0s autopkgtest [10:42:41]: starting date and time: 2025-05-02 10:42:41+0000 0s autopkgtest [10:42:41]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [10:42:41]: host juju-7f2275-prod-proposed-migration-environment-21; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.v5xkdjbs/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:nlme --apt-upgrade r-cran-epi --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=nlme/3.1.168-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu4-ram16-disk100-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-21@sto01-arm64-3.secgroup --name adt-questing-arm64-r-cran-epi-20250502-104241-juju-7f2275-prod-proposed-migration-environment-21-0f21d44a-b281-453f-b727-0a7a27c036c1 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-21 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 62s autopkgtest [10:43:43]: testbed dpkg architecture: arm64 62s autopkgtest [10:43:43]: testbed apt version: 3.0.0 63s autopkgtest [10:43:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s autopkgtest [10:43:44]: testbed release detected to be: None 63s autopkgtest [10:43:44]: updating testbed package index (apt update) 63s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 64s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 64s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 64s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 64s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB] 64s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB] 64s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 64s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [219 kB] 64s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1509 kB] 64s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 64s Fetched 4149 kB in 1s (5339 kB/s) 65s Reading package lists... 66s autopkgtest [10:43:47]: upgrading testbed (apt dist-upgrade and autopurge) 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 67s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 67s Entering ResolveByKeep 68s 68s Calculating upgrade... 68s The following packages will be upgraded: 68s htop libperl5.40 mtd-utils nano perl perl-base perl-modules-5.40 68s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 11.0 MB of archives. 68s After this operation, 727 kB of additional disk space will be used. 68s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libperl5.40 arm64 5.40.1-3 [4780 kB] 69s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl arm64 5.40.1-3 [262 kB] 69s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-base arm64 5.40.1-3 [1786 kB] 69s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 69s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 69s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 69s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 69s Fetched 11.0 MB in 0s (22.1 MB/s) 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 69s Preparing to unpack .../libperl5.40_5.40.1-3_arm64.deb ... 69s Unpacking libperl5.40:arm64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 70s Preparing to unpack .../perl_5.40.1-3_arm64.deb ... 70s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 70s Preparing to unpack .../perl-base_5.40.1-3_arm64.deb ... 70s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 70s Setting up perl-base (5.40.1-3) ... 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 70s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 70s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 70s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 70s Unpacking nano (8.4-1) over (8.3-1) ... 70s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 70s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 70s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 70s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 70s Setting up htop (3.4.1-4) ... 70s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 70s Setting up nano (8.4-1) ... 70s Installing new version of config file /etc/nanorc ... 70s Setting up perl-modules-5.40 (5.40.1-3) ... 70s Setting up libperl5.40:arm64 (5.40.1-3) ... 70s Setting up perl (5.40.1-3) ... 70s Processing triggers for libc-bin (2.41-6ubuntu1) ... 70s Processing triggers for man-db (2.13.0-1) ... 71s Processing triggers for install-info (7.1.1-1) ... 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 72s Starting pkgProblemResolver with broken count: 0 72s Starting 2 pkgProblemResolver with broken count: 0 72s Done 73s Solving dependencies... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s autopkgtest [10:43:56]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 75s autopkgtest [10:43:56]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-epi 77s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-cran-epi 2.59-1 (dsc) [2265 B] 77s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-cran-epi 2.59-1 (tar) [3198 kB] 77s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-cran-epi 2.59-1 (diff) [5404 B] 77s gpgv: Signature made Thu Jan 23 00:05:30 2025 UTC 77s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 77s gpgv: issuer "plessy@debian.org" 77s gpgv: Can't check signature: No public key 77s dpkg-source: warning: cannot verify inline signature for ./r-cran-epi_2.59-1.dsc: no acceptable signature found 77s autopkgtest [10:43:58]: testing package r-cran-epi version 2.59-1 77s autopkgtest [10:43:58]: build not needed 80s autopkgtest [10:44:01]: test vignette: preparing testbed 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 81s Starting pkgProblemResolver with broken count: 0 81s Starting 2 pkgProblemResolver with broken count: 0 81s Done 82s The following NEW packages will be installed: 82s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 82s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 82s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 82s liblapack3 liblerc4 libnlopt0 libpango-1.0-0 libpangocairo-1.0-0 82s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 82s libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 82s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler r-base-core 82s r-cran-boot r-cran-cli r-cran-cmprsk r-cran-cpp11 r-cran-data.table 82s r-cran-dplyr r-cran-epi r-cran-etm r-cran-fansi r-cran-generics r-cran-glue 82s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lme4 r-cran-magrittr 82s r-cran-mass r-cran-matrix r-cran-mgcv r-cran-minqa r-cran-nlme r-cran-nloptr 82s r-cran-numderiv r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr 82s r-cran-popepi r-cran-purrr r-cran-r6 r-cran-rbibutils r-cran-rcpp 82s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rdpack r-cran-reformulas 82s r-cran-rlang r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival 82s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs 82s r-cran-withr r-cran-zoo unzip x11-common xdg-utils zip 82s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 82s Need to get 91.3 MB of archives. 82s After this operation, 181 MB of additional disk space will be used. 82s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 82s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 82s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 82s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 82s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig arm64 2.15.0-2.2ubuntu1 [191 kB] 82s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 82s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 82s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 82s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 82s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 82s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 82s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 82s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 82s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 82s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 82s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 82s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 82s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 82s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 82s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 82s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 82s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 82s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 82s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 82s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 82s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 libpango-1.0-0 arm64 1.56.3-1 [238 kB] 82s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libpangoft2-1.0-0 arm64 1.56.3-1 [49.8 kB] 82s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 libpangocairo-1.0-0 arm64 1.56.3-1 [27.6 kB] 82s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 82s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 82s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 82s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 82s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 82s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 82s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 82s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 82s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 82s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 82s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 82s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 82s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 82s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 82s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 82s Get:44 http://ftpmaster.internal/ubuntu questing/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 82s Get:45 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 82s Get:46 http://ftpmaster.internal/ubuntu questing/universe arm64 littler all 0.3.20-2 [2554 B] 82s Get:47 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-boot all 1.3-31-1 [635 kB] 83s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 83s Get:49 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 83s Get:50 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 83s Get:51 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB] 83s Get:52 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cmprsk arm64 2.2-12-1 [104 kB] 83s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 83s Get:54 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-data.table arm64 1.17.0+dfsg-1 [2129 kB] 83s Get:55 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 83s Get:56 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 83s Get:57 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 83s Get:58 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 83s Get:59 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 83s Get:60 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 83s Get:61 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 83s Get:62 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 83s Get:63 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 83s Get:64 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-fansi arm64 1.0.6-1ubuntu1 [628 kB] 83s Get:65 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 83s Get:66 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 83s Get:67 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 83s Get:68 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 83s Get:69 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 83s Get:70 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 83s Get:71 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 83s Get:72 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rcpparmadillo arm64 14.4.0-1-1 [846 kB] 83s Get:73 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-etm arm64 1.1.1-1 [469 kB] 83s Get:74 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB] 83s Get:75 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 83s Get:76 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 83s Get:77 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-zoo arm64 1.8-13-1 [996 kB] 83s Get:78 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-nlme arm64 3.1.168-1 [2310 kB] 83s Get:79 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 84s Get:80 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-epi arm64 2.59-1 [3400 kB] 84s Get:81 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-minqa arm64 1.2.8-1 [112 kB] 84s Get:82 http://ftpmaster.internal/ubuntu questing/universe arm64 libnlopt0 arm64 2.7.1-6ubuntu3 [179 kB] 84s Get:83 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-nloptr arm64 2.2.1-1 [250 kB] 84s Get:84 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rbibutils arm64 2.3-1 [1016 kB] 84s Get:85 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rdpack all 2.6.3-1 [636 kB] 84s Get:86 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-reformulas all 0.4.0-1 [91.5 kB] 84s Get:87 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB] 84s Get:88 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 84s Get:89 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-lme4 arm64 1.1-36-1 [4108 kB] 84s Get:90 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-popepi all 0.4.13+dfsg-1 [1151 kB] 84s Get:91 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 84s Get:92 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 84s Get:93 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 84s Get:94 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 84s Preconfiguring packages ... 84s Fetched 91.3 MB in 2s (37.0 MB/s) 85s Selecting previously unselected package fonts-dejavu-mono. 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85225 files and directories currently installed.) 85s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 85s Unpacking fonts-dejavu-mono (2.37-8) ... 85s Selecting previously unselected package fonts-dejavu-core. 85s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 85s Unpacking fonts-dejavu-core (2.37-8) ... 85s Selecting previously unselected package fontconfig-config. 85s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 85s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 85s Selecting previously unselected package libfontconfig1:arm64. 85s Preparing to unpack .../03-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 85s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 85s Selecting previously unselected package fontconfig. 85s Preparing to unpack .../04-fontconfig_2.15.0-2.2ubuntu1_arm64.deb ... 85s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 85s Selecting previously unselected package libblas3:arm64. 85s Preparing to unpack .../05-libblas3_3.12.1-2_arm64.deb ... 85s Unpacking libblas3:arm64 (3.12.1-2) ... 85s Selecting previously unselected package libpixman-1-0:arm64. 85s Preparing to unpack .../06-libpixman-1-0_0.44.0-3_arm64.deb ... 85s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 85s Selecting previously unselected package libxcb-render0:arm64. 85s Preparing to unpack .../07-libxcb-render0_1.17.0-2_arm64.deb ... 85s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 85s Selecting previously unselected package libxcb-shm0:arm64. 85s Preparing to unpack .../08-libxcb-shm0_1.17.0-2_arm64.deb ... 85s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 85s Selecting previously unselected package libxrender1:arm64. 85s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 85s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 85s Selecting previously unselected package libcairo2:arm64. 85s Preparing to unpack .../10-libcairo2_1.18.4-1_arm64.deb ... 85s Unpacking libcairo2:arm64 (1.18.4-1) ... 85s Selecting previously unselected package libdatrie1:arm64. 85s Preparing to unpack .../11-libdatrie1_0.2.13-3build1_arm64.deb ... 85s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 85s Selecting previously unselected package libdeflate0:arm64. 85s Preparing to unpack .../12-libdeflate0_1.23-1_arm64.deb ... 85s Unpacking libdeflate0:arm64 (1.23-1) ... 85s Selecting previously unselected package libgfortran5:arm64. 85s Preparing to unpack .../13-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 85s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 85s Selecting previously unselected package libgomp1:arm64. 85s Preparing to unpack .../14-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 85s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 85s Selecting previously unselected package libgraphite2-3:arm64. 85s Preparing to unpack .../15-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 85s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 85s Selecting previously unselected package libharfbuzz0b:arm64. 85s Preparing to unpack .../16-libharfbuzz0b_10.2.0-1_arm64.deb ... 85s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 85s Selecting previously unselected package x11-common. 85s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu4_all.deb ... 85s Unpacking x11-common (1:7.7+23ubuntu4) ... 85s Selecting previously unselected package libice6:arm64. 85s Preparing to unpack .../18-libice6_2%3a1.1.1-1_arm64.deb ... 85s Unpacking libice6:arm64 (2:1.1.1-1) ... 85s Selecting previously unselected package libjpeg-turbo8:arm64. 85s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 85s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 85s Selecting previously unselected package libjpeg8:arm64. 85s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ... 85s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 85s Selecting previously unselected package liblapack3:arm64. 85s Preparing to unpack .../21-liblapack3_3.12.1-2_arm64.deb ... 85s Unpacking liblapack3:arm64 (3.12.1-2) ... 86s Selecting previously unselected package liblerc4:arm64. 86s Preparing to unpack .../22-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 86s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 86s Selecting previously unselected package libthai-data. 86s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ... 86s Unpacking libthai-data (0.1.29-2build1) ... 86s Selecting previously unselected package libthai0:arm64. 86s Preparing to unpack .../24-libthai0_0.1.29-2build1_arm64.deb ... 86s Unpacking libthai0:arm64 (0.1.29-2build1) ... 86s Selecting previously unselected package libpango-1.0-0:arm64. 86s Preparing to unpack .../25-libpango-1.0-0_1.56.3-1_arm64.deb ... 86s Unpacking libpango-1.0-0:arm64 (1.56.3-1) ... 86s Selecting previously unselected package libpangoft2-1.0-0:arm64. 86s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.3-1_arm64.deb ... 86s Unpacking libpangoft2-1.0-0:arm64 (1.56.3-1) ... 86s Selecting previously unselected package libpangocairo-1.0-0:arm64. 86s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.3-1_arm64.deb ... 86s Unpacking libpangocairo-1.0-0:arm64 (1.56.3-1) ... 86s Selecting previously unselected package libpaper2:arm64. 86s Preparing to unpack .../28-libpaper2_2.2.5-0.3_arm64.deb ... 86s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 86s Selecting previously unselected package libpaper-utils. 86s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3_arm64.deb ... 86s Unpacking libpaper-utils (2.2.5-0.3) ... 86s Selecting previously unselected package libsharpyuv0:arm64. 86s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_arm64.deb ... 86s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 86s Selecting previously unselected package libsm6:arm64. 86s Preparing to unpack .../31-libsm6_2%3a1.2.4-1_arm64.deb ... 86s Unpacking libsm6:arm64 (2:1.2.4-1) ... 86s Selecting previously unselected package libtcl8.6:arm64. 86s Preparing to unpack .../32-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 86s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 86s Selecting previously unselected package libjbig0:arm64. 86s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 86s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 86s Selecting previously unselected package libwebp7:arm64. 86s Preparing to unpack .../34-libwebp7_1.5.0-0.1_arm64.deb ... 86s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 86s Selecting previously unselected package libtiff6:arm64. 86s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 86s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 86s Selecting previously unselected package libxft2:arm64. 86s Preparing to unpack .../36-libxft2_2.3.6-1build1_arm64.deb ... 86s Unpacking libxft2:arm64 (2.3.6-1build1) ... 86s Selecting previously unselected package libxss1:arm64. 86s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build3_arm64.deb ... 86s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 86s Selecting previously unselected package libtk8.6:arm64. 86s Preparing to unpack .../38-libtk8.6_8.6.16-1_arm64.deb ... 86s Unpacking libtk8.6:arm64 (8.6.16-1) ... 86s Selecting previously unselected package libxt6t64:arm64. 86s Preparing to unpack .../39-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 86s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 86s Selecting previously unselected package zip. 86s Preparing to unpack .../40-zip_3.0-14ubuntu2_arm64.deb ... 86s Unpacking zip (3.0-14ubuntu2) ... 86s Selecting previously unselected package unzip. 86s Preparing to unpack .../41-unzip_6.0-28ubuntu6_arm64.deb ... 86s Unpacking unzip (6.0-28ubuntu6) ... 86s Selecting previously unselected package xdg-utils. 86s Preparing to unpack .../42-xdg-utils_1.2.1-2ubuntu1_all.deb ... 86s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 86s Selecting previously unselected package r-base-core. 86s Preparing to unpack .../43-r-base-core_4.4.3-1_arm64.deb ... 86s Unpacking r-base-core (4.4.3-1) ... 87s Selecting previously unselected package r-cran-littler. 87s Preparing to unpack .../44-r-cran-littler_0.3.20-2_arm64.deb ... 87s Unpacking r-cran-littler (0.3.20-2) ... 87s Selecting previously unselected package littler. 87s Preparing to unpack .../45-littler_0.3.20-2_all.deb ... 87s Unpacking littler (0.3.20-2) ... 87s Selecting previously unselected package r-cran-boot. 87s Preparing to unpack .../46-r-cran-boot_1.3-31-1_all.deb ... 87s Unpacking r-cran-boot (1.3-31-1) ... 87s Selecting previously unselected package r-cran-cli. 87s Preparing to unpack .../47-r-cran-cli_3.6.4-1_arm64.deb ... 87s Unpacking r-cran-cli (3.6.4-1) ... 87s Selecting previously unselected package r-cran-lattice. 87s Preparing to unpack .../48-r-cran-lattice_0.22-6-1_arm64.deb ... 87s Unpacking r-cran-lattice (0.22-6-1) ... 87s Selecting previously unselected package r-cran-matrix. 87s Preparing to unpack .../49-r-cran-matrix_1.7-3-1_arm64.deb ... 87s Unpacking r-cran-matrix (1.7-3-1) ... 87s Selecting previously unselected package r-cran-survival. 87s Preparing to unpack .../50-r-cran-survival_3.8-3-1_arm64.deb ... 87s Unpacking r-cran-survival (3.8-3-1) ... 87s Selecting previously unselected package r-cran-cmprsk. 87s Preparing to unpack .../51-r-cran-cmprsk_2.2-12-1_arm64.deb ... 87s Unpacking r-cran-cmprsk (2.2-12-1) ... 87s Selecting previously unselected package r-cran-cpp11. 87s Preparing to unpack .../52-r-cran-cpp11_0.5.2-1_all.deb ... 87s Unpacking r-cran-cpp11 (0.5.2-1) ... 87s Selecting previously unselected package r-cran-data.table. 87s Preparing to unpack .../53-r-cran-data.table_1.17.0+dfsg-1_arm64.deb ... 87s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 87s Selecting previously unselected package r-cran-generics. 87s Preparing to unpack .../54-r-cran-generics_0.1.3-1_all.deb ... 87s Unpacking r-cran-generics (0.1.3-1) ... 87s Selecting previously unselected package r-cran-glue. 87s Preparing to unpack .../55-r-cran-glue_1.8.0-1_arm64.deb ... 87s Unpacking r-cran-glue (1.8.0-1) ... 87s Selecting previously unselected package r-cran-rlang. 87s Preparing to unpack .../56-r-cran-rlang_1.1.5-1_arm64.deb ... 87s Unpacking r-cran-rlang (1.1.5-1) ... 87s Selecting previously unselected package r-cran-lifecycle. 87s Preparing to unpack .../57-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 87s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 87s Selecting previously unselected package r-cran-magrittr. 87s Preparing to unpack .../58-r-cran-magrittr_2.0.3-1_arm64.deb ... 87s Unpacking r-cran-magrittr (2.0.3-1) ... 87s Selecting previously unselected package r-cran-utf8. 87s Preparing to unpack .../59-r-cran-utf8_1.2.4-1_arm64.deb ... 87s Unpacking r-cran-utf8 (1.2.4-1) ... 87s Selecting previously unselected package r-cran-vctrs. 87s Preparing to unpack .../60-r-cran-vctrs_0.6.5-1_arm64.deb ... 87s Unpacking r-cran-vctrs (0.6.5-1) ... 87s Selecting previously unselected package r-cran-pillar. 87s Preparing to unpack .../61-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 87s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 87s Selecting previously unselected package r-cran-r6. 87s Preparing to unpack .../62-r-cran-r6_2.6.1-1_all.deb ... 87s Unpacking r-cran-r6 (2.6.1-1) ... 87s Selecting previously unselected package r-cran-fansi. 87s Preparing to unpack .../63-r-cran-fansi_1.0.6-1ubuntu1_arm64.deb ... 87s Unpacking r-cran-fansi (1.0.6-1ubuntu1) ... 87s Selecting previously unselected package r-cran-pkgconfig. 88s Preparing to unpack .../64-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 88s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 88s Selecting previously unselected package r-cran-tibble. 88s Preparing to unpack .../65-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 88s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 88s Selecting previously unselected package r-cran-withr. 88s Preparing to unpack .../66-r-cran-withr_3.0.2+dfsg-1_all.deb ... 88s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 88s Selecting previously unselected package r-cran-tidyselect. 88s Preparing to unpack .../67-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 88s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 88s Selecting previously unselected package r-cran-dplyr. 88s Preparing to unpack .../68-r-cran-dplyr_1.1.4-4_arm64.deb ... 88s Unpacking r-cran-dplyr (1.1.4-4) ... 88s Selecting previously unselected package r-cran-pkgkitten. 88s Preparing to unpack .../69-r-cran-pkgkitten_0.2.4-1_all.deb ... 88s Unpacking r-cran-pkgkitten (0.2.4-1) ... 88s Selecting previously unselected package r-cran-rcpp. 88s Preparing to unpack .../70-r-cran-rcpp_1.0.14-1_arm64.deb ... 88s Unpacking r-cran-rcpp (1.0.14-1) ... 88s Selecting previously unselected package r-cran-rcpparmadillo. 88s Preparing to unpack .../71-r-cran-rcpparmadillo_14.4.0-1-1_arm64.deb ... 88s Unpacking r-cran-rcpparmadillo (14.4.0-1-1) ... 88s Selecting previously unselected package r-cran-etm. 88s Preparing to unpack .../72-r-cran-etm_1.1.1-1_arm64.deb ... 88s Unpacking r-cran-etm (1.1.1-1) ... 88s Selecting previously unselected package r-cran-mass. 88s Preparing to unpack .../73-r-cran-mass_7.3-65-1_arm64.deb ... 88s Unpacking r-cran-mass (7.3-65-1) ... 88s Selecting previously unselected package r-cran-plyr. 88s Preparing to unpack .../74-r-cran-plyr_1.8.9-1_arm64.deb ... 88s Unpacking r-cran-plyr (1.8.9-1) ... 88s Selecting previously unselected package r-cran-numderiv. 88s Preparing to unpack .../75-r-cran-numderiv_2016.8-1.1-3_all.deb ... 88s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 88s Selecting previously unselected package r-cran-zoo. 88s Preparing to unpack .../76-r-cran-zoo_1.8-13-1_arm64.deb ... 88s Unpacking r-cran-zoo (1.8-13-1) ... 88s Selecting previously unselected package r-cran-nlme. 88s Preparing to unpack .../77-r-cran-nlme_3.1.168-1_arm64.deb ... 88s Unpacking r-cran-nlme (3.1.168-1) ... 88s Selecting previously unselected package r-cran-mgcv. 88s Preparing to unpack .../78-r-cran-mgcv_1.9-1-1_arm64.deb ... 88s Unpacking r-cran-mgcv (1.9-1-1) ... 88s Selecting previously unselected package r-cran-epi. 88s Preparing to unpack .../79-r-cran-epi_2.59-1_arm64.deb ... 88s Unpacking r-cran-epi (2.59-1) ... 88s Selecting previously unselected package r-cran-minqa. 88s Preparing to unpack .../80-r-cran-minqa_1.2.8-1_arm64.deb ... 88s Unpacking r-cran-minqa (1.2.8-1) ... 88s Selecting previously unselected package libnlopt0:arm64. 88s Preparing to unpack .../81-libnlopt0_2.7.1-6ubuntu3_arm64.deb ... 88s Unpacking libnlopt0:arm64 (2.7.1-6ubuntu3) ... 88s Selecting previously unselected package r-cran-nloptr. 88s Preparing to unpack .../82-r-cran-nloptr_2.2.1-1_arm64.deb ... 88s Unpacking r-cran-nloptr (2.2.1-1) ... 88s Selecting previously unselected package r-cran-rbibutils. 88s Preparing to unpack .../83-r-cran-rbibutils_2.3-1_arm64.deb ... 88s Unpacking r-cran-rbibutils (2.3-1) ... 88s Selecting previously unselected package r-cran-rdpack. 88s Preparing to unpack .../84-r-cran-rdpack_2.6.3-1_all.deb ... 88s Unpacking r-cran-rdpack (2.6.3-1) ... 88s Selecting previously unselected package r-cran-reformulas. 88s Preparing to unpack .../85-r-cran-reformulas_0.4.0-1_all.deb ... 88s Unpacking r-cran-reformulas (0.4.0-1) ... 89s Selecting previously unselected package r-cran-rcppeigen. 89s Preparing to unpack .../86-r-cran-rcppeigen_0.3.4.0.2-1_arm64.deb ... 89s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 89s Selecting previously unselected package r-cran-statmod. 89s Preparing to unpack .../87-r-cran-statmod_1.5.0-1_arm64.deb ... 89s Unpacking r-cran-statmod (1.5.0-1) ... 89s Selecting previously unselected package r-cran-lme4. 89s Preparing to unpack .../88-r-cran-lme4_1.1-36-1_arm64.deb ... 89s Unpacking r-cran-lme4 (1.1-36-1) ... 89s Selecting previously unselected package r-cran-popepi. 89s Preparing to unpack .../89-r-cran-popepi_0.4.13+dfsg-1_all.deb ... 89s Unpacking r-cran-popepi (0.4.13+dfsg-1) ... 89s Selecting previously unselected package r-cran-purrr. 89s Preparing to unpack .../90-r-cran-purrr_1.0.4-1_arm64.deb ... 89s Unpacking r-cran-purrr (1.0.4-1) ... 89s Selecting previously unselected package r-cran-stringi. 89s Preparing to unpack .../91-r-cran-stringi_1.8.4-1build1_arm64.deb ... 89s Unpacking r-cran-stringi (1.8.4-1build1) ... 89s Selecting previously unselected package r-cran-stringr. 89s Preparing to unpack .../92-r-cran-stringr_1.5.1-1_all.deb ... 89s Unpacking r-cran-stringr (1.5.1-1) ... 89s Selecting previously unselected package r-cran-tidyr. 89s Preparing to unpack .../93-r-cran-tidyr_1.3.1-1_arm64.deb ... 89s Unpacking r-cran-tidyr (1.3.1-1) ... 89s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 89s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 89s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 89s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 89s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 89s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 89s Setting up libxcb-render0:arm64 (1.17.0-2) ... 89s Setting up unzip (6.0-28ubuntu6) ... 89s Setting up x11-common (1:7.7+23ubuntu4) ... 89s Setting up libdeflate0:arm64 (1.23-1) ... 89s Setting up libnlopt0:arm64 (2.7.1-6ubuntu3) ... 89s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 89s Setting up libgomp1:arm64 (15-20250404-0ubuntu1) ... 89s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 89s Setting up zip (3.0-14ubuntu2) ... 89s Setting up libblas3:arm64 (3.12.1-2) ... 89s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 89s Setting up fonts-dejavu-mono (2.37-8) ... 89s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 89s Setting up fonts-dejavu-core (2.37-8) ... 89s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 89s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 89s Setting up libwebp7:arm64 (1.5.0-0.1) ... 89s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 89s Setting up libthai-data (0.1.29-2build1) ... 89s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 89s Setting up libpaper2:arm64 (2.2.5-0.3) ... 89s Setting up xdg-utils (1.2.1-2ubuntu1) ... 89s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 89s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 89s Setting up libice6:arm64 (2:1.1.1-1) ... 89s Setting up liblapack3:arm64 (3.12.1-2) ... 89s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 89s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 90s Setting up libpaper-utils (2.2.5-0.3) ... 90s Setting up libthai0:arm64 (0.1.29-2build1) ... 90s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 90s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 90s Setting up libsm6:arm64 (2:1.2.4-1) ... 90s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 92s Regenerating fonts cache... done. 92s Setting up libxft2:arm64 (2.3.6-1build1) ... 92s Setting up libtk8.6:arm64 (8.6.16-1) ... 92s Setting up libpango-1.0-0:arm64 (1.56.3-1) ... 92s Setting up libcairo2:arm64 (1.18.4-1) ... 92s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 92s Setting up libpangoft2-1.0-0:arm64 (1.56.3-1) ... 92s Setting up libpangocairo-1.0-0:arm64 (1.56.3-1) ... 92s Setting up r-base-core (4.4.3-1) ... 92s Creating config file /etc/R/Renviron with new version 92s Setting up r-cran-lattice (0.22-6-1) ... 92s Setting up r-cran-nlme (3.1.168-1) ... 92s Setting up r-cran-statmod (1.5.0-1) ... 92s Setting up r-cran-r6 (2.6.1-1) ... 92s Setting up r-cran-pkgkitten (0.2.4-1) ... 92s Setting up r-cran-numderiv (2016.8-1.1-3) ... 92s Setting up r-cran-magrittr (2.0.3-1) ... 92s Setting up r-cran-littler (0.3.20-2) ... 92s Setting up r-cran-rcpp (1.0.14-1) ... 92s Setting up r-cran-nloptr (2.2.1-1) ... 92s Setting up r-cran-boot (1.3-31-1) ... 92s Setting up r-cran-rlang (1.1.5-1) ... 92s Setting up littler (0.3.20-2) ... 92s Setting up r-cran-withr (3.0.2+dfsg-1) ... 92s Setting up r-cran-generics (0.1.3-1) ... 92s Setting up r-cran-fansi (1.0.6-1ubuntu1) ... 92s Setting up r-cran-mass (7.3-65-1) ... 92s Setting up r-cran-data.table (1.17.0+dfsg-1) ... 92s Setting up r-cran-glue (1.8.0-1) ... 92s Setting up r-cran-cli (3.6.4-1) ... 92s Setting up r-cran-rbibutils (2.3-1) ... 92s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 92s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 92s Setting up r-cran-utf8 (1.2.4-1) ... 92s Setting up r-cran-stringi (1.8.4-1build1) ... 92s Setting up r-cran-cpp11 (0.5.2-1) ... 92s Setting up r-cran-plyr (1.8.9-1) ... 92s Setting up r-cran-zoo (1.8-13-1) ... 92s Setting up r-cran-matrix (1.7-3-1) ... 92s Setting up r-cran-mgcv (1.9-1-1) ... 92s Setting up r-cran-rcpparmadillo (14.4.0-1-1) ... 92s Setting up r-cran-vctrs (0.6.5-1) ... 92s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 92s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 92s Setting up r-cran-minqa (1.2.8-1) ... 92s Setting up r-cran-stringr (1.5.1-1) ... 92s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 92s Setting up r-cran-survival (3.8-3-1) ... 92s Setting up r-cran-rdpack (2.6.3-1) ... 92s Setting up r-cran-cmprsk (2.2-12-1) ... 92s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 92s Setting up r-cran-purrr (1.0.4-1) ... 92s Setting up r-cran-dplyr (1.1.4-4) ... 92s Setting up r-cran-reformulas (0.4.0-1) ... 92s Setting up r-cran-etm (1.1.1-1) ... 92s Setting up r-cran-lme4 (1.1-36-1) ... 92s Setting up r-cran-tidyr (1.3.1-1) ... 92s Setting up r-cran-epi (2.59-1) ... 92s Setting up r-cran-popepi (0.4.13+dfsg-1) ... 92s Processing triggers for libc-bin (2.41-6ubuntu1) ... 92s Processing triggers for man-db (2.13.0-1) ... 92s Processing triggers for install-info (7.1.1-1) ... 93s autopkgtest [10:44:14]: test vignette: [----------------------- 93s BEGIN VIGNETTE vignettes/simLexis.rnw 95s 95s Attaching package: ‘survival’ 95s 95s The following object is masked from ‘package:popEpi’: 95s 95s Surv 95s 115s Output file: simLexis.tex 115s BEGIN VIGNETTE vignettes/crisk.rnw 116s 116s Attaching package: ‘survival’ 116s 116s The following object is masked from ‘package:popEpi’: 116s 116s Surv 116s 182s Output file: crisk.tex 182s BEGIN VIGNETTE vignettes/addLexis.rnw 183s 183s Attaching package: ‘dplyr’ 183s 183s The following objects are masked from ‘package:stats’: 183s 183s filter, lag 183s 183s The following objects are masked from ‘package:base’: 183s 183s intersect, setdiff, setequal, union 183s 186s Joining with `by = join_by(lex.id)` 186s Joining with `by = join_by(lex.id)` 186s Joining with `by = join_by(lex.id)` 211s Output file: addLexis.tex 211s BEGIN VIGNETTE vignettes/aaflup.rnw 213s 213s Attaching package: ‘survival’ 213s 213s The following object is masked from ‘package:popEpi’: 213s 213s Surv 213s 242s Output file: aaflup.tex 242s BEGIN VIGNETTE vignettes/yll.rnw 243s 243s Attaching package: ‘survival’ 243s 243s The following object is masked from ‘package:popEpi’: 243s 243s Surv 243s 260s Output file: yll.tex 260s autopkgtest [10:47:01]: test vignette: -----------------------] 261s vignette PASS 261s autopkgtest [10:47:02]: test vignette: - - - - - - - - - - results - - - - - - - - - - 261s autopkgtest [10:47:02]: test pkg-r-autopkgtest: preparing testbed 261s Reading package lists... 262s Building dependency tree... 262s Reading state information... 262s Starting pkgProblemResolver with broken count: 0 262s Starting 2 pkgProblemResolver with broken count: 0 262s Done 263s The following NEW packages will be installed: 263s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 263s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 263s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 263s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 263s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 263s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 263s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 263s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 263s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 263s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 263s zlib1g-dev 263s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 263s Need to get 92.7 MB of archives. 263s After this operation, 334 MB of additional disk space will be used. 263s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB] 263s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 263s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [10.6 MB] 263s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14 arm64 14.2.0-19ubuntu2 [1026 B] 263s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 263s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 263s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 libcc1-0 arm64 15-20250404-0ubuntu1 [49.1 kB] 263s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 libitm1 arm64 15-20250404-0ubuntu1 [27.8 kB] 263s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libasan8 arm64 15-20250404-0ubuntu1 [2922 kB] 263s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 liblsan0 arm64 15-20250404-0ubuntu1 [1318 kB] 263s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 libtsan2 arm64 15-20250404-0ubuntu1 [2692 kB] 263s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libubsan1 arm64 15-20250404-0ubuntu1 [1177 kB] 264s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libhwasan0 arm64 15-20250404-0ubuntu1 [1640 kB] 264s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libgcc-14-dev arm64 14.2.0-19ubuntu2 [2593 kB] 264s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [20.9 MB] 264s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14 arm64 14.2.0-19ubuntu2 [529 kB] 264s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 264s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 264s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libstdc++-14-dev arm64 14.2.0-19ubuntu2 [2501 kB] 264s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [12.1 MB] 264s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 g++-14 arm64 14.2.0-19ubuntu2 [23.0 kB] 264s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 264s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 264s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 build-essential arm64 12.12ubuntu1 [5082 B] 264s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 264s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran-14-dev arm64 14.2.0-19ubuntu2 [498 kB] 264s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [11.4 MB] 264s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14 arm64 14.2.0-19ubuntu2 [14.2 kB] 264s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 264s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 264s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 264s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 264s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 264s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 264s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 265s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 265s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 265s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 265s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 265s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 265s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 265s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 265s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 265s Get:44 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 265s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 265s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 265s Get:47 http://ftpmaster.internal/ubuntu questing/main arm64 libpng-dev arm64 1.6.47-1.1 [269 kB] 265s Get:48 http://ftpmaster.internal/ubuntu questing/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 265s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 liblzma-dev arm64 5.6.4-1ubuntu1 [180 kB] 265s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 265s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 265s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 265s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 265s Get:54 http://ftpmaster.internal/ubuntu questing/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 265s Fetched 92.7 MB in 2s (47.2 MB/s) 265s Selecting previously unselected package libisl23:arm64. 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 93760 files and directories currently installed.) 265s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 265s Unpacking libisl23:arm64 (0.27-1) ... 265s Selecting previously unselected package libmpc3:arm64. 265s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 265s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 265s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 265s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 265s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 265s Selecting previously unselected package cpp-14. 265s Preparing to unpack .../03-cpp-14_14.2.0-19ubuntu2_arm64.deb ... 265s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 265s Selecting previously unselected package cpp-aarch64-linux-gnu. 265s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 265s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 265s Selecting previously unselected package cpp. 266s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 266s Unpacking cpp (4:14.2.0-1ubuntu1) ... 266s Selecting previously unselected package libcc1-0:arm64. 266s Preparing to unpack .../06-libcc1-0_15-20250404-0ubuntu1_arm64.deb ... 266s Unpacking libcc1-0:arm64 (15-20250404-0ubuntu1) ... 266s Selecting previously unselected package libitm1:arm64. 266s Preparing to unpack .../07-libitm1_15-20250404-0ubuntu1_arm64.deb ... 266s Unpacking libitm1:arm64 (15-20250404-0ubuntu1) ... 266s Selecting previously unselected package libasan8:arm64. 266s Preparing to unpack .../08-libasan8_15-20250404-0ubuntu1_arm64.deb ... 266s Unpacking libasan8:arm64 (15-20250404-0ubuntu1) ... 266s Selecting previously unselected package liblsan0:arm64. 266s Preparing to unpack .../09-liblsan0_15-20250404-0ubuntu1_arm64.deb ... 266s Unpacking liblsan0:arm64 (15-20250404-0ubuntu1) ... 266s Selecting previously unselected package libtsan2:arm64. 266s Preparing to unpack .../10-libtsan2_15-20250404-0ubuntu1_arm64.deb ... 266s Unpacking libtsan2:arm64 (15-20250404-0ubuntu1) ... 266s Selecting previously unselected package libubsan1:arm64. 266s Preparing to unpack .../11-libubsan1_15-20250404-0ubuntu1_arm64.deb ... 266s Unpacking libubsan1:arm64 (15-20250404-0ubuntu1) ... 266s Selecting previously unselected package libhwasan0:arm64. 266s Preparing to unpack .../12-libhwasan0_15-20250404-0ubuntu1_arm64.deb ... 266s Unpacking libhwasan0:arm64 (15-20250404-0ubuntu1) ... 266s Selecting previously unselected package libgcc-14-dev:arm64. 266s Preparing to unpack .../13-libgcc-14-dev_14.2.0-19ubuntu2_arm64.deb ... 266s Unpacking libgcc-14-dev:arm64 (14.2.0-19ubuntu2) ... 266s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 266s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 266s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 266s Selecting previously unselected package gcc-14. 266s Preparing to unpack .../15-gcc-14_14.2.0-19ubuntu2_arm64.deb ... 266s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 266s Selecting previously unselected package gcc-aarch64-linux-gnu. 266s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 266s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 266s Selecting previously unselected package gcc. 267s Preparing to unpack .../17-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 267s Unpacking gcc (4:14.2.0-1ubuntu1) ... 267s Selecting previously unselected package libstdc++-14-dev:arm64. 267s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-19ubuntu2_arm64.deb ... 267s Unpacking libstdc++-14-dev:arm64 (14.2.0-19ubuntu2) ... 267s Selecting previously unselected package g++-14-aarch64-linux-gnu. 267s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 267s Unpacking g++-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 267s Selecting previously unselected package g++-14. 267s Preparing to unpack .../20-g++-14_14.2.0-19ubuntu2_arm64.deb ... 267s Unpacking g++-14 (14.2.0-19ubuntu2) ... 267s Selecting previously unselected package g++-aarch64-linux-gnu. 267s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 267s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 267s Selecting previously unselected package g++. 267s Preparing to unpack .../22-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 267s Unpacking g++ (4:14.2.0-1ubuntu1) ... 267s Selecting previously unselected package build-essential. 267s Preparing to unpack .../23-build-essential_12.12ubuntu1_arm64.deb ... 267s Unpacking build-essential (12.12ubuntu1) ... 267s Selecting previously unselected package dctrl-tools. 267s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 267s Unpacking dctrl-tools (2.24-3build3) ... 267s Selecting previously unselected package libgfortran-14-dev:arm64. 267s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-19ubuntu2_arm64.deb ... 267s Unpacking libgfortran-14-dev:arm64 (14.2.0-19ubuntu2) ... 267s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 267s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 267s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 267s Selecting previously unselected package gfortran-14. 267s Preparing to unpack .../27-gfortran-14_14.2.0-19ubuntu2_arm64.deb ... 267s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 267s Selecting previously unselected package gfortran-aarch64-linux-gnu. 267s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 267s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 267s Selecting previously unselected package gfortran. 267s Preparing to unpack .../29-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 267s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 267s Selecting previously unselected package icu-devtools. 267s Preparing to unpack .../30-icu-devtools_76.1-1ubuntu2_arm64.deb ... 267s Unpacking icu-devtools (76.1-1ubuntu2) ... 267s Selecting previously unselected package libblas-dev:arm64. 268s Preparing to unpack .../31-libblas-dev_3.12.1-2_arm64.deb ... 268s Unpacking libblas-dev:arm64 (3.12.1-2) ... 268s Selecting previously unselected package libbz2-dev:arm64. 268s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ... 268s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 268s Selecting previously unselected package libdeflate-dev:arm64. 268s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ... 268s Unpacking libdeflate-dev:arm64 (1.23-1) ... 268s Selecting previously unselected package libicu-dev:arm64. 268s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ... 268s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 268s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 268s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 268s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 268s Selecting previously unselected package libjpeg8-dev:arm64. 268s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 268s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 268s Selecting previously unselected package libjpeg-dev:arm64. 268s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 268s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 268s Selecting previously unselected package liblapack-dev:arm64. 268s Preparing to unpack .../38-liblapack-dev_3.12.1-2_arm64.deb ... 268s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 268s Selecting previously unselected package libncurses-dev:arm64. 268s Preparing to unpack .../39-libncurses-dev_6.5+20250216-2_arm64.deb ... 268s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 268s Selecting previously unselected package libpcre2-16-0:arm64. 268s Preparing to unpack .../40-libpcre2-16-0_10.45-1_arm64.deb ... 268s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 268s Selecting previously unselected package libpcre2-32-0:arm64. 268s Preparing to unpack .../41-libpcre2-32-0_10.45-1_arm64.deb ... 268s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 268s Selecting previously unselected package libpcre2-posix3:arm64. 268s Preparing to unpack .../42-libpcre2-posix3_10.45-1_arm64.deb ... 268s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 268s Selecting previously unselected package libpcre2-dev:arm64. 268s Preparing to unpack .../43-libpcre2-dev_10.45-1_arm64.deb ... 268s Unpacking libpcre2-dev:arm64 (10.45-1) ... 268s Selecting previously unselected package libpkgconf3:arm64. 268s Preparing to unpack .../44-libpkgconf3_1.8.1-4_arm64.deb ... 268s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 268s Selecting previously unselected package zlib1g-dev:arm64. 268s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 268s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 268s Selecting previously unselected package libpng-dev:arm64. 268s Preparing to unpack .../46-libpng-dev_1.6.47-1.1_arm64.deb ... 268s Unpacking libpng-dev:arm64 (1.6.47-1.1) ... 268s Selecting previously unselected package libreadline-dev:arm64. 268s Preparing to unpack .../47-libreadline-dev_8.2-6_arm64.deb ... 268s Unpacking libreadline-dev:arm64 (8.2-6) ... 268s Selecting previously unselected package liblzma-dev:arm64. 268s Preparing to unpack .../48-liblzma-dev_5.6.4-1ubuntu1_arm64.deb ... 268s Unpacking liblzma-dev:arm64 (5.6.4-1ubuntu1) ... 269s Selecting previously unselected package pkgconf-bin. 269s Preparing to unpack .../49-pkgconf-bin_1.8.1-4_arm64.deb ... 269s Unpacking pkgconf-bin (1.8.1-4) ... 269s Selecting previously unselected package pkgconf:arm64. 269s Preparing to unpack .../50-pkgconf_1.8.1-4_arm64.deb ... 269s Unpacking pkgconf:arm64 (1.8.1-4) ... 269s Selecting previously unselected package libtirpc-dev:arm64. 269s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 269s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 269s Selecting previously unselected package r-base-dev. 269s Preparing to unpack .../52-r-base-dev_4.4.3-1_all.deb ... 269s Unpacking r-base-dev (4.4.3-1) ... 269s Selecting previously unselected package pkg-r-autopkgtest. 269s Preparing to unpack .../53-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 269s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 269s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 269s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 269s Setting up libreadline-dev:arm64 (8.2-6) ... 269s Setting up libpcre2-16-0:arm64 (10.45-1) ... 269s Setting up libpcre2-32-0:arm64 (10.45-1) ... 269s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 269s Setting up libpkgconf3:arm64 (1.8.1-4) ... 269s Setting up libmpc3:arm64 (1.3.1-1build2) ... 269s Setting up icu-devtools (76.1-1ubuntu2) ... 269s Setting up pkgconf-bin (1.8.1-4) ... 269s Setting up liblzma-dev:arm64 (5.6.4-1ubuntu1) ... 269s Setting up libubsan1:arm64 (15-20250404-0ubuntu1) ... 269s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 269s Setting up libpcre2-posix3:arm64 (10.45-1) ... 269s Setting up libhwasan0:arm64 (15-20250404-0ubuntu1) ... 269s Setting up libasan8:arm64 (15-20250404-0ubuntu1) ... 269s Setting up libtsan2:arm64 (15-20250404-0ubuntu1) ... 269s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 269s Setting up libisl23:arm64 (0.27-1) ... 269s Setting up libdeflate-dev:arm64 (1.23-1) ... 269s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 269s Setting up libcc1-0:arm64 (15-20250404-0ubuntu1) ... 269s Setting up liblsan0:arm64 (15-20250404-0ubuntu1) ... 269s Setting up libblas-dev:arm64 (3.12.1-2) ... 269s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 269s Setting up dctrl-tools (2.24-3build3) ... 269s Setting up libitm1:arm64 (15-20250404-0ubuntu1) ... 269s Setting up libbz2-dev:arm64 (1.0.8-6) ... 269s Setting up libpcre2-dev:arm64 (10.45-1) ... 269s Setting up libpng-dev:arm64 (1.6.47-1.1) ... 269s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 269s Setting up pkgconf:arm64 (1.8.1-4) ... 269s Setting up liblapack-dev:arm64 (3.12.1-2) ... 269s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 269s Setting up cpp-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 269s Setting up libgcc-14-dev:arm64 (14.2.0-19ubuntu2) ... 269s Setting up libstdc++-14-dev:arm64 (14.2.0-19ubuntu2) ... 269s Setting up libgfortran-14-dev:arm64 (14.2.0-19ubuntu2) ... 269s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 269s Setting up cpp-14 (14.2.0-19ubuntu2) ... 269s Setting up cpp (4:14.2.0-1ubuntu1) ... 269s Setting up gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 269s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 269s Setting up g++-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 269s Setting up gcc-14 (14.2.0-19ubuntu2) ... 269s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 269s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 269s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 269s Setting up g++-14 (14.2.0-19ubuntu2) ... 269s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 269s Setting up gcc (4:14.2.0-1ubuntu1) ... 269s Setting up g++ (4:14.2.0-1ubuntu1) ... 269s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 269s Setting up build-essential (12.12ubuntu1) ... 269s Setting up gfortran (4:14.2.0-1ubuntu1) ... 269s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 269s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 269s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 269s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 269s Setting up r-base-dev (4.4.3-1) ... 269s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 269s Processing triggers for libc-bin (2.41-6ubuntu1) ... 269s Processing triggers for man-db (2.13.0-1) ... 270s Processing triggers for install-info (7.1.1-1) ... 271s autopkgtest [10:47:12]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 271s autopkgtest [10:47:12]: test pkg-r-autopkgtest: [----------------------- 271s Test: Try to load the R library Epi 271s 271s R version 4.4.3 (2025-02-28) -- "Trophy Case" 271s Copyright (C) 2025 The R Foundation for Statistical Computing 271s Platform: aarch64-unknown-linux-gnu 271s 271s R is free software and comes with ABSOLUTELY NO WARRANTY. 271s You are welcome to redistribute it under certain conditions. 271s Type 'license()' or 'licence()' for distribution details. 271s 271s R is a collaborative project with many contributors. 271s Type 'contributors()' for more information and 271s 'citation()' on how to cite R or R packages in publications. 271s 271s Type 'demo()' for some demos, 'help()' for on-line help, or 271s 'help.start()' for an HTML browser interface to help. 271s Type 'q()' to quit R. 271s 271s > library('Epi') 272s > 272s > 272s Other tests are currently unsupported! 272s They will be progressively added. 273s autopkgtest [10:47:14]: test pkg-r-autopkgtest: -----------------------] 273s pkg-r-autopkgtest PASS 273s autopkgtest [10:47:14]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 273s autopkgtest [10:47:14]: @@@@@@@@@@@@@@@@@@@@ summary 273s vignette PASS 273s pkg-r-autopkgtest PASS 288s nova [W] Using flock in prodstack7-arm64 288s Creating nova instance adt-questing-arm64-r-cran-epi-20250502-104241-juju-7f2275-prod-proposed-migration-environment-21-0f21d44a-b281-453f-b727-0a7a27c036c1 from image adt/ubuntu-questing-arm64-server-20250501.img (UUID 137c3127-57d2-4bf2-a106-d904ad6e43f4)... 288s nova [W] Timed out waiting for 5359542b-17f2-4c0d-b9b5-d29a1d9529a1 to get deleted.