0s autopkgtest [10:40:59]: starting date and time: 2025-05-02 10:40:59+0000
  0s autopkgtest [10:40:59]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [10:40:59]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x_e86n1a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:nlme --apt-upgrade r-bioc-qusage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=nlme/3.1.168-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-8.secgroup --name adt-questing-arm64-r-bioc-qusage-20250502-104059-juju-7f2275-prod-proposed-migration-environment-15-909feee5-9b46-4540-a9eb-c894e0caa691 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
157s autopkgtest [10:43:36]: testbed dpkg architecture: arm64
157s autopkgtest [10:43:36]: testbed apt version: 3.0.0
157s autopkgtest [10:43:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup
158s autopkgtest [10:43:37]: testbed release detected to be: None
158s autopkgtest [10:43:37]: updating testbed package index (apt update)
159s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
159s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
159s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
159s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
159s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB]
159s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB]
159s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB]
159s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [219 kB]
159s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1509 kB]
160s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB]
160s Fetched 4149 kB in 1s (3330 kB/s)
161s Reading package lists...
162s autopkgtest [10:43:41]: upgrading testbed (apt dist-upgrade and autopurge)
162s Reading package lists...
162s Building dependency tree...
162s Reading state information...
163s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
163s Starting 2 pkgProblemResolver with broken count: 0
163s Done
164s Entering ResolveByKeep
164s 
164s Calculating upgrade...
165s The following packages will be upgraded:
165s   htop mtd-utils nano
165s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
165s Need to get 936 kB of archives.
165s After this operation, 727 kB of additional disk space will be used.
165s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB]
165s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB]
165s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB]
166s Fetched 936 kB in 1s (1643 kB/s)
166s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117820 files and directories currently installed.)
166s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ...
166s Unpacking nano (8.4-1) over (8.3-1) ...
166s Preparing to unpack .../htop_3.4.1-4_arm64.deb ...
166s Unpacking htop (3.4.1-4) over (3.4.0-2) ...
166s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ...
166s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ...
166s Setting up htop (3.4.1-4) ...
166s Setting up mtd-utils (1:2.3.0-1ubuntu1) ...
166s Setting up nano (8.4-1) ...
166s Installing new version of config file /etc/nanorc ...
166s Processing triggers for man-db (2.13.0-1) ...
168s Processing triggers for install-info (7.1.1-1) ...
168s Reading package lists...
169s Building dependency tree...
169s Reading state information...
169s Starting pkgProblemResolver with broken count: 0
169s Starting 2 pkgProblemResolver with broken count: 0
169s Done
170s Solving dependencies...
170s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
173s autopkgtest [10:43:52]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr  6 14:37:51 UTC 2025
173s autopkgtest [10:43:52]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-qusage
176s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (dsc) [2129 B]
176s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (tar) [10.1 MB]
176s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-qusage 2.40.0-2 (diff) [3532 B]
176s gpgv: Signature made Sun Jan 12 02:53:53 2025 UTC
176s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
176s gpgv:                issuer "crusoe@debian.org"
176s gpgv: Can't check signature: No public key
176s dpkg-source: warning: cannot verify inline signature for ./r-bioc-qusage_2.40.0-2.dsc: no acceptable signature found
176s autopkgtest [10:43:55]: testing package r-bioc-qusage version 2.40.0-2
178s autopkgtest [10:43:57]: build not needed
182s autopkgtest [10:44:01]: test pkg-r-autopkgtest: preparing testbed
182s Reading package lists...
183s Building dependency tree...
183s Reading state information...
183s Starting pkgProblemResolver with broken count: 0
183s Starting 2 pkgProblemResolver with broken count: 0
183s Done
184s The following NEW packages will be installed:
184s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
184s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
184s   g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
184s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
184s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
184s   libasan8 libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1
184s   libdeflate-dev libdeflate0 libfftw3-double3 libfontconfig1 libgcc-14-dev
184s   libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
184s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
184s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
184s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev
184s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
184s   libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
184s   libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsharpyuv0 libsm6
184s   libstdc++-14-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev
184s   libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2
184s   libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
184s   r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-limma
184s   r-bioc-qusage r-cran-emmeans r-cran-estimability r-cran-fftw r-cran-lattice
184s   r-cran-mvtnorm r-cran-nlme r-cran-numderiv r-cran-statmod unzip x11-common
184s   xdg-utils zip zlib1g-dev
184s 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded.
184s Need to get 153 MB of archives.
184s After this operation, 442 MB of additional disk space will be used.
184s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB]
185s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
185s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [10.6 MB]
187s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14 arm64 14.2.0-19ubuntu2 [1026 B]
187s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
187s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
187s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 libcc1-0 arm64 15-20250404-0ubuntu1 [49.1 kB]
187s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB]
187s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libitm1 arm64 15-20250404-0ubuntu1 [27.8 kB]
187s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libasan8 arm64 15-20250404-0ubuntu1 [2922 kB]
187s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 liblsan0 arm64 15-20250404-0ubuntu1 [1318 kB]
188s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libtsan2 arm64 15-20250404-0ubuntu1 [2692 kB]
188s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libubsan1 arm64 15-20250404-0ubuntu1 [1177 kB]
188s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libhwasan0 arm64 15-20250404-0ubuntu1 [1640 kB]
188s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libgcc-14-dev arm64 14.2.0-19ubuntu2 [2593 kB]
188s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [20.9 MB]
190s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14 arm64 14.2.0-19ubuntu2 [529 kB]
190s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
190s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
190s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libstdc++-14-dev arm64 14.2.0-19ubuntu2 [2501 kB]
190s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [12.1 MB]
190s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 g++-14 arm64 14.2.0-19ubuntu2 [23.0 kB]
190s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
190s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
190s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 build-essential arm64 12.12ubuntu1 [5082 B]
190s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
190s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
190s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
190s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB]
190s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB]
190s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig arm64 2.15.0-2.2ubuntu1 [191 kB]
190s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB]
190s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran-14-dev arm64 14.2.0-19ubuntu2 [498 kB]
190s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [11.4 MB]
190s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14 arm64 14.2.0-19ubuntu2 [14.2 kB]
190s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
190s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
190s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
190s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
190s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
190s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
190s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
190s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
190s Get:44 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
190s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
190s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB]
190s Get:47 http://ftpmaster.internal/ubuntu questing/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
190s Get:48 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
190s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
190s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB]
190s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
190s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
190s Get:53 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB]
190s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
190s Get:55 http://ftpmaster.internal/ubuntu questing/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
191s Get:56 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
191s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
191s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
191s Get:59 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
191s Get:60 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
191s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
191s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
191s Get:63 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
191s Get:64 http://ftpmaster.internal/ubuntu questing/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
191s Get:65 http://ftpmaster.internal/ubuntu questing/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
191s Get:66 http://ftpmaster.internal/ubuntu questing/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
191s Get:67 http://ftpmaster.internal/ubuntu questing/main arm64 libpango-1.0-0 arm64 1.56.3-1 [238 kB]
191s Get:68 http://ftpmaster.internal/ubuntu questing/main arm64 libpangoft2-1.0-0 arm64 1.56.3-1 [49.8 kB]
191s Get:69 http://ftpmaster.internal/ubuntu questing/main arm64 libpangocairo-1.0-0 arm64 1.56.3-1 [27.6 kB]
191s Get:70 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
191s Get:71 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
191s Get:72 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
191s Get:73 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
191s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
191s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
191s Get:76 http://ftpmaster.internal/ubuntu questing/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
191s Get:77 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
191s Get:78 http://ftpmaster.internal/ubuntu questing/main arm64 libpng-dev arm64 1.6.47-1.1 [269 kB]
191s Get:79 http://ftpmaster.internal/ubuntu questing/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
191s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
191s Get:81 http://ftpmaster.internal/ubuntu questing/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
191s Get:82 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
191s Get:83 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
191s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
191s Get:85 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
191s Get:86 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
191s Get:87 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
191s Get:88 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
191s Get:89 http://ftpmaster.internal/ubuntu questing/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
191s Get:90 http://ftpmaster.internal/ubuntu questing/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
191s Get:91 http://ftpmaster.internal/ubuntu questing/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
191s Get:92 http://ftpmaster.internal/ubuntu questing/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
191s Get:93 http://ftpmaster.internal/ubuntu questing/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB]
193s Get:94 http://ftpmaster.internal/ubuntu questing/main arm64 liblzma-dev arm64 5.6.4-1ubuntu1 [180 kB]
193s Get:95 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
193s Get:96 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
193s Get:97 http://ftpmaster.internal/ubuntu questing/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
193s Get:98 http://ftpmaster.internal/ubuntu questing/universe arm64 r-base-dev all 4.4.3-1 [4176 B]
193s Get:99 http://ftpmaster.internal/ubuntu questing/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
193s Get:100 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
193s Get:101 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB]
193s Get:102 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB]
195s Get:103 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB]
195s Get:104 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
195s Get:105 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-nlme arm64 3.1.168-1 [2310 kB]
195s Get:106 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-estimability all 1.5.1-1 [50.9 kB]
195s Get:107 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-numderiv all 2016.8-1.1-3 [115 kB]
195s Get:108 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-mvtnorm arm64 1.3-3-1 [921 kB]
195s Get:109 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-emmeans all 1.10.7+dfsg-1 [1665 kB]
195s Get:110 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-fftw arm64 1.0-9-1 [19.5 kB]
195s Get:111 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-qusage all 2.40.0-2 [10.2 MB]
195s Preconfiguring packages ...
195s Fetched 153 MB in 10s (14.6 MB/s)
195s Selecting previously unselected package libisl23:arm64.
195s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117821 files and directories currently installed.)
195s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ...
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195s Selecting previously unselected package libmpc3:arm64.
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202s Selecting previously unselected package libpango-1.0-0:arm64.
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209s Creating config file /etc/R/Renviron with new version
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209s Setting up r-cran-estimability (1.5.1-1) ...
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209s Setting up gcc (4:14.2.0-1ubuntu1) ...
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209s Setting up r-bioc-limma (3.62.2+dfsg-1) ...
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209s Setting up gfortran (4:14.2.0-1ubuntu1) ...
209s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
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209s Setting up r-base-dev (4.4.3-1) ...
209s Setting up r-bioc-qusage (2.40.0-2) ...
209s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
209s Processing triggers for libc-bin (2.41-6ubuntu1) ...
209s Processing triggers for man-db (2.13.0-1) ...
210s Processing triggers for install-info (7.1.1-1) ...
211s autopkgtest [10:44:30]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
211s autopkgtest [10:44:30]: test pkg-r-autopkgtest: [-----------------------
212s Test: Try to load the R library qusage
212s 
212s R version 4.4.3 (2025-02-28) -- "Trophy Case"
212s Copyright (C) 2025 The R Foundation for Statistical Computing
212s Platform: aarch64-unknown-linux-gnu
212s 
212s R is free software and comes with ABSOLUTELY NO WARRANTY.
212s You are welcome to redistribute it under certain conditions.
212s Type 'license()' or 'licence()' for distribution details.
212s 
212s R is a collaborative project with many contributors.
212s Type 'contributors()' for more information and
212s 'citation()' on how to cite R or R packages in publications.
212s 
212s Type 'demo()' for some demos, 'help()' for on-line help, or
212s 'help.start()' for an HTML browser interface to help.
212s Type 'q()' to quit R.
212s 
212s > library('qusage')
212s Loading required package: limma
213s > 
213s > 
213s Other tests are currently unsupported!
213s They will be progressively added.
213s autopkgtest [10:44:32]: test pkg-r-autopkgtest: -----------------------]
214s autopkgtest [10:44:32]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
214s pkg-r-autopkgtest    PASS
214s autopkgtest [10:44:33]: @@@@@@@@@@@@@@@@@@@@ summary
214s pkg-r-autopkgtest    PASS
231s nova [W] Using flock in prodstack6-arm64
231s Creating nova instance adt-questing-arm64-r-bioc-qusage-20250502-104059-juju-7f2275-prod-proposed-migration-environment-15-909feee5-9b46-4540-a9eb-c894e0caa691 from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)...
231s nova [W] Timed out waiting for 9d84b16d-d15f-479a-aa5f-081cbfb3e5e2 to get deleted.