0s autopkgtest [14:47:28]: starting date and time: 2025-05-02 14:47:28+0000
  0s autopkgtest [14:47:28]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [14:47:28]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0zqmaxo0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck --apt-upgrade r-bioc-rtracklayer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-6.secgroup --name adt-questing-arm64-r-bioc-rtracklayer-20250502-143958-juju-7f2275-prod-proposed-migration-environment-20-93663ece-f9cb-4c31-8402-6fb9dfa73e7f --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
 77s autopkgtest [14:48:45]: testbed dpkg architecture: arm64
 77s autopkgtest [14:48:45]: testbed apt version: 3.0.0
 77s autopkgtest [14:48:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 78s autopkgtest [14:48:46]: testbed release detected to be: None
 78s autopkgtest [14:48:46]: updating testbed package index (apt update)
 78s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
 78s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
 78s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
 78s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
 78s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [164 kB]
 78s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.2 kB]
 79s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2024 kB]
 79s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [204 kB]
 79s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1467 kB]
 79s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [14.8 kB]
 79s Fetched 4028 kB in 1s (5643 kB/s)
 80s Reading package lists...
 80s autopkgtest [14:48:48]: upgrading testbed (apt dist-upgrade and autopurge)
 81s Reading package lists...
 81s Building dependency tree...
 81s Reading state information...
 81s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 81s Starting 2 pkgProblemResolver with broken count: 0
 81s Done
 82s Entering ResolveByKeep
 82s 
 82s Calculating upgrade...
 83s The following packages will be upgraded:
 83s   libperl5.40 perl perl-base perl-modules-5.40
 83s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 83s Need to get 10.0 MB of archives.
 83s After this operation, 0 B of additional disk space will be used.
 83s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libperl5.40 arm64 5.40.1-3 [4780 kB]
 83s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl arm64 5.40.1-3 [262 kB]
 83s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-base arm64 5.40.1-3 [1786 kB]
 84s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-modules-5.40 all 5.40.1-3 [3217 kB]
 84s Fetched 10.0 MB in 1s (11.0 MB/s)
 84s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 85225 files and directories currently installed.)
 84s Preparing to unpack .../libperl5.40_5.40.1-3_arm64.deb ...
 84s Unpacking libperl5.40:arm64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
 84s Preparing to unpack .../perl_5.40.1-3_arm64.deb ...
 84s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
 84s Preparing to unpack .../perl-base_5.40.1-3_arm64.deb ...
 84s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
 85s Setting up perl-base (5.40.1-3) ...
 85s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 85225 files and directories currently installed.)
 85s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ...
 85s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
 85s Setting up perl-modules-5.40 (5.40.1-3) ...
 85s Setting up libperl5.40:arm64 (5.40.1-3) ...
 85s Setting up perl (5.40.1-3) ...
 85s Processing triggers for man-db (2.13.0-1) ...
 85s Processing triggers for libc-bin (2.41-6ubuntu1) ...
 86s Reading package lists...
 86s Building dependency tree...
 86s Reading state information...
 86s Starting pkgProblemResolver with broken count: 0
 86s Starting 2 pkgProblemResolver with broken count: 0
 86s Done
 87s Solving dependencies...
 87s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 89s autopkgtest [14:48:57]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr  6 14:37:51 UTC 2025
 89s autopkgtest [14:48:57]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rtracklayer
 91s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-rtracklayer 1.66.0-2 (dsc) [2459 B]
 91s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-rtracklayer 1.66.0-2 (tar) [4113 kB]
 91s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-rtracklayer 1.66.0-2 (diff) [27.5 kB]
 91s gpgv: Signature made Mon Jan 13 14:23:45 2025 UTC
 91s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
 91s gpgv:                issuer "crusoe@debian.org"
 91s gpgv: Can't check signature: No public key
 91s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rtracklayer_1.66.0-2.dsc: no acceptable signature found
 91s autopkgtest [14:48:59]: testing package r-bioc-rtracklayer version 1.66.0-2
 92s autopkgtest [14:49:00]: build not needed
 96s autopkgtest [14:49:04]: test pkg-r-autopkgtest: preparing testbed
 96s Reading package lists...
 96s Building dependency tree...
 96s Reading state information...
 97s Starting pkgProblemResolver with broken count: 20
 97s Starting 2 pkgProblemResolver with broken count: 20
 97s Investigating (0) r-bioc-genomeinfodb:arm64 < none -> 1.42.3+dfsg-1 @un puN Ib >
 97s Broken r-bioc-genomeinfodb:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.13.12)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomeinfodb:arm64 23
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomeinfodb:arm64 23
 97s Investigating (0) r-bioc-xvector:arm64 < none -> 0.46.0-2 @un puN Ib >
 97s Broken r-bioc-xvector:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.23.9)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-xvector:arm64 22
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-xvector:arm64 22
 97s Investigating (0) r-bioc-biostrings:arm64 < none -> 2.74.1+dfsg-2 @un puN Ib >
 97s Broken r-bioc-biostrings:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.31.2)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-biostrings:arm64 11
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-biostrings:arm64 11
 97s Investigating (0) r-cran-vctrs:arm64 < none -> 0.6.5-1 @un puN Ib >
 97s Broken r-cran-vctrs:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 1.1.0)
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-vctrs:arm64 11
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-vctrs:arm64 11
 97s Investigating (0) r-bioc-genomicranges:arm64 < none -> 1.58.0+dfsg-2 @un puN Ib >
 97s Broken r-bioc-genomicranges:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.37.1)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicranges:arm64 11
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicranges:arm64 11
 97s Investigating (0) r-cran-rsqlite:arm64 < none -> 2.3.9-1 @un puN Ib >
 97s Broken r-cran-rsqlite:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-rsqlite:arm64 7
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-rsqlite:arm64 7
 97s Investigating (0) r-bioc-annotationdbi:arm64 < none -> 1.68.0-2 @un puN Ib >
 97s Broken r-bioc-annotationdbi:arm64 Depends on r-bioc-iranges:arm64 < none @un pH >
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-annotationdbi:arm64 6
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-annotationdbi:arm64 6
 97s Investigating (0) r-bioc-rsamtools:arm64 < none -> 2.22.0+dfsg-2 @un puN Ib >
 97s Broken r-bioc-rsamtools:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.13.12)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-rsamtools:arm64 5
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-rsamtools:arm64 5
 97s Investigating (0) r-cran-lifecycle:arm64 < none -> 1.0.4+dfsg-1 @un puN Ib >
 97s Broken r-cran-lifecycle:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 1.1.0)
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-lifecycle:arm64 4
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-lifecycle:arm64 4
 97s Investigating (0) r-bioc-rtracklayer:arm64 < none -> 1.66.0-2 @un puN Ib >
 97s Broken r-bioc-rtracklayer:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.13.13)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-rtracklayer:arm64 4
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-rtracklayer:arm64 4
 97s Investigating (0) r-bioc-s4arrays:arm64 < none -> 1.6.0+dfsg-2 @un puN Ib >
 97s Broken r-bioc-s4arrays:arm64 Depends on r-bioc-iranges:arm64 < none @un pH >
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-s4arrays:arm64 2
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-s4arrays:arm64 2
 97s Investigating (0) r-bioc-genomicalignments:arm64 < none -> 1.42.0-2 @un puN Ib >
 97s Broken r-bioc-genomicalignments:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.23.9)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicalignments:arm64 2
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicalignments:arm64 2
 97s Investigating (0) r-cran-blob:arm64 < none -> 1.2.4-1 @un puN Ib >
 97s Broken r-cran-blob:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-blob:arm64 1
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-blob:arm64 1
 97s Investigating (0) r-bioc-genomicfeatures:arm64 < none -> 1.58.0+dfsg-2 @un puN Ib >
 97s Broken r-bioc-genomicfeatures:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.37.1)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicfeatures:arm64 1
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicfeatures:arm64 1
 97s Investigating (0) r-cran-memoise:arm64 < none -> 2.0.1-1 @un puN Ib >
 97s Broken r-cran-memoise:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 0.4.10)
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-memoise:arm64 1
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-memoise:arm64 1
 97s Investigating (0) r-bioc-bsgenome:arm64 < none -> 1.74.0-2 @un puN Ib >
 97s Broken r-bioc-bsgenome:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.13.16)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-bsgenome:arm64 1
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-bsgenome:arm64 1
 97s Investigating (0) r-bioc-delayedarray:arm64 < none -> 0.32.0+dfsg-2 @un puN Ib >
 97s Broken r-bioc-delayedarray:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.17.3)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-delayedarray:arm64 0
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-delayedarray:arm64 0
 97s Investigating (0) r-bioc-summarizedexperiment:arm64 < none -> 1.36.0+dfsg-2 @un puN Ib >
 97s Broken r-bioc-summarizedexperiment:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.23.9)
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-summarizedexperiment:arm64 0
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-summarizedexperiment:arm64 0
 97s Investigating (0) r-cran-cachem:arm64 < none -> 1.1.0-1 @un puN Ib >
 97s Broken r-cran-cachem:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-cachem:arm64 0
 97s   Considering r-cran-rlang:arm64 4 as a solution to r-cran-cachem:arm64 0
 97s Investigating (0) r-bioc-sparsearray:arm64 < none -> 1.6.2+dfsg-1 @un puN Ib >
 97s Broken r-bioc-sparsearray:arm64 Depends on r-bioc-iranges:arm64 < none @un pH >
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-sparsearray:arm64 0
 97s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-sparsearray:arm64 0
 97s Done
 97s Some packages could not be installed. This may mean that you have
 97s requested an impossible situation or if you are using the unstable
 97s distribution that some required packages have not yet been created
 97s or been moved out of Incoming.
 97s The following information may help to resolve the situation:
 97s 
 97s The following packages have unmet dependencies:
 97s  r-bioc-annotationdbi : Depends: r-bioc-iranges but it is not installable
 97s  r-bioc-biostrings : Depends: r-bioc-iranges (>= 2.31.2) but it is not installable
 97s  r-bioc-bsgenome : Depends: r-bioc-iranges (>= 2.13.16) but it is not installable
 97s  r-bioc-delayedarray : Depends: r-bioc-iranges (>= 2.17.3) but it is not installable
 97s  r-bioc-genomeinfodb : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable
 97s  r-bioc-genomicalignments : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
 97s  r-bioc-genomicfeatures : Depends: r-bioc-iranges (>= 2.37.1) but it is not installable
 97s  r-bioc-genomicranges : Depends: r-bioc-iranges (>= 2.37.1) but it is not installable
 97s  r-bioc-rsamtools : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable
 97s  r-bioc-rtracklayer : Depends: r-bioc-iranges (>= 2.13.13) but it is not installable
 97s  r-bioc-s4arrays : Depends: r-bioc-iranges but it is not installable
 97s  r-bioc-sparsearray : Depends: r-bioc-iranges but it is not installable
 97s  r-bioc-summarizedexperiment : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
 97s  r-bioc-xvector : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
 97s  r-cran-blob : Depends: r-cran-rlang but it is not installable
 97s  r-cran-cachem : Depends: r-cran-rlang but it is not installable
 97s  r-cran-lifecycle : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
 97s  r-cran-memoise : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
 97s  r-cran-rsqlite : Depends: r-cran-rlang but it is not installable
 97s  r-cran-vctrs : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
 97s E: Unable to correct problems, you have held broken packages.
 97s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed
 97s Reading package lists...
 98s Building dependency tree...
 98s Reading state information...
 98s Starting pkgProblemResolver with broken count: 0
 98s Starting 2 pkgProblemResolver with broken count: 0
 98s Done
 99s The following NEW packages will be installed:
 99s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
 99s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
 99s   g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
 99s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
 99s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
 99s   libasan8 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev
 99s   libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1
 99s   libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3
 99s   libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0
 99s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
 99s   liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
 99s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
 99s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
 99s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
 99s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
 99s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
 99s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 libzstd-dev
 99s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
 99s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio
 99s   r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray
 99s   r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata
 99s   r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
 99s   r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics
 99s   r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
 99s   r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
 99s   r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc
 99s   r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops
 99s   r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11
 99s   r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-formatr
 99s   r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-httr
 99s   r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle
 99s   r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl
 99s   r-cran-pkgconfig r-cran-plogr r-cran-png r-cran-r6 r-cran-rcurl
 99s   r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-runit
 99s   r-cran-snow r-cran-statmod r-cran-survival r-cran-sys r-cran-vctrs
 99s   r-cran-xml r-cran-xtable r-cran-yaml unzip x11-common xdg-utils zip
 99s   zlib1g-dev
 99s The following packages will be upgraded:
 99s   gcc-14-base gcc-15-base libatomic1 libgcc-s1 libstdc++6 libtirpc-common
 99s   libtirpc3t64 libzstd1 zstd
 99s 9 upgraded, 178 newly installed, 0 to remove and 86 not upgraded.
 99s Need to get 315 MB of archives.
 99s After this operation, 1125 MB of additional disk space will be used.
 99s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-15-base arm64 15.1.0-1ubuntu1 [54.5 kB]
 99s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgcc-s1 arm64 15.1.0-1ubuntu1 [61.0 kB]
 99s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libatomic1 arm64 15.1.0-1ubuntu1 [11.3 kB]
 99s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libstdc++6 arm64 15.1.0-1ubuntu1 [761 kB]
 99s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libzstd1 arm64 1.5.7+dfsg-1 [283 kB]
 99s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-14-base arm64 14.2.0-22ubuntu1 [55.2 kB]
 99s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtirpc-common all 1.3.6+ds-1 [8198 B]
 99s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtirpc3t64 arm64 1.3.6+ds-1 [83.9 kB]
 99s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB]
 99s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
 99s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [10.6 MB]
 99s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 cpp-14 arm64 14.2.0-22ubuntu1 [1030 B]
 99s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
 99s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
 99s Get:15 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libcc1-0 arm64 15.1.0-1ubuntu1 [49.1 kB]
 99s Get:16 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgomp1 arm64 15.1.0-1ubuntu1 [147 kB]
 99s Get:17 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libitm1 arm64 15.1.0-1ubuntu1 [28.1 kB]
 99s Get:18 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libasan8 arm64 15.1.0-1ubuntu1 [2922 kB]
 99s Get:19 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 liblsan0 arm64 15.1.0-1ubuntu1 [1317 kB]
 99s Get:20 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtsan2 arm64 15.1.0-1ubuntu1 [2691 kB]
 99s Get:21 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libubsan1 arm64 15.1.0-1ubuntu1 [1176 kB]
 99s Get:22 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libhwasan0 arm64 15.1.0-1ubuntu1 [1639 kB]
 99s Get:23 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgcc-14-dev arm64 14.2.0-22ubuntu1 [2593 kB]
 99s Get:24 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [20.9 MB]
100s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-14 arm64 14.2.0-22ubuntu1 [536 kB]
100s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
100s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
100s Get:28 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libstdc++-14-dev arm64 14.2.0-22ubuntu1 [2820 kB]
100s Get:29 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [12.1 MB]
100s Get:30 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 g++-14 arm64 14.2.0-22ubuntu1 [24.0 kB]
100s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
100s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
100s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 build-essential arm64 12.12ubuntu1 [5082 B]
100s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
100s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
100s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
100s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB]
100s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB]
100s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig arm64 2.15.0-2.2ubuntu1 [191 kB]
100s Get:40 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgfortran5 arm64 15.1.0-1ubuntu1 [444 kB]
100s Get:41 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgfortran-14-dev arm64 14.2.0-22ubuntu1 [498 kB]
100s Get:42 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [11.4 MB]
100s Get:43 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gfortran-14 arm64 14.2.0-22ubuntu1 [14.4 kB]
100s Get:44 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
100s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
100s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
100s Get:47 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
100s Get:48 http://ftpmaster.internal/ubuntu questing/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
100s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 libboost1.83-dev arm64 1.83.0-4.2ubuntu1 [10.7 MB]
100s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B]
100s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
100s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
100s Get:53 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
100s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
100s Get:55 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB]
100s Get:56 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB]
100s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
100s Get:58 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB]
100s Get:59 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libdeflate-dev arm64 1.23-2 [53.6 kB]
100s Get:60 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
100s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
100s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB]
100s Get:63 http://ftpmaster.internal/ubuntu questing/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
100s Get:64 http://ftpmaster.internal/ubuntu questing/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
100s Get:65 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
100s Get:66 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
100s Get:67 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
100s Get:68 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
100s Get:69 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
101s Get:70 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
101s Get:71 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
101s Get:72 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
101s Get:73 http://ftpmaster.internal/ubuntu questing/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
101s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
101s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
101s Get:76 http://ftpmaster.internal/ubuntu questing/main arm64 libpango-1.0-0 arm64 1.56.3-1 [238 kB]
101s Get:77 http://ftpmaster.internal/ubuntu questing/main arm64 libpangoft2-1.0-0 arm64 1.56.3-1 [49.8 kB]
101s Get:78 http://ftpmaster.internal/ubuntu questing/main arm64 libpangocairo-1.0-0 arm64 1.56.3-1 [27.6 kB]
101s Get:79 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
101s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
101s Get:81 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
101s Get:82 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
101s Get:83 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
101s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
101s Get:85 http://ftpmaster.internal/ubuntu questing/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
101s Get:86 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
101s Get:87 http://ftpmaster.internal/ubuntu questing/main arm64 libpng-dev arm64 1.6.47-1.1 [269 kB]
101s Get:88 http://ftpmaster.internal/ubuntu questing/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
101s Get:89 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
101s Get:90 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libsm6 arm64 2:1.2.6-1 [16.6 kB]
101s Get:91 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
101s Get:92 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
101s Get:93 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
101s Get:94 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.7.0-3ubuntu1 [197 kB]
101s Get:95 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
101s Get:96 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
101s Get:97 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
101s Get:98 http://ftpmaster.internal/ubuntu questing/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
101s Get:99 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libzstd-dev arm64 1.5.7+dfsg-1 [358 kB]
101s Get:100 http://ftpmaster.internal/ubuntu questing/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
101s Get:101 http://ftpmaster.internal/ubuntu questing/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
101s Get:102 http://ftpmaster.internal/ubuntu questing/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
101s Get:103 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-base-core arm64 4.5.0-3 [28.7 MB]
101s Get:104 http://ftpmaster.internal/ubuntu questing/main arm64 liblzma-dev arm64 5.6.4-1ubuntu1 [180 kB]
101s Get:105 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
101s Get:106 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
101s Get:107 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB]
101s Get:108 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-base-dev all 4.5.0-3 [4188 B]
101s Get:109 http://ftpmaster.internal/ubuntu questing/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
101s Get:110 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
101s Get:111 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB]
101s Get:112 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB]
101s Get:113 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB]
101s Get:114 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB]
101s Get:115 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB]
101s Get:116 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB]
101s Get:117 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB]
102s Get:118 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB]
102s Get:119 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
102s Get:120 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
102s Get:121 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
102s Get:122 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB]
102s Get:123 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB]
102s Get:124 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB]
102s Get:125 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
102s Get:126 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
102s Get:127 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
102s Get:128 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB]
102s Get:129 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB]
102s Get:130 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB]
102s Get:131 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB]
102s Get:132 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB]
102s Get:133 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB]
102s Get:134 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB]
102s Get:135 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB]
102s Get:136 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB]
102s Get:137 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
102s Get:138 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB]
102s Get:139 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
102s Get:140 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB]
102s Get:141 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
102s Get:142 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
102s Get:143 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
102s Get:144 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
102s Get:145 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB]
102s Get:146 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB]
102s Get:147 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
102s Get:148 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB]
102s Get:149 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
102s Get:150 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB]
102s Get:151 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
102s Get:152 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-formatr all 1.14-2 [152 kB]
102s Get:153 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
102s Get:154 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
102s Get:155 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
102s Get:156 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
102s Get:157 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB]
102s Get:158 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
102s Get:159 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB]
103s Get:160 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB]
103s Get:161 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB]
103s Get:162 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB]
103s Get:163 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB]
103s Get:164 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB]
103s Get:165 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
103s Get:166 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB]
103s Get:167 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB]
103s Get:168 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB]
103s Get:169 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB]
103s Get:170 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-2 [1369 kB]
103s Get:171 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB]
103s Get:172 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
103s Get:173 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB]
103s Get:174 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB]
103s Get:175 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB]
103s Get:176 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB]
103s Get:177 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB]
103s Get:178 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-bioc-rtracklayer arm64 1.66.0-3 [5216 kB]
103s Get:179 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-bsgenome all 1.74.0-2 [7001 kB]
104s Get:180 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB]
104s Get:181 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genefilter arm64 1.88.0-2 [1241 kB]
104s Get:182 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
104s Get:183 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB]
104s Get:184 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB]
104s Get:185 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-org.hs.eg.db all 3.20.0-3 [63.1 MB]
105s Get:186 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-runit all 0.4.33-1 [377 kB]
105s Get:187 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 zstd arm64 1.5.7+dfsg-1 [607 kB]
106s Preconfiguring packages ...
106s Fetched 315 MB in 7s (47.3 MB/s)
106s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 85225 files and directories currently installed.)
106s Preparing to unpack .../gcc-15-base_15.1.0-1ubuntu1_arm64.deb ...
106s Unpacking gcc-15-base:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
106s Setting up gcc-15-base:arm64 (15.1.0-1ubuntu1) ...
106s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 85225 files and directories currently installed.)
106s Preparing to unpack .../libgcc-s1_15.1.0-1ubuntu1_arm64.deb ...
106s Unpacking libgcc-s1:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
106s Setting up libgcc-s1:arm64 (15.1.0-1ubuntu1) ...
106s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 85225 files and directories currently installed.)
106s Preparing to unpack .../libatomic1_15.1.0-1ubuntu1_arm64.deb ...
106s Unpacking libatomic1:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
106s Preparing to unpack .../libstdc++6_15.1.0-1ubuntu1_arm64.deb ...
106s Unpacking libstdc++6:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
106s Setting up libstdc++6:arm64 (15.1.0-1ubuntu1) ...
106s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 85225 files and directories currently installed.)
106s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_arm64.deb ...
106s Unpacking libzstd1:arm64 (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ...
106s Setting up libzstd1:arm64 (1.5.7+dfsg-1) ...
106s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 85225 files and directories currently installed.)
106s Preparing to unpack .../000-gcc-14-base_14.2.0-22ubuntu1_arm64.deb ...
106s Unpacking gcc-14-base:arm64 (14.2.0-22ubuntu1) over (14.2.0-19ubuntu2) ...
106s Preparing to unpack .../001-libtirpc-common_1.3.6+ds-1_all.deb ...
106s Unpacking libtirpc-common (1.3.6+ds-1) over (1.3.4+ds-1.3) ...
106s Preparing to unpack .../002-libtirpc3t64_1.3.6+ds-1_arm64.deb ...
106s Unpacking libtirpc3t64:arm64 (1.3.6+ds-1) over (1.3.4+ds-1.3) ...
106s Selecting previously unselected package libisl23:arm64.
106s Preparing to unpack .../003-libisl23_0.27-1_arm64.deb ...
106s Unpacking libisl23:arm64 (0.27-1) ...
106s Selecting previously unselected package libmpc3:arm64.
106s Preparing to unpack .../004-libmpc3_1.3.1-1build2_arm64.deb ...
106s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
107s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
107s Preparing to unpack .../005-cpp-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
107s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
107s Selecting previously unselected package cpp-14.
107s Preparing to unpack .../006-cpp-14_14.2.0-22ubuntu1_arm64.deb ...
107s Unpacking cpp-14 (14.2.0-22ubuntu1) ...
107s Selecting previously unselected package cpp-aarch64-linux-gnu.
107s Preparing to unpack .../007-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
107s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
107s Selecting previously unselected package cpp.
107s Preparing to unpack .../008-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
107s Unpacking cpp (4:14.2.0-1ubuntu1) ...
107s Selecting previously unselected package libcc1-0:arm64.
107s Preparing to unpack .../009-libcc1-0_15.1.0-1ubuntu1_arm64.deb ...
107s Unpacking libcc1-0:arm64 (15.1.0-1ubuntu1) ...
107s Selecting previously unselected package libgomp1:arm64.
107s Preparing to unpack .../010-libgomp1_15.1.0-1ubuntu1_arm64.deb ...
107s Unpacking libgomp1:arm64 (15.1.0-1ubuntu1) ...
107s Selecting previously unselected package libitm1:arm64.
107s Preparing to unpack .../011-libitm1_15.1.0-1ubuntu1_arm64.deb ...
107s Unpacking libitm1:arm64 (15.1.0-1ubuntu1) ...
107s Selecting previously unselected package libasan8:arm64.
107s Preparing to unpack .../012-libasan8_15.1.0-1ubuntu1_arm64.deb ...
107s Unpacking libasan8:arm64 (15.1.0-1ubuntu1) ...
107s Selecting previously unselected package liblsan0:arm64.
107s Preparing to unpack .../013-liblsan0_15.1.0-1ubuntu1_arm64.deb ...
107s Unpacking liblsan0:arm64 (15.1.0-1ubuntu1) ...
107s Selecting previously unselected package libtsan2:arm64.
107s Preparing to unpack .../014-libtsan2_15.1.0-1ubuntu1_arm64.deb ...
107s Unpacking libtsan2:arm64 (15.1.0-1ubuntu1) ...
107s Selecting previously unselected package libubsan1:arm64.
107s Preparing to unpack .../015-libubsan1_15.1.0-1ubuntu1_arm64.deb ...
107s Unpacking libubsan1:arm64 (15.1.0-1ubuntu1) ...
107s Selecting previously unselected package libhwasan0:arm64.
107s Preparing to unpack .../016-libhwasan0_15.1.0-1ubuntu1_arm64.deb ...
107s Unpacking libhwasan0:arm64 (15.1.0-1ubuntu1) ...
107s Selecting previously unselected package libgcc-14-dev:arm64.
107s Preparing to unpack .../017-libgcc-14-dev_14.2.0-22ubuntu1_arm64.deb ...
107s Unpacking libgcc-14-dev:arm64 (14.2.0-22ubuntu1) ...
107s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
107s Preparing to unpack .../018-gcc-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
107s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
108s Selecting previously unselected package gcc-14.
108s Preparing to unpack .../019-gcc-14_14.2.0-22ubuntu1_arm64.deb ...
108s Unpacking gcc-14 (14.2.0-22ubuntu1) ...
108s Selecting previously unselected package gcc-aarch64-linux-gnu.
108s Preparing to unpack .../020-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
108s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
108s Selecting previously unselected package gcc.
108s Preparing to unpack .../021-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
108s Unpacking gcc (4:14.2.0-1ubuntu1) ...
108s Selecting previously unselected package libstdc++-14-dev:arm64.
108s Preparing to unpack .../022-libstdc++-14-dev_14.2.0-22ubuntu1_arm64.deb ...
108s Unpacking libstdc++-14-dev:arm64 (14.2.0-22ubuntu1) ...
108s Selecting previously unselected package g++-14-aarch64-linux-gnu.
108s Preparing to unpack .../023-g++-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
108s Unpacking g++-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
108s Selecting previously unselected package g++-14.
108s Preparing to unpack .../024-g++-14_14.2.0-22ubuntu1_arm64.deb ...
108s Unpacking g++-14 (14.2.0-22ubuntu1) ...
108s Selecting previously unselected package g++-aarch64-linux-gnu.
108s Preparing to unpack .../025-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
108s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
108s Selecting previously unselected package g++.
108s Preparing to unpack .../026-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
108s Unpacking g++ (4:14.2.0-1ubuntu1) ...
108s Selecting previously unselected package build-essential.
108s Preparing to unpack .../027-build-essential_12.12ubuntu1_arm64.deb ...
108s Unpacking build-essential (12.12ubuntu1) ...
108s Selecting previously unselected package dctrl-tools.
108s Preparing to unpack .../028-dctrl-tools_2.24-3build3_arm64.deb ...
108s Unpacking dctrl-tools (2.24-3build3) ...
108s Selecting previously unselected package fonts-dejavu-mono.
108s Preparing to unpack .../029-fonts-dejavu-mono_2.37-8_all.deb ...
108s Unpacking fonts-dejavu-mono (2.37-8) ...
108s Selecting previously unselected package fonts-dejavu-core.
108s Preparing to unpack .../030-fonts-dejavu-core_2.37-8_all.deb ...
108s Unpacking fonts-dejavu-core (2.37-8) ...
108s Selecting previously unselected package fontconfig-config.
108s Preparing to unpack .../031-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ...
109s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
109s Selecting previously unselected package libfontconfig1:arm64.
109s Preparing to unpack .../032-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ...
109s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ...
109s Selecting previously unselected package fontconfig.
109s Preparing to unpack .../033-fontconfig_2.15.0-2.2ubuntu1_arm64.deb ...
109s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
109s Selecting previously unselected package libgfortran5:arm64.
109s Preparing to unpack .../034-libgfortran5_15.1.0-1ubuntu1_arm64.deb ...
109s Unpacking libgfortran5:arm64 (15.1.0-1ubuntu1) ...
109s Selecting previously unselected package libgfortran-14-dev:arm64.
109s Preparing to unpack .../035-libgfortran-14-dev_14.2.0-22ubuntu1_arm64.deb ...
109s Unpacking libgfortran-14-dev:arm64 (14.2.0-22ubuntu1) ...
109s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
109s Preparing to unpack .../036-gfortran-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
109s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
109s Selecting previously unselected package gfortran-14.
109s Preparing to unpack .../037-gfortran-14_14.2.0-22ubuntu1_arm64.deb ...
109s Unpacking gfortran-14 (14.2.0-22ubuntu1) ...
109s Selecting previously unselected package gfortran-aarch64-linux-gnu.
109s Preparing to unpack .../038-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
109s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
109s Selecting previously unselected package gfortran.
109s Preparing to unpack .../039-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
109s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
109s Selecting previously unselected package icu-devtools.
109s Preparing to unpack .../040-icu-devtools_76.1-1ubuntu2_arm64.deb ...
109s Unpacking icu-devtools (76.1-1ubuntu2) ...
109s Selecting previously unselected package libblas3:arm64.
109s Preparing to unpack .../041-libblas3_3.12.1-2_arm64.deb ...
109s Unpacking libblas3:arm64 (3.12.1-2) ...
109s Selecting previously unselected package libblas-dev:arm64.
109s Preparing to unpack .../042-libblas-dev_3.12.1-2_arm64.deb ...
109s Unpacking libblas-dev:arm64 (3.12.1-2) ...
109s Selecting previously unselected package libboost1.83-dev:arm64.
109s Preparing to unpack .../043-libboost1.83-dev_1.83.0-4.2ubuntu1_arm64.deb ...
109s Unpacking libboost1.83-dev:arm64 (1.83.0-4.2ubuntu1) ...
111s Selecting previously unselected package libboost-dev:arm64.
111s Preparing to unpack .../044-libboost-dev_1.83.0.2ubuntu1_arm64.deb ...
111s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ...
111s Selecting previously unselected package libbz2-dev:arm64.
111s Preparing to unpack .../045-libbz2-dev_1.0.8-6_arm64.deb ...
111s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
111s Selecting previously unselected package libpixman-1-0:arm64.
111s Preparing to unpack .../046-libpixman-1-0_0.44.0-3_arm64.deb ...
111s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
111s Selecting previously unselected package libxcb-render0:arm64.
111s Preparing to unpack .../047-libxcb-render0_1.17.0-2_arm64.deb ...
111s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
111s Selecting previously unselected package libxcb-shm0:arm64.
111s Preparing to unpack .../048-libxcb-shm0_1.17.0-2_arm64.deb ...
111s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
111s Selecting previously unselected package libxrender1:arm64.
111s Preparing to unpack .../049-libxrender1_1%3a0.9.12-1_arm64.deb ...
111s Unpacking libxrender1:arm64 (1:0.9.12-1) ...
111s Selecting previously unselected package libcairo2:arm64.
111s Preparing to unpack .../050-libcairo2_1.18.4-1_arm64.deb ...
111s Unpacking libcairo2:arm64 (1.18.4-1) ...
111s Selecting previously unselected package libdatrie1:arm64.
111s Preparing to unpack .../051-libdatrie1_0.2.13-3build1_arm64.deb ...
111s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
111s Selecting previously unselected package libdeflate0:arm64.
111s Preparing to unpack .../052-libdeflate0_1.23-2_arm64.deb ...
111s Unpacking libdeflate0:arm64 (1.23-2) ...
111s Selecting previously unselected package libdeflate-dev:arm64.
111s Preparing to unpack .../053-libdeflate-dev_1.23-2_arm64.deb ...
111s Unpacking libdeflate-dev:arm64 (1.23-2) ...
111s Selecting previously unselected package libgraphite2-3:arm64.
111s Preparing to unpack .../054-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
111s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
111s Selecting previously unselected package libharfbuzz0b:arm64.
111s Preparing to unpack .../055-libharfbuzz0b_10.2.0-1_arm64.deb ...
111s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
111s Selecting previously unselected package x11-common.
111s Preparing to unpack .../056-x11-common_1%3a7.7+23ubuntu4_all.deb ...
111s Unpacking x11-common (1:7.7+23ubuntu4) ...
111s Selecting previously unselected package libice6:arm64.
111s Preparing to unpack .../057-libice6_2%3a1.1.1-1_arm64.deb ...
111s Unpacking libice6:arm64 (2:1.1.1-1) ...
111s Selecting previously unselected package libicu-dev:arm64.
111s Preparing to unpack .../058-libicu-dev_76.1-1ubuntu2_arm64.deb ...
111s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
111s Selecting previously unselected package libjpeg-turbo8:arm64.
111s Preparing to unpack .../059-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
111s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
111s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
111s Preparing to unpack .../060-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
111s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
111s Selecting previously unselected package libjpeg8:arm64.
111s Preparing to unpack .../061-libjpeg8_8c-2ubuntu11_arm64.deb ...
111s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
112s Selecting previously unselected package libjpeg8-dev:arm64.
112s Preparing to unpack .../062-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
112s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
112s Selecting previously unselected package libjpeg-dev:arm64.
112s Preparing to unpack .../063-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
112s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
112s Selecting previously unselected package liblapack3:arm64.
112s Preparing to unpack .../064-liblapack3_3.12.1-2_arm64.deb ...
112s Unpacking liblapack3:arm64 (3.12.1-2) ...
112s Selecting previously unselected package liblapack-dev:arm64.
112s Preparing to unpack .../065-liblapack-dev_3.12.1-2_arm64.deb ...
112s Unpacking liblapack-dev:arm64 (3.12.1-2) ...
112s Selecting previously unselected package liblerc4:arm64.
112s Preparing to unpack .../066-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
112s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
112s Selecting previously unselected package libncurses-dev:arm64.
112s Preparing to unpack .../067-libncurses-dev_6.5+20250216-2_arm64.deb ...
112s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ...
112s Selecting previously unselected package libthai-data.
112s Preparing to unpack .../068-libthai-data_0.1.29-2build1_all.deb ...
112s Unpacking libthai-data (0.1.29-2build1) ...
112s Selecting previously unselected package libthai0:arm64.
112s Preparing to unpack .../069-libthai0_0.1.29-2build1_arm64.deb ...
112s Unpacking libthai0:arm64 (0.1.29-2build1) ...
112s Selecting previously unselected package libpango-1.0-0:arm64.
112s Preparing to unpack .../070-libpango-1.0-0_1.56.3-1_arm64.deb ...
112s Unpacking libpango-1.0-0:arm64 (1.56.3-1) ...
112s Selecting previously unselected package libpangoft2-1.0-0:arm64.
112s Preparing to unpack .../071-libpangoft2-1.0-0_1.56.3-1_arm64.deb ...
112s Unpacking libpangoft2-1.0-0:arm64 (1.56.3-1) ...
112s Selecting previously unselected package libpangocairo-1.0-0:arm64.
112s Preparing to unpack .../072-libpangocairo-1.0-0_1.56.3-1_arm64.deb ...
112s Unpacking libpangocairo-1.0-0:arm64 (1.56.3-1) ...
112s Selecting previously unselected package libpaper2:arm64.
112s Preparing to unpack .../073-libpaper2_2.2.5-0.3_arm64.deb ...
112s Unpacking libpaper2:arm64 (2.2.5-0.3) ...
112s Selecting previously unselected package libpaper-utils.
112s Preparing to unpack .../074-libpaper-utils_2.2.5-0.3_arm64.deb ...
112s Unpacking libpaper-utils (2.2.5-0.3) ...
112s Selecting previously unselected package libpcre2-16-0:arm64.
112s Preparing to unpack .../075-libpcre2-16-0_10.45-1_arm64.deb ...
112s Unpacking libpcre2-16-0:arm64 (10.45-1) ...
112s Selecting previously unselected package libpcre2-32-0:arm64.
112s Preparing to unpack .../076-libpcre2-32-0_10.45-1_arm64.deb ...
112s Unpacking libpcre2-32-0:arm64 (10.45-1) ...
112s Selecting previously unselected package libpcre2-posix3:arm64.
112s Preparing to unpack .../077-libpcre2-posix3_10.45-1_arm64.deb ...
112s Unpacking libpcre2-posix3:arm64 (10.45-1) ...
112s Selecting previously unselected package libpcre2-dev:arm64.
112s Preparing to unpack .../078-libpcre2-dev_10.45-1_arm64.deb ...
112s Unpacking libpcre2-dev:arm64 (10.45-1) ...
112s Selecting previously unselected package libpkgconf3:arm64.
112s Preparing to unpack .../079-libpkgconf3_1.8.1-4_arm64.deb ...
112s Unpacking libpkgconf3:arm64 (1.8.1-4) ...
112s Selecting previously unselected package zlib1g-dev:arm64.
112s Preparing to unpack .../080-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
112s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
112s Selecting previously unselected package libpng-dev:arm64.
112s Preparing to unpack .../081-libpng-dev_1.6.47-1.1_arm64.deb ...
112s Unpacking libpng-dev:arm64 (1.6.47-1.1) ...
112s Selecting previously unselected package libreadline-dev:arm64.
112s Preparing to unpack .../082-libreadline-dev_8.2-6_arm64.deb ...
112s Unpacking libreadline-dev:arm64 (8.2-6) ...
112s Selecting previously unselected package libsharpyuv0:arm64.
112s Preparing to unpack .../083-libsharpyuv0_1.5.0-0.1_arm64.deb ...
112s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
113s Selecting previously unselected package libsm6:arm64.
113s Preparing to unpack .../084-libsm6_2%3a1.2.6-1_arm64.deb ...
113s Unpacking libsm6:arm64 (2:1.2.6-1) ...
113s Selecting previously unselected package libtcl8.6:arm64.
113s Preparing to unpack .../085-libtcl8.6_8.6.16+dfsg-1_arm64.deb ...
113s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ...
113s Selecting previously unselected package libjbig0:arm64.
113s Preparing to unpack .../086-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
113s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
113s Selecting previously unselected package libwebp7:arm64.
113s Preparing to unpack .../087-libwebp7_1.5.0-0.1_arm64.deb ...
113s Unpacking libwebp7:arm64 (1.5.0-0.1) ...
113s Selecting previously unselected package libtiff6:arm64.
113s Preparing to unpack .../088-libtiff6_4.7.0-3ubuntu1_arm64.deb ...
113s Unpacking libtiff6:arm64 (4.7.0-3ubuntu1) ...
113s Selecting previously unselected package libxft2:arm64.
113s Preparing to unpack .../089-libxft2_2.3.6-1build1_arm64.deb ...
113s Unpacking libxft2:arm64 (2.3.6-1build1) ...
113s Selecting previously unselected package libxss1:arm64.
113s Preparing to unpack .../090-libxss1_1%3a1.2.3-1build3_arm64.deb ...
113s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
113s Selecting previously unselected package libtk8.6:arm64.
113s Preparing to unpack .../091-libtk8.6_8.6.16-1_arm64.deb ...
113s Unpacking libtk8.6:arm64 (8.6.16-1) ...
113s Selecting previously unselected package libxt6t64:arm64.
113s Preparing to unpack .../092-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ...
113s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ...
113s Selecting previously unselected package libzstd-dev:arm64.
113s Preparing to unpack .../093-libzstd-dev_1.5.7+dfsg-1_arm64.deb ...
113s Unpacking libzstd-dev:arm64 (1.5.7+dfsg-1) ...
113s Selecting previously unselected package zip.
113s Preparing to unpack .../094-zip_3.0-14ubuntu2_arm64.deb ...
113s Unpacking zip (3.0-14ubuntu2) ...
113s Selecting previously unselected package unzip.
113s Preparing to unpack .../095-unzip_6.0-28ubuntu6_arm64.deb ...
113s Unpacking unzip (6.0-28ubuntu6) ...
113s Selecting previously unselected package xdg-utils.
113s Preparing to unpack .../096-xdg-utils_1.2.1-2ubuntu1_all.deb ...
113s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
113s Selecting previously unselected package r-base-core.
113s Preparing to unpack .../097-r-base-core_4.5.0-3_arm64.deb ...
113s Unpacking r-base-core (4.5.0-3) ...
113s Selecting previously unselected package liblzma-dev:arm64.
113s Preparing to unpack .../098-liblzma-dev_5.6.4-1ubuntu1_arm64.deb ...
113s Unpacking liblzma-dev:arm64 (5.6.4-1ubuntu1) ...
113s Selecting previously unselected package pkgconf-bin.
113s Preparing to unpack .../099-pkgconf-bin_1.8.1-4_arm64.deb ...
113s Unpacking pkgconf-bin (1.8.1-4) ...
113s Selecting previously unselected package pkgconf:arm64.
113s Preparing to unpack .../100-pkgconf_1.8.1-4_arm64.deb ...
113s Unpacking pkgconf:arm64 (1.8.1-4) ...
113s Selecting previously unselected package libtirpc-dev:arm64.
114s Preparing to unpack .../101-libtirpc-dev_1.3.6+ds-1_arm64.deb ...
114s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ...
114s Selecting previously unselected package r-base-dev.
114s Preparing to unpack .../102-r-base-dev_4.5.0-3_all.deb ...
114s Unpacking r-base-dev (4.5.0-3) ...
114s Selecting previously unselected package pkg-r-autopkgtest.
114s Preparing to unpack .../103-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
114s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
114s Selecting previously unselected package r-bioc-biocgenerics.
114s Preparing to unpack .../104-r-bioc-biocgenerics_0.52.0-2_all.deb ...
114s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
114s Selecting previously unselected package r-bioc-biobase.
114s Preparing to unpack .../105-r-bioc-biobase_2.66.0-2_arm64.deb ...
114s Unpacking r-bioc-biobase (2.66.0-2) ...
114s Selecting previously unselected package r-bioc-s4vectors.
114s Preparing to unpack .../106-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ...
114s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
114s Selecting previously unselected package r-bioc-iranges.
114s Preparing to unpack .../107-r-bioc-iranges_2.40.1-3_arm64.deb ...
114s Unpacking r-bioc-iranges (2.40.1-3) ...
114s Selecting previously unselected package r-cran-dbi.
114s Preparing to unpack .../108-r-cran-dbi_1.2.3-1_all.deb ...
114s Unpacking r-cran-dbi (1.2.3-1) ...
114s Selecting previously unselected package r-cran-bit.
114s Preparing to unpack .../109-r-cran-bit_4.6.0+dfsg-1_arm64.deb ...
114s Unpacking r-cran-bit (4.6.0+dfsg-1) ...
114s Selecting previously unselected package r-cran-bit64.
114s Preparing to unpack .../110-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ...
114s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ...
114s Selecting previously unselected package r-cran-rlang.
114s Preparing to unpack .../111-r-cran-rlang_1.1.5-3_arm64.deb ...
114s Unpacking r-cran-rlang (1.1.5-3) ...
114s Selecting previously unselected package r-cran-cli.
114s Preparing to unpack .../112-r-cran-cli_3.6.4-1_arm64.deb ...
114s Unpacking r-cran-cli (3.6.4-1) ...
114s Selecting previously unselected package r-cran-glue.
114s Preparing to unpack .../113-r-cran-glue_1.8.0-1_arm64.deb ...
114s Unpacking r-cran-glue (1.8.0-1) ...
114s Selecting previously unselected package r-cran-lifecycle.
114s Preparing to unpack .../114-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
114s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
114s Selecting previously unselected package r-cran-vctrs.
114s Preparing to unpack .../115-r-cran-vctrs_0.6.5-1_arm64.deb ...
114s Unpacking r-cran-vctrs (0.6.5-1) ...
114s Selecting previously unselected package r-cran-blob.
114s Preparing to unpack .../116-r-cran-blob_1.2.4-1_all.deb ...
114s Unpacking r-cran-blob (1.2.4-1) ...
114s Selecting previously unselected package r-cran-fastmap.
114s Preparing to unpack .../117-r-cran-fastmap_1.2.0-1_arm64.deb ...
114s Unpacking r-cran-fastmap (1.2.0-1) ...
114s Selecting previously unselected package r-cran-cachem.
114s Preparing to unpack .../118-r-cran-cachem_1.1.0-1_arm64.deb ...
114s Unpacking r-cran-cachem (1.1.0-1) ...
114s Selecting previously unselected package r-cran-memoise.
114s Preparing to unpack .../119-r-cran-memoise_2.0.1-1_all.deb ...
114s Unpacking r-cran-memoise (2.0.1-1) ...
114s Selecting previously unselected package r-cran-pkgconfig.
114s Preparing to unpack .../120-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
114s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
114s Selecting previously unselected package r-cran-plogr.
114s Preparing to unpack .../121-r-cran-plogr_0.2.0-3build1_all.deb ...
114s Unpacking r-cran-plogr (0.2.0-3build1) ...
114s Selecting previously unselected package r-cran-cpp11.
114s Preparing to unpack .../122-r-cran-cpp11_0.5.2-1_all.deb ...
114s Unpacking r-cran-cpp11 (0.5.2-1) ...
114s Selecting previously unselected package r-cran-rsqlite.
114s Preparing to unpack .../123-r-cran-rsqlite_2.3.9-1_arm64.deb ...
114s Unpacking r-cran-rsqlite (2.3.9-1) ...
114s Selecting previously unselected package r-cran-curl.
115s Preparing to unpack .../124-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ...
115s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
115s Selecting previously unselected package r-cran-jsonlite.
115s Preparing to unpack .../125-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ...
115s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
115s Selecting previously unselected package r-cran-mime.
115s Preparing to unpack .../126-r-cran-mime_0.12-2_arm64.deb ...
115s Unpacking r-cran-mime (0.12-2) ...
115s Selecting previously unselected package r-cran-sys.
115s Preparing to unpack .../127-r-cran-sys_3.4.3-1_arm64.deb ...
115s Unpacking r-cran-sys (3.4.3-1) ...
115s Selecting previously unselected package r-cran-askpass.
115s Preparing to unpack .../128-r-cran-askpass_1.2.1-1_arm64.deb ...
115s Unpacking r-cran-askpass (1.2.1-1) ...
115s Selecting previously unselected package r-cran-openssl.
115s Preparing to unpack .../129-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ...
115s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
115s Selecting previously unselected package r-cran-r6.
115s Preparing to unpack .../130-r-cran-r6_2.6.1-1_all.deb ...
115s Unpacking r-cran-r6 (2.6.1-1) ...
115s Selecting previously unselected package r-cran-httr.
115s Preparing to unpack .../131-r-cran-httr_1.4.7+dfsg-1_all.deb ...
115s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
115s Selecting previously unselected package r-cran-png.
115s Preparing to unpack .../132-r-cran-png_0.1-8-1build2_arm64.deb ...
115s Unpacking r-cran-png (0.1-8-1build2) ...
115s Selecting previously unselected package r-bioc-zlibbioc.
115s Preparing to unpack .../133-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
115s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
115s Selecting previously unselected package r-bioc-xvector.
115s Preparing to unpack .../134-r-bioc-xvector_0.46.0-2_arm64.deb ...
115s Unpacking r-bioc-xvector (0.46.0-2) ...
115s Selecting previously unselected package r-bioc-ucsc.utils.
115s Preparing to unpack .../135-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
115s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
115s Selecting previously unselected package r-bioc-genomeinfodbdata.
115s Preparing to unpack .../136-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
115s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
115s Selecting previously unselected package r-bioc-genomeinfodb.
115s Preparing to unpack .../137-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
115s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
115s Selecting previously unselected package r-cran-crayon.
115s Preparing to unpack .../138-r-cran-crayon_1.5.3-1_all.deb ...
115s Unpacking r-cran-crayon (1.5.3-1) ...
115s Selecting previously unselected package r-bioc-biostrings.
115s Preparing to unpack .../139-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ...
115s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
115s Selecting previously unselected package r-bioc-keggrest.
115s Preparing to unpack .../140-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ...
115s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ...
115s Selecting previously unselected package r-bioc-annotationdbi.
115s Preparing to unpack .../141-r-bioc-annotationdbi_1.68.0-2_all.deb ...
115s Unpacking r-bioc-annotationdbi (1.68.0-2) ...
115s Selecting previously unselected package r-cran-xml.
115s Preparing to unpack .../142-r-cran-xml_3.99-0.18-1_arm64.deb ...
115s Unpacking r-cran-xml (3.99-0.18-1) ...
116s Selecting previously unselected package r-cran-xtable.
116s Preparing to unpack .../143-r-cran-xtable_1%3a1.8-4-2_all.deb ...
116s Unpacking r-cran-xtable (1:1.8-4-2) ...
116s Selecting previously unselected package r-bioc-annotate.
116s Preparing to unpack .../144-r-bioc-annotate_1.84.0+dfsg-2_all.deb ...
116s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ...
116s Selecting previously unselected package r-bioc-biocio.
116s Preparing to unpack .../145-r-bioc-biocio_1.16.0+dfsg-2_all.deb ...
116s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ...
116s Selecting previously unselected package r-cran-formatr.
116s Preparing to unpack .../146-r-cran-formatr_1.14-2_all.deb ...
116s Unpacking r-cran-formatr (1.14-2) ...
116s Selecting previously unselected package r-cran-lambda.r.
116s Preparing to unpack .../147-r-cran-lambda.r_1.2.4-2build1_all.deb ...
116s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
116s Selecting previously unselected package r-cran-futile.options.
116s Preparing to unpack .../148-r-cran-futile.options_1.0.1-3build1_all.deb ...
116s Unpacking r-cran-futile.options (1.0.1-3build1) ...
116s Selecting previously unselected package r-cran-futile.logger.
116s Preparing to unpack .../149-r-cran-futile.logger_1.4.3-4build1_all.deb ...
116s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
116s Selecting previously unselected package r-cran-snow.
116s Preparing to unpack .../150-r-cran-snow_1%3a0.4.4-2_all.deb ...
116s Unpacking r-cran-snow (1:0.4.4-2) ...
116s Selecting previously unselected package r-cran-codetools.
116s Preparing to unpack .../151-r-cran-codetools_0.2-20-1_all.deb ...
116s Unpacking r-cran-codetools (0.2-20-1) ...
116s Selecting previously unselected package r-cran-bh.
116s Preparing to unpack .../152-r-cran-bh_1.84.0-1_all.deb ...
116s Unpacking r-cran-bh (1.84.0-1) ...
116s Selecting previously unselected package r-bioc-biocparallel.
116s Preparing to unpack .../153-r-bioc-biocparallel_1.40.0-2_arm64.deb ...
116s Unpacking r-bioc-biocparallel (1.40.0-2) ...
116s Selecting previously unselected package r-bioc-genomicranges.
116s Preparing to unpack .../154-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ...
116s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ...
116s Selecting previously unselected package r-cran-bitops.
116s Preparing to unpack .../155-r-cran-bitops_1.0-9-1_arm64.deb ...
116s Unpacking r-cran-bitops (1.0-9-1) ...
116s Selecting previously unselected package r-bioc-rhtslib.
116s Preparing to unpack .../156-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ...
116s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ...
116s Selecting previously unselected package r-bioc-rsamtools.
116s Preparing to unpack .../157-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ...
116s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ...
116s Selecting previously unselected package r-cran-matrixstats.
116s Preparing to unpack .../158-r-cran-matrixstats_1.5.0-1_arm64.deb ...
116s Unpacking r-cran-matrixstats (1.5.0-1) ...
116s Selecting previously unselected package r-bioc-matrixgenerics.
116s Preparing to unpack .../159-r-bioc-matrixgenerics_1.18.1-1_all.deb ...
116s Unpacking r-bioc-matrixgenerics (1.18.1-1) ...
116s Selecting previously unselected package r-cran-lattice.
116s Preparing to unpack .../160-r-cran-lattice_0.22-7-1_arm64.deb ...
116s Unpacking r-cran-lattice (0.22-7-1) ...
116s Selecting previously unselected package r-cran-matrix.
116s Preparing to unpack .../161-r-cran-matrix_1.7-3-1_arm64.deb ...
116s Unpacking r-cran-matrix (1.7-3-1) ...
116s Selecting previously unselected package r-cran-abind.
116s Preparing to unpack .../162-r-cran-abind_1.4-8-1_all.deb ...
116s Unpacking r-cran-abind (1.4-8-1) ...
117s Selecting previously unselected package r-bioc-s4arrays.
117s Preparing to unpack .../163-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ...
117s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ...
117s Selecting previously unselected package r-bioc-sparsearray.
117s Preparing to unpack .../164-r-bioc-sparsearray_1.6.2+dfsg-2_arm64.deb ...
117s Unpacking r-bioc-sparsearray (1.6.2+dfsg-2) ...
117s Selecting previously unselected package r-bioc-delayedarray.
117s Preparing to unpack .../165-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ...
117s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ...
117s Selecting previously unselected package r-bioc-summarizedexperiment.
117s Preparing to unpack .../166-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ...
117s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
117s Selecting previously unselected package r-bioc-genomicalignments.
117s Preparing to unpack .../167-r-bioc-genomicalignments_1.42.0-2_arm64.deb ...
117s Unpacking r-bioc-genomicalignments (1.42.0-2) ...
117s Selecting previously unselected package r-cran-rcurl.
117s Preparing to unpack .../168-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ...
117s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ...
117s Selecting previously unselected package r-cran-rjson.
117s Preparing to unpack .../169-r-cran-rjson_0.2.23-1_arm64.deb ...
117s Unpacking r-cran-rjson (0.2.23-1) ...
117s Selecting previously unselected package r-cran-yaml.
117s Preparing to unpack .../170-r-cran-yaml_2.3.10-1_arm64.deb ...
117s Unpacking r-cran-yaml (2.3.10-1) ...
117s Selecting previously unselected package r-cran-restfulr.
117s Preparing to unpack .../171-r-cran-restfulr_0.0.15-1_arm64.deb ...
117s Unpacking r-cran-restfulr (0.0.15-1) ...
117s Selecting previously unselected package r-bioc-rtracklayer.
117s Preparing to unpack .../172-r-bioc-rtracklayer_1.66.0-3_arm64.deb ...
117s Unpacking r-bioc-rtracklayer (1.66.0-3) ...
117s Selecting previously unselected package r-bioc-bsgenome.
117s Preparing to unpack .../173-r-bioc-bsgenome_1.74.0-2_all.deb ...
117s Unpacking r-bioc-bsgenome (1.74.0-2) ...
117s Selecting previously unselected package r-cran-survival.
117s Preparing to unpack .../174-r-cran-survival_3.8-3-1_arm64.deb ...
117s Unpacking r-cran-survival (3.8-3-1) ...
117s Selecting previously unselected package r-bioc-genefilter.
117s Preparing to unpack .../175-r-bioc-genefilter_1.88.0-2_arm64.deb ...
117s Unpacking r-bioc-genefilter (1.88.0-2) ...
117s Selecting previously unselected package r-bioc-genomicfeatures.
117s Preparing to unpack .../176-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ...
117s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
117s Selecting previously unselected package r-cran-statmod.
117s Preparing to unpack .../177-r-cran-statmod_1.5.0-1_arm64.deb ...
117s Unpacking r-cran-statmod (1.5.0-1) ...
117s Selecting previously unselected package r-bioc-limma.
117s Preparing to unpack .../178-r-bioc-limma_3.62.2+dfsg-1_arm64.deb ...
117s Unpacking r-bioc-limma (3.62.2+dfsg-1) ...
118s Selecting previously unselected package r-bioc-org.hs.eg.db.
118s Preparing to unpack .../179-r-bioc-org.hs.eg.db_3.20.0-3_all.deb ...
118s Unpacking r-bioc-org.hs.eg.db (3.20.0-3) ...
119s Selecting previously unselected package r-cran-runit.
119s Preparing to unpack .../180-r-cran-runit_0.4.33-1_all.deb ...
119s Unpacking r-cran-runit (0.4.33-1) ...
119s Preparing to unpack .../181-zstd_1.5.7+dfsg-1_arm64.deb ...
119s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ...
119s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
119s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
119s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
119s Setting up libncurses-dev:arm64 (6.5+20250216-2) ...
119s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
119s Setting up libzstd-dev:arm64 (1.5.7+dfsg-1) ...
119s Setting up libxrender1:arm64 (1:0.9.12-1) ...
119s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
119s Setting up gcc-14-base:arm64 (14.2.0-22ubuntu1) ...
119s Setting up libxcb-render0:arm64 (1.17.0-2) ...
119s Setting up libtirpc-common (1.3.6+ds-1) ...
119s Setting up unzip (6.0-28ubuntu6) ...
119s Setting up x11-common (1:7.7+23ubuntu4) ...
120s Setting up libdeflate0:arm64 (1.23-2) ...
120s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
120s Setting up libreadline-dev:arm64 (8.2-6) ...
120s Setting up libgomp1:arm64 (15.1.0-1ubuntu1) ...
120s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
120s Setting up libpcre2-16-0:arm64 (10.45-1) ...
120s Setting up zip (3.0-14ubuntu2) ...
120s Setting up libpcre2-32-0:arm64 (10.45-1) ...
120s Setting up libblas3:arm64 (3.12.1-2) ...
120s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
120s Setting up libpkgconf3:arm64 (1.8.1-4) ...
120s Setting up fonts-dejavu-mono (2.37-8) ...
120s Setting up libmpc3:arm64 (1.3.1-1build2) ...
120s Setting up libatomic1:arm64 (15.1.0-1ubuntu1) ...
120s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
120s Setting up icu-devtools (76.1-1ubuntu2) ...
120s Setting up fonts-dejavu-core (2.37-8) ...
120s Setting up pkgconf-bin (1.8.1-4) ...
120s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
120s Setting up libgfortran5:arm64 (15.1.0-1ubuntu1) ...
120s Setting up libwebp7:arm64 (1.5.0-0.1) ...
120s Setting up liblzma-dev:arm64 (5.6.4-1ubuntu1) ...
120s Setting up libubsan1:arm64 (15.1.0-1ubuntu1) ...
120s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
120s Setting up libpcre2-posix3:arm64 (10.45-1) ...
120s Setting up libhwasan0:arm64 (15.1.0-1ubuntu1) ...
120s Setting up libasan8:arm64 (15.1.0-1ubuntu1) ...
120s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
120s Setting up libthai-data (0.1.29-2build1) ...
120s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
120s Setting up libpaper2:arm64 (2.2.5-0.3) ...
120s Setting up libtsan2:arm64 (15.1.0-1ubuntu1) ...
120s Setting up libisl23:arm64 (0.27-1) ...
120s Setting up libdeflate-dev:arm64 (1.23-2) ...
120s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ...
120s Setting up xdg-utils (1.2.1-2ubuntu1) ...
120s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
120s Setting up zstd (1.5.7+dfsg-1) ...
120s Setting up libcc1-0:arm64 (15.1.0-1ubuntu1) ...
120s Setting up liblsan0:arm64 (15.1.0-1ubuntu1) ...
120s Setting up libblas-dev:arm64 (3.12.1-2) ...
120s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
120s Setting up dctrl-tools (2.24-3build3) ...
120s Setting up libitm1:arm64 (15.1.0-1ubuntu1) ...
120s Setting up libbz2-dev:arm64 (1.0.8-6) ...
120s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
120s Setting up libice6:arm64 (2:1.1.1-1) ...
120s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
120s Setting up liblapack3:arm64 (3.12.1-2) ...
120s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
120s Setting up libpcre2-dev:arm64 (10.45-1) ...
120s Setting up libtirpc3t64:arm64 (1.3.6+ds-1) ...
120s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ...
120s Setting up libpng-dev:arm64 (1.6.47-1.1) ...
120s Setting up libpaper-utils (2.2.5-0.3) ...
120s Setting up pkgconf:arm64 (1.8.1-4) ...
120s Setting up libthai0:arm64 (0.1.29-2build1) ...
120s Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ...
120s Setting up liblapack-dev:arm64 (3.12.1-2) ...
120s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
120s Setting up cpp-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
120s Setting up libtiff6:arm64 (4.7.0-3ubuntu1) ...
120s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ...
120s Setting up libgcc-14-dev:arm64 (14.2.0-22ubuntu1) ...
120s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
120s Setting up libstdc++-14-dev:arm64 (14.2.0-22ubuntu1) ...
120s Setting up libsm6:arm64 (2:1.2.6-1) ...
120s Setting up libgfortran-14-dev:arm64 (14.2.0-22ubuntu1) ...
120s Setting up fontconfig (2.15.0-2.2ubuntu1) ...
122s Regenerating fonts cache... done.
122s Setting up libxft2:arm64 (2.3.6-1build1) ...
122s Setting up libboost1.83-dev:arm64 (1.83.0-4.2ubuntu1) ...
122s Setting up libtk8.6:arm64 (8.6.16-1) ...
122s Setting up libpango-1.0-0:arm64 (1.56.3-1) ...
122s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
122s Setting up libcairo2:arm64 (1.18.4-1) ...
122s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
122s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
122s Setting up cpp-14 (14.2.0-22ubuntu1) ...
122s Setting up cpp (4:14.2.0-1ubuntu1) ...
122s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ...
122s Setting up gcc-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
122s Setting up libpangoft2-1.0-0:arm64 (1.56.3-1) ...
122s Setting up libpangocairo-1.0-0:arm64 (1.56.3-1) ...
122s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
122s Setting up g++-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
122s Setting up gcc-14 (14.2.0-22ubuntu1) ...
122s Setting up r-base-core (4.5.0-3) ...
122s Creating config file /etc/R/Renviron with new version
122s Setting up r-cran-crayon (1.5.3-1) ...
122s Setting up r-cran-futile.options (1.0.1-3build1) ...
122s Setting up r-cran-lattice (0.22-7-1) ...
122s Setting up r-cran-formatr (1.14-2) ...
122s Setting up r-cran-xml (3.99-0.18-1) ...
122s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
122s Setting up r-cran-statmod (1.5.0-1) ...
122s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
122s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
122s Setting up g++-14 (14.2.0-22ubuntu1) ...
122s Setting up r-cran-rjson (0.2.23-1) ...
122s Setting up r-cran-r6 (2.6.1-1) ...
122s Setting up gfortran-14 (14.2.0-22ubuntu1) ...
122s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
122s Setting up r-cran-bh (1.84.0-1) ...
122s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
122s Setting up r-cran-codetools (0.2-20-1) ...
122s Setting up r-bioc-biocgenerics (0.52.0-2) ...
122s Setting up r-cran-rlang (1.1.5-3) ...
122s Setting up r-cran-matrixstats (1.5.0-1) ...
122s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
122s Setting up r-cran-sys (3.4.3-1) ...
122s Setting up r-cran-plogr (0.2.0-3build1) ...
122s Setting up r-cran-mime (0.12-2) ...
122s Setting up r-cran-abind (1.4-8-1) ...
122s Setting up r-cran-yaml (2.3.10-1) ...
122s Setting up r-cran-lambda.r (1.2.4-2build1) ...
122s Setting up r-cran-dbi (1.2.3-1) ...
122s Setting up r-cran-snow (1:0.4.4-2) ...
122s Setting up r-cran-glue (1.8.0-1) ...
122s Setting up r-cran-bit (4.6.0+dfsg-1) ...
122s Setting up r-cran-xtable (1:1.8-4-2) ...
122s Setting up r-cran-cli (3.6.4-1) ...
122s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
122s Setting up r-cran-bitops (1.0-9-1) ...
122s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ...
122s Setting up gcc (4:14.2.0-1ubuntu1) ...
122s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
122s Setting up r-cran-askpass (1.2.1-1) ...
122s Setting up r-cran-fastmap (1.2.0-1) ...
122s Setting up r-cran-png (0.1-8-1build2) ...
122s Setting up r-bioc-biobase (2.66.0-2) ...
122s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
122s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
122s Setting up r-cran-cpp11 (0.5.2-1) ...
122s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
122s Setting up r-cran-runit (0.4.33-1) ...
122s Setting up r-cran-futile.logger (1.4.3-4build1) ...
122s Setting up r-bioc-limma (3.62.2+dfsg-1) ...
122s Setting up r-cran-matrix (1.7-3-1) ...
122s Setting up g++ (4:14.2.0-1ubuntu1) ...
122s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
122s Setting up r-cran-cachem (1.1.0-1) ...
122s Setting up build-essential (12.12ubuntu1) ...
122s Setting up r-bioc-iranges (2.40.1-3) ...
122s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
122s Setting up r-cran-restfulr (0.0.15-1) ...
122s Setting up r-cran-vctrs (0.6.5-1) ...
122s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
122s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
122s Setting up r-bioc-biocparallel (1.40.0-2) ...
122s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
122s Setting up r-cran-survival (3.8-3-1) ...
122s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
122s Setting up gfortran (4:14.2.0-1ubuntu1) ...
122s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
122s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
122s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
122s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
122s Setting up r-cran-httr (1.4.7+dfsg-1) ...
122s Setting up r-cran-memoise (2.0.1-1) ...
122s Setting up r-cran-blob (1.2.4-1) ...
122s Setting up r-bioc-xvector (0.46.0-2) ...
122s Setting up r-cran-rsqlite (2.3.9-1) ...
122s Setting up r-base-dev (4.5.0-3) ...
122s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
122s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ...
122s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
122s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
122s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
122s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
122s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
122s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
122s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
122s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ...
122s Setting up r-bioc-annotationdbi (1.68.0-2) ...
122s Setting up r-bioc-annotate (1.84.0+dfsg-2) ...
122s Setting up r-bioc-genefilter (1.88.0-2) ...
122s Setting up r-bioc-genomicalignments (1.42.0-2) ...
122s Setting up r-bioc-org.hs.eg.db (3.20.0-3) ...
122s Setting up r-bioc-rtracklayer (1.66.0-3) ...
122s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
122s Setting up r-bioc-bsgenome (1.74.0-2) ...
122s Processing triggers for libc-bin (2.41-6ubuntu1) ...
122s Processing triggers for man-db (2.13.0-1) ...
123s Processing triggers for install-info (7.1.1-1) ...
124s autopkgtest [14:49:32]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
124s autopkgtest [14:49:32]: test pkg-r-autopkgtest: [-----------------------
125s Test: Try to load the R library rtracklayer
125s 
125s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
125s Copyright (C) 2025 The R Foundation for Statistical Computing
125s Platform: aarch64-unknown-linux-gnu
125s 
125s R is free software and comes with ABSOLUTELY NO WARRANTY.
125s You are welcome to redistribute it under certain conditions.
125s Type 'license()' or 'licence()' for distribution details.
125s 
125s R is a collaborative project with many contributors.
125s Type 'contributors()' for more information and
125s 'citation()' on how to cite R or R packages in publications.
125s 
125s Type 'demo()' for some demos, 'help()' for on-line help, or
125s 'help.start()' for an HTML browser interface to help.
125s Type 'q()' to quit R.
125s 
125s > library('rtracklayer')
125s Loading required package: GenomicRanges
125s Loading required package: stats4
125s Loading required package: BiocGenerics
125s 
125s Attaching package: ‘BiocGenerics’
125s 
125s The following objects are masked from ‘package:stats’:
125s 
125s     IQR, mad, sd, var, xtabs
125s 
125s The following objects are masked from ‘package:base’:
125s 
125s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
125s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
125s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
125s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
125s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
125s     table, tapply, union, unique, unsplit, which.max, which.min
125s 
125s Loading required package: S4Vectors
126s 
126s Attaching package: ‘S4Vectors’
126s 
126s The following object is masked from ‘package:utils’:
126s 
126s     findMatches
126s 
126s The following objects are masked from ‘package:base’:
126s 
126s     expand.grid, I, unname
126s 
126s Loading required package: IRanges
126s Loading required package: GenomeInfoDb
132s > 
132s Other tests are currently unsupported!
132s They will be progressively added.
133s autopkgtest [14:49:41]: test pkg-r-autopkgtest: -----------------------]
133s pkg-r-autopkgtest    PASS
133s autopkgtest [14:49:41]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
133s autopkgtest [14:49:41]: @@@@@@@@@@@@@@@@@@@@ summary
133s pkg-r-autopkgtest    PASS
137s nova [W] Using flock in prodstack7-arm64
137s Creating nova instance adt-questing-arm64-r-bioc-rtracklayer-20250502-143958-juju-7f2275-prod-proposed-migration-environment-20-93663ece-f9cb-4c31-8402-6fb9dfa73e7f from image adt/ubuntu-questing-arm64-server-20250502.img (UUID 8e5d326b-32f5-49da-83ce-e406e786e537)...
137s nova [W] Timed out waiting for 037508f2-d08c-4dd8-ab01-9b4112d3611a to get deleted.