573s Setting up libcc1-0:armhf (15-20250404-0ubuntu1) ... 573s Setting up libsz2:armhf (1.1.3-1) ... 573s Setting up cpp-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 573s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 573s Setting up automake (1:1.17-3ubuntu1) ... 573s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 573s Setting up 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libfontconfig1:armhf (2.15.0-2.2ubuntu1) ... 574s Setting up libstdc++-14-dev:armhf (14.2.0-19ubuntu2) ... 574s Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 574s Setting up gfortran-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 574s Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 574s Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ... 574s Setting up g++-14-arm-linux-gnueabihf (14.2.0-19ubuntu2) ... 574s Setting up libxft2:armhf (2.3.6-1build1) ... 574s Setting up libglx-mesa0:armhf (25.0.3-1ubuntu2) ... 574s Setting up libglx0:armhf (1.7.0-1build1) ... 574s Setting up libproj25:armhf (9.5.1-1) ... 574s Setting up mpich (4.2.1-5) ... 574s update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode 574s update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode 574s Setting up libtk8.6:armhf (8.6.16-1) ... 574s Setting up libnetcdf22:armhf (1:4.9.3-1) ... 574s Setting up mpi-default-bin (1.18) ... 574s Setting up libtbb12:armhf (2022.0.0-2) ... 574s Setting up libcairo2:armhf (1.18.4-1) ... 574s Setting up gcc-14 (14.2.0-19ubuntu2) ... 574s Setting up libnuma-dev:armhf (2.0.18-1build1) ... 574s Setting up libgl1:armhf (1.7.0-1build1) ... 574s Setting up libtheoradec1:armhf (1.2.0~alpha1+dfsg-6) ... 574s Setting up libglew2.2:armhf (2.2.0-4build1) ... 574s Setting up cpp (4:14.2.0-1ubuntu1) ... 574s Setting up libhwloc-dev:armhf (2.12.0-1) ... 574s Setting up g++-14 (14.2.0-19ubuntu2) ... 574s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 574s Setting up g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 574s Setting up gcc (4:14.2.0-1ubuntu1) ... 574s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 574s Setting up libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 574s Setting up g++ (4:14.2.0-1ubuntu1) ... 574s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 574s Setting up liblammps0t64:armhf (20240207+dfsg-3build3) ... 574s Setting up libmpich-dev:armhf (4.2.1-5) ... 574s update-alternatives: using /usr/include/arm-linux-gnueabihf/mpich to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode 574s Setting up mpi-default-dev (1.18) ... 574s Setting up liblammps-dev (20240207+dfsg-3build3) ... 574s Setting up python3-lammps (20240207+dfsg-3build3) ... 574s Processing triggers for man-db (2.13.0-1) ... 575s Processing triggers for install-info (7.1.1-1) ... 575s Processing triggers for libc-bin (2.41-6ubuntu1) ... 643s autopkgtest [00:51:22]: test command1: cd python/examples; python3 demo.py 643s autopkgtest [00:51:22]: test command1: [----------------------- 646s LAMMPS (7 Feb 2024 - Update 1) 646s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 646s using 1 OpenMP thread(s) per MPI task 646s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 646s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 646s 1 by 1 by 1 MPI processor grid 646s Created 4000 atoms 646s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 646s create_atoms CPU = 0.004 seconds 646s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 646s Neighbor list info ... 646s update: every = 20 steps, delay = 0 steps, check = no 646s max neighbors/atom: 2000, page size: 100000 646s master list distance cutoff = 2.8 646s ghost atom cutoff = 2.8 646s binsize = 1.4, bins = 12 12 12 646s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 646s (1) pair lj/cut, perpetual 646s attributes: half, newton on 646s pair build: half/bin/atomonly/newton 646s stencil: half/bin/3d 646s bin: standard 646s Setting up Verlet run ... 646s Unit style : lj 646s Current step : 0 646s Time step : 0.005 646s Per MPI rank memory allocation (min/avg/max) = 3.513 | 3.513 | 3.513 Mbytes 646s Step Temp E_pair E_mol TotEng Press 646s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 646s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 646s Loop time of 0.286658 on 1 procs for 100 steps with 4000 atoms 646s 646s Performance: 150701.976 tau/day, 348.847 timesteps/s, 1.395 Matom-step/s 646s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 646s 646s MPI task timing breakdown: 646s Section | min time | avg time | max time |%varavg| %total 646s --------------------------------------------------------------- 646s Pair | 0.23709 | 0.23709 | 0.23709 | 0.0 | 82.71 646s Neigh | 0.031763 | 0.031763 | 0.031763 | 0.0 | 11.08 646s Comm | 0.0089801 | 0.0089801 | 0.0089801 | 0.0 | 3.13 646s Output | 9.4121e-05 | 9.4121e-05 | 9.4121e-05 | 0.0 | 0.03 646s Modify | 0.0055745 | 0.0055745 | 0.0055745 | 0.0 | 1.94 646s Other | | 0.00316 | | | 1.10 646s 646s Nlocal: 4000 ave 4000 max 4000 min 646s Histogram: 1 0 0 0 0 0 0 0 0 0 646s Nghost: 5758 ave 5758 max 5758 min 646s Histogram: 1 0 0 0 0 0 0 0 0 0 646s Neighs: 150488 ave 150488 max 150488 min 646s Histogram: 1 0 0 0 0 0 0 0 0 0 646s 646s Total # of neighbors = 150488 646s Ave neighs/atom = 37.622 646s Neighbor list builds = 5 646s Dangerous builds not checked 646s 646s Python output: 646s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 646s Temperature from compute = 0.7683848148006243 646s Energy from equal-style variable = -5.774392400140558 646s Velocity component from atom-style variable = -0.16696430269966717 646s Volume from get_thermo = 4738.213693437576 646s Natoms from get_natoms = 4000 646s Global coords from gather_atoms = 16.651271530416228 16.79001077301678 0.19047524160173676 646s Changed x[0][0] via scatter_atoms = 17.651271530416228 646s Total wall time: 0:00:00 646s autopkgtest [00:51:25]: test command1: -----------------------] 650s command1 PASS 650s autopkgtest [00:51:29]: test command1: - - - - - - - - - - results - - - - - - - - - - 655s autopkgtest [00:51:34]: @@@@@@@@@@@@@@@@@@@@ summary 655s crack PASS 655s dipole PASS 655s ellipse PASS 655s flow PASS 655s friction PASS 655s hugo PASS 655s command1 PASS