0s autopkgtest [14:37:19]: starting date and time: 2025-05-02 14:37:19+0000
  0s autopkgtest [14:37:19]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [14:37:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ca26of2u/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck --apt-upgrade r-bioc-grohmm --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-12.secgroup --name adt-questing-arm64-r-bioc-grohmm-20250502-143719-juju-7f2275-prod-proposed-migration-environment-2-885a41db-1f99-44ab-b689-0eec930ad47d --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
258s autopkgtest [14:41:37]: testbed dpkg architecture: arm64
258s autopkgtest [14:41:37]: testbed apt version: 3.0.0
259s autopkgtest [14:41:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup
260s autopkgtest [14:41:39]: testbed release detected to be: None
261s autopkgtest [14:41:40]: updating testbed package index (apt update)
262s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
262s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
262s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
262s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
263s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [164 kB]
263s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2024 kB]
263s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.2 kB]
263s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [204 kB]
263s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1467 kB]
263s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [14.8 kB]
263s Fetched 4028 kB in 1s (3153 kB/s)
264s Reading package lists...
266s autopkgtest [14:41:45]: upgrading testbed (apt dist-upgrade and autopurge)
266s Reading package lists...
266s Building dependency tree...
266s Reading state information...
267s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
267s Starting 2 pkgProblemResolver with broken count: 0
267s Done
267s Entering ResolveByKeep
268s 
268s Calculating upgrade...
268s The following packages will be upgraded:
268s   fwupd htop libftdi1-2 libfwupd3 libnpth0t64 libsensors-config libsensors5
268s   liburcu8t64 mokutil mtd-utils nano usb.ids
269s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
269s Need to get 6772 kB of archives.
269s After this operation, 736 kB of additional disk space will be used.
269s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 libnpth0t64 arm64 1.8-3 [8818 B]
269s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 libsensors-config all 1:3.6.2-2 [6756 B]
269s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libsensors5 arm64 1:3.6.2-2 [28.9 kB]
269s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 liburcu8t64 arm64 0.15.2-2 [64.2 kB]
269s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB]
269s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 usb.ids all 2025.04.01-1 [223 kB]
269s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 fwupd arm64 2.0.8-3 [5315 kB]
269s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 libfwupd3 arm64 2.0.8-3 [131 kB]
269s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB]
269s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libftdi1-2 arm64 1.5-10 [30.6 kB]
269s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 mokutil arm64 0.7.2-1 [28.4 kB]
269s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB]
271s Fetched 6772 kB in 1s (8115 kB/s)
271s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117820 files and directories currently installed.)
271s Preparing to unpack .../libnpth0t64_1.8-3_arm64.deb ...
271s Unpacking libnpth0t64:arm64 (1.8-3) over (1.8-2) ...
272s Setting up libnpth0t64:arm64 (1.8-3) ...
272s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117820 files and directories currently installed.)
272s Preparing to unpack .../00-libsensors-config_1%3a3.6.2-2_all.deb ...
272s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ...
274s Preparing to unpack .../01-libsensors5_1%3a3.6.2-2_arm64.deb ...
274s Unpacking libsensors5:arm64 (1:3.6.2-2) over (1:3.6.0-10) ...
275s Preparing to unpack .../02-liburcu8t64_0.15.2-2_arm64.deb ...
275s Unpacking liburcu8t64:arm64 (0.15.2-2) over (0.15.1-1) ...
277s Preparing to unpack .../03-nano_8.4-1_arm64.deb ...
277s Unpacking nano (8.4-1) over (8.3-1) ...
278s Preparing to unpack .../04-usb.ids_2025.04.01-1_all.deb ...
278s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ...
279s Preparing to unpack .../05-fwupd_2.0.8-3_arm64.deb ...
280s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ...
281s Preparing to unpack .../06-libfwupd3_2.0.8-3_arm64.deb ...
281s Unpacking libfwupd3:arm64 (2.0.8-3) over (2.0.7-1) ...
282s Preparing to unpack .../07-htop_3.4.1-4_arm64.deb ...
282s Unpacking htop (3.4.1-4) over (3.4.0-2) ...
283s Preparing to unpack .../08-libftdi1-2_1.5-10_arm64.deb ...
283s Unpacking libftdi1-2:arm64 (1.5-10) over (1.5-8build1) ...
284s Preparing to unpack .../09-mokutil_0.7.2-1_arm64.deb ...
284s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ...
284s Preparing to unpack .../10-mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ...
284s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ...
285s Setting up liburcu8t64:arm64 (0.15.2-2) ...
285s Setting up mokutil (0.7.2-1) ...
285s Setting up htop (3.4.1-4) ...
285s Setting up libsensors-config (1:3.6.2-2) ...
285s Installing new version of config file /etc/sensors3.conf ...
285s Setting up libfwupd3:arm64 (2.0.8-3) ...
285s Setting up mtd-utils (1:2.3.0-1ubuntu1) ...
285s Setting up libftdi1-2:arm64 (1.5-10) ...
285s Setting up usb.ids (2025.04.01-1) ...
285s Setting up libsensors5:arm64 (1:3.6.2-2) ...
285s Setting up nano (8.4-1) ...
285s Installing new version of config file /etc/nanorc ...
285s Setting up fwupd (2.0.8-3) ...
287s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
287s fwupd.service is a disabled or a static unit not running, not starting it.
287s Processing triggers for man-db (2.13.0-1) ...
289s Processing triggers for dbus (1.16.2-2ubuntu1) ...
289s Processing triggers for install-info (7.1.1-1) ...
289s Processing triggers for libc-bin (2.41-6ubuntu1) ...
290s Reading package lists...
290s Building dependency tree...
290s Reading state information...
291s Starting pkgProblemResolver with broken count: 0
291s Starting 2 pkgProblemResolver with broken count: 0
291s Done
291s Solving dependencies...
292s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
292s autopkgtest [14:42:11]: rebooting testbed after setup commands that affected boot
298s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
331s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
355s autopkgtest [14:43:14]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr  6 14:37:51 UTC 2025
360s autopkgtest [14:43:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-grohmm
364s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-grohmm 1.40.3-2 (dsc) [2214 B]
364s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-grohmm 1.40.3-2 (tar) [4365 kB]
364s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-grohmm 1.40.3-2 (diff) [3640 B]
364s gpgv: Signature made Mon Jan 13 20:23:01 2025 UTC
364s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
364s gpgv:                issuer "crusoe@debian.org"
364s gpgv: Can't check signature: No public key
364s dpkg-source: warning: cannot verify inline signature for ./r-bioc-grohmm_1.40.3-2.dsc: no acceptable signature found
365s autopkgtest [14:43:24]: testing package r-bioc-grohmm version 1.40.3-2
365s autopkgtest [14:43:24]: build not needed
367s autopkgtest [14:43:26]: test pkg-r-autopkgtest: preparing testbed
367s Reading package lists...
367s Building dependency tree...
367s Reading state information...
368s Starting pkgProblemResolver with broken count: 27
368s Starting 2 pkgProblemResolver with broken count: 27
368s Investigating (0) r-cran-shiny:arm64 < none -> 1.10.0+dfsg-2 @un puN Ib >
368s Broken r-cran-shiny:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 0.4.10)
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-shiny:arm64 66
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-shiny:arm64 66
368s Investigating (0) r-cran-sass:arm64 < none -> 0.4.9+dfsg-1 @un puN Ib >
368s Broken r-cran-sass:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 0.4.10)
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-sass:arm64 62
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-sass:arm64 62
368s Investigating (0) r-cran-bslib:arm64 < none -> 0.9.0+dfsg-1syncable1 @un puN Ib >
368s Broken r-cran-bslib:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-bslib:arm64 59
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-bslib:arm64 59
368s Investigating (0) r-cran-htmltools:arm64 < none -> 0.5.8.1-1 @un puN Ib >
368s Broken r-cran-htmltools:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 1.0.0)
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-htmltools:arm64 49
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-htmltools:arm64 49
368s Investigating (0) r-cran-vctrs:arm64 < none -> 0.6.5-1 @un puN Ib >
368s Broken r-cran-vctrs:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 1.1.0)
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-vctrs:arm64 44
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-vctrs:arm64 44
368s Investigating (0) r-cran-fontawesome:arm64 < none -> 0.5.3-1 @un puN Ib >
368s Broken r-cran-fontawesome:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 1.0.6)
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-fontawesome:arm64 34
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-fontawesome:arm64 34
368s Investigating (0) r-cran-rsqlite:arm64 < none -> 2.3.9-1 @un puN Ib >
368s Broken r-cran-rsqlite:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-rsqlite:arm64 23
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-rsqlite:arm64 23
368s Investigating (0) r-cran-later:arm64 < none -> 1.4.1+dfsg-1 @un puN Ib >
368s Broken r-cran-later:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-later:arm64 20
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-later:arm64 20
368s Investigating (0) r-bioc-genomeinfodb:arm64 < none -> 1.42.3+dfsg-1 @un puN Ib >
368s Broken r-bioc-genomeinfodb:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.13.12)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomeinfodb:arm64 20
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomeinfodb:arm64 20
368s Investigating (0) r-cran-lifecycle:arm64 < none -> 1.0.4+dfsg-1 @un puN Ib >
368s Broken r-cran-lifecycle:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 1.1.0)
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-lifecycle:arm64 17
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-lifecycle:arm64 17
368s Investigating (0) r-bioc-xvector:arm64 < none -> 0.46.0-2 @un puN Ib >
368s Broken r-bioc-xvector:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.23.9)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-xvector:arm64 17
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-xvector:arm64 17
368s Investigating (0) r-cran-cachem:arm64 < none -> 1.1.0-1 @un puN Ib >
368s Broken r-cran-cachem:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-cachem:arm64 12
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-cachem:arm64 12
368s Investigating (0) r-cran-promises:arm64 < none -> 1.3.2+dfsg-1 @un puN Ib >
368s Broken r-cran-promises:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-promises:arm64 9
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-promises:arm64 9
368s Investigating (0) r-bioc-genomicranges:arm64 < none -> 1.58.0+dfsg-2 @un puN Ib >
368s Broken r-bioc-genomicranges:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.37.1)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicranges:arm64 9
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicranges:arm64 9
368s Investigating (0) r-bioc-biostrings:arm64 < none -> 2.74.1+dfsg-2 @un puN Ib >
368s Broken r-bioc-biostrings:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.31.2)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-biostrings:arm64 8
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-biostrings:arm64 8
368s Investigating (0) r-cran-memoise:arm64 < none -> 2.0.1-1 @un puN Ib >
368s Broken r-cran-memoise:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 0.4.10)
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-memoise:arm64 6
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-memoise:arm64 6
368s Investigating (0) r-bioc-rsamtools:arm64 < none -> 2.22.0+dfsg-2 @un puN Ib >
368s Broken r-bioc-rsamtools:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.13.12)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-rsamtools:arm64 3
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-rsamtools:arm64 3
368s Investigating (0) r-bioc-annotationdbi:arm64 < none -> 1.68.0-2 @un puN Ib >
368s Broken r-bioc-annotationdbi:arm64 Depends on r-bioc-iranges:arm64 < none @un pH >
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-annotationdbi:arm64 3
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-annotationdbi:arm64 3
368s Investigating (0) r-cran-blob:arm64 < none -> 1.2.4-1 @un puN Ib >
368s Broken r-cran-blob:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-blob:arm64 2
368s   Considering r-cran-rlang:arm64 10 as a solution to r-cran-blob:arm64 2
368s Investigating (0) r-bioc-rtracklayer:arm64 < none -> 1.66.0-2 @un puN Ib >
368s Broken r-bioc-rtracklayer:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.13.13)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-rtracklayer:arm64 2
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-rtracklayer:arm64 2
368s Investigating (0) r-bioc-genomicalignments:arm64 < none -> 1.42.0-2 @un puN Ib >
368s Broken r-bioc-genomicalignments:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.23.9)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicalignments:arm64 2
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicalignments:arm64 2
368s Investigating (0) r-bioc-s4arrays:arm64 < none -> 1.6.0+dfsg-2 @un puN Ib >
368s Broken r-bioc-s4arrays:arm64 Depends on r-bioc-iranges:arm64 < none @un pH >
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-s4arrays:arm64 2
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-s4arrays:arm64 2
368s Investigating (0) r-bioc-summarizedexperiment:arm64 < none -> 1.36.0+dfsg-2 @un puN Ib >
368s Broken r-bioc-summarizedexperiment:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.23.9)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-summarizedexperiment:arm64 1
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-summarizedexperiment:arm64 1
368s Investigating (0) r-bioc-genomicfeatures:arm64 < none -> 1.58.0+dfsg-2 @un puN Ib >
368s Broken r-bioc-genomicfeatures:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.37.1)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicfeatures:arm64 1
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-genomicfeatures:arm64 1
368s Investigating (0) r-bioc-delayedarray:arm64 < none -> 0.32.0+dfsg-2 @un puN Ib >
368s Broken r-bioc-delayedarray:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.17.3)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-delayedarray:arm64 0
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-delayedarray:arm64 0
368s Investigating (0) r-bioc-sparsearray:arm64 < none -> 1.6.2+dfsg-1 @un puN Ib >
368s Broken r-bioc-sparsearray:arm64 Depends on r-bioc-iranges:arm64 < none @un pH >
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-sparsearray:arm64 0
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-sparsearray:arm64 0
368s Investigating (0) r-bioc-grohmm:arm64 < none -> 1.40.3-2 @un puN Ib >
368s Broken r-bioc-grohmm:arm64 Depends on r-bioc-iranges:arm64 < none @un pH > (>= 2.13.12)
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-grohmm:arm64 0
368s   Considering r-bioc-iranges:arm64 3 as a solution to r-bioc-grohmm:arm64 0
368s Done
368s Some packages could not be installed. This may mean that you have
368s requested an impossible situation or if you are using the unstable
368s distribution that some required packages have not yet been created
368s or been moved out of Incoming.
368s The following information may help to resolve the situation:
368s 
368s The following packages have unmet dependencies:
368s  r-bioc-annotationdbi : Depends: r-bioc-iranges but it is not installable
368s  r-bioc-biostrings : Depends: r-bioc-iranges (>= 2.31.2) but it is not installable
368s  r-bioc-delayedarray : Depends: r-bioc-iranges (>= 2.17.3) but it is not installable
368s  r-bioc-genomeinfodb : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable
368s  r-bioc-genomicalignments : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
368s  r-bioc-genomicfeatures : Depends: r-bioc-iranges (>= 2.37.1) but it is not installable
368s  r-bioc-genomicranges : Depends: r-bioc-iranges (>= 2.37.1) but it is not installable
368s  r-bioc-grohmm : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable
368s  r-bioc-rsamtools : Depends: r-bioc-iranges (>= 2.13.12) but it is not installable
368s  r-bioc-rtracklayer : Depends: r-bioc-iranges (>= 2.13.13) but it is not installable
368s  r-bioc-s4arrays : Depends: r-bioc-iranges but it is not installable
368s  r-bioc-sparsearray : Depends: r-bioc-iranges but it is not installable
368s  r-bioc-summarizedexperiment : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
368s  r-bioc-xvector : Depends: r-bioc-iranges (>= 2.23.9) but it is not installable
368s  r-cran-blob : Depends: r-cran-rlang but it is not installable
368s  r-cran-bslib : Depends: r-cran-rlang but it is not installable
368s  r-cran-cachem : Depends: r-cran-rlang but it is not installable
368s  r-cran-fontawesome : Depends: r-cran-rlang (>= 1.0.6) but it is not installable
368s  r-cran-htmltools : Depends: r-cran-rlang (>= 1.0.0) but it is not installable
368s  r-cran-later : Depends: r-cran-rlang but it is not installable
368s  r-cran-lifecycle : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
368s  r-cran-memoise : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
368s  r-cran-promises : Depends: r-cran-rlang but it is not installable
368s  r-cran-rsqlite : Depends: r-cran-rlang but it is not installable
368s  r-cran-sass : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
368s  r-cran-shiny : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
368s  r-cran-vctrs : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
368s E: Unable to correct problems, you have held broken packages.
368s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed
369s Reading package lists...
369s Building dependency tree...
369s Reading state information...
370s Starting pkgProblemResolver with broken count: 0
370s Starting 2 pkgProblemResolver with broken count: 0
370s Done
371s The following NEW packages will be installed:
371s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
371s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
371s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
371s   g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
371s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
371s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
371s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
371s   libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1
371s   libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev
371s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
371s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
371s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
371s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
371s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
371s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
371s   libjs-popper.js libjs-prettify libjs-sifter.js
371s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
371s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
371s   libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
371s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
371s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
371s   libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6
371s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
371s   libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0
371s   libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev
371s   libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv
371s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
371s   r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase
371s   r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle
371s   r-bioc-biocversion r-bioc-biostrings r-bioc-delayedarray r-bioc-edger
371s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
371s   r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-grohmm r-bioc-iranges
371s   r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics r-bioc-org.hs.eg.db
371s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
371s   r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment
371s   r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass
371s   r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64
371s   r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem
371s   r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon
371s   r-cran-curl r-cran-dbi r-cran-digest r-cran-evaluate r-cran-fastmap
371s   r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger
371s   r-cran-futile.options r-cran-glue r-cran-highr r-cran-htmltools
371s   r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr
371s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
371s   r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats
371s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten
371s   r-cran-plogr r-cran-png r-cran-promises r-cran-r6 r-cran-rappdirs
371s   r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang
371s   r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-snow
371s   r-cran-sourcetools r-cran-statmod r-cran-sys r-cran-tinytex r-cran-vctrs
371s   r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils
371s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
371s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
371s The following packages will be upgraded:
371s   gcc-14-base gcc-15-base libatomic1 libgcc-s1 libstdc++6 libtirpc-common
371s   libtirpc3t64 libzstd1 zstd
371s 9 upgraded, 258 newly installed, 0 to remove and 93 not upgraded.
371s Need to get 480 MB of archives.
371s After this operation, 1708 MB of additional disk space will be used.
371s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-15-base arm64 15.1.0-1ubuntu1 [54.5 kB]
371s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgcc-s1 arm64 15.1.0-1ubuntu1 [61.0 kB]
371s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libatomic1 arm64 15.1.0-1ubuntu1 [11.3 kB]
371s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libstdc++6 arm64 15.1.0-1ubuntu1 [761 kB]
371s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libzstd1 arm64 1.5.7+dfsg-1 [283 kB]
371s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-14-base arm64 14.2.0-22ubuntu1 [55.2 kB]
371s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtirpc-common all 1.3.6+ds-1 [8198 B]
371s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtirpc3t64 arm64 1.3.6+ds-1 [83.9 kB]
371s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB]
371s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
371s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [10.6 MB]
372s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 cpp-14 arm64 14.2.0-22ubuntu1 [1030 B]
372s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
372s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
372s Get:15 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libcc1-0 arm64 15.1.0-1ubuntu1 [49.1 kB]
372s Get:16 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgomp1 arm64 15.1.0-1ubuntu1 [147 kB]
372s Get:17 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libitm1 arm64 15.1.0-1ubuntu1 [28.1 kB]
372s Get:18 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libasan8 arm64 15.1.0-1ubuntu1 [2922 kB]
372s Get:19 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 liblsan0 arm64 15.1.0-1ubuntu1 [1317 kB]
372s Get:20 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtsan2 arm64 15.1.0-1ubuntu1 [2691 kB]
372s Get:21 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libubsan1 arm64 15.1.0-1ubuntu1 [1176 kB]
372s Get:22 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libhwasan0 arm64 15.1.0-1ubuntu1 [1639 kB]
372s Get:23 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgcc-14-dev arm64 14.2.0-22ubuntu1 [2593 kB]
372s Get:24 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [20.9 MB]
373s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-14 arm64 14.2.0-22ubuntu1 [536 kB]
373s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
373s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
373s Get:28 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libstdc++-14-dev arm64 14.2.0-22ubuntu1 [2820 kB]
373s Get:29 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [12.1 MB]
373s Get:30 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 g++-14 arm64 14.2.0-22ubuntu1 [24.0 kB]
373s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
373s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
373s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 build-essential arm64 12.12ubuntu1 [5082 B]
373s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
373s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
373s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
373s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB]
373s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB]
373s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig arm64 2.15.0-2.2ubuntu1 [191 kB]
373s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
373s Get:41 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-4 [119 kB]
373s Get:42 http://ftpmaster.internal/ubuntu questing/universe arm64 fonts-lmodern all 2.005-1 [4799 kB]
373s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
373s Get:44 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgfortran5 arm64 15.1.0-1ubuntu1 [444 kB]
373s Get:45 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgfortran-14-dev arm64 14.2.0-22ubuntu1 [498 kB]
373s Get:46 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [11.4 MB]
373s Get:47 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gfortran-14 arm64 14.2.0-22ubuntu1 [14.4 kB]
373s Get:48 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
373s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
373s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
373s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 javascript-common all 12 [5216 B]
373s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libio-string-perl all 1.08-4 [11.1 kB]
373s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB]
373s Get:54 http://ftpmaster.internal/ubuntu questing/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
373s Get:55 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
373s Get:56 http://ftpmaster.internal/ubuntu questing/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
373s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libboost1.83-dev arm64 1.83.0-4.2ubuntu1 [10.7 MB]
374s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B]
374s Get:59 http://ftpmaster.internal/ubuntu questing/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
374s Get:60 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
374s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
374s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
374s Get:63 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB]
374s Get:64 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB]
374s Get:65 http://ftpmaster.internal/ubuntu questing/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
374s Get:66 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB]
374s Get:67 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libdeflate-dev arm64 1.23-2 [53.6 kB]
374s Get:68 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
374s Get:69 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
374s Get:70 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB]
374s Get:71 http://ftpmaster.internal/ubuntu questing/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
374s Get:72 http://ftpmaster.internal/ubuntu questing/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
374s Get:73 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
374s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
374s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
374s Get:76 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
374s Get:77 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
374s Get:78 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 libjs-bootstrap all 3.4.1+dfsg-4 [129 kB]
374s Get:79 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
374s Get:80 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
374s Get:81 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
374s Get:82 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
374s Get:83 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
374s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
374s Get:85 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
374s Get:86 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
374s Get:87 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
374s Get:88 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
374s Get:89 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
374s Get:90 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
374s Get:91 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
374s Get:92 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
374s Get:93 http://ftpmaster.internal/ubuntu questing/universe arm64 libkpathsea6 arm64 2024.20240313.70630+ds-6 [64.4 kB]
374s Get:94 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
374s Get:95 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
375s Get:96 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
375s Get:97 http://ftpmaster.internal/ubuntu questing/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB]
375s Get:98 http://ftpmaster.internal/ubuntu questing/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB]
375s Get:99 http://ftpmaster.internal/ubuntu questing/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
375s Get:100 http://ftpmaster.internal/ubuntu questing/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
375s Get:101 http://ftpmaster.internal/ubuntu questing/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
375s Get:102 http://ftpmaster.internal/ubuntu questing/main arm64 libpango-1.0-0 arm64 1.56.3-1 [238 kB]
375s Get:103 http://ftpmaster.internal/ubuntu questing/main arm64 libpangoft2-1.0-0 arm64 1.56.3-1 [49.8 kB]
375s Get:104 http://ftpmaster.internal/ubuntu questing/main arm64 libpangocairo-1.0-0 arm64 1.56.3-1 [27.6 kB]
375s Get:105 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
375s Get:106 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
375s Get:107 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
375s Get:108 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
375s Get:109 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
375s Get:110 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
375s Get:111 http://ftpmaster.internal/ubuntu questing/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
375s Get:112 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
375s Get:113 http://ftpmaster.internal/ubuntu questing/main arm64 libpng-dev arm64 1.6.47-1.1 [269 kB]
375s Get:114 http://ftpmaster.internal/ubuntu questing/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB]
375s Get:115 http://ftpmaster.internal/ubuntu questing/universe arm64 libptexenc1 arm64 2024.20240313.70630+ds-6 [41.7 kB]
375s Get:116 http://ftpmaster.internal/ubuntu questing/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
375s Get:117 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
375s Get:118 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libsm6 arm64 2:1.2.6-1 [16.6 kB]
375s Get:119 http://ftpmaster.internal/ubuntu questing/universe arm64 libsynctex2 arm64 2024.20240313.70630+ds-6 [60.4 kB]
375s Get:120 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
375s Get:121 http://ftpmaster.internal/ubuntu questing/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB]
375s Get:122 http://ftpmaster.internal/ubuntu questing/universe arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-6 [122 kB]
375s Get:123 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
375s Get:124 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
375s Get:125 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.7.0-3ubuntu1 [197 kB]
375s Get:126 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
375s Get:127 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
375s Get:128 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
375s Get:129 http://ftpmaster.internal/ubuntu questing/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
375s Get:130 http://ftpmaster.internal/ubuntu questing/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB]
376s Get:131 http://ftpmaster.internal/ubuntu questing/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB]
376s Get:132 http://ftpmaster.internal/ubuntu questing/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB]
376s Get:133 http://ftpmaster.internal/ubuntu questing/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB]
376s Get:134 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libzstd-dev arm64 1.5.7+dfsg-1 [358 kB]
376s Get:135 http://ftpmaster.internal/ubuntu questing/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB]
376s Get:136 http://ftpmaster.internal/ubuntu questing/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
376s Get:137 http://ftpmaster.internal/ubuntu questing/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
376s Get:138 http://ftpmaster.internal/ubuntu questing/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
376s Get:139 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-base-core arm64 4.5.0-3 [28.7 MB]
377s Get:140 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-littler arm64 0.3.21-1 [99.7 kB]
377s Get:141 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 littler all 0.3.21-1 [2584 B]
377s Get:142 http://ftpmaster.internal/ubuntu questing/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
377s Get:143 http://ftpmaster.internal/ubuntu questing/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
377s Get:144 http://ftpmaster.internal/ubuntu questing/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
377s Get:145 http://ftpmaster.internal/ubuntu questing/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
377s Get:146 http://ftpmaster.internal/ubuntu questing/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB]
379s Get:147 http://ftpmaster.internal/ubuntu questing/main arm64 liblzma-dev arm64 5.6.4-1ubuntu1 [180 kB]
379s Get:148 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
379s Get:149 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
379s Get:150 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB]
379s Get:151 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-base-dev all 4.5.0-3 [4188 B]
379s Get:152 http://ftpmaster.internal/ubuntu questing/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
379s Get:153 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
379s Get:154 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB]
379s Get:155 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB]
379s Get:156 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-bioc-iranges arm64 2.40.1-3 [2301 kB]
379s Get:157 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB]
379s Get:158 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB]
379s Get:159 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB]
379s Get:160 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB]
379s Get:161 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB]
379s Get:162 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
379s Get:163 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
379s Get:164 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
379s Get:165 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB]
379s Get:166 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB]
379s Get:167 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB]
379s Get:168 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
379s Get:169 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
379s Get:170 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
379s Get:171 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB]
379s Get:172 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB]
379s Get:173 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB]
379s Get:174 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB]
379s Get:175 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB]
379s Get:176 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB]
379s Get:177 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB]
379s Get:178 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB]
379s Get:179 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB]
379s Get:180 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
379s Get:181 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB]
379s Get:182 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
379s Get:183 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB]
379s Get:184 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
379s Get:185 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
380s Get:186 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
380s Get:187 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
380s Get:188 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB]
381s Get:189 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB]
381s Get:190 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
381s Get:191 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
381s Get:192 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-formatr all 1.14-2 [152 kB]
381s Get:193 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
381s Get:194 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
381s Get:195 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
381s Get:196 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
381s Get:197 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB]
381s Get:198 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
381s Get:199 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB]
381s Get:200 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
381s Get:201 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
381s Get:202 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB]
381s Get:203 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
382s Get:204 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB]
382s Get:205 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
382s Get:206 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB]
382s Get:207 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
382s Get:208 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-knitr all 1.50+dfsg-1 [840 kB]
382s Get:209 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
382s Get:210 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
382s Get:211 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
382s Get:212 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB]
382s Get:213 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-bslib all 0.9.0+dfsg-3 [4562 kB]
382s Get:214 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
382s Get:215 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-tinytex all 0.56-1 [148 kB]
382s Get:216 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB]
382s Get:217 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
382s Get:218 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
382s Get:219 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB]
382s Get:220 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
382s Get:221 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB]
382s Get:222 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB]
382s Get:223 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
382s Get:224 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
382s Get:225 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
382s Get:226 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB]
382s Get:227 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
383s Get:228 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
383s Get:229 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
383s Get:230 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
383s Get:231 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
383s Get:232 http://ftpmaster.internal/ubuntu questing/universe arm64 tex-common all 6.19 [29.8 kB]
383s Get:233 http://ftpmaster.internal/ubuntu questing/main arm64 t1utils arm64 1.41-4build3 [61.0 kB]
383s Get:234 http://ftpmaster.internal/ubuntu questing/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-6 [8349 kB]
383s Get:235 http://ftpmaster.internal/ubuntu questing/universe arm64 texlive-base all 2024.20250309-1 [22.7 MB]
383s Get:236 http://ftpmaster.internal/ubuntu questing/universe arm64 texlive-latex-base all 2024.20250309-1 [1276 kB]
383s Get:237 http://ftpmaster.internal/ubuntu questing/universe arm64 texlive-bibtex-extra all 2024.20250309-2 [79.3 MB]
386s Get:238 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
386s Get:239 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
386s Get:240 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-lattice arm64 0.22-7-1 [1365 kB]
386s Get:241 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB]
386s Get:242 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB]
386s Get:243 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
386s Get:244 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB]
386s Get:245 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB]
386s Get:246 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-2 [1369 kB]
386s Get:247 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB]
386s Get:248 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB]
386s Get:249 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB]
386s Get:250 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-locfit arm64 1.5-9.12-1 [514 kB]
386s Get:251 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-edger arm64 4.4.2+dfsg-1 [1114 kB]
386s Get:252 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB]
386s Get:253 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
386s Get:254 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB]
386s Get:255 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB]
386s Get:256 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB]
386s Get:257 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB]
386s Get:258 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB]
386s Get:259 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB]
386s Get:260 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB]
386s Get:261 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB]
386s Get:262 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-bioc-rtracklayer arm64 1.66.0-3 [5216 kB]
387s Get:263 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
387s Get:264 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-mass arm64 7.3-65-1 [1109 kB]
387s Get:265 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-grohmm arm64 1.40.3-2 [4455 kB]
387s Get:266 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-org.hs.eg.db all 3.20.0-3 [63.1 MB]
389s Get:267 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 zstd arm64 1.5.7+dfsg-1 [607 kB]
390s Preconfiguring packages ...
390s Fetched 480 MB in 18s (27.0 MB/s)
390s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117821 files and directories currently installed.)
390s Preparing to unpack .../gcc-15-base_15.1.0-1ubuntu1_arm64.deb ...
390s Unpacking gcc-15-base:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
391s Setting up gcc-15-base:arm64 (15.1.0-1ubuntu1) ...
391s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117821 files and directories currently installed.)
391s Preparing to unpack .../libgcc-s1_15.1.0-1ubuntu1_arm64.deb ...
391s Unpacking libgcc-s1:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
391s Setting up libgcc-s1:arm64 (15.1.0-1ubuntu1) ...
391s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 45%
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117821 files and directories currently installed.)
391s Preparing to unpack .../libatomic1_15.1.0-1ubuntu1_arm64.deb ...
391s Unpacking libatomic1:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
391s Preparing to unpack .../libstdc++6_15.1.0-1ubuntu1_arm64.deb ...
391s Unpacking libstdc++6:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
392s Setting up libstdc++6:arm64 (15.1.0-1ubuntu1) ...
392s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 25%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117821 files and directories currently installed.)
392s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_arm64.deb ...
392s Unpacking libzstd1:arm64 (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ...
392s Setting up libzstd1:arm64 (1.5.7+dfsg-1) ...
392s (Reading database ... 
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392s Preparing to unpack .../000-gcc-14-base_14.2.0-22ubuntu1_arm64.deb ...
392s Unpacking gcc-14-base:arm64 (14.2.0-22ubuntu1) over (14.2.0-19ubuntu2) ...
393s Preparing to unpack .../001-libtirpc-common_1.3.6+ds-1_all.deb ...
393s Unpacking libtirpc-common (1.3.6+ds-1) over (1.3.4+ds-1.3) ...
393s Preparing to unpack .../002-libtirpc3t64_1.3.6+ds-1_arm64.deb ...
394s Unpacking libtirpc3t64:arm64 (1.3.6+ds-1) over (1.3.4+ds-1.3) ...
394s Selecting previously unselected package libisl23:arm64.
394s Preparing to unpack .../003-libisl23_0.27-1_arm64.deb ...
394s Unpacking libisl23:arm64 (0.27-1) ...
394s Selecting previously unselected package libmpc3:arm64.
394s Preparing to unpack .../004-libmpc3_1.3.1-1build2_arm64.deb ...
394s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
394s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
395s Preparing to unpack .../005-cpp-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
395s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
395s Selecting previously unselected package cpp-14.
396s Preparing to unpack .../006-cpp-14_14.2.0-22ubuntu1_arm64.deb ...
396s Unpacking cpp-14 (14.2.0-22ubuntu1) ...
396s Selecting previously unselected package cpp-aarch64-linux-gnu.
397s Preparing to unpack .../007-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
397s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
397s Selecting previously unselected package cpp.
397s Preparing to unpack .../008-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
397s Unpacking cpp (4:14.2.0-1ubuntu1) ...
397s Selecting previously unselected package libcc1-0:arm64.
397s Preparing to unpack .../009-libcc1-0_15.1.0-1ubuntu1_arm64.deb ...
397s Unpacking libcc1-0:arm64 (15.1.0-1ubuntu1) ...
397s Selecting previously unselected package libgomp1:arm64.
398s Preparing to unpack .../010-libgomp1_15.1.0-1ubuntu1_arm64.deb ...
398s Unpacking libgomp1:arm64 (15.1.0-1ubuntu1) ...
398s Selecting previously unselected package libitm1:arm64.
398s Preparing to unpack .../011-libitm1_15.1.0-1ubuntu1_arm64.deb ...
398s Unpacking libitm1:arm64 (15.1.0-1ubuntu1) ...
398s Selecting previously unselected package libasan8:arm64.
399s Preparing to unpack .../012-libasan8_15.1.0-1ubuntu1_arm64.deb ...
399s Unpacking libasan8:arm64 (15.1.0-1ubuntu1) ...
399s Selecting previously unselected package liblsan0:arm64.
399s Preparing to unpack .../013-liblsan0_15.1.0-1ubuntu1_arm64.deb ...
399s Unpacking liblsan0:arm64 (15.1.0-1ubuntu1) ...
399s Selecting previously unselected package libtsan2:arm64.
400s Preparing to unpack .../014-libtsan2_15.1.0-1ubuntu1_arm64.deb ...
400s Unpacking libtsan2:arm64 (15.1.0-1ubuntu1) ...
400s Selecting previously unselected package libubsan1:arm64.
400s Preparing to unpack .../015-libubsan1_15.1.0-1ubuntu1_arm64.deb ...
400s Unpacking libubsan1:arm64 (15.1.0-1ubuntu1) ...
400s Selecting previously unselected package libhwasan0:arm64.
400s Preparing to unpack .../016-libhwasan0_15.1.0-1ubuntu1_arm64.deb ...
400s Unpacking libhwasan0:arm64 (15.1.0-1ubuntu1) ...
400s Selecting previously unselected package libgcc-14-dev:arm64.
401s Preparing to unpack .../017-libgcc-14-dev_14.2.0-22ubuntu1_arm64.deb ...
401s Unpacking libgcc-14-dev:arm64 (14.2.0-22ubuntu1) ...
401s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
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402s Selecting previously unselected package gcc-14.
402s Preparing to unpack .../019-gcc-14_14.2.0-22ubuntu1_arm64.deb ...
402s Unpacking gcc-14 (14.2.0-22ubuntu1) ...
402s Selecting previously unselected package gcc-aarch64-linux-gnu.
402s Preparing to unpack .../020-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
402s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
403s Selecting previously unselected package gcc.
403s Preparing to unpack .../021-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
403s Unpacking gcc (4:14.2.0-1ubuntu1) ...
403s Selecting previously unselected package libstdc++-14-dev:arm64.
403s Preparing to unpack .../022-libstdc++-14-dev_14.2.0-22ubuntu1_arm64.deb ...
403s Unpacking libstdc++-14-dev:arm64 (14.2.0-22ubuntu1) ...
403s Selecting previously unselected package g++-14-aarch64-linux-gnu.
404s Preparing to unpack .../023-g++-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
404s Unpacking g++-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
404s Selecting previously unselected package g++-14.
405s Preparing to unpack .../024-g++-14_14.2.0-22ubuntu1_arm64.deb ...
405s Unpacking g++-14 (14.2.0-22ubuntu1) ...
405s Selecting previously unselected package g++-aarch64-linux-gnu.
405s Preparing to unpack .../025-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
405s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
405s Selecting previously unselected package g++.
406s Preparing to unpack .../026-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
406s Unpacking g++ (4:14.2.0-1ubuntu1) ...
406s Selecting previously unselected package build-essential.
407s Preparing to unpack .../027-build-essential_12.12ubuntu1_arm64.deb ...
407s Unpacking build-essential (12.12ubuntu1) ...
407s Selecting previously unselected package dctrl-tools.
408s Preparing to unpack .../028-dctrl-tools_2.24-3build3_arm64.deb ...
408s Unpacking dctrl-tools (2.24-3build3) ...
409s Selecting previously unselected package fonts-dejavu-mono.
409s Preparing to unpack .../029-fonts-dejavu-mono_2.37-8_all.deb ...
409s Unpacking fonts-dejavu-mono (2.37-8) ...
409s Selecting previously unselected package fonts-dejavu-core.
410s Preparing to unpack .../030-fonts-dejavu-core_2.37-8_all.deb ...
410s Unpacking fonts-dejavu-core (2.37-8) ...
410s Selecting previously unselected package fontconfig-config.
411s Preparing to unpack .../031-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ...
412s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
412s Selecting previously unselected package libfontconfig1:arm64.
412s Preparing to unpack .../032-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ...
412s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ...
412s Selecting previously unselected package fontconfig.
412s Preparing to unpack .../033-fontconfig_2.15.0-2.2ubuntu1_arm64.deb ...
412s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
412s Selecting previously unselected package fonts-font-awesome.
413s Preparing to unpack .../034-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
413s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
413s Selecting previously unselected package fonts-glyphicons-halflings.
413s Preparing to unpack .../035-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-4_all.deb ...
413s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-4) ...
413s Selecting previously unselected package fonts-lmodern.
414s Preparing to unpack .../036-fonts-lmodern_2.005-1_all.deb ...
414s Unpacking fonts-lmodern (2.005-1) ...
414s Selecting previously unselected package fonts-mathjax.
414s Preparing to unpack .../037-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
414s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
414s Selecting previously unselected package libgfortran5:arm64.
415s Preparing to unpack .../038-libgfortran5_15.1.0-1ubuntu1_arm64.deb ...
415s Unpacking libgfortran5:arm64 (15.1.0-1ubuntu1) ...
415s Selecting previously unselected package libgfortran-14-dev:arm64.
415s Preparing to unpack .../039-libgfortran-14-dev_14.2.0-22ubuntu1_arm64.deb ...
415s Unpacking libgfortran-14-dev:arm64 (14.2.0-22ubuntu1) ...
415s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
415s Preparing to unpack .../040-gfortran-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
415s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
415s Selecting previously unselected package gfortran-14.
416s Preparing to unpack .../041-gfortran-14_14.2.0-22ubuntu1_arm64.deb ...
416s Unpacking gfortran-14 (14.2.0-22ubuntu1) ...
416s Selecting previously unselected package gfortran-aarch64-linux-gnu.
416s Preparing to unpack .../042-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
416s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
416s Selecting previously unselected package gfortran.
416s Preparing to unpack .../043-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
416s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
416s Selecting previously unselected package icu-devtools.
417s Preparing to unpack .../044-icu-devtools_76.1-1ubuntu2_arm64.deb ...
417s Unpacking icu-devtools (76.1-1ubuntu2) ...
417s Selecting previously unselected package javascript-common.
417s Preparing to unpack .../045-javascript-common_12_all.deb ...
417s Unpacking javascript-common (12) ...
417s Selecting previously unselected package libio-string-perl.
418s Preparing to unpack .../046-libio-string-perl_1.08-4_all.deb ...
418s Unpacking libio-string-perl (1.08-4) ...
418s Selecting previously unselected package liblatex-tounicode-perl.
418s Preparing to unpack .../047-liblatex-tounicode-perl_0.55-1_all.deb ...
418s Unpacking liblatex-tounicode-perl (0.55-1) ...
418s Selecting previously unselected package libbibtex-parser-perl.
419s Preparing to unpack .../048-libbibtex-parser-perl_1.05+dfsg-1_all.deb ...
419s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ...
419s Selecting previously unselected package libblas3:arm64.
419s Preparing to unpack .../049-libblas3_3.12.1-2_arm64.deb ...
419s Unpacking libblas3:arm64 (3.12.1-2) ...
419s Selecting previously unselected package libblas-dev:arm64.
419s Preparing to unpack .../050-libblas-dev_3.12.1-2_arm64.deb ...
419s Unpacking libblas-dev:arm64 (3.12.1-2) ...
419s Selecting previously unselected package libboost1.83-dev:arm64.
419s Preparing to unpack .../051-libboost1.83-dev_1.83.0-4.2ubuntu1_arm64.deb ...
419s Unpacking libboost1.83-dev:arm64 (1.83.0-4.2ubuntu1) ...
421s Selecting previously unselected package libboost-dev:arm64.
421s Preparing to unpack .../052-libboost-dev_1.83.0.2ubuntu1_arm64.deb ...
421s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ...
421s Selecting previously unselected package libbz2-dev:arm64.
421s Preparing to unpack .../053-libbz2-dev_1.0.8-6_arm64.deb ...
421s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
421s Selecting previously unselected package libpixman-1-0:arm64.
422s Preparing to unpack .../054-libpixman-1-0_0.44.0-3_arm64.deb ...
422s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
422s Selecting previously unselected package libxcb-render0:arm64.
422s Preparing to unpack .../055-libxcb-render0_1.17.0-2_arm64.deb ...
422s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
422s Selecting previously unselected package libxcb-shm0:arm64.
422s Preparing to unpack .../056-libxcb-shm0_1.17.0-2_arm64.deb ...
422s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
422s Selecting previously unselected package libxrender1:arm64.
422s Preparing to unpack .../057-libxrender1_1%3a0.9.12-1_arm64.deb ...
422s Unpacking libxrender1:arm64 (1:0.9.12-1) ...
423s Selecting previously unselected package libcairo2:arm64.
423s Preparing to unpack .../058-libcairo2_1.18.4-1_arm64.deb ...
423s Unpacking libcairo2:arm64 (1.18.4-1) ...
423s Selecting previously unselected package libdatrie1:arm64.
423s Preparing to unpack .../059-libdatrie1_0.2.13-3build1_arm64.deb ...
423s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
423s Selecting previously unselected package libdeflate0:arm64.
423s Preparing to unpack .../060-libdeflate0_1.23-2_arm64.deb ...
423s Unpacking libdeflate0:arm64 (1.23-2) ...
423s Selecting previously unselected package libdeflate-dev:arm64.
423s Preparing to unpack .../061-libdeflate-dev_1.23-2_arm64.deb ...
423s Unpacking libdeflate-dev:arm64 (1.23-2) ...
424s Selecting previously unselected package libgraphite2-3:arm64.
424s Preparing to unpack .../062-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
424s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
424s Selecting previously unselected package libharfbuzz0b:arm64.
424s Preparing to unpack .../063-libharfbuzz0b_10.2.0-1_arm64.deb ...
424s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
424s Selecting previously unselected package x11-common.
424s Preparing to unpack .../064-x11-common_1%3a7.7+23ubuntu4_all.deb ...
424s Unpacking x11-common (1:7.7+23ubuntu4) ...
424s Selecting previously unselected package libice6:arm64.
425s Preparing to unpack .../065-libice6_2%3a1.1.1-1_arm64.deb ...
425s Unpacking libice6:arm64 (2:1.1.1-1) ...
425s Selecting previously unselected package libicu-dev:arm64.
425s Preparing to unpack .../066-libicu-dev_76.1-1ubuntu2_arm64.deb ...
425s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
425s Selecting previously unselected package libjpeg-turbo8:arm64.
426s Preparing to unpack .../067-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
426s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
426s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
426s Preparing to unpack .../068-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
426s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
426s Selecting previously unselected package libjpeg8:arm64.
426s Preparing to unpack .../069-libjpeg8_8c-2ubuntu11_arm64.deb ...
426s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
426s Selecting previously unselected package libjpeg8-dev:arm64.
427s Preparing to unpack .../070-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
427s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
427s Selecting previously unselected package libjpeg-dev:arm64.
427s Preparing to unpack .../071-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
427s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
427s Selecting previously unselected package libjs-bootstrap.
427s Preparing to unpack .../072-libjs-bootstrap_3.4.1+dfsg-4_all.deb ...
427s Unpacking libjs-bootstrap (3.4.1+dfsg-4) ...
427s Selecting previously unselected package libjs-popper.js.
428s Preparing to unpack .../073-libjs-popper.js_1.16.1+ds-6_all.deb ...
428s Unpacking libjs-popper.js (1.16.1+ds-6) ...
428s Selecting previously unselected package libjs-bootstrap4.
428s Preparing to unpack .../074-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ...
428s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ...
428s Selecting previously unselected package libjs-d3.
429s Preparing to unpack .../075-libjs-d3_3.5.17-4_all.deb ...
429s Unpacking libjs-d3 (3.5.17-4) ...
429s Selecting previously unselected package libjs-es5-shim.
429s Preparing to unpack .../076-libjs-es5-shim_4.6.7-2_all.deb ...
429s Unpacking libjs-es5-shim (4.6.7-2) ...
429s Selecting previously unselected package libjs-highlight.js.
429s Preparing to unpack .../077-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
429s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
429s Selecting previously unselected package libjs-jquery.
430s Preparing to unpack .../078-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
430s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
430s Selecting previously unselected package libjs-jquery-datatables.
430s Preparing to unpack .../079-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
430s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
430s Selecting previously unselected package libjs-sifter.js.
431s Preparing to unpack .../080-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
431s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
431s Selecting previously unselected package libjs-microplugin.js.
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431s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ...
431s Selecting previously unselected package libjs-jquery-selectize.js.
432s Preparing to unpack .../082-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
432s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
432s Selecting previously unselected package libjs-jquery-ui.
433s Preparing to unpack .../083-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
433s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
433s Selecting previously unselected package libjs-json.
435s Preparing to unpack .../084-libjs-json_0~20221030+~1.0.8-1_all.deb ...
435s Unpacking libjs-json (0~20221030+~1.0.8-1) ...
435s Selecting previously unselected package libjs-lunr.
436s Preparing to unpack .../085-libjs-lunr_2.3.9~dfsg-2_all.deb ...
436s Unpacking libjs-lunr (2.3.9~dfsg-2) ...
436s Selecting previously unselected package libjs-prettify.
438s Preparing to unpack .../086-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ...
438s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ...
438s Selecting previously unselected package libkpathsea6:arm64.
439s Preparing to unpack .../087-libkpathsea6_2024.20240313.70630+ds-6_arm64.deb ...
439s Unpacking libkpathsea6:arm64 (2024.20240313.70630+ds-6) ...
439s Selecting previously unselected package liblapack3:arm64.
440s Preparing to unpack .../088-liblapack3_3.12.1-2_arm64.deb ...
440s Unpacking liblapack3:arm64 (3.12.1-2) ...
440s Selecting previously unselected package liblapack-dev:arm64.
441s Preparing to unpack .../089-liblapack-dev_3.12.1-2_arm64.deb ...
441s Unpacking liblapack-dev:arm64 (3.12.1-2) ...
441s Selecting previously unselected package liblerc4:arm64.
443s Preparing to unpack .../090-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
443s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
443s Selecting previously unselected package liblua5.4-0:arm64.
444s Preparing to unpack .../091-liblua5.4-0_5.4.7-1_arm64.deb ...
444s Unpacking liblua5.4-0:arm64 (5.4.7-1) ...
445s Selecting previously unselected package libmpfi0:arm64.
446s Preparing to unpack .../092-libmpfi0_1.5.4+ds-4_arm64.deb ...
446s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ...
446s Selecting previously unselected package libncurses-dev:arm64.
447s Preparing to unpack .../093-libncurses-dev_6.5+20250216-2_arm64.deb ...
447s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ...
447s Selecting previously unselected package libthai-data.
448s Preparing to unpack .../094-libthai-data_0.1.29-2build1_all.deb ...
448s Unpacking libthai-data (0.1.29-2build1) ...
448s Selecting previously unselected package libthai0:arm64.
449s Preparing to unpack .../095-libthai0_0.1.29-2build1_arm64.deb ...
449s Unpacking libthai0:arm64 (0.1.29-2build1) ...
449s Selecting previously unselected package libpango-1.0-0:arm64.
449s Preparing to unpack .../096-libpango-1.0-0_1.56.3-1_arm64.deb ...
449s Unpacking libpango-1.0-0:arm64 (1.56.3-1) ...
449s Selecting previously unselected package libpangoft2-1.0-0:arm64.
450s Preparing to unpack .../097-libpangoft2-1.0-0_1.56.3-1_arm64.deb ...
450s Unpacking libpangoft2-1.0-0:arm64 (1.56.3-1) ...
450s Selecting previously unselected package libpangocairo-1.0-0:arm64.
450s Preparing to unpack .../098-libpangocairo-1.0-0_1.56.3-1_arm64.deb ...
450s Unpacking libpangocairo-1.0-0:arm64 (1.56.3-1) ...
450s Selecting previously unselected package libpaper2:arm64.
451s Preparing to unpack .../099-libpaper2_2.2.5-0.3_arm64.deb ...
451s Unpacking libpaper2:arm64 (2.2.5-0.3) ...
451s Selecting previously unselected package libpaper-utils.
451s Preparing to unpack .../100-libpaper-utils_2.2.5-0.3_arm64.deb ...
451s Unpacking libpaper-utils (2.2.5-0.3) ...
451s Selecting previously unselected package libpcre2-16-0:arm64.
452s Preparing to unpack .../101-libpcre2-16-0_10.45-1_arm64.deb ...
452s Unpacking libpcre2-16-0:arm64 (10.45-1) ...
452s Selecting previously unselected package libpcre2-32-0:arm64.
452s Preparing to unpack .../102-libpcre2-32-0_10.45-1_arm64.deb ...
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452s Selecting previously unselected package libpcre2-posix3:arm64.
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453s Selecting previously unselected package libpcre2-dev:arm64.
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453s Selecting previously unselected package libpkgconf3:arm64.
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454s Selecting previously unselected package zlib1g-dev:arm64.
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454s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
454s Selecting previously unselected package libpng-dev:arm64.
454s Preparing to unpack .../107-libpng-dev_1.6.47-1.1_arm64.deb ...
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454s Selecting previously unselected package libpotrace0:arm64.
455s Preparing to unpack .../108-libpotrace0_1.16-2build1_arm64.deb ...
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455s Selecting previously unselected package libptexenc1:arm64.
455s Preparing to unpack .../109-libptexenc1_2024.20240313.70630+ds-6_arm64.deb ...
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455s Selecting previously unselected package libreadline-dev:arm64.
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458s Selecting previously unselected package libsm6:arm64.
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462s Selecting previously unselected package libtcl8.6:arm64.
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464s Selecting previously unselected package libtexlua53-5:arm64.
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472s Selecting previously unselected package libxpm4:arm64.
473s Preparing to unpack .../125-libxpm4_1%3a3.5.17-1build2_arm64.deb ...
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473s Selecting previously unselected package libxaw7:arm64.
473s Preparing to unpack .../126-libxaw7_2%3a1.0.16-1_arm64.deb ...
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473s Selecting previously unselected package libxi6:arm64.
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474s Selecting previously unselected package libzstd-dev:arm64.
475s Preparing to unpack .../128-libzstd-dev_1.5.7+dfsg-1_arm64.deb ...
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475s Selecting previously unselected package libzzip-0-13t64:arm64.
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478s Preparing to unpack .../132-xdg-utils_1.2.1-2ubuntu1_all.deb ...
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478s Selecting previously unselected package r-base-core.
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480s Unpacking r-base-core (4.5.0-3) ...
480s Selecting previously unselected package r-cran-littler.
481s Preparing to unpack .../134-r-cran-littler_0.3.21-1_arm64.deb ...
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481s Selecting previously unselected package node-bootstrap-sass.
483s Preparing to unpack .../136-node-bootstrap-sass_3.4.3-2_all.deb ...
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484s Selecting previously unselected package node-html5shiv.
485s Preparing to unpack .../137-node-html5shiv_3.7.3+dfsg-5_all.deb ...
485s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
485s Selecting previously unselected package node-normalize.css.
486s Preparing to unpack .../138-node-normalize.css_8.0.1-5_all.deb ...
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486s Selecting previously unselected package pandoc-data.
487s Preparing to unpack .../139-pandoc-data_3.1.11.1-3build1_all.deb ...
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487s Selecting previously unselected package pandoc.
488s Preparing to unpack .../140-pandoc_3.1.11.1+ds-2_arm64.deb ...
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489s Selecting previously unselected package liblzma-dev:arm64.
490s Preparing to unpack .../141-liblzma-dev_5.6.4-1ubuntu1_arm64.deb ...
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490s Selecting previously unselected package pkgconf-bin.
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491s Selecting previously unselected package pkgconf:arm64.
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492s Selecting previously unselected package libtirpc-dev:arm64.
493s Preparing to unpack .../144-libtirpc-dev_1.3.6+ds-1_arm64.deb ...
493s Unpacking libtirpc-dev:arm64 (1.3.6+ds-1) ...
493s Selecting previously unselected package r-base-dev.
494s Preparing to unpack .../145-r-base-dev_4.5.0-3_all.deb ...
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494s Selecting previously unselected package pkg-r-autopkgtest.
495s Preparing to unpack .../146-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
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496s Selecting previously unselected package r-bioc-biocgenerics.
497s Preparing to unpack .../147-r-bioc-biocgenerics_0.52.0-2_all.deb ...
497s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
497s Selecting previously unselected package r-bioc-biobase.
498s Preparing to unpack .../148-r-bioc-biobase_2.66.0-2_arm64.deb ...
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498s Selecting previously unselected package r-bioc-s4vectors.
499s Preparing to unpack .../149-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ...
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499s Selecting previously unselected package r-bioc-iranges.
500s Preparing to unpack .../150-r-bioc-iranges_2.40.1-3_arm64.deb ...
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500s Selecting previously unselected package r-cran-dbi.
500s Preparing to unpack .../151-r-cran-dbi_1.2.3-1_all.deb ...
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501s Selecting previously unselected package r-cran-bit.
501s Preparing to unpack .../152-r-cran-bit_4.6.0+dfsg-1_arm64.deb ...
501s Unpacking r-cran-bit (4.6.0+dfsg-1) ...
501s Selecting previously unselected package r-cran-bit64.
502s Preparing to unpack .../153-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ...
502s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ...
502s Selecting previously unselected package r-cran-rlang.
503s Preparing to unpack .../154-r-cran-rlang_1.1.5-3_arm64.deb ...
503s Unpacking r-cran-rlang (1.1.5-3) ...
503s Selecting previously unselected package r-cran-cli.
503s Preparing to unpack .../155-r-cran-cli_3.6.4-1_arm64.deb ...
503s Unpacking r-cran-cli (3.6.4-1) ...
503s Selecting previously unselected package r-cran-glue.
504s Preparing to unpack .../156-r-cran-glue_1.8.0-1_arm64.deb ...
504s Unpacking r-cran-glue (1.8.0-1) ...
504s Selecting previously unselected package r-cran-lifecycle.
505s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
505s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
505s Selecting previously unselected package r-cran-vctrs.
505s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_arm64.deb ...
505s Unpacking r-cran-vctrs (0.6.5-1) ...
505s Selecting previously unselected package r-cran-blob.
506s Preparing to unpack .../159-r-cran-blob_1.2.4-1_all.deb ...
506s Unpacking r-cran-blob (1.2.4-1) ...
506s Selecting previously unselected package r-cran-fastmap.
506s Preparing to unpack .../160-r-cran-fastmap_1.2.0-1_arm64.deb ...
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507s Selecting previously unselected package r-cran-cachem.
507s Preparing to unpack .../161-r-cran-cachem_1.1.0-1_arm64.deb ...
507s Unpacking r-cran-cachem (1.1.0-1) ...
507s Selecting previously unselected package r-cran-memoise.
508s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ...
508s Unpacking r-cran-memoise (2.0.1-1) ...
508s Selecting previously unselected package r-cran-pkgconfig.
508s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
508s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
508s Selecting previously unselected package r-cran-plogr.
509s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build1_all.deb ...
509s Unpacking r-cran-plogr (0.2.0-3build1) ...
509s Selecting previously unselected package r-cran-cpp11.
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510s Selecting previously unselected package r-cran-rsqlite.
510s Preparing to unpack .../166-r-cran-rsqlite_2.3.9-1_arm64.deb ...
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510s Selecting previously unselected package r-cran-curl.
510s Preparing to unpack .../167-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ...
510s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
510s Selecting previously unselected package r-cran-jsonlite.
511s Preparing to unpack .../168-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ...
511s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
511s Selecting previously unselected package r-cran-mime.
511s Preparing to unpack .../169-r-cran-mime_0.12-2_arm64.deb ...
511s Unpacking r-cran-mime (0.12-2) ...
511s Selecting previously unselected package r-cran-sys.
512s Preparing to unpack .../170-r-cran-sys_3.4.3-1_arm64.deb ...
512s Unpacking r-cran-sys (3.4.3-1) ...
512s Selecting previously unselected package r-cran-askpass.
512s Preparing to unpack .../171-r-cran-askpass_1.2.1-1_arm64.deb ...
512s Unpacking r-cran-askpass (1.2.1-1) ...
512s Selecting previously unselected package r-cran-openssl.
512s Preparing to unpack .../172-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ...
512s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
513s Selecting previously unselected package r-cran-r6.
513s Preparing to unpack .../173-r-cran-r6_2.6.1-1_all.deb ...
513s Unpacking r-cran-r6 (2.6.1-1) ...
513s Selecting previously unselected package r-cran-httr.
513s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ...
513s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
513s Selecting previously unselected package r-cran-png.
514s Preparing to unpack .../175-r-cran-png_0.1-8-1build2_arm64.deb ...
514s Unpacking r-cran-png (0.1-8-1build2) ...
514s Selecting previously unselected package r-bioc-zlibbioc.
515s Preparing to unpack .../176-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
515s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
515s Selecting previously unselected package r-bioc-xvector.
516s Preparing to unpack .../177-r-bioc-xvector_0.46.0-2_arm64.deb ...
516s Unpacking r-bioc-xvector (0.46.0-2) ...
516s Selecting previously unselected package r-bioc-ucsc.utils.
517s Preparing to unpack .../178-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
517s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
517s Selecting previously unselected package r-bioc-genomeinfodbdata.
518s Preparing to unpack .../179-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
518s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
518s Selecting previously unselected package r-bioc-genomeinfodb.
518s Preparing to unpack .../180-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
518s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
518s Selecting previously unselected package r-cran-crayon.
519s Preparing to unpack .../181-r-cran-crayon_1.5.3-1_all.deb ...
519s Unpacking r-cran-crayon (1.5.3-1) ...
519s Selecting previously unselected package r-bioc-biostrings.
519s Preparing to unpack .../182-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ...
519s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
519s Selecting previously unselected package r-bioc-keggrest.
520s Preparing to unpack .../183-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ...
520s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ...
520s Selecting previously unselected package r-bioc-annotationdbi.
520s Preparing to unpack .../184-r-bioc-annotationdbi_1.68.0-2_all.deb ...
520s Unpacking r-bioc-annotationdbi (1.68.0-2) ...
520s Selecting previously unselected package r-bioc-biocio.
521s Preparing to unpack .../185-r-bioc-biocio_1.16.0+dfsg-2_all.deb ...
521s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ...
521s Selecting previously unselected package r-cran-formatr.
521s Preparing to unpack .../186-r-cran-formatr_1.14-2_all.deb ...
521s Unpacking r-cran-formatr (1.14-2) ...
521s Selecting previously unselected package r-cran-lambda.r.
522s Preparing to unpack .../187-r-cran-lambda.r_1.2.4-2build1_all.deb ...
522s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
522s Selecting previously unselected package r-cran-futile.options.
522s Preparing to unpack .../188-r-cran-futile.options_1.0.1-3build1_all.deb ...
522s Unpacking r-cran-futile.options (1.0.1-3build1) ...
522s Selecting previously unselected package r-cran-futile.logger.
523s Preparing to unpack .../189-r-cran-futile.logger_1.4.3-4build1_all.deb ...
523s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
523s Selecting previously unselected package r-cran-snow.
523s Preparing to unpack .../190-r-cran-snow_1%3a0.4.4-2_all.deb ...
523s Unpacking r-cran-snow (1:0.4.4-2) ...
523s Selecting previously unselected package r-cran-codetools.
524s Preparing to unpack .../191-r-cran-codetools_0.2-20-1_all.deb ...
524s Unpacking r-cran-codetools (0.2-20-1) ...
524s Selecting previously unselected package r-cran-bh.
525s Preparing to unpack .../192-r-cran-bh_1.84.0-1_all.deb ...
525s Unpacking r-cran-bh (1.84.0-1) ...
525s Selecting previously unselected package r-bioc-biocparallel.
525s Preparing to unpack .../193-r-bioc-biocparallel_1.40.0-2_arm64.deb ...
525s Unpacking r-bioc-biocparallel (1.40.0-2) ...
525s Selecting previously unselected package r-cran-base64enc.
526s Preparing to unpack .../194-r-cran-base64enc_0.1-3-3_arm64.deb ...
526s Unpacking r-cran-base64enc (0.1-3-3) ...
526s Selecting previously unselected package r-cran-digest.
526s Preparing to unpack .../195-r-cran-digest_0.6.37-1_arm64.deb ...
526s Unpacking r-cran-digest (0.6.37-1) ...
526s Selecting previously unselected package r-cran-htmltools.
527s Preparing to unpack .../196-r-cran-htmltools_0.5.8.1-1_arm64.deb ...
527s Unpacking r-cran-htmltools (0.5.8.1-1) ...
527s Selecting previously unselected package r-cran-evaluate.
528s Preparing to unpack .../197-r-cran-evaluate_1.0.3-1_all.deb ...
528s Unpacking r-cran-evaluate (1.0.3-1) ...
528s Selecting previously unselected package r-cran-xfun.
528s Preparing to unpack .../198-r-cran-xfun_0.51+dfsg-1_arm64.deb ...
528s Unpacking r-cran-xfun (0.51+dfsg-1) ...
528s Selecting previously unselected package r-cran-highr.
529s Preparing to unpack .../199-r-cran-highr_0.11+dfsg-1_all.deb ...
529s Unpacking r-cran-highr (0.11+dfsg-1) ...
529s Selecting previously unselected package r-cran-yaml.
529s Preparing to unpack .../200-r-cran-yaml_2.3.10-1_arm64.deb ...
529s Unpacking r-cran-yaml (2.3.10-1) ...
529s Selecting previously unselected package libjs-mathjax.
530s Preparing to unpack .../201-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
530s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
531s Selecting previously unselected package r-cran-knitr.
531s Preparing to unpack .../202-r-cran-knitr_1.50+dfsg-1_all.deb ...
531s Unpacking r-cran-knitr (1.50+dfsg-1) ...
531s Selecting previously unselected package r-cran-jquerylib.
532s Preparing to unpack .../203-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
532s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
532s Selecting previously unselected package r-cran-fs.
532s Preparing to unpack .../204-r-cran-fs_1.6.5+dfsg-1_arm64.deb ...
532s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
532s Selecting previously unselected package r-cran-rappdirs.
533s Preparing to unpack .../205-r-cran-rappdirs_0.3.3-1_arm64.deb ...
533s Unpacking r-cran-rappdirs (0.3.3-1) ...
533s Selecting previously unselected package r-cran-sass.
534s Preparing to unpack .../206-r-cran-sass_0.4.9+dfsg-1_arm64.deb ...
534s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
534s Selecting previously unselected package r-cran-bslib.
534s Preparing to unpack .../207-r-cran-bslib_0.9.0+dfsg-3_all.deb ...
534s Unpacking r-cran-bslib (0.9.0+dfsg-3) ...
535s Selecting previously unselected package r-cran-fontawesome.
535s Preparing to unpack .../208-r-cran-fontawesome_0.5.3-1_all.deb ...
535s Unpacking r-cran-fontawesome (0.5.3-1) ...
535s Selecting previously unselected package r-cran-tinytex.
535s Preparing to unpack .../209-r-cran-tinytex_0.56-1_all.deb ...
535s Unpacking r-cran-tinytex (0.56-1) ...
535s Selecting previously unselected package libjs-modernizr.
536s Preparing to unpack .../210-libjs-modernizr_3.13.0-0.1_all.deb ...
536s Unpacking libjs-modernizr (3.13.0-0.1) ...
536s Selecting previously unselected package r-cran-pkgkitten.
536s Preparing to unpack .../211-r-cran-pkgkitten_0.2.4-1_all.deb ...
536s Unpacking r-cran-pkgkitten (0.2.4-1) ...
536s Selecting previously unselected package r-cran-rcpp.
537s Preparing to unpack .../212-r-cran-rcpp_1.0.14-1_arm64.deb ...
537s Unpacking r-cran-rcpp (1.0.14-1) ...
537s Selecting previously unselected package r-cran-later.
537s Preparing to unpack .../213-r-cran-later_1.4.1+dfsg-1_arm64.deb ...
537s Unpacking r-cran-later (1.4.1+dfsg-1) ...
537s Selecting previously unselected package r-cran-magrittr.
537s Preparing to unpack .../214-r-cran-magrittr_2.0.3-1_arm64.deb ...
537s Unpacking r-cran-magrittr (2.0.3-1) ...
537s Selecting previously unselected package r-cran-promises.
538s Preparing to unpack .../215-r-cran-promises_1.3.2+dfsg-1_arm64.deb ...
538s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
538s Selecting previously unselected package r-cran-httpuv.
538s Preparing to unpack .../216-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ...
538s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
538s Selecting previously unselected package r-cran-xtable.
539s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ...
539s Unpacking r-cran-xtable (1:1.8-4-2) ...
539s Selecting previously unselected package r-cran-sourcetools.
539s Preparing to unpack .../218-r-cran-sourcetools_0.1.7-1-1_arm64.deb ...
539s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
539s Selecting previously unselected package r-cran-withr.
540s Preparing to unpack .../219-r-cran-withr_3.0.2+dfsg-1_all.deb ...
540s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
540s Selecting previously unselected package r-cran-commonmark.
540s Preparing to unpack .../220-r-cran-commonmark_1.9.5-1_arm64.deb ...
540s Unpacking r-cran-commonmark (1.9.5-1) ...
540s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
541s Preparing to unpack .../221-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
541s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
541s Selecting previously unselected package r-cran-shiny.
541s Preparing to unpack .../222-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
541s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
541s Selecting previously unselected package r-cran-rmarkdown.
542s Preparing to unpack .../223-r-cran-rmarkdown_2.29+dfsg-1_all.deb ...
542s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ...
542s Selecting previously unselected package r-cran-bookdown.
542s Preparing to unpack .../224-r-cran-bookdown_0.42+dfsg-1_all.deb ...
542s Unpacking r-cran-bookdown (0.42+dfsg-1) ...
542s Selecting previously unselected package r-cran-biocmanager.
543s Preparing to unpack .../225-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
543s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
543s Selecting previously unselected package tex-common.
543s Preparing to unpack .../226-tex-common_6.19_all.deb ...
543s Unpacking tex-common (6.19) ...
543s Selecting previously unselected package t1utils.
544s Preparing to unpack .../227-t1utils_1.41-4build3_arm64.deb ...
544s Unpacking t1utils (1.41-4build3) ...
544s Selecting previously unselected package texlive-binaries.
545s Preparing to unpack .../228-texlive-binaries_2024.20240313.70630+ds-6_arm64.deb ...
545s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ...
545s Selecting previously unselected package texlive-base.
546s Preparing to unpack .../229-texlive-base_2024.20250309-1_all.deb ...
546s Unpacking texlive-base (2024.20250309-1) ...
547s Selecting previously unselected package texlive-latex-base.
548s Preparing to unpack .../230-texlive-latex-base_2024.20250309-1_all.deb ...
548s Unpacking texlive-latex-base (2024.20250309-1) ...
549s Selecting previously unselected package texlive-bibtex-extra.
550s Preparing to unpack .../231-texlive-bibtex-extra_2024.20250309-2_all.deb ...
550s Unpacking texlive-bibtex-extra (2024.20250309-2) ...
553s Selecting previously unselected package r-bioc-biocversion.
554s Preparing to unpack .../232-r-bioc-biocversion_3.20.0-2_all.deb ...
554s Unpacking r-bioc-biocversion (3.20.0-2) ...
554s Selecting previously unselected package r-bioc-biocstyle.
555s Preparing to unpack .../233-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ...
555s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ...
555s Selecting previously unselected package r-cran-lattice.
555s Preparing to unpack .../234-r-cran-lattice_0.22-7-1_arm64.deb ...
555s Unpacking r-cran-lattice (0.22-7-1) ...
555s Selecting previously unselected package r-cran-matrix.
556s Preparing to unpack .../235-r-cran-matrix_1.7-3-1_arm64.deb ...
556s Unpacking r-cran-matrix (1.7-3-1) ...
556s Selecting previously unselected package r-cran-matrixstats.
556s Preparing to unpack .../236-r-cran-matrixstats_1.5.0-1_arm64.deb ...
556s Unpacking r-cran-matrixstats (1.5.0-1) ...
557s Selecting previously unselected package r-bioc-matrixgenerics.
557s Preparing to unpack .../237-r-bioc-matrixgenerics_1.18.1-1_all.deb ...
557s Unpacking r-bioc-matrixgenerics (1.18.1-1) ...
557s Selecting previously unselected package r-cran-abind.
558s Preparing to unpack .../238-r-cran-abind_1.4-8-1_all.deb ...
558s Unpacking r-cran-abind (1.4-8-1) ...
558s Selecting previously unselected package r-bioc-s4arrays.
558s Preparing to unpack .../239-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ...
558s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ...
558s Selecting previously unselected package r-bioc-sparsearray.
559s Preparing to unpack .../240-r-bioc-sparsearray_1.6.2+dfsg-2_arm64.deb ...
559s Unpacking r-bioc-sparsearray (1.6.2+dfsg-2) ...
559s Selecting previously unselected package r-bioc-delayedarray.
561s Preparing to unpack .../241-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ...
561s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ...
561s Selecting previously unselected package r-cran-statmod.
562s Preparing to unpack .../242-r-cran-statmod_1.5.0-1_arm64.deb ...
562s Unpacking r-cran-statmod (1.5.0-1) ...
562s Selecting previously unselected package r-bioc-limma.
563s Preparing to unpack .../243-r-bioc-limma_3.62.2+dfsg-1_arm64.deb ...
563s Unpacking r-bioc-limma (3.62.2+dfsg-1) ...
563s Selecting previously unselected package r-cran-locfit.
563s Preparing to unpack .../244-r-cran-locfit_1.5-9.12-1_arm64.deb ...
563s Unpacking r-cran-locfit (1.5-9.12-1) ...
563s Selecting previously unselected package r-bioc-edger.
565s Preparing to unpack .../245-r-bioc-edger_4.4.2+dfsg-1_arm64.deb ...
565s Unpacking r-bioc-edger (4.4.2+dfsg-1) ...
565s Selecting previously unselected package r-bioc-genomicranges.
566s Preparing to unpack .../246-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ...
566s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ...
566s Selecting previously unselected package r-bioc-summarizedexperiment.
567s Preparing to unpack .../247-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ...
567s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
567s Selecting previously unselected package r-cran-bitops.
569s Preparing to unpack .../248-r-cran-bitops_1.0-9-1_arm64.deb ...
569s Unpacking r-cran-bitops (1.0-9-1) ...
569s Selecting previously unselected package r-bioc-rhtslib.
570s Preparing to unpack .../249-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ...
570s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ...
571s Selecting previously unselected package r-bioc-rsamtools.
571s Preparing to unpack .../250-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ...
571s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ...
571s Selecting previously unselected package r-bioc-genomicalignments.
571s Preparing to unpack .../251-r-bioc-genomicalignments_1.42.0-2_arm64.deb ...
571s Unpacking r-bioc-genomicalignments (1.42.0-2) ...
572s Selecting previously unselected package r-cran-xml.
572s Preparing to unpack .../252-r-cran-xml_3.99-0.18-1_arm64.deb ...
572s Unpacking r-cran-xml (3.99-0.18-1) ...
572s Selecting previously unselected package r-cran-rcurl.
573s Preparing to unpack .../253-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ...
573s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ...
573s Selecting previously unselected package r-cran-rjson.
574s Preparing to unpack .../254-r-cran-rjson_0.2.23-1_arm64.deb ...
574s Unpacking r-cran-rjson (0.2.23-1) ...
574s Selecting previously unselected package r-cran-restfulr.
574s Preparing to unpack .../255-r-cran-restfulr_0.0.15-1_arm64.deb ...
574s Unpacking r-cran-restfulr (0.0.15-1) ...
575s Selecting previously unselected package r-bioc-rtracklayer.
575s Preparing to unpack .../256-r-bioc-rtracklayer_1.66.0-3_arm64.deb ...
575s Unpacking r-bioc-rtracklayer (1.66.0-3) ...
575s Selecting previously unselected package r-bioc-genomicfeatures.
576s Preparing to unpack .../257-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ...
576s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
576s Selecting previously unselected package r-cran-mass.
577s Preparing to unpack .../258-r-cran-mass_7.3-65-1_arm64.deb ...
577s Unpacking r-cran-mass (7.3-65-1) ...
578s Selecting previously unselected package r-bioc-grohmm.
579s Preparing to unpack .../259-r-bioc-grohmm_1.40.3-2_arm64.deb ...
579s Unpacking r-bioc-grohmm (1.40.3-2) ...
579s Selecting previously unselected package r-bioc-org.hs.eg.db.
580s Preparing to unpack .../260-r-bioc-org.hs.eg.db_3.20.0-3_all.deb ...
580s Unpacking r-bioc-org.hs.eg.db (3.20.0-3) ...
584s Preparing to unpack .../261-zstd_1.5.7+dfsg-1_arm64.deb ...
584s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ...
585s Setting up libjs-json (0~20221030+~1.0.8-1) ...
585s Setting up javascript-common (12) ...
585s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
585s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
585s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
585s Setting up libncurses-dev:arm64 (6.5+20250216-2) ...
585s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
585s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
585s Setting up libzstd-dev:arm64 (1.5.7+dfsg-1) ...
585s Setting up libxpm4:arm64 (1:3.5.17-1build2) ...
585s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
585s Setting up libxi6:arm64 (2:1.8.2-1) ...
585s Setting up libxrender1:arm64 (1:0.9.12-1) ...
585s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
585s Setting up libjs-popper.js (1.16.1+ds-6) ...
585s Setting up gcc-14-base:arm64 (14.2.0-22ubuntu1) ...
585s Setting up libxcb-render0:arm64 (1.17.0-2) ...
585s Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
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585s Setting up libtirpc-common (1.3.6+ds-1) ...
585s Setting up libjs-lunr (2.3.9~dfsg-2) ...
585s Setting up unzip (6.0-28ubuntu6) ...
585s Setting up liblatex-tounicode-perl (0.55-1) ...
585s Setting up x11-common (1:7.7+23ubuntu4) ...
587s Setting up node-html5shiv (3.7.3+dfsg-5) ...
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587s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
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587s Setting up libreadline-dev:arm64 (8.2-6) ...
587s Setting up libgomp1:arm64 (15.1.0-1ubuntu1) ...
587s Setting up libjs-modernizr (3.13.0-0.1) ...
587s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
587s Setting up libpcre2-16-0:arm64 (10.45-1) ...
587s Setting up libjs-es5-shim (4.6.7-2) ...
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588s Setting up libblas3:arm64 (3.12.1-2) ...
588s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
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588s Setting up libatomic1:arm64 (15.1.0-1ubuntu1) ...
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588s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
588s Setting up libkpathsea6:arm64 (2024.20240313.70630+ds-6) ...
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588s Setting up libwebp7:arm64 (1.5.0-0.1) ...
588s Setting up liblzma-dev:arm64 (5.6.4-1ubuntu1) ...
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588s Setting up libpcre2-posix3:arm64 (10.45-1) ...
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593s Setting up libpangoft2-1.0-0:arm64 (1.56.3-1) ...
593s Setting up libpangocairo-1.0-0:arm64 (1.56.3-1) ...
593s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
593s Setting up libxmu6:arm64 (2:1.1.3-3build2) ...
593s Setting up g++-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
593s Setting up libxaw7:arm64 (2:1.0.16-1) ...
593s Setting up gcc-14 (14.2.0-22ubuntu1) ...
593s Setting up r-base-core (4.5.0-3) ...
594s Creating config file /etc/R/Renviron with new version
595s Setting up r-cran-crayon (1.5.3-1) ...
595s Setting up r-cran-sourcetools (0.1.7-1-1) ...
595s Setting up r-cran-futile.options (1.0.1-3build1) ...
595s Setting up r-cran-lattice (0.22-7-1) ...
595s Setting up r-cran-formatr (1.14-2) ...
595s Setting up r-cran-xml (3.99-0.18-1) ...
595s Setting up r-cran-locfit (1.5-9.12-1) ...
595s Setting up texlive-binaries (2024.20240313.70630+ds-6) ...
595s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
595s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
595s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
595s Setting up r-cran-statmod (1.5.0-1) ...
595s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
595s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
595s Setting up r-cran-commonmark (1.9.5-1) ...
595s Setting up g++-14 (14.2.0-22ubuntu1) ...
595s Setting up r-cran-rjson (0.2.23-1) ...
595s Setting up r-cran-r6 (2.6.1-1) ...
595s Setting up r-cran-pkgkitten (0.2.4-1) ...
595s Setting up gfortran-14 (14.2.0-22ubuntu1) ...
595s Setting up texlive-base (2024.20250309-1) ...
597s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
598s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
598s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
599s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
600s Setting up r-cran-magrittr (2.0.3-1) ...
600s Setting up r-cran-rappdirs (0.3.3-1) ...
600s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
600s Setting up r-cran-littler (0.3.21-1) ...
601s Setting up r-cran-bh (1.84.0-1) ...
601s Setting up r-cran-fs (1.6.5+dfsg-1) ...
601s Setting up r-cran-rcpp (1.0.14-1) ...
601s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
601s Setting up r-cran-codetools (0.2-20-1) ...
601s Setting up r-bioc-biocgenerics (0.52.0-2) ...
601s Setting up r-cran-rlang (1.1.5-3) ...
601s Setting up r-cran-matrixstats (1.5.0-1) ...
601s Setting up littler (0.3.21-1) ...
601s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
601s Setting up r-cran-xfun (0.51+dfsg-1) ...
601s Setting up r-cran-sys (3.4.3-1) ...
601s Setting up r-cran-plogr (0.2.0-3build1) ...
601s Setting up r-cran-withr (3.0.2+dfsg-1) ...
601s Setting up r-cran-mime (0.12-2) ...
601s Setting up r-cran-base64enc (0.1-3-3) ...
601s Setting up r-cran-abind (1.4-8-1) ...
601s Setting up r-cran-digest (0.6.37-1) ...
601s Setting up r-cran-yaml (2.3.10-1) ...
601s Setting up r-cran-lambda.r (1.2.4-2build1) ...
601s Setting up r-cran-evaluate (1.0.3-1) ...
601s Setting up r-cran-dbi (1.2.3-1) ...
601s Setting up r-cran-highr (0.11+dfsg-1) ...
601s Setting up r-cran-mass (7.3-65-1) ...
601s Setting up r-cran-snow (1:0.4.4-2) ...
601s Setting up r-cran-glue (1.8.0-1) ...
601s Setting up r-cran-bit (4.6.0+dfsg-1) ...
601s Setting up r-cran-xtable (1:1.8-4-2) ...
601s Setting up r-cran-cli (3.6.4-1) ...
601s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
601s Setting up r-cran-bitops (1.0-9-1) ...
601s Setting up r-bioc-biocversion (3.20.0-2) ...
601s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ...
601s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
601s Setting up gcc (4:14.2.0-1ubuntu1) ...
601s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
601s Setting up r-cran-askpass (1.2.1-1) ...
601s Setting up r-cran-fastmap (1.2.0-1) ...
601s Setting up r-cran-png (0.1-8-1build2) ...
601s Setting up r-bioc-biobase (2.66.0-2) ...
601s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
601s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
601s Setting up texlive-latex-base (2024.20250309-1) ...
601s Setting up r-cran-cpp11 (0.5.2-1) ...
601s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
601s Setting up r-cran-futile.logger (1.4.3-4build1) ...
601s Setting up r-bioc-limma (3.62.2+dfsg-1) ...
601s Setting up r-cran-later (1.4.1+dfsg-1) ...
601s Setting up r-cran-matrix (1.7-3-1) ...
601s Setting up r-cran-htmltools (0.5.8.1-1) ...
601s Setting up r-cran-tinytex (0.56-1) ...
601s Setting up r-cran-knitr (1.50+dfsg-1) ...
601s Setting up g++ (4:14.2.0-1ubuntu1) ...
601s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
601s Setting up r-cran-cachem (1.1.0-1) ...
601s Setting up r-cran-sass (0.4.9+dfsg-1) ...
601s Setting up build-essential (12.12ubuntu1) ...
601s Setting up r-bioc-iranges (2.40.1-3) ...
601s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
601s Setting up r-cran-restfulr (0.0.15-1) ...
601s Setting up r-cran-vctrs (0.6.5-1) ...
601s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
601s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
601s Setting up r-bioc-biocparallel (1.40.0-2) ...
601s Setting up r-bioc-edger (4.4.2+dfsg-1) ...
601s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
601s Setting up r-cran-fontawesome (0.5.3-1) ...
601s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
601s Setting up gfortran (4:14.2.0-1ubuntu1) ...
601s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
601s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
601s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
601s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
601s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
601s Setting up texlive-bibtex-extra (2024.20250309-2) ...
601s Setting up r-cran-httr (1.4.7+dfsg-1) ...
601s Setting up r-cran-memoise (2.0.1-1) ...
601s Setting up r-cran-promises (1.3.2+dfsg-1) ...
601s Setting up r-cran-blob (1.2.4-1) ...
601s Setting up r-bioc-xvector (0.46.0-2) ...
601s Setting up r-cran-rsqlite (2.3.9-1) ...
601s Setting up r-base-dev (4.5.0-3) ...
601s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
601s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ...
601s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
601s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
601s Setting up r-cran-bslib (0.9.0+dfsg-3) ...
601s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
601s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
601s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
601s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
601s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
601s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
601s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
601s Setting up r-cran-bookdown (0.42+dfsg-1) ...
601s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
601s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ...
601s Setting up r-bioc-annotationdbi (1.68.0-2) ...
601s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
601s Setting up r-bioc-genomicalignments (1.42.0-2) ...
601s Setting up r-bioc-org.hs.eg.db (3.20.0-3) ...
601s Setting up r-bioc-rtracklayer (1.66.0-3) ...
601s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
601s Setting up r-bioc-grohmm (1.40.3-2) ...
601s Processing triggers for libc-bin (2.41-6ubuntu1) ...
601s Processing triggers for man-db (2.13.0-1) ...
604s Processing triggers for install-info (7.1.1-1) ...
604s Processing triggers for tex-common (6.19) ...
606s Running updmap-sys. This may take some time... done.
607s Running mktexlsr /var/lib/texmf ... done.
607s Building format(s) --all.
649s 	This may take some time... done.
652s autopkgtest [14:48:11]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
652s autopkgtest [14:48:11]: test pkg-r-autopkgtest: [-----------------------
652s Test: Try to load the R library groHMM
653s 
653s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
653s Copyright (C) 2025 The R Foundation for Statistical Computing
653s Platform: aarch64-unknown-linux-gnu
653s 
653s R is free software and comes with ABSOLUTELY NO WARRANTY.
653s You are welcome to redistribute it under certain conditions.
653s Type 'license()' or 'licence()' for distribution details.
653s 
653s R is a collaborative project with many contributors.
653s Type 'contributors()' for more information and
653s 'citation()' on how to cite R or R packages in publications.
653s 
653s Type 'demo()' for some demos, 'help()' for on-line help, or
653s 'help.start()' for an HTML browser interface to help.
653s Type 'q()' to quit R.
653s 
653s > library('groHMM')
653s Loading required package: MASS
653s Loading required package: parallel
653s Loading required package: S4Vectors
653s Loading required package: stats4
653s Loading required package: BiocGenerics
654s 
654s Attaching package: ‘BiocGenerics’
654s 
654s The following objects are masked from ‘package:stats’:
654s 
654s     IQR, mad, sd, var, xtabs
654s 
654s The following objects are masked from ‘package:base’:
654s 
654s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
654s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
654s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
654s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
654s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
654s     table, tapply, union, unique, unsplit, which.max, which.min
654s 
654s 
654s Attaching package: ‘S4Vectors’
654s 
654s The following object is masked from ‘package:utils’:
654s 
654s     findMatches
654s 
654s The following objects are masked from ‘package:base’:
654s 
654s     expand.grid, I, unname
654s 
654s Loading required package: IRanges
655s Loading required package: GenomeInfoDb
655s Loading required package: GenomicRanges
656s Loading required package: GenomicAlignments
656s Loading required package: SummarizedExperiment
656s Loading required package: MatrixGenerics
656s Loading required package: matrixStats
656s 
656s Attaching package: ‘MatrixGenerics’
656s 
656s The following objects are masked from ‘package:matrixStats’:
656s 
656s     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
656s     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
656s     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
656s     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
656s     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
656s     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
656s     colWeightedMeans, colWeightedMedians, colWeightedSds,
656s     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
656s     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
656s     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
656s     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
656s     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
656s     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
656s     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
656s     rowWeightedSds, rowWeightedVars
656s 
656s Loading required package: Biobase
656s Welcome to Bioconductor
656s 
656s     Vignettes contain introductory material; view with
656s     'browseVignettes()'. To cite Bioconductor, see
656s     'citation("Biobase")', and for packages 'citation("pkgname")'.
656s 
656s 
656s Attaching package: ‘Biobase’
656s 
656s The following object is masked from ‘package:MatrixGenerics’:
656s 
656s     rowMedians
656s 
656s The following objects are masked from ‘package:matrixStats’:
656s 
656s     anyMissing, rowMedians
656s 
659s Loading required package: Biostrings
659s Loading required package: XVector
660s 
660s Attaching package: ‘Biostrings’
660s 
660s The following object is masked from ‘package:base’:
660s 
660s     strsplit
660s 
660s Loading required package: Rsamtools
661s Loading required package: rtracklayer
662s > 
663s Other tests are currently unsupported!
663s They will be progressively added.
663s autopkgtest [14:48:22]: test pkg-r-autopkgtest: -----------------------]
664s autopkgtest [14:48:23]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
664s pkg-r-autopkgtest    PASS
665s autopkgtest [14:48:24]: @@@@@@@@@@@@@@@@@@@@ summary
665s pkg-r-autopkgtest    PASS
722s nova [W] Using flock in prodstack6-arm64
722s flock: timeout while waiting to get lock
722s Creating nova instance adt-questing-arm64-r-bioc-grohmm-20250502-143719-juju-7f2275-prod-proposed-migration-environment-2-885a41db-1f99-44ab-b689-0eec930ad47d from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)...
722s nova [W] Timed out waiting for 190f3f92-cde5-486b-952a-84f9251a3c01 to get deleted.