0s autopkgtest [14:37:17]: starting date and time: 2025-05-02 14:37:17+0000
0s autopkgtest [14:37:17]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
0s autopkgtest [14:37:17]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ejae_fcj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck --apt-upgrade r-bioc-graph --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-10.secgroup --name adt-questing-arm64-r-bioc-graph-20250502-143717-juju-7f2275-prod-proposed-migration-environment-20-8638fc09-a21a-4a81-aaa4-0cb35771e050 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
83s autopkgtest [14:38:40]: testbed dpkg architecture: arm64
83s autopkgtest [14:38:40]: testbed apt version: 3.0.0
84s autopkgtest [14:38:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup
84s autopkgtest [14:38:41]: testbed release detected to be: None
84s autopkgtest [14:38:41]: updating testbed package index (apt update)
85s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
85s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
85s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
85s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
85s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2029 kB]
85s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [171 kB]
85s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB]
85s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [218 kB]
85s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1476 kB]
86s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB]
86s Fetched 4063 kB in 1s (3077 kB/s)
87s Reading package lists...
87s autopkgtest [14:38:44]: upgrading testbed (apt dist-upgrade and autopurge)
87s Reading package lists...
88s Building dependency tree...
88s Reading state information...
88s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
88s Starting 2 pkgProblemResolver with broken count: 0
88s Done
89s Entering ResolveByKeep
89s
89s Calculating upgrade...
90s The following packages will be upgraded:
90s htop libnpth0t64 libperl5.40 mokutil mtd-utils nano perl perl-base
90s perl-modules-5.40 usb.ids
90s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
90s Need to get 11.2 MB of archives.
90s After this operation, 727 kB of additional disk space will be used.
90s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libperl5.40 arm64 5.40.1-3 [4780 kB]
90s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl arm64 5.40.1-3 [262 kB]
90s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-base arm64 5.40.1-3 [1786 kB]
90s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-modules-5.40 all 5.40.1-3 [3217 kB]
90s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 libnpth0t64 arm64 1.8-3 [8818 B]
90s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB]
90s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 usb.ids all 2025.04.01-1 [223 kB]
90s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB]
90s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 mokutil arm64 0.7.2-1 [28.4 kB]
90s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB]
90s Fetched 11.2 MB in 0s (27.0 MB/s)
91s (Reading database ...
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 85224 files and directories currently installed.)
91s Preparing to unpack .../libperl5.40_5.40.1-3_arm64.deb ...
91s Unpacking libperl5.40:arm64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
91s Preparing to unpack .../perl_5.40.1-3_arm64.deb ...
91s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
91s Preparing to unpack .../perl-base_5.40.1-3_arm64.deb ...
91s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
91s Setting up perl-base (5.40.1-3) ...
91s (Reading database ...
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 85224 files and directories currently installed.)
91s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ...
91s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ...
91s Preparing to unpack .../libnpth0t64_1.8-3_arm64.deb ...
91s Unpacking libnpth0t64:arm64 (1.8-3) over (1.8-2) ...
91s Setting up libnpth0t64:arm64 (1.8-3) ...
92s (Reading database ...
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(Reading database ... 35%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 85224 files and directories currently installed.)
92s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ...
92s Unpacking nano (8.4-1) over (8.3-1) ...
92s Preparing to unpack .../usb.ids_2025.04.01-1_all.deb ...
92s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ...
92s Preparing to unpack .../htop_3.4.1-4_arm64.deb ...
92s Unpacking htop (3.4.1-4) over (3.4.0-2) ...
92s Preparing to unpack .../mokutil_0.7.2-1_arm64.deb ...
92s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ...
92s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ...
92s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ...
92s Setting up mokutil (0.7.2-1) ...
92s Setting up htop (3.4.1-4) ...
92s Setting up mtd-utils (1:2.3.0-1ubuntu1) ...
92s Setting up usb.ids (2025.04.01-1) ...
92s Setting up nano (8.4-1) ...
92s Installing new version of config file /etc/nanorc ...
92s Setting up perl-modules-5.40 (5.40.1-3) ...
92s Setting up libperl5.40:arm64 (5.40.1-3) ...
92s Setting up perl (5.40.1-3) ...
92s Processing triggers for libc-bin (2.41-6ubuntu1) ...
92s Processing triggers for man-db (2.13.0-1) ...
93s Processing triggers for install-info (7.1.1-1) ...
93s Reading package lists...
93s Building dependency tree...
93s Reading state information...
94s Starting pkgProblemResolver with broken count: 0
94s Starting 2 pkgProblemResolver with broken count: 0
94s Done
94s Solving dependencies...
95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
97s autopkgtest [14:38:54]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025
97s autopkgtest [14:38:54]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-graph
98s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-graph 1.84.1-1 (dsc) [2083 B]
98s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-graph 1.84.1-1 (tar) [1505 kB]
98s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-graph 1.84.1-1 (diff) [5492 B]
98s gpgv: Signature made Sun Jan 12 11:14:21 2025 UTC
98s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
98s gpgv: issuer "crusoe@debian.org"
98s gpgv: Can't check signature: No public key
98s dpkg-source: warning: cannot verify inline signature for ./r-bioc-graph_1.84.1-1.dsc: no acceptable signature found
98s autopkgtest [14:38:55]: testing package r-bioc-graph version 1.84.1-1
99s autopkgtest [14:38:56]: build not needed
100s autopkgtest [14:38:57]: test pkg-r-autopkgtest: preparing testbed
100s Reading package lists...
100s Building dependency tree...
100s Reading state information...
101s Starting pkgProblemResolver with broken count: 11
101s Starting 2 pkgProblemResolver with broken count: 11
101s Investigating (0) r-base-core:arm64 < none -> 4.5.0-3 @un puN Ib >
101s Broken r-base-core:arm64 Breaks on r-bioc-graph:arm64 < none -> 1.84.1-1 @un puN > (< 1.84.1-2~)
101s Considering r-bioc-graph:arm64 1 as a solution to r-base-core:arm64 68
101s Investigating (0) r-cran-shiny:arm64 < none -> 1.10.0+dfsg-2 @un puN Ib >
101s Broken r-cran-shiny:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 0.4.10)
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-shiny:arm64 48
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-shiny:arm64 48
101s Investigating (0) r-cran-sass:arm64 < none -> 0.4.9+dfsg-1 @un puN Ib >
101s Broken r-cran-sass:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 0.4.10)
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-sass:arm64 46
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-sass:arm64 46
101s Investigating (0) r-cran-bslib:arm64 < none -> 0.9.0+dfsg-1syncable1 @un puN Ib >
101s Broken r-cran-bslib:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-bslib:arm64 43
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-bslib:arm64 43
101s Investigating (0) r-cran-htmltools:arm64 < none -> 0.5.8.1-1 @un puN Ib >
101s Broken r-cran-htmltools:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 1.0.0)
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-htmltools:arm64 37
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-htmltools:arm64 37
101s Investigating (0) r-cran-fontawesome:arm64 < none -> 0.5.3-1 @un puN Ib >
101s Broken r-cran-fontawesome:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 1.0.6)
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-fontawesome:arm64 25
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-fontawesome:arm64 25
101s Investigating (0) r-cran-cachem:arm64 < none -> 1.1.0-1 @un puN Ib >
101s Broken r-cran-cachem:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-cachem:arm64 10
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-cachem:arm64 10
101s Investigating (0) r-cran-lifecycle:arm64 < none -> 1.0.4+dfsg-1 @un puN Ib >
101s Broken r-cran-lifecycle:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 1.1.0)
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-lifecycle:arm64 9
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-lifecycle:arm64 9
101s Investigating (0) r-cran-later:arm64 < none -> 1.4.1+dfsg-1 @un puN Ib >
101s Broken r-cran-later:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-later:arm64 8
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-later:arm64 8
101s Investigating (0) r-cran-promises:arm64 < none -> 1.3.2+dfsg-1 @un puN Ib >
101s Broken r-cran-promises:arm64 Depends on r-cran-rlang:arm64 < none @un pH >
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-promises:arm64 6
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-promises:arm64 6
101s Investigating (0) r-cran-memoise:arm64 < none -> 2.0.1-1 @un puN Ib >
101s Broken r-cran-memoise:arm64 Depends on r-cran-rlang:arm64 < none @un pH > (>= 0.4.10)
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-memoise:arm64 3
101s Considering r-cran-rlang:arm64 8 as a solution to r-cran-memoise:arm64 3
101s Done
101s Some packages could not be installed. This may mean that you have
101s requested an impossible situation or if you are using the unstable
101s distribution that some required packages have not yet been created
101s or been moved out of Incoming.
101s The following information may help to resolve the situation:
101s
101s The following packages have unmet dependencies:
101s r-base-core : Breaks: r-bioc-graph (< 1.84.1-2~) but 1.84.1-1 is to be installed
101s r-cran-bslib : Depends: r-cran-rlang but it is not installable
101s r-cran-cachem : Depends: r-cran-rlang but it is not installable
101s r-cran-fontawesome : Depends: r-cran-rlang (>= 1.0.6) but it is not installable
101s r-cran-htmltools : Depends: r-cran-rlang (>= 1.0.0) but it is not installable
101s r-cran-later : Depends: r-cran-rlang but it is not installable
101s r-cran-lifecycle : Depends: r-cran-rlang (>= 1.1.0) but it is not installable
101s r-cran-memoise : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
101s r-cran-promises : Depends: r-cran-rlang but it is not installable
101s r-cran-sass : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
101s r-cran-shiny : Depends: r-cran-rlang (>= 0.4.10) but it is not installable
101s E: Unable to correct problems, you have held broken packages.
101s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed
102s Reading package lists...
102s Building dependency tree...
102s Reading state information...
102s Starting pkgProblemResolver with broken count: 0
102s Starting 2 pkgProblemResolver with broken count: 0
102s Done
103s The following NEW packages will be installed:
103s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
103s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
103s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
103s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
103s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
103s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
103s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
103s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1
103s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev
103s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
103s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
103s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
103s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
103s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
103s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
103s libjs-popper.js libjs-prettify libjs-sifter.js
103s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
103s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
103s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
103s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
103s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
103s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6
103s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
103s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0
103s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev
103s libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv
103s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
103s r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocstyle
103s r-bioc-biocversion r-bioc-graph r-bioc-rbgl r-cran-base64enc r-cran-bh
103s r-cran-biocmanager r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli
103s r-cran-cluster r-cran-commonmark r-cran-crayon r-cran-digest r-cran-evaluate
103s r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr
103s r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr
103s r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise
103s r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs
103s r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass
103s r-cran-shiny r-cran-sourcetools r-cran-sparsem r-cran-tinytex r-cran-withr
103s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common
103s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip
103s x11-common xdg-utils zip zlib1g-dev
103s The following packages will be upgraded:
103s gcc-14-base gcc-15-base libatomic1 libgcc-s1 libstdc++6 libtirpc-common
103s libtirpc3t64 libzstd1 zstd
103s 9 upgraded, 203 newly installed, 0 to remove and 89 not upgraded.
103s Need to get 333 MB of archives.
103s After this operation, 1199 MB of additional disk space will be used.
103s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-15-base arm64 15.1.0-1ubuntu1 [54.5 kB]
103s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgcc-s1 arm64 15.1.0-1ubuntu1 [61.0 kB]
103s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libatomic1 arm64 15.1.0-1ubuntu1 [11.3 kB]
103s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libstdc++6 arm64 15.1.0-1ubuntu1 [761 kB]
103s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libzstd1 arm64 1.5.7+dfsg-1 [283 kB]
103s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-14-base arm64 14.2.0-22ubuntu1 [55.2 kB]
103s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtirpc-common all 1.3.6+ds-1 [8198 B]
103s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtirpc3t64 arm64 1.3.6+ds-1 [83.9 kB]
104s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB]
104s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
104s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [10.6 MB]
105s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 cpp-14 arm64 14.2.0-22ubuntu1 [1030 B]
105s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
105s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
105s Get:15 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libcc1-0 arm64 15.1.0-1ubuntu1 [49.1 kB]
105s Get:16 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgomp1 arm64 15.1.0-1ubuntu1 [147 kB]
105s Get:17 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libitm1 arm64 15.1.0-1ubuntu1 [28.1 kB]
105s Get:18 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libasan8 arm64 15.1.0-1ubuntu1 [2922 kB]
105s Get:19 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 liblsan0 arm64 15.1.0-1ubuntu1 [1317 kB]
105s Get:20 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtsan2 arm64 15.1.0-1ubuntu1 [2691 kB]
105s Get:21 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libubsan1 arm64 15.1.0-1ubuntu1 [1176 kB]
105s Get:22 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libhwasan0 arm64 15.1.0-1ubuntu1 [1639 kB]
105s Get:23 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgcc-14-dev arm64 14.2.0-22ubuntu1 [2593 kB]
105s Get:24 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [20.9 MB]
106s Get:25 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gcc-14 arm64 14.2.0-22ubuntu1 [536 kB]
106s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
106s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
106s Get:28 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libstdc++-14-dev arm64 14.2.0-22ubuntu1 [2820 kB]
106s Get:29 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [12.1 MB]
106s Get:30 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 g++-14 arm64 14.2.0-22ubuntu1 [24.0 kB]
106s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
106s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
106s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 build-essential arm64 12.12ubuntu1 [5082 B]
106s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
106s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
106s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
106s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB]
106s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB]
106s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig arm64 2.15.0-2.2ubuntu1 [191 kB]
106s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
106s Get:41 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-4 [119 kB]
106s Get:42 http://ftpmaster.internal/ubuntu questing/universe arm64 fonts-lmodern all 2.005-1 [4799 kB]
106s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
106s Get:44 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgfortran5 arm64 15.1.0-1ubuntu1 [444 kB]
106s Get:45 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libgfortran-14-dev arm64 14.2.0-22ubuntu1 [498 kB]
106s Get:46 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-22ubuntu1 [11.4 MB]
107s Get:47 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 gfortran-14 arm64 14.2.0-22ubuntu1 [14.4 kB]
107s Get:48 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
107s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
107s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
107s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 javascript-common all 12 [5216 B]
107s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libio-string-perl all 1.08-4 [11.1 kB]
107s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB]
107s Get:54 http://ftpmaster.internal/ubuntu questing/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
107s Get:55 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
107s Get:56 http://ftpmaster.internal/ubuntu questing/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
107s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libboost1.83-dev arm64 1.83.0-4.2ubuntu1 [10.7 MB]
107s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B]
107s Get:59 http://ftpmaster.internal/ubuntu questing/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
107s Get:60 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
107s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
107s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
107s Get:63 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libxrender1 arm64 1:0.9.12-1 [19.5 kB]
107s Get:64 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB]
107s Get:65 http://ftpmaster.internal/ubuntu questing/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
107s Get:66 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libdeflate0 arm64 1.23-2 [46.4 kB]
107s Get:67 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libdeflate-dev arm64 1.23-2 [53.6 kB]
107s Get:68 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
107s Get:69 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
107s Get:70 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB]
107s Get:71 http://ftpmaster.internal/ubuntu questing/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
107s Get:72 http://ftpmaster.internal/ubuntu questing/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
107s Get:73 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
107s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
107s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
107s Get:76 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
107s Get:77 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
107s Get:78 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 libjs-bootstrap all 3.4.1+dfsg-4 [129 kB]
107s Get:79 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
107s Get:80 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
107s Get:81 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
107s Get:82 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
107s Get:83 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
107s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
107s Get:85 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
107s Get:86 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
107s Get:87 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
107s Get:88 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
107s Get:89 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
107s Get:90 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
107s Get:91 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
107s Get:92 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
107s Get:93 http://ftpmaster.internal/ubuntu questing/universe arm64 libkpathsea6 arm64 2024.20240313.70630+ds-6 [64.4 kB]
107s Get:94 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
107s Get:95 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
107s Get:96 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
107s Get:97 http://ftpmaster.internal/ubuntu questing/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB]
107s Get:98 http://ftpmaster.internal/ubuntu questing/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB]
107s Get:99 http://ftpmaster.internal/ubuntu questing/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
107s Get:100 http://ftpmaster.internal/ubuntu questing/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
107s Get:101 http://ftpmaster.internal/ubuntu questing/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
107s Get:102 http://ftpmaster.internal/ubuntu questing/main arm64 libpango-1.0-0 arm64 1.56.3-1 [238 kB]
107s Get:103 http://ftpmaster.internal/ubuntu questing/main arm64 libpangoft2-1.0-0 arm64 1.56.3-1 [49.8 kB]
107s Get:104 http://ftpmaster.internal/ubuntu questing/main arm64 libpangocairo-1.0-0 arm64 1.56.3-1 [27.6 kB]
107s Get:105 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
107s Get:106 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
107s Get:107 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
107s Get:108 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
107s Get:109 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
107s Get:110 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
107s Get:111 http://ftpmaster.internal/ubuntu questing/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
107s Get:112 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
107s Get:113 http://ftpmaster.internal/ubuntu questing/main arm64 libpng-dev arm64 1.6.47-1.1 [269 kB]
107s Get:114 http://ftpmaster.internal/ubuntu questing/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB]
107s Get:115 http://ftpmaster.internal/ubuntu questing/universe arm64 libptexenc1 arm64 2024.20240313.70630+ds-6 [41.7 kB]
107s Get:116 http://ftpmaster.internal/ubuntu questing/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
107s Get:117 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
107s Get:118 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libsm6 arm64 2:1.2.6-1 [16.6 kB]
107s Get:119 http://ftpmaster.internal/ubuntu questing/universe arm64 libsynctex2 arm64 2024.20240313.70630+ds-6 [60.4 kB]
107s Get:120 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
108s Get:121 http://ftpmaster.internal/ubuntu questing/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB]
108s Get:122 http://ftpmaster.internal/ubuntu questing/universe arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-6 [122 kB]
108s Get:123 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
108s Get:124 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
108s Get:125 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtiff6 arm64 4.7.0-3ubuntu1 [197 kB]
108s Get:126 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
108s Get:127 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
108s Get:128 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
108s Get:129 http://ftpmaster.internal/ubuntu questing/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
108s Get:130 http://ftpmaster.internal/ubuntu questing/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB]
108s Get:131 http://ftpmaster.internal/ubuntu questing/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB]
108s Get:132 http://ftpmaster.internal/ubuntu questing/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB]
108s Get:133 http://ftpmaster.internal/ubuntu questing/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB]
108s Get:134 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libzstd-dev arm64 1.5.7+dfsg-1 [358 kB]
108s Get:135 http://ftpmaster.internal/ubuntu questing/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB]
108s Get:136 http://ftpmaster.internal/ubuntu questing/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
108s Get:137 http://ftpmaster.internal/ubuntu questing/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
108s Get:138 http://ftpmaster.internal/ubuntu questing/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
108s Get:139 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-base-core arm64 4.5.0-3 [28.7 MB]
108s Get:140 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-littler arm64 0.3.21-1 [99.7 kB]
108s Get:141 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 littler all 0.3.21-1 [2584 B]
108s Get:142 http://ftpmaster.internal/ubuntu questing/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
108s Get:143 http://ftpmaster.internal/ubuntu questing/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
108s Get:144 http://ftpmaster.internal/ubuntu questing/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
108s Get:145 http://ftpmaster.internal/ubuntu questing/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
108s Get:146 http://ftpmaster.internal/ubuntu questing/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB]
108s Get:147 http://ftpmaster.internal/ubuntu questing/main arm64 liblzma-dev arm64 5.6.4-1ubuntu1 [180 kB]
108s Get:148 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
108s Get:149 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
108s Get:150 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [202 kB]
108s Get:151 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-base-dev all 4.5.0-3 [4188 B]
108s Get:152 http://ftpmaster.internal/ubuntu questing/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
108s Get:153 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
108s Get:154 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
108s Get:155 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
108s Get:156 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB]
108s Get:157 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-rlang arm64 1.1.5-3 [1706 kB]
108s Get:158 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB]
108s Get:159 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
108s Get:160 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB]
108s Get:161 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
108s Get:162 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB]
109s Get:163 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
109s Get:164 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-knitr all 1.50+dfsg-1 [840 kB]
109s Get:165 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB]
109s Get:166 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
109s Get:167 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB]
109s Get:168 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB]
109s Get:169 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
109s Get:170 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
109s Get:171 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
109s Get:172 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB]
109s Get:173 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
109s Get:174 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB]
109s Get:175 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
109s Get:176 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB]
109s Get:177 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-cran-bslib all 0.9.0+dfsg-3 [4562 kB]
109s Get:178 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
109s Get:179 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-tinytex all 0.56-1 [148 kB]
109s Get:180 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB]
109s Get:181 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
109s Get:182 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
109s Get:183 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB]
109s Get:184 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
109s Get:185 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB]
109s Get:186 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB]
109s Get:187 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
109s Get:188 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
109s Get:189 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
109s Get:190 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
109s Get:191 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-commonmark arm64 1.9.5-1 [130 kB]
109s Get:192 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
109s Get:193 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
109s Get:194 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
109s Get:195 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
109s Get:196 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
109s Get:197 http://ftpmaster.internal/ubuntu questing/universe arm64 tex-common all 6.19 [29.8 kB]
109s Get:198 http://ftpmaster.internal/ubuntu questing/main arm64 t1utils arm64 1.41-4build3 [61.0 kB]
109s Get:199 http://ftpmaster.internal/ubuntu questing/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-6 [8349 kB]
109s Get:200 http://ftpmaster.internal/ubuntu questing/universe arm64 texlive-base all 2024.20250309-1 [22.7 MB]
110s Get:201 http://ftpmaster.internal/ubuntu questing/universe arm64 texlive-latex-base all 2024.20250309-1 [1276 kB]
110s Get:202 http://ftpmaster.internal/ubuntu questing/universe arm64 texlive-bibtex-extra all 2024.20250309-2 [79.3 MB]
111s Get:203 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
111s Get:204 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
111s Get:205 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-bioc-graph arm64 1.84.1-2 [1296 kB]
111s Get:206 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
111s Get:207 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-rbgl arm64 1.82.0+dfsg-2 [562 kB]
111s Get:208 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-cluster arm64 2.1.8.1-1 [569 kB]
111s Get:209 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-runit all 0.4.33-1 [377 kB]
111s Get:210 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-sparsem arm64 1.84-2-1 [812 kB]
111s Get:211 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB]
111s Get:212 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 zstd arm64 1.5.7+dfsg-1 [607 kB]
111s Preconfiguring packages ...
111s Fetched 333 MB in 8s (42.7 MB/s)
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112s Preparing to unpack .../gcc-15-base_15.1.0-1ubuntu1_arm64.deb ...
112s Unpacking gcc-15-base:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
112s Setting up gcc-15-base:arm64 (15.1.0-1ubuntu1) ...
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112s Preparing to unpack .../libgcc-s1_15.1.0-1ubuntu1_arm64.deb ...
112s Unpacking libgcc-s1:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
112s Setting up libgcc-s1:arm64 (15.1.0-1ubuntu1) ...
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112s Preparing to unpack .../libatomic1_15.1.0-1ubuntu1_arm64.deb ...
112s Unpacking libatomic1:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
112s Preparing to unpack .../libstdc++6_15.1.0-1ubuntu1_arm64.deb ...
112s Unpacking libstdc++6:arm64 (15.1.0-1ubuntu1) over (15-20250404-0ubuntu1) ...
112s Setting up libstdc++6:arm64 (15.1.0-1ubuntu1) ...
112s (Reading database ...
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112s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_arm64.deb ...
112s Unpacking libzstd1:arm64 (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ...
112s Setting up libzstd1:arm64 (1.5.7+dfsg-1) ...
112s (Reading database ...
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112s Preparing to unpack .../000-gcc-14-base_14.2.0-22ubuntu1_arm64.deb ...
112s Unpacking gcc-14-base:arm64 (14.2.0-22ubuntu1) over (14.2.0-19ubuntu2) ...
112s Preparing to unpack .../001-libtirpc-common_1.3.6+ds-1_all.deb ...
112s Unpacking libtirpc-common (1.3.6+ds-1) over (1.3.4+ds-1.3) ...
112s Preparing to unpack .../002-libtirpc3t64_1.3.6+ds-1_arm64.deb ...
112s Unpacking libtirpc3t64:arm64 (1.3.6+ds-1) over (1.3.4+ds-1.3) ...
112s Selecting previously unselected package libisl23:arm64.
112s Preparing to unpack .../003-libisl23_0.27-1_arm64.deb ...
112s Unpacking libisl23:arm64 (0.27-1) ...
112s Selecting previously unselected package libmpc3:arm64.
112s Preparing to unpack .../004-libmpc3_1.3.1-1build2_arm64.deb ...
112s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
112s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
112s Preparing to unpack .../005-cpp-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
112s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
112s Selecting previously unselected package cpp-14.
112s Preparing to unpack .../006-cpp-14_14.2.0-22ubuntu1_arm64.deb ...
112s Unpacking cpp-14 (14.2.0-22ubuntu1) ...
112s Selecting previously unselected package cpp-aarch64-linux-gnu.
112s Preparing to unpack .../007-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
112s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
112s Selecting previously unselected package cpp.
112s Preparing to unpack .../008-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
112s Unpacking cpp (4:14.2.0-1ubuntu1) ...
112s Selecting previously unselected package libcc1-0:arm64.
112s Preparing to unpack .../009-libcc1-0_15.1.0-1ubuntu1_arm64.deb ...
112s Unpacking libcc1-0:arm64 (15.1.0-1ubuntu1) ...
112s Selecting previously unselected package libgomp1:arm64.
112s Preparing to unpack .../010-libgomp1_15.1.0-1ubuntu1_arm64.deb ...
112s Unpacking libgomp1:arm64 (15.1.0-1ubuntu1) ...
113s Selecting previously unselected package libitm1:arm64.
113s Preparing to unpack .../011-libitm1_15.1.0-1ubuntu1_arm64.deb ...
113s Unpacking libitm1:arm64 (15.1.0-1ubuntu1) ...
113s Selecting previously unselected package libasan8:arm64.
113s Preparing to unpack .../012-libasan8_15.1.0-1ubuntu1_arm64.deb ...
113s Unpacking libasan8:arm64 (15.1.0-1ubuntu1) ...
113s Selecting previously unselected package liblsan0:arm64.
113s Preparing to unpack .../013-liblsan0_15.1.0-1ubuntu1_arm64.deb ...
113s Unpacking liblsan0:arm64 (15.1.0-1ubuntu1) ...
113s Selecting previously unselected package libtsan2:arm64.
113s Preparing to unpack .../014-libtsan2_15.1.0-1ubuntu1_arm64.deb ...
113s Unpacking libtsan2:arm64 (15.1.0-1ubuntu1) ...
113s Selecting previously unselected package libubsan1:arm64.
113s Preparing to unpack .../015-libubsan1_15.1.0-1ubuntu1_arm64.deb ...
113s Unpacking libubsan1:arm64 (15.1.0-1ubuntu1) ...
113s Selecting previously unselected package libhwasan0:arm64.
113s Preparing to unpack .../016-libhwasan0_15.1.0-1ubuntu1_arm64.deb ...
113s Unpacking libhwasan0:arm64 (15.1.0-1ubuntu1) ...
113s Selecting previously unselected package libgcc-14-dev:arm64.
113s Preparing to unpack .../017-libgcc-14-dev_14.2.0-22ubuntu1_arm64.deb ...
113s Unpacking libgcc-14-dev:arm64 (14.2.0-22ubuntu1) ...
113s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
113s Preparing to unpack .../018-gcc-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
113s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
113s Selecting previously unselected package gcc-14.
113s Preparing to unpack .../019-gcc-14_14.2.0-22ubuntu1_arm64.deb ...
113s Unpacking gcc-14 (14.2.0-22ubuntu1) ...
113s Selecting previously unselected package gcc-aarch64-linux-gnu.
113s Preparing to unpack .../020-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
113s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
113s Selecting previously unselected package gcc.
113s Preparing to unpack .../021-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
113s Unpacking gcc (4:14.2.0-1ubuntu1) ...
113s Selecting previously unselected package libstdc++-14-dev:arm64.
113s Preparing to unpack .../022-libstdc++-14-dev_14.2.0-22ubuntu1_arm64.deb ...
113s Unpacking libstdc++-14-dev:arm64 (14.2.0-22ubuntu1) ...
114s Selecting previously unselected package g++-14-aarch64-linux-gnu.
114s Preparing to unpack .../023-g++-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
114s Unpacking g++-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
114s Selecting previously unselected package g++-14.
114s Preparing to unpack .../024-g++-14_14.2.0-22ubuntu1_arm64.deb ...
114s Unpacking g++-14 (14.2.0-22ubuntu1) ...
114s Selecting previously unselected package g++-aarch64-linux-gnu.
114s Preparing to unpack .../025-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
114s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
114s Selecting previously unselected package g++.
114s Preparing to unpack .../026-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
114s Unpacking g++ (4:14.2.0-1ubuntu1) ...
114s Selecting previously unselected package build-essential.
114s Preparing to unpack .../027-build-essential_12.12ubuntu1_arm64.deb ...
114s Unpacking build-essential (12.12ubuntu1) ...
114s Selecting previously unselected package dctrl-tools.
114s Preparing to unpack .../028-dctrl-tools_2.24-3build3_arm64.deb ...
114s Unpacking dctrl-tools (2.24-3build3) ...
114s Selecting previously unselected package fonts-dejavu-mono.
114s Preparing to unpack .../029-fonts-dejavu-mono_2.37-8_all.deb ...
114s Unpacking fonts-dejavu-mono (2.37-8) ...
114s Selecting previously unselected package fonts-dejavu-core.
114s Preparing to unpack .../030-fonts-dejavu-core_2.37-8_all.deb ...
114s Unpacking fonts-dejavu-core (2.37-8) ...
114s Selecting previously unselected package fontconfig-config.
114s Preparing to unpack .../031-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ...
114s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
114s Selecting previously unselected package libfontconfig1:arm64.
114s Preparing to unpack .../032-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ...
114s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ...
114s Selecting previously unselected package fontconfig.
114s Preparing to unpack .../033-fontconfig_2.15.0-2.2ubuntu1_arm64.deb ...
114s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
114s Selecting previously unselected package fonts-font-awesome.
114s Preparing to unpack .../034-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
114s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
114s Selecting previously unselected package fonts-glyphicons-halflings.
114s Preparing to unpack .../035-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-4_all.deb ...
114s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-4) ...
114s Selecting previously unselected package fonts-lmodern.
115s Preparing to unpack .../036-fonts-lmodern_2.005-1_all.deb ...
115s Unpacking fonts-lmodern (2.005-1) ...
115s Selecting previously unselected package fonts-mathjax.
115s Preparing to unpack .../037-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
115s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
115s Selecting previously unselected package libgfortran5:arm64.
115s Preparing to unpack .../038-libgfortran5_15.1.0-1ubuntu1_arm64.deb ...
115s Unpacking libgfortran5:arm64 (15.1.0-1ubuntu1) ...
115s Selecting previously unselected package libgfortran-14-dev:arm64.
115s Preparing to unpack .../039-libgfortran-14-dev_14.2.0-22ubuntu1_arm64.deb ...
115s Unpacking libgfortran-14-dev:arm64 (14.2.0-22ubuntu1) ...
115s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
115s Preparing to unpack .../040-gfortran-14-aarch64-linux-gnu_14.2.0-22ubuntu1_arm64.deb ...
115s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
115s Selecting previously unselected package gfortran-14.
115s Preparing to unpack .../041-gfortran-14_14.2.0-22ubuntu1_arm64.deb ...
115s Unpacking gfortran-14 (14.2.0-22ubuntu1) ...
115s Selecting previously unselected package gfortran-aarch64-linux-gnu.
115s Preparing to unpack .../042-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
115s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
115s Selecting previously unselected package gfortran.
115s Preparing to unpack .../043-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
115s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
115s Selecting previously unselected package icu-devtools.
115s Preparing to unpack .../044-icu-devtools_76.1-1ubuntu2_arm64.deb ...
115s Unpacking icu-devtools (76.1-1ubuntu2) ...
115s Selecting previously unselected package javascript-common.
115s Preparing to unpack .../045-javascript-common_12_all.deb ...
115s Unpacking javascript-common (12) ...
115s Selecting previously unselected package libio-string-perl.
115s Preparing to unpack .../046-libio-string-perl_1.08-4_all.deb ...
115s Unpacking libio-string-perl (1.08-4) ...
115s Selecting previously unselected package liblatex-tounicode-perl.
115s Preparing to unpack .../047-liblatex-tounicode-perl_0.55-1_all.deb ...
115s Unpacking liblatex-tounicode-perl (0.55-1) ...
115s Selecting previously unselected package libbibtex-parser-perl.
115s Preparing to unpack .../048-libbibtex-parser-perl_1.05+dfsg-1_all.deb ...
115s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ...
115s Selecting previously unselected package libblas3:arm64.
115s Preparing to unpack .../049-libblas3_3.12.1-2_arm64.deb ...
115s Unpacking libblas3:arm64 (3.12.1-2) ...
115s Selecting previously unselected package libblas-dev:arm64.
115s Preparing to unpack .../050-libblas-dev_3.12.1-2_arm64.deb ...
115s Unpacking libblas-dev:arm64 (3.12.1-2) ...
115s Selecting previously unselected package libboost1.83-dev:arm64.
115s Preparing to unpack .../051-libboost1.83-dev_1.83.0-4.2ubuntu1_arm64.deb ...
115s Unpacking libboost1.83-dev:arm64 (1.83.0-4.2ubuntu1) ...
117s Selecting previously unselected package libboost-dev:arm64.
117s Preparing to unpack .../052-libboost-dev_1.83.0.2ubuntu1_arm64.deb ...
117s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ...
117s Selecting previously unselected package libbz2-dev:arm64.
117s Preparing to unpack .../053-libbz2-dev_1.0.8-6_arm64.deb ...
117s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
117s Selecting previously unselected package libpixman-1-0:arm64.
117s Preparing to unpack .../054-libpixman-1-0_0.44.0-3_arm64.deb ...
117s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
117s Selecting previously unselected package libxcb-render0:arm64.
117s Preparing to unpack .../055-libxcb-render0_1.17.0-2_arm64.deb ...
117s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
117s Selecting previously unselected package libxcb-shm0:arm64.
117s Preparing to unpack .../056-libxcb-shm0_1.17.0-2_arm64.deb ...
117s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
117s Selecting previously unselected package libxrender1:arm64.
117s Preparing to unpack .../057-libxrender1_1%3a0.9.12-1_arm64.deb ...
117s Unpacking libxrender1:arm64 (1:0.9.12-1) ...
117s Selecting previously unselected package libcairo2:arm64.
117s Preparing to unpack .../058-libcairo2_1.18.4-1_arm64.deb ...
117s Unpacking libcairo2:arm64 (1.18.4-1) ...
117s Selecting previously unselected package libdatrie1:arm64.
117s Preparing to unpack .../059-libdatrie1_0.2.13-3build1_arm64.deb ...
117s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
117s Selecting previously unselected package libdeflate0:arm64.
117s Preparing to unpack .../060-libdeflate0_1.23-2_arm64.deb ...
117s Unpacking libdeflate0:arm64 (1.23-2) ...
117s Selecting previously unselected package libdeflate-dev:arm64.
117s Preparing to unpack .../061-libdeflate-dev_1.23-2_arm64.deb ...
117s Unpacking libdeflate-dev:arm64 (1.23-2) ...
117s Selecting previously unselected package libgraphite2-3:arm64.
117s Preparing to unpack .../062-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
117s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
117s Selecting previously unselected package libharfbuzz0b:arm64.
117s Preparing to unpack .../063-libharfbuzz0b_10.2.0-1_arm64.deb ...
117s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
117s Selecting previously unselected package x11-common.
117s Preparing to unpack .../064-x11-common_1%3a7.7+23ubuntu4_all.deb ...
117s Unpacking x11-common (1:7.7+23ubuntu4) ...
117s Selecting previously unselected package libice6:arm64.
117s Preparing to unpack .../065-libice6_2%3a1.1.1-1_arm64.deb ...
117s Unpacking libice6:arm64 (2:1.1.1-1) ...
117s Selecting previously unselected package libicu-dev:arm64.
117s Preparing to unpack .../066-libicu-dev_76.1-1ubuntu2_arm64.deb ...
117s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
118s Selecting previously unselected package libjpeg-turbo8:arm64.
118s Preparing to unpack .../067-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
118s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
118s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
118s Preparing to unpack .../068-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
118s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
118s Selecting previously unselected package libjpeg8:arm64.
118s Preparing to unpack .../069-libjpeg8_8c-2ubuntu11_arm64.deb ...
118s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
118s Selecting previously unselected package libjpeg8-dev:arm64.
118s Preparing to unpack .../070-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
118s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
118s Selecting previously unselected package libjpeg-dev:arm64.
118s Preparing to unpack .../071-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
118s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
118s Selecting previously unselected package libjs-bootstrap.
118s Preparing to unpack .../072-libjs-bootstrap_3.4.1+dfsg-4_all.deb ...
118s Unpacking libjs-bootstrap (3.4.1+dfsg-4) ...
118s Selecting previously unselected package libjs-popper.js.
118s Preparing to unpack .../073-libjs-popper.js_1.16.1+ds-6_all.deb ...
118s Unpacking libjs-popper.js (1.16.1+ds-6) ...
118s Selecting previously unselected package libjs-bootstrap4.
118s Preparing to unpack .../074-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ...
118s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ...
118s Selecting previously unselected package libjs-d3.
118s Preparing to unpack .../075-libjs-d3_3.5.17-4_all.deb ...
118s Unpacking libjs-d3 (3.5.17-4) ...
118s Selecting previously unselected package libjs-es5-shim.
118s Preparing to unpack .../076-libjs-es5-shim_4.6.7-2_all.deb ...
118s Unpacking libjs-es5-shim (4.6.7-2) ...
118s Selecting previously unselected package libjs-highlight.js.
118s Preparing to unpack .../077-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
118s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
118s Selecting previously unselected package libjs-jquery.
118s Preparing to unpack .../078-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
118s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
118s Selecting previously unselected package libjs-jquery-datatables.
118s Preparing to unpack .../079-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
118s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
118s Selecting previously unselected package libjs-sifter.js.
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120s Selecting previously unselected package libxpm4:arm64.
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125s Selecting previously unselected package r-cran-magrittr.
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125s Selecting previously unselected package r-cran-promises.
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125s Selecting previously unselected package r-cran-httpuv.
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125s Selecting previously unselected package r-cran-xtable.
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125s Selecting previously unselected package r-cran-crayon.
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133s Creating config file /etc/R/Renviron with new version
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133s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
133s Setting up r-cran-cluster (2.1.8.1-1) ...
133s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-22ubuntu1) ...
133s Setting up r-cran-sparsem (1.84-2-1) ...
133s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
133s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
133s Setting up r-cran-commonmark (1.9.5-1) ...
133s Setting up g++-14 (14.2.0-22ubuntu1) ...
133s Setting up r-cran-r6 (2.6.1-1) ...
133s Setting up r-cran-pkgkitten (0.2.4-1) ...
133s Setting up gfortran-14 (14.2.0-22ubuntu1) ...
133s Setting up texlive-base (2024.20250309-1) ...
134s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
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134s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
134s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
135s Setting up r-cran-magrittr (2.0.3-1) ...
135s Setting up r-cran-rappdirs (0.3.3-1) ...
135s Setting up r-cran-littler (0.3.21-1) ...
135s Setting up r-cran-bh (1.84.0-1) ...
135s Setting up r-cran-fs (1.6.5+dfsg-1) ...
135s Setting up r-cran-rcpp (1.0.14-1) ...
135s Setting up r-bioc-biocgenerics (0.52.0-2) ...
135s Setting up r-cran-rlang (1.1.5-3) ...
135s Setting up littler (0.3.21-1) ...
135s Setting up r-cran-xfun (0.51+dfsg-1) ...
135s Setting up r-cran-withr (3.0.2+dfsg-1) ...
135s Setting up r-cran-mime (0.12-2) ...
135s Setting up r-cran-base64enc (0.1-3-3) ...
135s Setting up r-cran-digest (0.6.37-1) ...
135s Setting up r-cran-yaml (2.3.10-1) ...
135s Setting up r-cran-evaluate (1.0.3-1) ...
135s Setting up r-cran-highr (0.11+dfsg-1) ...
135s Setting up r-cran-glue (1.8.0-1) ...
135s Setting up r-cran-xtable (1:1.8-4-2) ...
135s Setting up r-cran-cli (3.6.4-1) ...
135s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
135s Setting up r-bioc-biocversion (3.20.0-2) ...
135s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
135s Setting up gcc (4:14.2.0-1ubuntu1) ...
135s Setting up r-cran-fastmap (1.2.0-1) ...
135s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
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135s Setting up r-cran-later (1.4.1+dfsg-1) ...
135s Setting up r-cran-htmltools (0.5.8.1-1) ...
135s Setting up r-cran-tinytex (0.56-1) ...
135s Setting up r-cran-knitr (1.50+dfsg-1) ...
135s Setting up g++ (4:14.2.0-1ubuntu1) ...
135s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
135s Setting up r-cran-cachem (1.1.0-1) ...
135s Setting up r-cran-sass (0.4.9+dfsg-1) ...
135s Setting up build-essential (12.12ubuntu1) ...
135s Setting up r-bioc-graph (1.84.1-2) ...
135s Setting up r-bioc-rbgl (1.82.0+dfsg-2) ...
135s Setting up r-cran-fontawesome (0.5.3-1) ...
135s Setting up gfortran (4:14.2.0-1ubuntu1) ...
135s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
135s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
135s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
135s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
135s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
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135s Setting up r-cran-memoise (2.0.1-1) ...
135s Setting up r-cran-promises (1.3.2+dfsg-1) ...
135s Setting up r-base-dev (4.5.0-3) ...
135s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
135s Setting up r-cran-bslib (0.9.0+dfsg-3) ...
135s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
135s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
135s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
135s Setting up r-cran-bookdown (0.42+dfsg-1) ...
135s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
135s Processing triggers for libc-bin (2.41-6ubuntu1) ...
135s Processing triggers for man-db (2.13.0-1) ...
136s Processing triggers for install-info (7.1.1-1) ...
136s Processing triggers for tex-common (6.19) ...
136s Running updmap-sys. This may take some time... done.
136s Running mktexlsr /var/lib/texmf ... done.
137s Building format(s) --all.
174s This may take some time... done.
174s autopkgtest [14:40:11]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
174s autopkgtest [14:40:11]: test pkg-r-autopkgtest: [-----------------------
175s Test: Try to load the R library graph
175s
175s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
175s Copyright (C) 2025 The R Foundation for Statistical Computing
175s Platform: aarch64-unknown-linux-gnu
175s
175s R is free software and comes with ABSOLUTELY NO WARRANTY.
175s You are welcome to redistribute it under certain conditions.
175s Type 'license()' or 'licence()' for distribution details.
175s
175s R is a collaborative project with many contributors.
175s Type 'contributors()' for more information and
175s 'citation()' on how to cite R or R packages in publications.
175s
175s Type 'demo()' for some demos, 'help()' for on-line help, or
175s 'help.start()' for an HTML browser interface to help.
175s Type 'q()' to quit R.
175s
175s > library('graph')
175s Loading required package: BiocGenerics
175s
175s Attaching package: ‘BiocGenerics’
175s
175s The following objects are masked from ‘package:stats’:
175s
175s IQR, mad, sd, var, xtabs
175s
175s The following objects are masked from ‘package:base’:
175s
175s anyDuplicated, aperm, append, as.data.frame, basename, cbind,
175s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
175s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
175s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
175s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
175s table, tapply, union, unique, unsplit, which.max, which.min
175s
175s >
175s Other tests are currently unsupported!
175s They will be progressively added.
175s autopkgtest [14:40:12]: test pkg-r-autopkgtest: -----------------------]
176s autopkgtest [14:40:13]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - -
176s pkg-r-autopkgtest PASS
176s autopkgtest [14:40:13]: @@@@@@@@@@@@@@@@@@@@ summary
176s pkg-r-autopkgtest PASS
192s nova [W] Using flock in prodstack7-arm64
192s Creating nova instance adt-questing-arm64-r-bioc-graph-20250502-143717-juju-7f2275-prod-proposed-migration-environment-20-8638fc09-a21a-4a81-aaa4-0cb35771e050 from image adt/ubuntu-questing-arm64-server-20250501.img (UUID 137c3127-57d2-4bf2-a106-d904ad6e43f4)...
192s nova [W] Timed out waiting for 98c506a3-7fee-4436-8108-109e4c98ce7a to get deleted.