0s autopkgtest [00:45:54]: starting date and time: 2025-05-02 00:45:54+0000 0s autopkgtest [00:45:54]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [00:45:54]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.l9vnoe26/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:make-dfsg --apt-upgrade rdkit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=make-dfsg/4.4.1-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-17.secgroup --name adt-questing-arm64-rdkit-20250502-004554-juju-7f2275-prod-proposed-migration-environment-15-08c26371-690b-4d79-9f95-257cc5775718 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 127s autopkgtest [00:48:01]: testbed dpkg architecture: arm64 127s autopkgtest [00:48:01]: testbed apt version: 3.0.0 128s autopkgtest [00:48:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 128s autopkgtest [00:48:02]: testbed release detected to be: None 129s autopkgtest [00:48:03]: updating testbed package index (apt update) 129s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 129s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 129s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 130s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 130s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [179 kB] 130s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [57.4 kB] 130s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2255 kB] 130s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [196 kB] 130s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [567 kB] 130s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [3024 B] 130s Fetched 3367 kB in 1s (2751 kB/s) 132s Reading package lists... 133s autopkgtest [00:48:07]: upgrading testbed (apt dist-upgrade and autopurge) 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 134s Starting 2 pkgProblemResolver with broken count: 0 134s Done 135s Entering ResolveByKeep 136s 136s Calculating upgrade... 136s The following packages will be upgraded: 136s dpkg dpkg-dev libdpkg-perl make 136s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Need to get 2852 kB of archives. 136s After this operation, 1024 B of additional disk space will be used. 136s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 dpkg arm64 1.22.18ubuntu3 [1288 kB] 137s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 dpkg-dev all 1.22.18ubuntu3 [1089 kB] 137s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libdpkg-perl all 1.22.18ubuntu3 [281 kB] 138s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 make arm64 4.4.1-2 [194 kB] 138s Fetched 2852 kB in 1s (2383 kB/s) 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 139s Preparing to unpack .../dpkg_1.22.18ubuntu3_arm64.deb ... 139s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 139s Setting up dpkg (1.22.18ubuntu3) ... 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 140s Preparing to unpack .../dpkg-dev_1.22.18ubuntu3_all.deb ... 140s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 140s Preparing to unpack .../libdpkg-perl_1.22.18ubuntu3_all.deb ... 140s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 140s Preparing to unpack .../make_4.4.1-2_arm64.deb ... 140s Unpacking make (4.4.1-2) over (4.4.1-1) ... 140s Setting up make (4.4.1-2) ... 140s Setting up libdpkg-perl (1.22.18ubuntu3) ... 140s Setting up dpkg-dev (1.22.18ubuntu3) ... 140s Processing triggers for man-db (2.13.0-1) ... 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 144s Starting pkgProblemResolver with broken count: 0 144s Starting 2 pkgProblemResolver with broken count: 0 144s Done 145s Solving dependencies... 146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s autopkgtest [00:48:21]: rebooting testbed after setup commands that affected boot 169s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 176s autopkgtest [00:48:50]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 179s autopkgtest [00:48:53]: @@@@@@@@@@@@@@@@@@@@ apt-source rdkit 190s Get:1 http://ftpmaster.internal/ubuntu questing/universe rdkit 202409.6-2 (dsc) [3055 B] 190s Get:2 http://ftpmaster.internal/ubuntu questing/universe rdkit 202409.6-2 (tar) [63.5 MB] 190s Get:3 http://ftpmaster.internal/ubuntu questing/universe rdkit 202409.6-2 (diff) [40.0 kB] 190s gpgv: Signature made Sun Mar 9 10:04:40 2025 UTC 190s gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 190s gpgv: Can't check signature: No public key 190s dpkg-source: warning: cannot verify inline signature for ./rdkit_202409.6-2.dsc: no acceptable signature found 194s autopkgtest [00:49:08]: testing package rdkit version 202409.6-2 195s autopkgtest [00:49:09]: build not needed 206s autopkgtest [00:49:20]: test installcheck: preparing testbed 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 207s Starting 2 pkgProblemResolver with broken count: 0 207s Done 208s The following NEW packages will be installed: 208s fontconfig-config fonts-freefont-ttf libblas3 libboost-iostreams1.83.0 208s libboost-numpy1.83.0 libboost-python1.83.0 libboost-serialization1.83.0 208s libcairo2 libcoordgen3 libfontconfig1 libgfortran5 libinchi1.07 208s libio-pty-perl libipc-run-perl libjs-jquery libjs-underscore libjson-perl 208s liblapack3 libllvm20 libmaeparser1 libpixman-1-0 libpq5 librdkit-dev 208s librdkit1t64 libxcb-render0 libxcb-shm0 libxrender1 libxslt1.1 postgresql-17 208s postgresql-17-rdkit postgresql-client-17 postgresql-client-common 208s postgresql-common postgresql-common-dev python3-numpy python3-numpy-dev 208s python3-rdkit rdkit-data rdkit-doc ssl-cert 208s 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. 208s Need to get 92.4 MB of archives. 208s After this operation, 460 MB of additional disk space will be used. 208s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 209s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 postgresql-client-common all 274 [47.6 kB] 209s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libio-pty-perl arm64 1:1.20-1build3 [31.3 kB] 209s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 libipc-run-perl all 20231003.0-2 [91.5 kB] 209s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 postgresql-common-dev all 274 [73.0 kB] 209s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 ssl-cert all 1.1.3ubuntu1 [18.7 kB] 209s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 postgresql-common all 274 [101 kB] 209s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 209s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 209s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 209s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 209s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 209s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-freefont-ttf all 20211204+svn4273-2 [5641 kB] 210s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 210s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-4.2ubuntu1 [259 kB] 210s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 libboost-python1.83.0 arm64 1.83.0-4.2ubuntu1 [309 kB] 210s Get:17 http://ftpmaster.internal/ubuntu questing/universe arm64 libboost-numpy1.83.0 arm64 1.83.0-4.2ubuntu1 [242 kB] 210s Get:18 http://ftpmaster.internal/ubuntu questing/universe arm64 libboost-serialization1.83.0 arm64 1.83.0-4.2ubuntu1 [338 kB] 210s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 210s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 210s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 210s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 210s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 210s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 210s Get:25 http://ftpmaster.internal/ubuntu questing/universe arm64 libcoordgen3 arm64 3.0.2-1 [207 kB] 210s Get:26 http://ftpmaster.internal/ubuntu questing/universe arm64 libinchi1.07 arm64 1.07.3+dfsg-1 [573 kB] 210s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 210s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 210s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 libllvm20 arm64 1:20.1.2-0ubuntu1 [29.1 MB] 210s Get:30 http://ftpmaster.internal/ubuntu questing/universe arm64 libmaeparser1 arm64 1.3.1-1build1 [84.5 kB] 210s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 libpq5 arm64 17.4-1 [142 kB] 210s Get:32 http://ftpmaster.internal/ubuntu questing/universe arm64 librdkit1t64 arm64 202409.6-2 [5378 kB] 211s Get:33 http://ftpmaster.internal/ubuntu questing/universe arm64 librdkit-dev arm64 202409.6-2 [348 kB] 211s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu4 [168 kB] 211s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 postgresql-client-17 arm64 17.4-1 [1342 kB] 211s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 postgresql-17 arm64 17.4-1 [15.6 MB] 211s Get:37 http://ftpmaster.internal/ubuntu questing/universe arm64 postgresql-17-rdkit arm64 202409.6-2 [121 kB] 211s Get:38 http://ftpmaster.internal/ubuntu questing/universe arm64 rdkit-data all 202409.6-2 [12.6 MB] 211s Get:39 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-rdkit arm64 202409.6-2 [4679 kB] 212s Get:40 http://ftpmaster.internal/ubuntu questing/universe arm64 rdkit-doc all 202409.6-2 [6347 kB] 213s Preconfiguring packages ... 213s Fetched 92.4 MB in 4s (22.3 MB/s) 213s Selecting previously unselected package libjson-perl. 214s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 214s Preparing to unpack .../00-libjson-perl_4.10000-1_all.deb ... 214s Unpacking libjson-perl (4.10000-1) ... 214s Selecting previously unselected package postgresql-client-common. 214s Preparing to unpack .../01-postgresql-client-common_274_all.deb ... 214s Unpacking postgresql-client-common (274) ... 214s Selecting previously unselected package libio-pty-perl. 214s Preparing to unpack .../02-libio-pty-perl_1%3a1.20-1build3_arm64.deb ... 214s Unpacking libio-pty-perl (1:1.20-1build3) ... 214s Selecting previously unselected package libipc-run-perl. 214s Preparing to unpack .../03-libipc-run-perl_20231003.0-2_all.deb ... 214s Unpacking libipc-run-perl (20231003.0-2) ... 214s Selecting previously unselected package postgresql-common-dev. 214s Preparing to unpack .../04-postgresql-common-dev_274_all.deb ... 214s Unpacking postgresql-common-dev (274) ... 214s Selecting previously unselected package ssl-cert. 214s Preparing to unpack .../05-ssl-cert_1.1.3ubuntu1_all.deb ... 214s Unpacking ssl-cert (1.1.3ubuntu1) ... 214s Selecting previously unselected package postgresql-common. 214s Preparing to unpack .../06-postgresql-common_274_all.deb ... 214s Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' 214s Unpacking postgresql-common (274) ... 214s Selecting previously unselected package python3-numpy-dev:arm64. 214s Preparing to unpack .../07-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 214s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 214s Selecting previously unselected package libblas3:arm64. 214s Preparing to unpack .../08-libblas3_3.12.1-2_arm64.deb ... 214s Unpacking libblas3:arm64 (3.12.1-2) ... 214s Selecting previously unselected package libgfortran5:arm64. 214s Preparing to unpack .../09-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 214s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 214s Selecting previously unselected package liblapack3:arm64. 214s Preparing to unpack .../10-liblapack3_3.12.1-2_arm64.deb ... 214s Unpacking liblapack3:arm64 (3.12.1-2) ... 214s Selecting previously unselected package python3-numpy. 214s Preparing to unpack .../11-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 214s Unpacking python3-numpy (1:2.2.3+ds-5) ... 215s Selecting previously unselected package fonts-freefont-ttf. 215s Preparing to unpack .../12-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... 215s Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... 215s Selecting previously unselected package fontconfig-config. 215s Preparing to unpack .../13-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 215s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 216s Selecting previously unselected package libboost-iostreams1.83.0:arm64. 216s Preparing to unpack .../14-libboost-iostreams1.83.0_1.83.0-4.2ubuntu1_arm64.deb ... 216s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 216s Selecting previously unselected package libboost-python1.83.0. 216s Preparing to unpack .../15-libboost-python1.83.0_1.83.0-4.2ubuntu1_arm64.deb ... 216s Unpacking libboost-python1.83.0 (1.83.0-4.2ubuntu1) ... 216s Selecting previously unselected package libboost-numpy1.83.0. 216s Preparing to unpack .../16-libboost-numpy1.83.0_1.83.0-4.2ubuntu1_arm64.deb ... 216s Unpacking libboost-numpy1.83.0 (1.83.0-4.2ubuntu1) ... 216s Selecting previously unselected package libboost-serialization1.83.0:arm64. 216s Preparing to unpack .../17-libboost-serialization1.83.0_1.83.0-4.2ubuntu1_arm64.deb ... 216s Unpacking libboost-serialization1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 216s Selecting previously unselected package libfontconfig1:arm64. 216s Preparing to unpack .../18-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 216s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 216s Selecting previously unselected package libpixman-1-0:arm64. 216s Preparing to unpack .../19-libpixman-1-0_0.44.0-3_arm64.deb ... 216s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 216s Selecting previously unselected package libxcb-render0:arm64. 216s Preparing to unpack .../20-libxcb-render0_1.17.0-2_arm64.deb ... 216s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 216s Selecting previously unselected package libxcb-shm0:arm64. 216s Preparing to unpack .../21-libxcb-shm0_1.17.0-2_arm64.deb ... 216s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 216s Selecting previously unselected package libxrender1:arm64. 216s Preparing to unpack .../22-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 216s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 216s Selecting previously unselected package libcairo2:arm64. 216s Preparing to unpack .../23-libcairo2_1.18.4-1_arm64.deb ... 216s Unpacking libcairo2:arm64 (1.18.4-1) ... 216s Selecting previously unselected package libcoordgen3:arm64. 216s Preparing to unpack .../24-libcoordgen3_3.0.2-1_arm64.deb ... 216s Unpacking libcoordgen3:arm64 (3.0.2-1) ... 216s Selecting previously unselected package libinchi1.07. 217s Preparing to unpack .../25-libinchi1.07_1.07.3+dfsg-1_arm64.deb ... 217s Unpacking libinchi1.07 (1.07.3+dfsg-1) ... 217s Selecting previously unselected package libjs-jquery. 217s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 217s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 217s Selecting previously unselected package libjs-underscore. 217s Preparing to unpack .../27-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 217s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 217s Selecting previously unselected package libllvm20:arm64. 217s Preparing to unpack .../28-libllvm20_1%3a20.1.2-0ubuntu1_arm64.deb ... 217s Unpacking libllvm20:arm64 (1:20.1.2-0ubuntu1) ... 218s Selecting previously unselected package libmaeparser1:arm64. 218s Preparing to unpack .../29-libmaeparser1_1.3.1-1build1_arm64.deb ... 218s Unpacking libmaeparser1:arm64 (1.3.1-1build1) ... 218s Selecting previously unselected package libpq5:arm64. 218s Preparing to unpack .../30-libpq5_17.4-1_arm64.deb ... 218s Unpacking libpq5:arm64 (17.4-1) ... 218s Selecting previously unselected package librdkit1t64. 218s Preparing to unpack .../31-librdkit1t64_202409.6-2_arm64.deb ... 218s Unpacking librdkit1t64 (202409.6-2) ... 218s Selecting previously unselected package librdkit-dev. 218s Preparing to unpack .../32-librdkit-dev_202409.6-2_arm64.deb ... 218s Unpacking librdkit-dev (202409.6-2) ... 218s Selecting previously unselected package libxslt1.1:arm64. 218s Preparing to unpack .../33-libxslt1.1_1.1.39-0exp1ubuntu4_arm64.deb ... 218s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu4) ... 219s Selecting previously unselected package postgresql-client-17. 219s Preparing to unpack .../34-postgresql-client-17_17.4-1_arm64.deb ... 219s Unpacking postgresql-client-17 (17.4-1) ... 219s Selecting previously unselected package postgresql-17. 219s Preparing to unpack .../35-postgresql-17_17.4-1_arm64.deb ... 219s Unpacking postgresql-17 (17.4-1) ... 219s Selecting previously unselected package postgresql-17-rdkit. 219s Preparing to unpack .../36-postgresql-17-rdkit_202409.6-2_arm64.deb ... 219s Unpacking postgresql-17-rdkit (202409.6-2) ... 219s Selecting previously unselected package rdkit-data. 219s Preparing to unpack .../37-rdkit-data_202409.6-2_all.deb ... 219s Unpacking rdkit-data (202409.6-2) ... 220s Selecting previously unselected package python3-rdkit. 220s Preparing to unpack .../38-python3-rdkit_202409.6-2_arm64.deb ... 220s Unpacking python3-rdkit (202409.6-2) ... 220s Selecting previously unselected package rdkit-doc. 220s Preparing to unpack .../39-rdkit-doc_202409.6-2_all.deb ... 220s Unpacking rdkit-doc (202409.6-2) ... 221s Setting up postgresql-client-common (274) ... 221s Setting up libboost-python1.83.0 (1.83.0-4.2ubuntu1) ... 221s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 221s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 221s Setting up libio-pty-perl (1:1.20-1build3) ... 221s Setting up libxcb-render0:arm64 (1.17.0-2) ... 221s Setting up libpq5:arm64 (17.4-1) ... 221s Setting up fonts-freefont-ttf (20211204+svn4273-2) ... 221s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 221s Setting up rdkit-data (202409.6-2) ... 221s Setting up libboost-serialization1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 221s Setting up libboost-numpy1.83.0 (1.83.0-4.2ubuntu1) ... 221s Setting up libblas3:arm64 (3.12.1-2) ... 221s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 221s Setting up ssl-cert (1.1.3ubuntu1) ... 222s Created symlink '/etc/systemd/system/multi-user.target.wants/ssl-cert.service' → '/usr/lib/systemd/system/ssl-cert.service'. 222s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 222s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 222s Setting up libllvm20:arm64 (1:20.1.2-0ubuntu1) ... 222s Setting up libipc-run-perl (20231003.0-2) ... 222s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 222s Setting up libjson-perl (4.10000-1) ... 222s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu4) ... 222s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 222s Setting up libcoordgen3:arm64 (3.0.2-1) ... 222s Setting up libinchi1.07 (1.07.3+dfsg-1) ... 222s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 222s Setting up postgresql-common-dev (274) ... 222s Setting up liblapack3:arm64 (3.12.1-2) ... 223s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 223s Setting up postgresql-client-17 (17.4-1) ... 224s update-alternatives: using /usr/share/postgresql/17/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode 224s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 224s Setting up rdkit-doc (202409.6-2) ... 224s Setting up libmaeparser1:arm64 (1.3.1-1build1) ... 224s Setting up postgresql-common (274) ... 225s Creating config file /etc/postgresql-common/createcluster.conf with new version 226s Building PostgreSQL dictionaries from installed myspell/hunspell packages... 226s Removing obsolete dictionary files: 227s Created symlink '/etc/systemd/system/multi-user.target.wants/postgresql.service' → '/usr/lib/systemd/system/postgresql.service'. 227s Setting up python3-numpy (1:2.2.3+ds-5) ... 230s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 230s Setting up postgresql-17 (17.4-1) ... 232s Creating new PostgreSQL cluster 17/main ... 232s /usr/lib/postgresql/17/bin/initdb -D /var/lib/postgresql/17/main --auth-local peer --auth-host scram-sha-256 --no-instructions 232s The files belonging to this database system will be owned by user "postgres". 232s This user must also own the server process. 232s 232s The database cluster will be initialized with locale "C.UTF-8". 232s The default database encoding has accordingly been set to "UTF8". 232s The default text search configuration will be set to "english". 232s 232s Data page checksums are disabled. 232s 232s fixing permissions on existing directory /var/lib/postgresql/17/main ... ok 232s creating subdirectories ... ok 232s selecting dynamic shared memory implementation ... posix 232s selecting default "max_connections" ... 100 232s selecting default "shared_buffers" ... 128MB 232s selecting default time zone ... Etc/UTC 232s creating configuration files ... ok 232s running bootstrap script ... ok 233s performing post-bootstrap initialization ... ok 233s syncing data to disk ... ok 237s Setting up libcairo2:arm64 (1.18.4-1) ... 237s Setting up librdkit1t64 (202409.6-2) ... 237s Setting up postgresql-17-rdkit (202409.6-2) ... 237s Setting up python3-rdkit (202409.6-2) ... 238s Setting up librdkit-dev (202409.6-2) ... 238s Processing triggers for man-db (2.13.0-1) ... 240s Processing triggers for libc-bin (2.41-6ubuntu1) ... 243s autopkgtest [00:49:57]: test installcheck: [----------------------- 243s ### PostgreSQL 17 installcheck ### 243s Creating new PostgreSQL cluster 17/regress ... 247s make: Entering directory '/tmp/autopkgtest.d0q14f/build.n3l/src/Code/PgSQL/rdkit' 247s echo "# +++ regress install-check in +++" && /usr/lib/postgresql/17/lib/pgxs/src/makefiles/../../src/test/regress/pg_regress --inputdir=/tmp/autopkgtest.d0q14f/build.n3l/src --bindir='/usr/lib/postgresql/17/bin' --dbname=contrib_regression rdkit-91 props btree molgist bfpgist-91 bfpgin sfpgist slfpgist fps reaction fmcs query xqm 247s # +++ regress install-check in +++ 247s # using postmaster on localhost, port 5433 250s ok 1 - rdkit-91 3507 ms 250s ok 2 - props 142 ms 251s ok 3 - btree 513 ms 253s ok 4 - molgist 1523 ms 253s ok 5 - bfpgist-91 143 ms 253s ok 6 - bfpgin 233 ms 253s ok 7 - sfpgist 104 ms 253s ok 8 - slfpgist 122 ms 253s ok 9 - fps 151 ms 257s ok 10 - reaction 4168 ms 258s ok 11 - fmcs 274 ms 258s ok 12 - query 83 ms 258s ok 13 - xqm 407 ms 258s 1..13 258s # All 13 tests passed. 258s make: Leaving directory '/tmp/autopkgtest.d0q14f/build.n3l/src/Code/PgSQL/rdkit' 258s Dropping cluster 17/regress ... 259s ### End 17 installcheck ### 259s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 259s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 259s autopkgtest [00:50:13]: test installcheck: -----------------------] 260s autopkgtest [00:50:14]: test installcheck: - - - - - - - - - - results - - - - - - - - - - 260s installcheck PASS 260s autopkgtest [00:50:14]: test importcheck: preparing testbed 455s autopkgtest [00:53:29]: testbed dpkg architecture: arm64 455s autopkgtest [00:53:29]: testbed apt version: 3.0.0 455s autopkgtest [00:53:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 455s autopkgtest [00:53:29]: testbed release detected to be: questing 456s autopkgtest [00:53:30]: updating testbed package index (apt update) 457s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 457s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 457s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 457s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 457s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2255 kB] 457s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [179 kB] 457s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [57.4 kB] 457s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [196 kB] 457s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [567 kB] 457s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [3024 B] 458s Fetched 3367 kB in 1s (2786 kB/s) 459s Reading package lists... 459s autopkgtest [00:53:33]: upgrading testbed (apt dist-upgrade and autopurge) 459s Reading package lists... 460s Building dependency tree... 460s Reading state information... 460s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 460s Starting 2 pkgProblemResolver with broken count: 0 460s Done 461s Entering ResolveByKeep 461s 462s Calculating upgrade... 463s The following packages will be upgraded: 463s dpkg dpkg-dev libdpkg-perl make 463s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 463s Need to get 2852 kB of archives. 463s After this operation, 1024 B of additional disk space will be used. 463s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 dpkg arm64 1.22.18ubuntu3 [1288 kB] 463s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 dpkg-dev all 1.22.18ubuntu3 [1089 kB] 463s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libdpkg-perl all 1.22.18ubuntu3 [281 kB] 463s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 make arm64 4.4.1-2 [194 kB] 463s Fetched 2852 kB in 1s (3929 kB/s) 463s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 463s Preparing to unpack .../dpkg_1.22.18ubuntu3_arm64.deb ... 463s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 464s Setting up dpkg (1.22.18ubuntu3) ... 464s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 464s Preparing to unpack .../dpkg-dev_1.22.18ubuntu3_all.deb ... 464s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 464s Preparing to unpack .../libdpkg-perl_1.22.18ubuntu3_all.deb ... 464s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 464s Preparing to unpack .../make_4.4.1-2_arm64.deb ... 464s Unpacking make (4.4.1-2) over (4.4.1-1) ... 464s Setting up make (4.4.1-2) ... 464s Setting up libdpkg-perl (1.22.18ubuntu3) ... 464s Setting up dpkg-dev (1.22.18ubuntu3) ... 464s Processing triggers for man-db (2.13.0-1) ... 467s Reading package lists... 467s Building dependency tree... 467s Reading state information... 467s Starting pkgProblemResolver with broken count: 0 467s Starting 2 pkgProblemResolver with broken count: 0 467s Done 468s Solving dependencies... 468s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 468s autopkgtest [00:53:42]: rebooting testbed after setup commands that affected boot 497s Reading package lists... 497s Building dependency tree... 497s Reading state information... 498s Starting pkgProblemResolver with broken count: 0 498s Starting 2 pkgProblemResolver with broken count: 0 498s Done 499s The following NEW packages will be installed: 499s fontconfig-config fonts-freefont-ttf libblas3 libboost-iostreams1.83.0 499s libboost-numpy1.83.0 libboost-python1.83.0 libboost-serialization1.83.0 499s libcairo2 libcoordgen3 libfontconfig1 libgfortran5 libinchi1.07 499s libio-pty-perl libipc-run-perl libjs-jquery libjs-underscore libjson-perl 499s liblapack3 libllvm20 libmaeparser1 libpixman-1-0 libpq5 librdkit-dev 499s librdkit1t64 libxcb-render0 libxcb-shm0 libxrender1 libxslt1.1 postgresql-17 499s postgresql-17-rdkit postgresql-client-17 postgresql-client-common 499s postgresql-common postgresql-common-dev python3-numpy python3-numpy-dev 499s python3-rdkit rdkit-data rdkit-doc ssl-cert 499s 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. 499s Need to get 92.4 MB of archives. 499s After this operation, 460 MB of additional disk space will be used. 499s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 499s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 postgresql-client-common all 274 [47.6 kB] 499s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libio-pty-perl arm64 1:1.20-1build3 [31.3 kB] 499s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 libipc-run-perl all 20231003.0-2 [91.5 kB] 499s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 postgresql-common-dev all 274 [73.0 kB] 499s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 ssl-cert all 1.1.3ubuntu1 [18.7 kB] 499s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 postgresql-common all 274 [101 kB] 499s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 499s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 499s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 499s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 500s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 501s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-freefont-ttf all 20211204+svn4273-2 [5641 kB] 501s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 501s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-4.2ubuntu1 [259 kB] 501s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 libboost-python1.83.0 arm64 1.83.0-4.2ubuntu1 [309 kB] 501s Get:17 http://ftpmaster.internal/ubuntu questing/universe arm64 libboost-numpy1.83.0 arm64 1.83.0-4.2ubuntu1 [242 kB] 501s Get:18 http://ftpmaster.internal/ubuntu questing/universe arm64 libboost-serialization1.83.0 arm64 1.83.0-4.2ubuntu1 [338 kB] 501s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 501s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 501s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 501s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 501s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 501s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 501s Get:25 http://ftpmaster.internal/ubuntu questing/universe arm64 libcoordgen3 arm64 3.0.2-1 [207 kB] 501s Get:26 http://ftpmaster.internal/ubuntu questing/universe arm64 libinchi1.07 arm64 1.07.3+dfsg-1 [573 kB] 501s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 501s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 501s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 libllvm20 arm64 1:20.1.2-0ubuntu1 [29.1 MB] 503s Get:30 http://ftpmaster.internal/ubuntu questing/universe arm64 libmaeparser1 arm64 1.3.1-1build1 [84.5 kB] 503s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 libpq5 arm64 17.4-1 [142 kB] 503s Get:32 http://ftpmaster.internal/ubuntu questing/universe arm64 librdkit1t64 arm64 202409.6-2 [5378 kB] 503s Get:33 http://ftpmaster.internal/ubuntu questing/universe arm64 librdkit-dev arm64 202409.6-2 [348 kB] 503s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu4 [168 kB] 503s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 postgresql-client-17 arm64 17.4-1 [1342 kB] 503s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 postgresql-17 arm64 17.4-1 [15.6 MB] 503s Get:37 http://ftpmaster.internal/ubuntu questing/universe arm64 postgresql-17-rdkit arm64 202409.6-2 [121 kB] 503s Get:38 http://ftpmaster.internal/ubuntu questing/universe arm64 rdkit-data all 202409.6-2 [12.6 MB] 504s Get:39 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-rdkit arm64 202409.6-2 [4679 kB] 504s Get:40 http://ftpmaster.internal/ubuntu questing/universe arm64 rdkit-doc all 202409.6-2 [6347 kB] 505s Preconfiguring packages ... 505s Fetched 92.4 MB in 5s (17.3 MB/s) 505s Selecting previously unselected package libjson-perl. 506s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 506s Preparing to unpack .../00-libjson-perl_4.10000-1_all.deb ... 506s Unpacking libjson-perl (4.10000-1) ... 506s Selecting previously unselected package postgresql-client-common. 506s Preparing to unpack .../01-postgresql-client-common_274_all.deb ... 506s Unpacking postgresql-client-common (274) ... 506s Selecting previously unselected package libio-pty-perl. 506s Preparing to unpack .../02-libio-pty-perl_1%3a1.20-1build3_arm64.deb ... 506s Unpacking libio-pty-perl (1:1.20-1build3) ... 506s Selecting previously unselected package libipc-run-perl. 506s Preparing to unpack .../03-libipc-run-perl_20231003.0-2_all.deb ... 506s Unpacking libipc-run-perl (20231003.0-2) ... 506s Selecting previously unselected package postgresql-common-dev. 506s Preparing to unpack .../04-postgresql-common-dev_274_all.deb ... 506s Unpacking postgresql-common-dev (274) ... 506s Selecting previously unselected package ssl-cert. 506s Preparing to unpack .../05-ssl-cert_1.1.3ubuntu1_all.deb ... 506s Unpacking ssl-cert (1.1.3ubuntu1) ... 506s Selecting previously unselected package postgresql-common. 506s Preparing to unpack .../06-postgresql-common_274_all.deb ... 506s Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' 506s Unpacking postgresql-common (274) ... 506s Selecting previously unselected package python3-numpy-dev:arm64. 507s Preparing to unpack .../07-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 507s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 507s Selecting previously unselected package libblas3:arm64. 507s Preparing to unpack .../08-libblas3_3.12.1-2_arm64.deb ... 507s Unpacking libblas3:arm64 (3.12.1-2) ... 507s Selecting previously unselected package libgfortran5:arm64. 507s Preparing to unpack .../09-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 507s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 507s Selecting previously unselected package liblapack3:arm64. 507s Preparing to unpack .../10-liblapack3_3.12.1-2_arm64.deb ... 507s Unpacking liblapack3:arm64 (3.12.1-2) ... 507s Selecting previously unselected package python3-numpy. 507s Preparing to unpack .../11-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 507s Unpacking python3-numpy (1:2.2.3+ds-5) ... 507s Selecting previously unselected package fonts-freefont-ttf. 507s Preparing to unpack .../12-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... 507s Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... 507s Selecting previously unselected package fontconfig-config. 508s Preparing to unpack .../13-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 508s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 508s Selecting previously unselected package libboost-iostreams1.83.0:arm64. 508s Preparing to unpack .../14-libboost-iostreams1.83.0_1.83.0-4.2ubuntu1_arm64.deb ... 508s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 508s Selecting previously unselected package libboost-python1.83.0. 508s Preparing to unpack .../15-libboost-python1.83.0_1.83.0-4.2ubuntu1_arm64.deb ... 508s Unpacking libboost-python1.83.0 (1.83.0-4.2ubuntu1) ... 508s Selecting previously unselected package libboost-numpy1.83.0. 508s Preparing to unpack .../16-libboost-numpy1.83.0_1.83.0-4.2ubuntu1_arm64.deb ... 508s Unpacking libboost-numpy1.83.0 (1.83.0-4.2ubuntu1) ... 508s Selecting previously unselected package libboost-serialization1.83.0:arm64. 509s Preparing to unpack .../17-libboost-serialization1.83.0_1.83.0-4.2ubuntu1_arm64.deb ... 509s Unpacking libboost-serialization1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 509s Selecting previously unselected package libfontconfig1:arm64. 509s Preparing to unpack .../18-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 509s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 509s Selecting previously unselected package libpixman-1-0:arm64. 509s Preparing to unpack .../19-libpixman-1-0_0.44.0-3_arm64.deb ... 509s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 509s Selecting previously unselected package libxcb-render0:arm64. 509s Preparing to unpack .../20-libxcb-render0_1.17.0-2_arm64.deb ... 509s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 509s Selecting previously unselected package libxcb-shm0:arm64. 509s Preparing to unpack .../21-libxcb-shm0_1.17.0-2_arm64.deb ... 509s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 509s Selecting previously unselected package libxrender1:arm64. 509s Preparing to unpack .../22-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 509s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 509s Selecting previously unselected package libcairo2:arm64. 509s Preparing to unpack .../23-libcairo2_1.18.4-1_arm64.deb ... 509s Unpacking libcairo2:arm64 (1.18.4-1) ... 509s Selecting previously unselected package libcoordgen3:arm64. 510s Preparing to unpack .../24-libcoordgen3_3.0.2-1_arm64.deb ... 510s Unpacking libcoordgen3:arm64 (3.0.2-1) ... 510s Selecting previously unselected package libinchi1.07. 510s Preparing to unpack .../25-libinchi1.07_1.07.3+dfsg-1_arm64.deb ... 510s Unpacking libinchi1.07 (1.07.3+dfsg-1) ... 510s Selecting previously unselected package libjs-jquery. 510s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 510s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 510s Selecting previously unselected package libjs-underscore. 510s Preparing to unpack .../27-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 510s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 510s Selecting previously unselected package libllvm20:arm64. 510s Preparing to unpack .../28-libllvm20_1%3a20.1.2-0ubuntu1_arm64.deb ... 510s Unpacking libllvm20:arm64 (1:20.1.2-0ubuntu1) ... 511s Selecting previously unselected package libmaeparser1:arm64. 511s Preparing to unpack .../29-libmaeparser1_1.3.1-1build1_arm64.deb ... 511s Unpacking libmaeparser1:arm64 (1.3.1-1build1) ... 511s Selecting previously unselected package libpq5:arm64. 511s Preparing to unpack .../30-libpq5_17.4-1_arm64.deb ... 511s Unpacking libpq5:arm64 (17.4-1) ... 511s Selecting previously unselected package librdkit1t64. 511s Preparing to unpack .../31-librdkit1t64_202409.6-2_arm64.deb ... 511s Unpacking librdkit1t64 (202409.6-2) ... 511s Selecting previously unselected package librdkit-dev. 511s Preparing to unpack .../32-librdkit-dev_202409.6-2_arm64.deb ... 511s Unpacking librdkit-dev (202409.6-2) ... 511s Selecting previously unselected package libxslt1.1:arm64. 511s Preparing to unpack .../33-libxslt1.1_1.1.39-0exp1ubuntu4_arm64.deb ... 511s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu4) ... 511s Selecting previously unselected package postgresql-client-17. 511s Preparing to unpack .../34-postgresql-client-17_17.4-1_arm64.deb ... 511s Unpacking postgresql-client-17 (17.4-1) ... 511s Selecting previously unselected package postgresql-17. 511s Preparing to unpack .../35-postgresql-17_17.4-1_arm64.deb ... 511s Unpacking postgresql-17 (17.4-1) ... 512s Selecting previously unselected package postgresql-17-rdkit. 512s Preparing to unpack .../36-postgresql-17-rdkit_202409.6-2_arm64.deb ... 512s Unpacking postgresql-17-rdkit (202409.6-2) ... 512s Selecting previously unselected package rdkit-data. 512s Preparing to unpack .../37-rdkit-data_202409.6-2_all.deb ... 512s Unpacking rdkit-data (202409.6-2) ... 512s Selecting previously unselected package python3-rdkit. 512s Preparing to unpack .../38-python3-rdkit_202409.6-2_arm64.deb ... 512s Unpacking python3-rdkit (202409.6-2) ... 512s Selecting previously unselected package rdkit-doc. 512s Preparing to unpack .../39-rdkit-doc_202409.6-2_all.deb ... 512s Unpacking rdkit-doc (202409.6-2) ... 513s Setting up postgresql-client-common (274) ... 513s Setting up libboost-python1.83.0 (1.83.0-4.2ubuntu1) ... 513s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 513s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 513s Setting up libio-pty-perl (1:1.20-1build3) ... 513s Setting up libxcb-render0:arm64 (1.17.0-2) ... 513s Setting up libpq5:arm64 (17.4-1) ... 513s Setting up fonts-freefont-ttf (20211204+svn4273-2) ... 513s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 513s Setting up rdkit-data (202409.6-2) ... 513s Setting up libboost-serialization1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 513s Setting up libboost-numpy1.83.0 (1.83.0-4.2ubuntu1) ... 513s Setting up libblas3:arm64 (3.12.1-2) ... 513s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 513s Setting up ssl-cert (1.1.3ubuntu1) ... 514s Created symlink '/etc/systemd/system/multi-user.target.wants/ssl-cert.service' → '/usr/lib/systemd/system/ssl-cert.service'. 514s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 514s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 514s Setting up libllvm20:arm64 (1:20.1.2-0ubuntu1) ... 514s Setting up libipc-run-perl (20231003.0-2) ... 514s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 514s Setting up libjson-perl (4.10000-1) ... 514s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu4) ... 514s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 514s Setting up libcoordgen3:arm64 (3.0.2-1) ... 514s Setting up libinchi1.07 (1.07.3+dfsg-1) ... 514s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 514s Setting up postgresql-common-dev (274) ... 514s Setting up liblapack3:arm64 (3.12.1-2) ... 514s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 514s Setting up postgresql-client-17 (17.4-1) ... 515s update-alternatives: using /usr/share/postgresql/17/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode 515s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 515s Setting up rdkit-doc (202409.6-2) ... 515s Setting up libmaeparser1:arm64 (1.3.1-1build1) ... 515s Setting up postgresql-common (274) ... 516s Creating config file /etc/postgresql-common/createcluster.conf with new version 516s Building PostgreSQL dictionaries from installed myspell/hunspell packages... 516s Removing obsolete dictionary files: 517s Created symlink '/etc/systemd/system/multi-user.target.wants/postgresql.service' → '/usr/lib/systemd/system/postgresql.service'. 517s Setting up python3-numpy (1:2.2.3+ds-5) ... 519s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 519s Setting up postgresql-17 (17.4-1) ... 520s Creating new PostgreSQL cluster 17/main ... 520s /usr/lib/postgresql/17/bin/initdb -D /var/lib/postgresql/17/main --auth-local peer --auth-host scram-sha-256 --no-instructions 520s The files belonging to this database system will be owned by user "postgres". 520s This user must also own the server process. 520s 520s The database cluster will be initialized with locale "C.UTF-8". 520s The default database encoding has accordingly been set to "UTF8". 520s The default text search configuration will be set to "english". 520s 520s Data page checksums are disabled. 520s 520s fixing permissions on existing directory /var/lib/postgresql/17/main ... ok 520s creating subdirectories ... ok 520s selecting dynamic shared memory implementation ... posix 520s selecting default "max_connections" ... 100 520s selecting default "shared_buffers" ... 128MB 520s selecting default time zone ... Etc/UTC 520s creating configuration files ... ok 520s running bootstrap script ... ok 521s performing post-bootstrap initialization ... ok 521s syncing data to disk ... ok 524s Setting up libcairo2:arm64 (1.18.4-1) ... 524s Setting up librdkit1t64 (202409.6-2) ... 524s Setting up postgresql-17-rdkit (202409.6-2) ... 524s Setting up python3-rdkit (202409.6-2) ... 524s Setting up librdkit-dev (202409.6-2) ... 524s Processing triggers for man-db (2.13.0-1) ... 526s Processing triggers for libc-bin (2.41-6ubuntu1) ... 564s autopkgtest [00:55:18]: test importcheck: [----------------------- 565s autopkgtest [00:55:19]: test importcheck: -----------------------] 565s importcheck PASS 565s autopkgtest [00:55:19]: test importcheck: - - - - - - - - - - results - - - - - - - - - - 566s autopkgtest [00:55:20]: @@@@@@@@@@@@@@@@@@@@ summary 566s installcheck PASS 566s importcheck PASS 634s nova [W] Using flock in prodstack6-arm64 634s Creating nova instance adt-questing-arm64-rdkit-20250502-004554-juju-7f2275-prod-proposed-migration-environment-15-08c26371-690b-4d79-9f95-257cc5775718 from image adt/ubuntu-questing-arm64-server-20250501.img (UUID a16a0402-3b0c-4b8f-ba85-1dd4107760ca)... 634s nova [W] Timed out waiting for e4eb7562-51e3-471e-bc36-0acb805d0935 to get deleted. 634s nova [W] Using flock in prodstack6-arm64 634s Creating nova instance adt-questing-arm64-rdkit-20250502-004554-juju-7f2275-prod-proposed-migration-environment-15-08c26371-690b-4d79-9f95-257cc5775718 from image adt/ubuntu-questing-arm64-server-20250501.img (UUID a16a0402-3b0c-4b8f-ba85-1dd4107760ca)... 634s nova [W] Timed out waiting for f86994f0-5feb-44ef-806b-db29bc3e72e9 to get deleted.