0s autopkgtest [14:32:47]: starting date and time: 2025-05-02 14:32:47+0000 0s autopkgtest [14:32:47]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [14:32:47]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c0u7u_8p/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck --apt-upgrade r-bioc-affxparser --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-arm64-6.secgroup --name adt-questing-arm64-r-bioc-affxparser-20250502-143246-juju-7f2275-prod-proposed-migration-environment-20-69e328e1-6bb3-4ff1-9c1f-84304a88845c --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 69s autopkgtest [14:33:56]: testbed dpkg architecture: arm64 69s autopkgtest [14:33:56]: testbed apt version: 3.0.0 70s autopkgtest [14:33:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 70s autopkgtest [14:33:57]: testbed release detected to be: None 70s autopkgtest [14:33:57]: updating testbed package index (apt update) 70s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 71s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 71s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 71s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 71s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [171 kB] 71s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 71s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2029 kB] 71s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [218 kB] 71s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1476 kB] 71s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 71s Fetched 4063 kB in 1s (5070 kB/s) 72s Reading package lists... 73s autopkgtest [14:34:00]: upgrading testbed (apt dist-upgrade and autopurge) 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 74s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 74s Starting 2 pkgProblemResolver with broken count: 0 74s Done 74s Entering ResolveByKeep 75s 75s Calculating upgrade... 75s The following packages will be upgraded: 75s htop libnpth0t64 libperl5.40 mokutil mtd-utils nano perl perl-base 75s perl-modules-5.40 usb.ids 75s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Need to get 11.2 MB of archives. 75s After this operation, 727 kB of additional disk space will be used. 75s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libperl5.40 arm64 5.40.1-3 [4780 kB] 76s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl arm64 5.40.1-3 [262 kB] 76s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-base arm64 5.40.1-3 [1786 kB] 76s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 76s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 libnpth0t64 arm64 1.8-3 [8818 B] 76s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 76s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 usb.ids all 2025.04.01-1 [223 kB] 76s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 76s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 mokutil arm64 0.7.2-1 [28.4 kB] 76s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 76s Fetched 11.2 MB in 1s (22.5 MB/s) 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 76s Preparing to unpack .../libperl5.40_5.40.1-3_arm64.deb ... 76s Unpacking libperl5.40:arm64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 77s Preparing to unpack .../perl_5.40.1-3_arm64.deb ... 77s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 77s Preparing to unpack .../perl-base_5.40.1-3_arm64.deb ... 77s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 77s Setting up perl-base (5.40.1-3) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 77s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 77s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 77s Preparing to unpack .../libnpth0t64_1.8-3_arm64.deb ... 77s Unpacking libnpth0t64:arm64 (1.8-3) over (1.8-2) ... 77s Setting up libnpth0t64:arm64 (1.8-3) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 77s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 77s Unpacking nano (8.4-1) over (8.3-1) ... 78s Preparing to unpack .../usb.ids_2025.04.01-1_all.deb ... 78s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 78s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 78s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 78s Preparing to unpack .../mokutil_0.7.2-1_arm64.deb ... 78s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ... 78s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 78s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 78s Setting up mokutil (0.7.2-1) ... 78s Setting up htop (3.4.1-4) ... 78s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 78s Setting up usb.ids (2025.04.01-1) ... 78s Setting up nano (8.4-1) ... 78s Installing new version of config file /etc/nanorc ... 78s Setting up perl-modules-5.40 (5.40.1-3) ... 78s Setting up libperl5.40:arm64 (5.40.1-3) ... 78s Setting up perl (5.40.1-3) ... 78s Processing triggers for libc-bin (2.41-6ubuntu1) ... 78s Processing triggers for man-db (2.13.0-1) ... 79s Processing triggers for install-info (7.1.1-1) ... 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 80s Starting pkgProblemResolver with broken count: 0 80s Starting 2 pkgProblemResolver with broken count: 0 80s Done 80s Solving dependencies... 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s autopkgtest [14:34:10]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 83s autopkgtest [14:34:10]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-affxparser 84s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-affxparser 1.78.0-2 (dsc) [2123 B] 84s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-affxparser 1.78.0-2 (tar) [819 kB] 84s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-affxparser 1.78.0-2 (diff) [3400 B] 84s gpgv: Signature made Sat Jan 11 13:59:36 2025 UTC 84s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 84s gpgv: issuer "crusoe@debian.org" 84s gpgv: Can't check signature: No public key 84s dpkg-source: warning: cannot verify inline signature for ./r-bioc-affxparser_1.78.0-2.dsc: no acceptable signature found 84s autopkgtest [14:34:11]: testing package r-bioc-affxparser version 1.78.0-2 85s autopkgtest [14:34:12]: build not needed 88s autopkgtest [14:34:15]: test pkg-r-autopkgtest: preparing testbed 88s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Starting pkgProblemResolver with broken count: 0 89s Starting 2 pkgProblemResolver with broken count: 0 89s Done 90s The following NEW packages will be installed: 90s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 90s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 90s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 90s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 90s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 90s libasan8 libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 90s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 90s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 90s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 90s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 90s liblsan0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 90s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 90s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 90s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 90s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 90s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 90s libzstd-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 90s r-bioc-affxparser r-bioc-biocgenerics r-cran-r.methodss3 r-cran-r.oo 90s r-cran-r.utils unzip x11-common xdg-utils zip zlib1g-dev 90s 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. 90s Need to get 136 MB of archives. 90s After this operation, 423 MB of additional disk space will be used. 90s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB] 90s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 90s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [10.6 MB] 90s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14 arm64 14.2.0-19ubuntu2 [1026 B] 90s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 90s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 90s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 libcc1-0 arm64 15-20250404-0ubuntu1 [49.1 kB] 90s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 90s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libitm1 arm64 15-20250404-0ubuntu1 [27.8 kB] 91s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libasan8 arm64 15-20250404-0ubuntu1 [2922 kB] 91s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 liblsan0 arm64 15-20250404-0ubuntu1 [1318 kB] 91s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libtsan2 arm64 15-20250404-0ubuntu1 [2692 kB] 91s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libubsan1 arm64 15-20250404-0ubuntu1 [1177 kB] 91s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libhwasan0 arm64 15-20250404-0ubuntu1 [1640 kB] 91s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libgcc-14-dev arm64 14.2.0-19ubuntu2 [2593 kB] 91s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [20.9 MB] 91s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14 arm64 14.2.0-19ubuntu2 [529 kB] 91s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 91s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 91s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libstdc++-14-dev arm64 14.2.0-19ubuntu2 [2501 kB] 92s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [12.1 MB] 92s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 g++-14 arm64 14.2.0-19ubuntu2 [23.0 kB] 92s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 92s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 92s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 build-essential arm64 12.12ubuntu1 [5082 B] 92s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 92s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 92s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 92s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 92s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 92s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig arm64 2.15.0-2.2ubuntu1 [191 kB] 92s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 92s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran-14-dev arm64 14.2.0-19ubuntu2 [498 kB] 92s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [11.4 MB] 92s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14 arm64 14.2.0-19ubuntu2 [14.2 kB] 92s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 92s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 92s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 92s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 92s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 92s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 92s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 92s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 92s Get:44 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 92s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 92s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 92s Get:47 http://ftpmaster.internal/ubuntu questing/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 92s Get:48 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 92s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 92s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 92s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 92s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 92s Get:53 http://ftpmaster.internal/ubuntu questing/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 92s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 92s Get:55 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 92s Get:56 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 92s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 92s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 92s Get:59 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 92s Get:60 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 92s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 92s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 92s Get:63 http://ftpmaster.internal/ubuntu questing/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 92s Get:64 http://ftpmaster.internal/ubuntu questing/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 92s Get:65 http://ftpmaster.internal/ubuntu questing/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 92s Get:66 http://ftpmaster.internal/ubuntu questing/main arm64 libpango-1.0-0 arm64 1.56.3-1 [238 kB] 92s Get:67 http://ftpmaster.internal/ubuntu questing/main arm64 libpangoft2-1.0-0 arm64 1.56.3-1 [49.8 kB] 92s Get:68 http://ftpmaster.internal/ubuntu questing/main arm64 libpangocairo-1.0-0 arm64 1.56.3-1 [27.6 kB] 92s Get:69 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 92s Get:70 http://ftpmaster.internal/ubuntu questing/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 92s Get:71 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 92s Get:72 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 92s Get:73 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 92s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 92s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 92s Get:76 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 92s Get:77 http://ftpmaster.internal/ubuntu questing/main arm64 libpng-dev arm64 1.6.47-1.1 [269 kB] 92s Get:78 http://ftpmaster.internal/ubuntu questing/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 92s Get:79 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 92s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 92s Get:81 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 92s Get:82 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 92s Get:83 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 92s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 92s Get:85 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 92s Get:86 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 92s Get:87 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 92s Get:88 http://ftpmaster.internal/ubuntu questing/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 92s Get:89 http://ftpmaster.internal/ubuntu questing/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [353 kB] 92s Get:90 http://ftpmaster.internal/ubuntu questing/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 92s Get:91 http://ftpmaster.internal/ubuntu questing/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 92s Get:92 http://ftpmaster.internal/ubuntu questing/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 92s Get:93 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-base-core arm64 4.5.0-3 [28.7 MB] 93s Get:94 http://ftpmaster.internal/ubuntu questing/main arm64 liblzma-dev arm64 5.6.4-1ubuntu1 [180 kB] 93s Get:95 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 93s Get:96 http://ftpmaster.internal/ubuntu questing/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 93s Get:97 http://ftpmaster.internal/ubuntu questing/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 93s Get:98 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 r-base-dev all 4.5.0-3 [4188 B] 93s Get:99 http://ftpmaster.internal/ubuntu questing/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 93s Get:100 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 93s Get:101 http://ftpmaster.internal/ubuntu questing/universe arm64 r-bioc-affxparser arm64 1.78.0-2 [1002 kB] 93s Get:102 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 93s Get:103 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-r.oo all 1.27.0-1 [979 kB] 93s Get:104 http://ftpmaster.internal/ubuntu questing/universe arm64 r-cran-r.utils all 2.13.0-1 [1423 kB] 93s Preconfiguring packages ... 93s Fetched 136 MB in 3s (41.9 MB/s) 93s Selecting previously unselected package libisl23:arm64. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85225 files and directories currently installed.) 94s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 94s Unpacking libisl23:arm64 (0.27-1) ... 94s Selecting previously unselected package libmpc3:arm64. 94s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 94s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 94s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 94s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 94s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 94s Selecting previously unselected package cpp-14. 94s Preparing to unpack .../003-cpp-14_14.2.0-19ubuntu2_arm64.deb ... 94s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 94s Selecting previously unselected package cpp-aarch64-linux-gnu. 94s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 94s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 94s Selecting previously unselected package cpp. 94s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 94s Unpacking cpp (4:14.2.0-1ubuntu1) ... 94s Selecting previously unselected package libcc1-0:arm64. 94s Preparing to unpack .../006-libcc1-0_15-20250404-0ubuntu1_arm64.deb ... 94s Unpacking libcc1-0:arm64 (15-20250404-0ubuntu1) ... 94s Selecting previously unselected package libgomp1:arm64. 94s Preparing to unpack .../007-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 94s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 94s Selecting previously unselected package libitm1:arm64. 94s Preparing to unpack .../008-libitm1_15-20250404-0ubuntu1_arm64.deb ... 94s Unpacking libitm1:arm64 (15-20250404-0ubuntu1) ... 94s Selecting previously unselected package libasan8:arm64. 94s Preparing to unpack .../009-libasan8_15-20250404-0ubuntu1_arm64.deb ... 94s Unpacking libasan8:arm64 (15-20250404-0ubuntu1) ... 94s Selecting previously unselected package liblsan0:arm64. 94s Preparing to unpack .../010-liblsan0_15-20250404-0ubuntu1_arm64.deb ... 94s Unpacking liblsan0:arm64 (15-20250404-0ubuntu1) ... 94s Selecting previously unselected package libtsan2:arm64. 94s Preparing to unpack .../011-libtsan2_15-20250404-0ubuntu1_arm64.deb ... 94s Unpacking libtsan2:arm64 (15-20250404-0ubuntu1) ... 94s Selecting previously unselected package libubsan1:arm64. 94s Preparing to unpack .../012-libubsan1_15-20250404-0ubuntu1_arm64.deb ... 94s Unpacking libubsan1:arm64 (15-20250404-0ubuntu1) ... 94s Selecting previously unselected package libhwasan0:arm64. 94s Preparing to unpack .../013-libhwasan0_15-20250404-0ubuntu1_arm64.deb ... 94s Unpacking libhwasan0:arm64 (15-20250404-0ubuntu1) ... 94s Selecting previously unselected package libgcc-14-dev:arm64. 94s Preparing to unpack .../014-libgcc-14-dev_14.2.0-19ubuntu2_arm64.deb ... 94s Unpacking libgcc-14-dev:arm64 (14.2.0-19ubuntu2) ... 94s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 94s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 94s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 95s Selecting previously unselected package gcc-14. 95s Preparing to unpack .../016-gcc-14_14.2.0-19ubuntu2_arm64.deb ... 95s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 95s Selecting previously unselected package gcc-aarch64-linux-gnu. 95s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 95s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 95s Selecting previously unselected package gcc. 95s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 95s Unpacking gcc (4:14.2.0-1ubuntu1) ... 95s Selecting previously unselected package libstdc++-14-dev:arm64. 95s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-19ubuntu2_arm64.deb ... 95s Unpacking libstdc++-14-dev:arm64 (14.2.0-19ubuntu2) ... 95s Selecting previously unselected package g++-14-aarch64-linux-gnu. 95s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 95s Unpacking g++-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 95s Selecting previously unselected package g++-14. 95s Preparing to unpack .../021-g++-14_14.2.0-19ubuntu2_arm64.deb ... 95s Unpacking g++-14 (14.2.0-19ubuntu2) ... 95s Selecting previously unselected package g++-aarch64-linux-gnu. 95s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 95s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 95s Selecting previously unselected package g++. 95s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 95s Unpacking g++ (4:14.2.0-1ubuntu1) ... 95s Selecting previously unselected package build-essential. 95s Preparing to unpack .../024-build-essential_12.12ubuntu1_arm64.deb ... 95s Unpacking build-essential (12.12ubuntu1) ... 95s Selecting previously unselected package dctrl-tools. 95s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 95s Unpacking dctrl-tools (2.24-3build3) ... 95s Selecting previously unselected package fonts-dejavu-mono. 95s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 95s Unpacking fonts-dejavu-mono (2.37-8) ... 95s Selecting previously unselected package fonts-dejavu-core. 95s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 95s Unpacking fonts-dejavu-core (2.37-8) ... 96s Selecting previously unselected package fontconfig-config. 96s Preparing to unpack .../028-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 96s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 96s Selecting previously unselected package libfontconfig1:arm64. 96s Preparing to unpack .../029-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 96s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 96s Selecting previously unselected package fontconfig. 96s Preparing to unpack .../030-fontconfig_2.15.0-2.2ubuntu1_arm64.deb ... 96s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 96s Selecting previously unselected package libgfortran5:arm64. 96s Preparing to unpack .../031-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 96s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 96s Selecting previously unselected package libgfortran-14-dev:arm64. 96s Preparing to unpack .../032-libgfortran-14-dev_14.2.0-19ubuntu2_arm64.deb ... 96s Unpacking libgfortran-14-dev:arm64 (14.2.0-19ubuntu2) ... 96s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 96s Preparing to unpack .../033-gfortran-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 96s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 96s Selecting previously unselected package gfortran-14. 96s Preparing to unpack .../034-gfortran-14_14.2.0-19ubuntu2_arm64.deb ... 96s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 96s Selecting previously unselected package gfortran-aarch64-linux-gnu. 96s Preparing to unpack .../035-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 96s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 96s Selecting previously unselected package gfortran. 96s Preparing to unpack .../036-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 96s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 96s Selecting previously unselected package icu-devtools. 96s Preparing to unpack .../037-icu-devtools_76.1-1ubuntu2_arm64.deb ... 96s Unpacking icu-devtools (76.1-1ubuntu2) ... 96s Selecting previously unselected package libblas3:arm64. 96s Preparing to unpack .../038-libblas3_3.12.1-2_arm64.deb ... 96s Unpacking libblas3:arm64 (3.12.1-2) ... 96s Selecting previously unselected package libblas-dev:arm64. 96s Preparing to unpack .../039-libblas-dev_3.12.1-2_arm64.deb ... 96s Unpacking libblas-dev:arm64 (3.12.1-2) ... 96s Selecting previously unselected package libbz2-dev:arm64. 96s Preparing to unpack .../040-libbz2-dev_1.0.8-6_arm64.deb ... 96s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 96s Selecting previously unselected package libpixman-1-0:arm64. 96s Preparing to unpack .../041-libpixman-1-0_0.44.0-3_arm64.deb ... 96s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 96s Selecting previously unselected package libxcb-render0:arm64. 96s Preparing to unpack .../042-libxcb-render0_1.17.0-2_arm64.deb ... 96s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 96s Selecting previously unselected package libxcb-shm0:arm64. 96s Preparing to unpack .../043-libxcb-shm0_1.17.0-2_arm64.deb ... 96s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 96s Selecting previously unselected package libxrender1:arm64. 96s Preparing to unpack .../044-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 96s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 96s Selecting previously unselected package libcairo2:arm64. 96s Preparing to unpack .../045-libcairo2_1.18.4-1_arm64.deb ... 96s Unpacking libcairo2:arm64 (1.18.4-1) ... 97s Selecting previously unselected package libdatrie1:arm64. 97s Preparing to unpack .../046-libdatrie1_0.2.13-3build1_arm64.deb ... 97s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 97s Selecting previously unselected package libdeflate0:arm64. 97s Preparing to unpack .../047-libdeflate0_1.23-1_arm64.deb ... 97s Unpacking libdeflate0:arm64 (1.23-1) ... 97s Selecting previously unselected package libdeflate-dev:arm64. 97s Preparing to unpack .../048-libdeflate-dev_1.23-1_arm64.deb ... 97s Unpacking libdeflate-dev:arm64 (1.23-1) ... 97s Selecting previously unselected package libgraphite2-3:arm64. 97s Preparing to unpack .../049-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 97s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 97s Selecting previously unselected package libharfbuzz0b:arm64. 97s Preparing to unpack .../050-libharfbuzz0b_10.2.0-1_arm64.deb ... 97s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 97s Selecting previously unselected package x11-common. 97s Preparing to unpack .../051-x11-common_1%3a7.7+23ubuntu4_all.deb ... 97s Unpacking x11-common (1:7.7+23ubuntu4) ... 97s Selecting previously unselected package libice6:arm64. 97s Preparing to unpack .../052-libice6_2%3a1.1.1-1_arm64.deb ... 97s Unpacking libice6:arm64 (2:1.1.1-1) ... 97s Selecting previously unselected package libicu-dev:arm64. 97s Preparing to unpack .../053-libicu-dev_76.1-1ubuntu2_arm64.deb ... 97s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 97s Selecting previously unselected package libjpeg-turbo8:arm64. 97s Preparing to unpack .../054-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 97s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 97s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 97s Preparing to unpack .../055-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 97s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 97s Selecting previously unselected package libjpeg8:arm64. 97s Preparing to unpack .../056-libjpeg8_8c-2ubuntu11_arm64.deb ... 97s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 97s Selecting previously unselected package libjpeg8-dev:arm64. 97s Preparing to unpack .../057-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 97s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 97s Selecting previously unselected package libjpeg-dev:arm64. 97s Preparing to unpack .../058-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 97s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 97s Selecting previously unselected package liblapack3:arm64. 97s Preparing to unpack .../059-liblapack3_3.12.1-2_arm64.deb ... 97s Unpacking liblapack3:arm64 (3.12.1-2) ... 97s Selecting previously unselected package liblapack-dev:arm64. 97s Preparing to unpack .../060-liblapack-dev_3.12.1-2_arm64.deb ... 97s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 97s Selecting previously unselected package liblerc4:arm64. 97s Preparing to unpack .../061-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 97s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 97s Selecting previously unselected package libncurses-dev:arm64. 98s Preparing to unpack .../062-libncurses-dev_6.5+20250216-2_arm64.deb ... 98s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 98s Selecting previously unselected package libthai-data. 98s Preparing to unpack .../063-libthai-data_0.1.29-2build1_all.deb ... 98s Unpacking libthai-data (0.1.29-2build1) ... 98s Selecting previously unselected package libthai0:arm64. 98s Preparing to unpack .../064-libthai0_0.1.29-2build1_arm64.deb ... 98s Unpacking libthai0:arm64 (0.1.29-2build1) ... 98s Selecting previously unselected package libpango-1.0-0:arm64. 98s Preparing to unpack .../065-libpango-1.0-0_1.56.3-1_arm64.deb ... 98s Unpacking libpango-1.0-0:arm64 (1.56.3-1) ... 98s Selecting previously unselected package libpangoft2-1.0-0:arm64. 98s Preparing to unpack .../066-libpangoft2-1.0-0_1.56.3-1_arm64.deb ... 98s Unpacking libpangoft2-1.0-0:arm64 (1.56.3-1) ... 98s Selecting previously unselected package libpangocairo-1.0-0:arm64. 98s Preparing to unpack .../067-libpangocairo-1.0-0_1.56.3-1_arm64.deb ... 98s Unpacking libpangocairo-1.0-0:arm64 (1.56.3-1) ... 98s Selecting previously unselected package libpaper2:arm64. 98s Preparing to unpack .../068-libpaper2_2.2.5-0.3_arm64.deb ... 98s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 98s Selecting previously unselected package libpaper-utils. 98s Preparing to unpack .../069-libpaper-utils_2.2.5-0.3_arm64.deb ... 98s Unpacking libpaper-utils (2.2.5-0.3) ... 98s Selecting previously unselected package libpcre2-16-0:arm64. 98s Preparing to unpack .../070-libpcre2-16-0_10.45-1_arm64.deb ... 98s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 98s Selecting previously unselected package libpcre2-32-0:arm64. 98s Preparing to unpack .../071-libpcre2-32-0_10.45-1_arm64.deb ... 98s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 98s Selecting previously unselected package libpcre2-posix3:arm64. 98s Preparing to unpack .../072-libpcre2-posix3_10.45-1_arm64.deb ... 98s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 98s Selecting previously unselected package libpcre2-dev:arm64. 98s Preparing to unpack .../073-libpcre2-dev_10.45-1_arm64.deb ... 98s Unpacking libpcre2-dev:arm64 (10.45-1) ... 98s Selecting previously unselected package libpkgconf3:arm64. 98s Preparing to unpack .../074-libpkgconf3_1.8.1-4_arm64.deb ... 98s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 98s Selecting previously unselected package zlib1g-dev:arm64. 98s Preparing to unpack .../075-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 98s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 98s Selecting previously unselected package libpng-dev:arm64. 98s Preparing to unpack .../076-libpng-dev_1.6.47-1.1_arm64.deb ... 98s Unpacking libpng-dev:arm64 (1.6.47-1.1) ... 98s Selecting previously unselected package libreadline-dev:arm64. 98s Preparing to unpack .../077-libreadline-dev_8.2-6_arm64.deb ... 98s Unpacking libreadline-dev:arm64 (8.2-6) ... 98s Selecting previously unselected package libsharpyuv0:arm64. 98s Preparing to unpack .../078-libsharpyuv0_1.5.0-0.1_arm64.deb ... 98s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 98s Selecting previously unselected package libsm6:arm64. 98s Preparing to unpack .../079-libsm6_2%3a1.2.4-1_arm64.deb ... 98s Unpacking libsm6:arm64 (2:1.2.4-1) ... 98s Selecting previously unselected package libtcl8.6:arm64. 98s Preparing to unpack .../080-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 98s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 98s Selecting previously unselected package libjbig0:arm64. 98s Preparing to unpack .../081-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 98s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 98s Selecting previously unselected package libwebp7:arm64. 98s Preparing to unpack .../082-libwebp7_1.5.0-0.1_arm64.deb ... 98s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 98s Selecting previously unselected package libtiff6:arm64. 98s Preparing to unpack .../083-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 98s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 98s Selecting previously unselected package libxft2:arm64. 98s Preparing to unpack .../084-libxft2_2.3.6-1build1_arm64.deb ... 98s Unpacking libxft2:arm64 (2.3.6-1build1) ... 98s Selecting previously unselected package libxss1:arm64. 98s Preparing to unpack .../085-libxss1_1%3a1.2.3-1build3_arm64.deb ... 98s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 98s Selecting previously unselected package libtk8.6:arm64. 98s Preparing to unpack .../086-libtk8.6_8.6.16-1_arm64.deb ... 98s Unpacking libtk8.6:arm64 (8.6.16-1) ... 98s Selecting previously unselected package libxt6t64:arm64. 98s Preparing to unpack .../087-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 98s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 98s Selecting previously unselected package libzstd-dev:arm64. 99s Preparing to unpack .../088-libzstd-dev_1.5.6+dfsg-2_arm64.deb ... 99s Unpacking libzstd-dev:arm64 (1.5.6+dfsg-2) ... 99s Selecting previously unselected package zip. 99s Preparing to unpack .../089-zip_3.0-14ubuntu2_arm64.deb ... 99s Unpacking zip (3.0-14ubuntu2) ... 99s Selecting previously unselected package unzip. 99s Preparing to unpack .../090-unzip_6.0-28ubuntu6_arm64.deb ... 99s Unpacking unzip (6.0-28ubuntu6) ... 99s Selecting previously unselected package xdg-utils. 99s Preparing to unpack .../091-xdg-utils_1.2.1-2ubuntu1_all.deb ... 99s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 99s Selecting previously unselected package r-base-core. 99s Preparing to unpack .../092-r-base-core_4.5.0-3_arm64.deb ... 99s Unpacking r-base-core (4.5.0-3) ... 99s Selecting previously unselected package liblzma-dev:arm64. 99s Preparing to unpack .../093-liblzma-dev_5.6.4-1ubuntu1_arm64.deb ... 99s Unpacking liblzma-dev:arm64 (5.6.4-1ubuntu1) ... 99s Selecting previously unselected package pkgconf-bin. 99s Preparing to unpack .../094-pkgconf-bin_1.8.1-4_arm64.deb ... 99s Unpacking pkgconf-bin (1.8.1-4) ... 99s Selecting previously unselected package pkgconf:arm64. 99s Preparing to unpack .../095-pkgconf_1.8.1-4_arm64.deb ... 99s Unpacking pkgconf:arm64 (1.8.1-4) ... 99s Selecting previously unselected package libtirpc-dev:arm64. 99s Preparing to unpack .../096-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 99s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 99s Selecting previously unselected package r-base-dev. 99s Preparing to unpack .../097-r-base-dev_4.5.0-3_all.deb ... 99s Unpacking r-base-dev (4.5.0-3) ... 99s Selecting previously unselected package pkg-r-autopkgtest. 99s Preparing to unpack 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Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 99s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 99s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 99s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 99s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 99s Setting up libzstd-dev:arm64 (1.5.6+dfsg-2) ... 99s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 99s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 99s Setting up libxcb-render0:arm64 (1.17.0-2) ... 99s Setting up unzip (6.0-28ubuntu6) ... 99s Setting up x11-common (1:7.7+23ubuntu4) ... 100s Setting up libdeflate0:arm64 (1.23-1) ... 100s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 100s Setting up libreadline-dev:arm64 (8.2-6) ... 100s Setting up libgomp1:arm64 (15-20250404-0ubuntu1) ... 100s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 100s Setting up libpcre2-16-0:arm64 (10.45-1) ... 100s Setting up zip (3.0-14ubuntu2) ... 100s Setting up libpcre2-32-0:arm64 (10.45-1) ... 100s Setting up libblas3:arm64 (3.12.1-2) ... 100s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 100s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 100s Setting up libpkgconf3:arm64 (1.8.1-4) ... 100s Setting up fonts-dejavu-mono (2.37-8) ... 100s Setting up libmpc3:arm64 (1.3.1-1build2) ... 100s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 100s Setting up icu-devtools (76.1-1ubuntu2) ... 100s Setting up fonts-dejavu-core (2.37-8) ... 100s Setting up pkgconf-bin (1.8.1-4) ... 100s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 100s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 100s Setting up libwebp7:arm64 (1.5.0-0.1) ... 100s Setting up liblzma-dev:arm64 (5.6.4-1ubuntu1) ... 100s Setting up libubsan1:arm64 (15-20250404-0ubuntu1) ... 100s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 100s Setting up libpcre2-posix3:arm64 (10.45-1) ... 100s Setting up libhwasan0:arm64 (15-20250404-0ubuntu1) ... 100s Setting up libasan8:arm64 (15-20250404-0ubuntu1) ... 100s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 100s Setting up libthai-data (0.1.29-2build1) ... 100s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 100s Setting up libpaper2:arm64 (2.2.5-0.3) ... 100s Setting up libtsan2:arm64 (15-20250404-0ubuntu1) ... 100s Setting up libisl23:arm64 (0.27-1) ... 100s Setting up libdeflate-dev:arm64 (1.23-1) ... 100s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 100s Setting up xdg-utils (1.2.1-2ubuntu1) ... 100s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 100s Setting up libcc1-0:arm64 (15-20250404-0ubuntu1) ... 100s Setting up liblsan0:arm64 (15-20250404-0ubuntu1) ... 100s Setting up libblas-dev:arm64 (3.12.1-2) ... 100s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 100s Setting up dctrl-tools (2.24-3build3) ... 100s Setting up libitm1:arm64 (15-20250404-0ubuntu1) ... 100s Setting up libbz2-dev:arm64 (1.0.8-6) ... 100s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 100s Setting up libice6:arm64 (2:1.1.1-1) ... 100s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 100s Setting up liblapack3:arm64 (3.12.1-2) ... 100s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 100s Setting up libpcre2-dev:arm64 (10.45-1) ... 100s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 100s Setting up libpng-dev:arm64 (1.6.47-1.1) ... 100s Setting up libpaper-utils (2.2.5-0.3) ... 100s Setting up pkgconf:arm64 (1.8.1-4) ... 100s Setting up libthai0:arm64 (0.1.29-2build1) ... 100s Setting up liblapack-dev:arm64 (3.12.1-2) ... 100s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 100s Setting up cpp-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 100s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 100s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 100s Setting up libgcc-14-dev:arm64 (14.2.0-19ubuntu2) ... 100s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 100s Setting up libstdc++-14-dev:arm64 (14.2.0-19ubuntu2) ... 100s Setting up libsm6:arm64 (2:1.2.4-1) ... 100s Setting up libgfortran-14-dev:arm64 (14.2.0-19ubuntu2) ... 100s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 102s Regenerating fonts cache... done. 102s Setting up libxft2:arm64 (2.3.6-1build1) ... 102s Setting up libtk8.6:arm64 (8.6.16-1) ... 102s Setting up libpango-1.0-0:arm64 (1.56.3-1) ... 102s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 102s Setting up libcairo2:arm64 (1.18.4-1) ... 102s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 102s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 102s Setting up cpp-14 (14.2.0-19ubuntu2) ... 102s Setting up cpp (4:14.2.0-1ubuntu1) ... 102s Setting up gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 102s Setting up libpangoft2-1.0-0:arm64 (1.56.3-1) ... 102s Setting up libpangocairo-1.0-0:arm64 (1.56.3-1) ... 102s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 102s Setting up g++-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 102s Setting up gcc-14 (14.2.0-19ubuntu2) ... 102s Setting up r-base-core (4.5.0-3) ... 102s Creating config file /etc/R/Renviron with new version 102s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 102s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 102s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 102s Setting up g++-14 (14.2.0-19ubuntu2) ... 102s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 102s Setting up r-bioc-biocgenerics (0.52.0-2) ... 102s Setting up gcc (4:14.2.0-1ubuntu1) ... 102s Setting up r-bioc-affxparser (1.78.0-2) ... 102s Setting up r-cran-r.methodss3 (1.8.2-1) ... 102s Setting up g++ (4:14.2.0-1ubuntu1) ... 102s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 102s Setting up build-essential (12.12ubuntu1) ... 102s Setting up r-cran-r.oo (1.27.0-1) ... 102s Setting up gfortran (4:14.2.0-1ubuntu1) ... 102s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 102s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 102s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 102s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 102s Setting up r-cran-r.utils (2.13.0-1) ... 102s Setting up r-base-dev (4.5.0-3) ... 102s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 102s Processing triggers for libc-bin (2.41-6ubuntu1) ... 102s Processing triggers for man-db (2.13.0-1) ... 103s Processing triggers for install-info (7.1.1-1) ... 104s autopkgtest [14:34:31]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 104s autopkgtest [14:34:31]: test pkg-r-autopkgtest: [----------------------- 105s Test: Try to load the R library affxparser 105s 105s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" 105s Copyright (C) 2025 The R Foundation for Statistical Computing 105s Platform: aarch64-unknown-linux-gnu 105s 105s R is free software and comes with ABSOLUTELY NO WARRANTY. 105s You are welcome to redistribute it under certain conditions. 105s Type 'license()' or 'licence()' for distribution details. 105s 105s R is a collaborative project with many contributors. 105s Type 'contributors()' for more information and 105s 'citation()' on how to cite R or R packages in publications. 105s 105s Type 'demo()' for some demos, 'help()' for on-line help, or 105s 'help.start()' for an HTML browser interface to help. 105s Type 'q()' to quit R. 105s 105s > library('affxparser') 105s > 105s Other tests are currently unsupported! 105s They will be progressively added. 105s autopkgtest [14:34:32]: test pkg-r-autopkgtest: -----------------------] 106s pkg-r-autopkgtest PASS 106s autopkgtest [14:34:33]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 106s autopkgtest [14:34:33]: @@@@@@@@@@@@@@@@@@@@ summary 106s pkg-r-autopkgtest PASS 121s nova [W] Using flock in prodstack7-arm64 121s Creating nova instance adt-questing-arm64-r-bioc-affxparser-20250502-143246-juju-7f2275-prod-proposed-migration-environment-20-69e328e1-6bb3-4ff1-9c1f-84304a88845c from image adt/ubuntu-questing-arm64-server-20250501.img (UUID 137c3127-57d2-4bf2-a106-d904ad6e43f4)... 121s nova [W] Timed out waiting for 36df1964-cb49-4ed5-8389-a66503c092f2 to get deleted.