0s autopkgtest [14:05:01]: starting date and time: 2025-05-02 14:05:01+0000 0s autopkgtest [14:05:01]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [14:05:01]: host juju-7f2275-prod-proposed-migration-environment-21; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cgrzwpsn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest --apt-upgrade python-pyfaidx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.3.5-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-21@sto01-arm64-6.secgroup --name adt-questing-arm64-python-pyfaidx-20250502-140501-juju-7f2275-prod-proposed-migration-environment-21-e2cc5978-b384-44d9-ae94-392b30c78539 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-21 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 82s autopkgtest [14:06:23]: testbed dpkg architecture: arm64 82s autopkgtest [14:06:23]: testbed apt version: 3.0.0 83s autopkgtest [14:06:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 83s autopkgtest [14:06:24]: testbed release detected to be: None 83s autopkgtest [14:06:24]: updating testbed package index (apt update) 84s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 84s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 84s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 84s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 84s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 84s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [171 kB] 84s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2029 kB] 84s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [218 kB] 84s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1476 kB] 84s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 84s Fetched 4063 kB in 1s (4988 kB/s) 85s Reading package lists... 86s autopkgtest [14:06:27]: upgrading testbed (apt dist-upgrade and autopurge) 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 87s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 87s Starting 2 pkgProblemResolver with broken count: 0 87s Done 87s Entering ResolveByKeep 88s 88s Calculating upgrade... 88s The following packages will be upgraded: 88s htop libnpth0t64 libperl5.40 mokutil mtd-utils nano perl perl-base 88s perl-modules-5.40 usb.ids 88s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Need to get 11.2 MB of archives. 88s After this operation, 727 kB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libperl5.40 arm64 5.40.1-3 [4780 kB] 88s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl arm64 5.40.1-3 [262 kB] 88s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-base arm64 5.40.1-3 [1786 kB] 88s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 89s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 libnpth0t64 arm64 1.8-3 [8818 B] 89s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 89s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 usb.ids all 2025.04.01-1 [223 kB] 89s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 89s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 mokutil arm64 0.7.2-1 [28.4 kB] 89s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 89s Fetched 11.2 MB in 0s (23.7 MB/s) 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 89s Preparing to unpack .../libperl5.40_5.40.1-3_arm64.deb ... 89s Unpacking libperl5.40:arm64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 89s Preparing to unpack .../perl_5.40.1-3_arm64.deb ... 89s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 89s Preparing to unpack .../perl-base_5.40.1-3_arm64.deb ... 89s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 90s Setting up perl-base (5.40.1-3) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 90s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 90s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 90s Preparing to unpack .../libnpth0t64_1.8-3_arm64.deb ... 90s Unpacking libnpth0t64:arm64 (1.8-3) over (1.8-2) ... 90s Setting up libnpth0t64:arm64 (1.8-3) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 90s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 90s Unpacking nano (8.4-1) over (8.3-1) ... 90s Preparing to unpack .../usb.ids_2025.04.01-1_all.deb ... 90s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 90s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 90s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 90s Preparing to unpack .../mokutil_0.7.2-1_arm64.deb ... 90s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ... 90s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 90s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 90s Setting up mokutil (0.7.2-1) ... 90s Setting up htop (3.4.1-4) ... 90s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 90s Setting up usb.ids (2025.04.01-1) ... 90s Setting up nano (8.4-1) ... 90s Installing new version of config file /etc/nanorc ... 90s Setting up perl-modules-5.40 (5.40.1-3) ... 90s Setting up libperl5.40:arm64 (5.40.1-3) ... 90s Setting up perl (5.40.1-3) ... 90s Processing triggers for libc-bin (2.41-6ubuntu1) ... 90s Processing triggers for man-db (2.13.0-1) ... 91s Processing triggers for install-info (7.1.1-1) ... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Starting pkgProblemResolver with broken count: 0 92s Starting 2 pkgProblemResolver with broken count: 0 92s Done 93s Solving dependencies... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s autopkgtest [14:06:36]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 95s autopkgtest [14:06:36]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyfaidx 97s Get:1 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (dsc) [2544 B] 97s Get:2 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (tar) [96.5 kB] 97s Get:3 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (diff) [7096 B] 97s gpgv: Signature made Wed Oct 16 19:20:44 2024 UTC 97s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 97s gpgv: issuer "emollier@debian.org" 97s gpgv: Can't check signature: No public key 97s dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.3-1.dsc: no acceptable signature found 97s autopkgtest [14:06:38]: testing package python-pyfaidx version 0.8.1.3-1 97s autopkgtest [14:06:38]: build not needed 98s autopkgtest [14:06:39]: test run-unit-test: preparing testbed 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Starting pkgProblemResolver with broken count: 0 98s Starting 2 pkgProblemResolver with broken count: 0 99s Done 99s The following NEW packages will be installed: 99s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 99s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 99s libgomp1 libgraphite2-3 libharfbuzz0b libhtscodecs2 libimagequant0 libjbig0 99s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 99s libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 99s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python-pyfaidx-examples 99s python3-all python3-biopython python3-cairo python3-freetype 99s python3-importlib-metadata python3-iniconfig python3-numpy python3-numpy-dev 99s python3-pil python3-pluggy python3-pyfaidx python3-pytest python3-reportlab 99s python3-rlpycairo sgml-base tabix w3c-sgml-lib x11-common xfonts-encodings 99s xfonts-utils xml-core 99s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 27.8 MB of archives. 99s After this operation, 88.5 MB of additional disk space will be used. 99s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 99s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 99s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 99s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 100s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 100s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 sgml-base all 1.31 [11.4 kB] 100s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 100s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 100s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 100s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 100s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 100s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 100s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 100s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 100s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 100s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 100s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 100s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 100s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 101s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 101s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 101s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 101s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 101s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 101s Get:25 http://ftpmaster.internal/ubuntu questing/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 101s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 101s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 101s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 101s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 101s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 101s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 101s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 101s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 101s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 101s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 101s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 101s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 101s Get:38 http://ftpmaster.internal/ubuntu questing/universe arm64 python-pyfaidx-examples all 0.8.1.3-1 [38.6 kB] 101s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 python3-all arm64 3.13.3-1 [880 B] 101s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 101s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 101s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 python3-cairo arm64 1.27.0-2 [122 kB] 101s Get:43 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 101s Get:44 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 101s Get:45 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-reportlab all 4.3.1-1 [1137 kB] 101s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 xml-core all 0.19 [20.3 kB] 101s Get:47 http://ftpmaster.internal/ubuntu questing/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 101s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-biopython arm64 1.85+dfsg-2build1 [1711 kB] 101s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 python3-importlib-metadata all 8.6.1-1 [20.7 kB] 101s Get:50 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 101s Get:51 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 101s Get:52 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 101s Get:53 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 101s Get:54 http://ftpmaster.internal/ubuntu questing/universe arm64 tabix arm64 1.21+ds-1 [527 kB] 101s Fetched 27.8 MB in 2s (15.8 MB/s) 101s Selecting previously unselected package python3-numpy-dev:arm64. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85225 files and directories currently installed.) 101s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 101s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 101s Selecting previously unselected package libblas3:arm64. 101s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 101s Unpacking libblas3:arm64 (3.12.1-2) ... 101s Selecting previously unselected package libgfortran5:arm64. 101s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 101s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 101s Selecting previously unselected package liblapack3:arm64. 101s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 101s Unpacking liblapack3:arm64 (3.12.1-2) ... 101s Selecting previously unselected package python3-numpy. 101s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 101s Unpacking python3-numpy (1:2.2.3+ds-5) ... 102s Selecting previously unselected package sgml-base. 102s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 102s Unpacking sgml-base (1.31) ... 102s Selecting previously unselected package fonts-dejavu-mono. 102s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 102s Unpacking fonts-dejavu-mono (2.37-8) ... 102s Selecting previously unselected package fonts-dejavu-core. 102s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 102s Unpacking fonts-dejavu-core (2.37-8) ... 102s Selecting previously unselected package libfontenc1:arm64. 102s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 102s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 102s Selecting previously unselected package x11-common. 102s Preparing to unpack .../09-x11-common_1%3a7.7+23ubuntu4_all.deb ... 102s Unpacking x11-common (1:7.7+23ubuntu4) ... 102s Selecting previously unselected package xfonts-encodings. 102s Preparing to unpack .../10-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 102s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 102s Selecting previously unselected package xfonts-utils. 102s Preparing to unpack .../11-xfonts-utils_1%3a7.7+7_arm64.deb ... 102s Unpacking xfonts-utils (1:7.7+7) ... 102s Selecting previously unselected package fonts-urw-base35. 102s Preparing to unpack .../12-fonts-urw-base35_20200910-8_all.deb ... 102s Unpacking fonts-urw-base35 (20200910-8) ... 102s Selecting previously unselected package fontconfig-config. 102s Preparing to unpack .../13-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 102s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 102s Selecting previously unselected package libfontconfig1:arm64. 102s Preparing to unpack .../14-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 102s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 102s Selecting previously unselected package libpixman-1-0:arm64. 102s Preparing to unpack .../15-libpixman-1-0_0.44.0-3_arm64.deb ... 102s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 102s Selecting previously unselected package libxcb-render0:arm64. 102s Preparing to unpack .../16-libxcb-render0_1.17.0-2_arm64.deb ... 102s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 102s Selecting previously unselected package libxcb-shm0:arm64. 102s Preparing to unpack .../17-libxcb-shm0_1.17.0-2_arm64.deb ... 102s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 103s Selecting previously unselected package libxrender1:arm64. 103s Preparing to unpack .../18-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 103s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 103s Selecting previously unselected package libcairo2:arm64. 103s Preparing to unpack .../19-libcairo2_1.18.4-1_arm64.deb ... 103s Unpacking libcairo2:arm64 (1.18.4-1) ... 103s Selecting previously unselected package libdeflate0:arm64. 103s Preparing to unpack .../20-libdeflate0_1.23-1_arm64.deb ... 103s Unpacking libdeflate0:arm64 (1.23-1) ... 103s Selecting previously unselected package libgomp1:arm64. 103s Preparing to unpack .../21-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 103s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 103s Selecting previously unselected package libgraphite2-3:arm64. 103s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 103s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 103s Selecting previously unselected package libharfbuzz0b:arm64. 103s Preparing to unpack .../23-libharfbuzz0b_10.2.0-1_arm64.deb ... 103s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 103s Selecting previously unselected package libhtscodecs2:arm64. 103s Preparing to unpack .../24-libhtscodecs2_1.6.1-2_arm64.deb ... 103s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 103s Selecting previously unselected package libimagequant0:arm64. 103s Preparing to unpack .../25-libimagequant0_2.18.0-1build1_arm64.deb ... 103s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 103s Selecting previously unselected package libjpeg-turbo8:arm64. 103s Preparing to unpack .../26-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 103s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 103s Selecting previously unselected package libjpeg8:arm64. 103s Preparing to unpack .../27-libjpeg8_8c-2ubuntu11_arm64.deb ... 103s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 103s Selecting previously unselected package liblcms2-2:arm64. 103s Preparing to unpack .../28-liblcms2-2_2.16-2_arm64.deb ... 103s Unpacking liblcms2-2:arm64 (2.16-2) ... 103s Selecting previously unselected package liblerc4:arm64. 103s Preparing to unpack .../29-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 103s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 103s Selecting previously unselected package libraqm0:arm64. 103s Preparing to unpack .../30-libraqm0_0.10.2-1_arm64.deb ... 103s Unpacking libraqm0:arm64 (0.10.2-1) ... 103s Selecting previously unselected package libsharpyuv0:arm64. 103s Preparing to unpack .../31-libsharpyuv0_1.5.0-0.1_arm64.deb ... 103s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 103s Selecting previously unselected package libjbig0:arm64. 103s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 103s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 103s Selecting previously unselected package libwebp7:arm64. 103s Preparing to unpack .../33-libwebp7_1.5.0-0.1_arm64.deb ... 103s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 103s Selecting previously unselected package libtiff6:arm64. 103s Preparing to unpack .../34-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 103s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 103s Selecting previously unselected package libwebpdemux2:arm64. 103s Preparing to unpack .../35-libwebpdemux2_1.5.0-0.1_arm64.deb ... 103s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 103s Selecting previously unselected package libwebpmux3:arm64. 103s Preparing to unpack .../36-libwebpmux3_1.5.0-0.1_arm64.deb ... 103s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 103s Selecting previously unselected package python-pyfaidx-examples. 103s Preparing to unpack .../37-python-pyfaidx-examples_0.8.1.3-1_all.deb ... 103s Unpacking python-pyfaidx-examples (0.8.1.3-1) ... 103s Selecting previously unselected package python3-all. 103s Preparing to unpack .../38-python3-all_3.13.3-1_arm64.deb ... 103s Unpacking python3-all (3.13.3-1) ... 103s Selecting previously unselected package libopenjp2-7:arm64. 103s Preparing to unpack .../39-libopenjp2-7_2.5.3-2_arm64.deb ... 103s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 103s Selecting previously unselected package python3-pil:arm64. 103s Preparing to unpack .../40-python3-pil_11.1.0-5build1_arm64.deb ... 103s Unpacking python3-pil:arm64 (11.1.0-5build1) ... 103s Selecting previously unselected package python3-cairo. 103s Preparing to unpack .../41-python3-cairo_1.27.0-2_arm64.deb ... 103s Unpacking python3-cairo (1.27.0-2) ... 103s Selecting previously unselected package python3-freetype. 103s Preparing to unpack .../42-python3-freetype_2.5.1-1_all.deb ... 103s Unpacking python3-freetype (2.5.1-1) ... 103s Selecting previously unselected package python3-rlpycairo. 103s Preparing to unpack .../43-python3-rlpycairo_0.3.0-3_all.deb ... 103s Unpacking python3-rlpycairo (0.3.0-3) ... 103s Selecting previously unselected package python3-reportlab. 103s Preparing to unpack .../44-python3-reportlab_4.3.1-1_all.deb ... 103s Unpacking python3-reportlab (4.3.1-1) ... 103s Selecting previously unselected package xml-core. 103s Preparing to unpack .../45-xml-core_0.19_all.deb ... 103s Unpacking xml-core (0.19) ... 103s Selecting previously unselected package w3c-sgml-lib. 103s Preparing to unpack .../46-w3c-sgml-lib_1.3-3_all.deb ... 103s Unpacking w3c-sgml-lib (1.3-3) ... 104s Selecting previously unselected package python3-biopython. 104s Preparing to unpack .../47-python3-biopython_1.85+dfsg-2build1_arm64.deb ... 104s Unpacking python3-biopython (1.85+dfsg-2build1) ... 104s Selecting previously unselected package python3-importlib-metadata. 104s Preparing to unpack .../48-python3-importlib-metadata_8.6.1-1_all.deb ... 104s Unpacking python3-importlib-metadata (8.6.1-1) ... 104s Selecting previously unselected package python3-iniconfig. 104s Preparing to unpack .../49-python3-iniconfig_1.1.1-2_all.deb ... 104s Unpacking python3-iniconfig (1.1.1-2) ... 104s Selecting previously unselected package python3-pluggy. 104s Preparing to unpack .../50-python3-pluggy_1.5.0-1_all.deb ... 104s Unpacking python3-pluggy (1.5.0-1) ... 104s Selecting previously unselected package python3-pyfaidx. 104s Preparing to unpack .../51-python3-pyfaidx_0.8.1.3-1_all.deb ... 104s Unpacking python3-pyfaidx (0.8.1.3-1) ... 104s Selecting previously unselected package python3-pytest. 104s Preparing to unpack .../52-python3-pytest_8.3.5-2_all.deb ... 104s Unpacking python3-pytest (8.3.5-2) ... 104s Selecting previously unselected package tabix. 104s Preparing to unpack .../53-tabix_1.21+ds-1_arm64.deb ... 104s Unpacking tabix (1.21+ds-1) ... 104s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 104s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 104s Setting up liblcms2-2:arm64 (2.16-2) ... 104s Setting up python3-iniconfig (1.1.1-2) ... 104s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 104s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 104s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 104s Setting up python3-importlib-metadata (8.6.1-1) ... 104s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 104s Setting up python-pyfaidx-examples (0.8.1.3-1) ... 104s Setting up libxcb-render0:arm64 (1.17.0-2) ... 104s Setting up x11-common (1:7.7+23ubuntu4) ... 104s Setting up libdeflate0:arm64 (1.23-1) ... 104s Setting up python3-all (3.13.3-1) ... 104s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 104s Setting up libgomp1:arm64 (15-20250404-0ubuntu1) ... 104s Setting up python3-freetype (2.5.1-1) ... 105s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 105s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 105s Setting up libblas3:arm64 (3.12.1-2) ... 105s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 105s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 105s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 105s Setting up fonts-dejavu-mono (2.37-8) ... 105s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 105s Setting up fonts-dejavu-core (2.37-8) ... 105s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 105s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 105s Setting up python3-pluggy (1.5.0-1) ... 105s Setting up libwebp7:arm64 (1.5.0-0.1) ... 105s Setting up libopenjp2-7:arm64 (2.5.3-2) ... 105s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 105s Setting up sgml-base (1.31) ... 105s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 105s Setting up tabix (1.21+ds-1) ... 105s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 105s Setting up python3-pyfaidx (0.8.1.3-1) ... 105s Setting up liblapack3:arm64 (3.12.1-2) ... 105s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 105s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 105s Setting up python3-pytest (8.3.5-2) ... 105s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 105s Setting up xfonts-utils (1:7.7+7) ... 105s Setting up libraqm0:arm64 (0.10.2-1) ... 105s Setting up python3-numpy (1:2.2.3+ds-5) ... 107s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 107s Setting up xml-core (0.19) ... 107s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 107s Setting up fonts-urw-base35 (20200910-8) ... 107s Setting up libcairo2:arm64 (1.18.4-1) ... 107s Setting up python3-pil:arm64 (11.1.0-5build1) ... 108s Setting up python3-cairo (1.27.0-2) ... 108s Setting up python3-rlpycairo (0.3.0-3) ... 108s Setting up python3-reportlab (4.3.1-1) ... 108s Processing triggers for libc-bin (2.41-6ubuntu1) ... 108s Processing triggers for man-db (2.13.0-1) ... 109s Processing triggers for sgml-base (1.31) ... 109s Setting up w3c-sgml-lib (1.3-3) ... 133s Setting up python3-biopython (1.85+dfsg-2build1) ... 135s autopkgtest [14:07:16]: test run-unit-test: [----------------------- 135s Testing with python3.13 in /tmp/autopkgtest.Fqv5oN/build.6nV/src: 136s ============================= test session starts ============================== 136s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 136s cachedir: .pytest_cache 136s rootdir: /tmp/autopkgtest.Fqv5oN/build.6nV/src 136s configfile: pyproject.toml 136s plugins: typeguard-4.4.2 136s collecting ... collected 136 items 136s 136s tests/test_FastaRecord.py::test_sequence_uppercase PASSED [ 0%] 136s tests/test_FastaRecord.py::test_long_names PASSED [ 1%] 136s tests/test_FastaRecord.py::test_issue_62 PASSED [ 2%] 136s tests/test_FastaRecord.py::test_unpadded_length PASSED [ 2%] 136s tests/test_FastaRecord.py::test_numpy_array PASSED [ 3%] 136s tests/test_FastaRecord_iter.py::test_fetch_whole_fasta PASSED [ 4%] 136s tests/test_FastaRecord_iter.py::test_line_len PASSED [ 5%] 136s tests/test_FastaRecord_iter.py::test_reverse_iter PASSED [ 5%] 136s tests/test_FastaVariant.py::test_fetch_variant SKIPPED (pysam not in...) [ 6%] 136s tests/test_FastaVariant.py::test_fetch_hom_variant SKIPPED (pysam no...) [ 7%] 136s tests/test_FastaVariant.py::test_fetch_het_variant SKIPPED (pysam no...) [ 8%] 136s tests/test_FastaVariant.py::test_fetch_chr_not_in_vcf SKIPPED (pysam...) [ 8%] 136s tests/test_FastaVariant.py::test_all_pos SKIPPED (pysam not installed.) [ 9%] 136s tests/test_FastaVariant.py::test_all_diff SKIPPED (pysam not installed.) [ 10%] 136s tests/test_Fasta_bgzip.py::test_build_issue_126 XFAIL [ 11%] 136s tests/test_Fasta_bgzip.py::test_integer_slice PASSED [ 11%] 136s tests/test_Fasta_bgzip.py::test_integer_index PASSED [ 12%] 136s tests/test_Fasta_bgzip.py::test_fetch_whole_fasta PASSED [ 13%] 136s tests/test_Fasta_bgzip.py::test_line_len PASSED [ 13%] 136s tests/test_Fasta_bgzip.py::test_mutable_bgzf PASSED [ 14%] 136s tests/test_Fasta_bgzip.py::test_long_names XFAIL [ 15%] 136s tests/test_Fasta_bgzip.py::test_fetch_whole_entry PASSED [ 16%] 136s tests/test_Fasta_bgzip.py::test_fetch_middle PASSED [ 16%] 136s tests/test_Fasta_bgzip.py::test_fetch_end PASSED [ 17%] 136s tests/test_Fasta_bgzip.py::test_fetch_border PASSED [ 18%] 136s tests/test_Fasta_bgzip.py::test_rev PASSED [ 19%] 136s tests/test_Fasta_bgzip.py::test_fetch_past_bounds PASSED [ 19%] 136s tests/test_Fasta_bgzip.py::test_fetch_negative PASSED [ 20%] 136s tests/test_Fasta_bgzip.py::test_fetch_reversed_coordinates PASSED [ 21%] 136s tests/test_Fasta_bgzip.py::test_fetch_keyerror PASSED [ 22%] 136s tests/test_Fasta_bgzip.py::test_blank_string PASSED [ 22%] 136s tests/test_Fasta_bgzip.py::test_slice_from_beginning PASSED [ 23%] 136s tests/test_Fasta_bgzip.py::test_slice_from_end PASSED [ 24%] 136s tests/test_Fasta_bgzip.py::test_issue_74_start PASSED [ 25%] 136s tests/test_Fasta_bgzip.py::test_issue_74_consistency PASSED [ 25%] 136s tests/test_Fasta_bgzip.py::test_issue_74_end_faidx PASSED [ 26%] 136s tests/test_Fasta_bgzip.py::test_issue_74_end_fasta PASSED [ 27%] 136s tests/test_Fasta_bgzip.py::test_issue_79_fix PASSED [ 27%] 136s tests/test_Fasta_bgzip.py::test_issue_79_fix_negate PASSED [ 28%] 136s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false PASSED [ 29%] 136s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false_negate PASSED [ 30%] 136s tests/test_Fasta_bgzip.py::test_fetch_border_padded PASSED [ 30%] 136s tests/test_Fasta_integer_index.py::test_integer_slice PASSED [ 31%] 136s tests/test_Fasta_integer_index.py::test_integer_index PASSED [ 32%] 136s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads PASSED [ 33%] 136s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads_and_writes PASSED [ 33%] 137s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_writes PASSED [ 34%] 137s tests/test_Path.py::test_Faidx PASSED [ 35%] 137s tests/test_Path.py::test_Fasta PASSED [ 36%] 137s tests/test_bio_seqio.py::test_fetch_whole_entry PASSED [ 36%] 137s tests/test_bio_seqio.py::test_slice_whole_entry PASSED [ 37%] 137s tests/test_bio_seqio.py::test_revcomp_whole_entry PASSED [ 38%] 137s tests/test_faidx.py::test_short_line_lengths PASSED [ 38%] 137s tests/test_faidx.py::test_fetch_whole_file PASSED [ 39%] 137s tests/test_faidx.py::test_split_entry PASSED [ 40%] 137s tests/test_faidx.py::test_fetch_error PASSED [ 41%] 137s tests/test_faidx.py::test_key_warning PASSED [ 41%] 137s tests/test_faidx.py::test_auto_strand PASSED [ 42%] 137s tests/test_faidx.py::test_regexp PASSED [ 43%] 137s tests/test_faidx.py::test_not_regexp PASSED [ 44%] 137s tests/test_faidx.py::test_not_regexp_multi PASSED [ 44%] 137s tests/test_feature_bounds_check.py::test_index_zero_length PASSED [ 45%] 137s tests/test_feature_bounds_check.py::test_fetch_zero_length PASSED [ 46%] 137s tests/test_feature_bounds_check.py::test_as_raw_zero_length_subsequence PASSED [ 47%] 137s tests/test_feature_bounds_check.py::test_zero_length_subsequence PASSED [ 47%] 137s tests/test_feature_bounds_check.py::test_fetch_whole_entry PASSED [ 48%] 137s tests/test_feature_bounds_check.py::test_fetch_middle PASSED [ 49%] 137s tests/test_feature_bounds_check.py::test_fetch_end PASSED [ 50%] 137s tests/test_feature_bounds_check.py::test_fetch_border PASSED [ 50%] 137s tests/test_feature_bounds_check.py::test_rev PASSED [ 51%] 137s tests/test_feature_bounds_check.py::test_fetch_past_bounds PASSED [ 52%] 137s tests/test_feature_bounds_check.py::test_fetch_negative PASSED [ 52%] 137s tests/test_feature_bounds_check.py::test_fetch_reversed_coordinates PASSED [ 53%] 137s tests/test_feature_bounds_check.py::test_fetch_keyerror PASSED [ 54%] 137s tests/test_feature_bounds_check.py::test_blank_string PASSED [ 55%] 137s tests/test_feature_bounds_check.py::test_slice_from_beginning PASSED [ 55%] 137s tests/test_feature_bounds_check.py::test_slice_from_end PASSED [ 56%] 137s tests/test_feature_bounds_check.py::test_issue_74_start PASSED [ 57%] 137s tests/test_feature_bounds_check.py::test_issue_74_consistency PASSED [ 58%] 137s tests/test_feature_bounds_check.py::test_issue_74_end_faidx PASSED [ 58%] 137s tests/test_feature_bounds_check.py::test_issue_74_end_fasta PASSED [ 59%] 137s tests/test_feature_bounds_check.py::test_issue_79_fix PASSED [ 60%] 137s tests/test_feature_bounds_check.py::test_issue_79_fix_negate PASSED [ 61%] 137s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false PASSED [ 61%] 137s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false_negate PASSED [ 62%] 137s tests/test_feature_default_seq.py::test_fetch_border_padded PASSED [ 63%] 137s tests/test_feature_indexing.py::test_version_issue_206 PASSED [ 63%] 137s tests/test_feature_indexing.py::test_build PASSED [ 64%] 137s tests/test_feature_indexing.py::test_build_issue_141 PASSED [ 65%] 137s tests/test_feature_indexing.py::test_build_issue_111 PASSED [ 66%] 137s tests/test_feature_indexing.py::test_order PASSED [ 66%] 139s tests/test_feature_indexing.py::test_valgrind_short_lines PASSED [ 67%] 141s tests/test_feature_indexing.py::test_valgrind_long_lines PASSED [ 68%] 143s tests/test_feature_indexing.py::test_valgrind_blank_lines PASSED [ 69%] 145s tests/test_feature_indexing.py::test_reindex_on_modification PASSED [ 69%] 145s tests/test_feature_indexing.py::test_build_issue_83 PASSED [ 70%] 145s tests/test_feature_indexing.py::test_build_issue_96_fail_build_faidx PASSED [ 71%] 145s tests/test_feature_indexing.py::test_build_issue_96_fail_read_malformed_index_duplicate_key PASSED [ 72%] 145s tests/test_feature_indexing.py::test_read_back_index PASSED [ 72%] 145s tests/test_feature_indexing.py::test_issue_134_no_build_index PASSED [ 73%] 145s tests/test_feature_indexing.py::test_issue_144_no_defline PASSED [ 74%] 145s tests/test_feature_key_function.py::test_keys PASSED [ 75%] 145s tests/test_feature_key_function.py::test_key_function_by_dictionary_get_key PASSED [ 75%] 145s tests/test_feature_key_function.py::test_key_function_by_fetch PASSED [ 76%] 145s tests/test_feature_key_function.py::test_duplicated_keys PASSED [ 77%] 145s tests/test_feature_key_function.py::test_duplicated_keys_shortest PASSED [ 77%] 145s tests/test_feature_key_function.py::test_duplicated_keys_longest PASSED [ 78%] 145s tests/test_feature_read_ahead_buffer.py::test_buffer_false PASSED [ 79%] 145s tests/test_feature_read_ahead_buffer.py::test_buffer_true PASSED [ 80%] 145s tests/test_feature_read_ahead_buffer.py::test_buffer_exceed PASSED [ 80%] 145s tests/test_feature_read_ahead_buffer.py::test_bounds_error PASSED [ 81%] 145s tests/test_feature_read_ahead_buffer.py::test_buffer_value PASSED [ 82%] 145s tests/test_feature_sequence_as_raw.py::test_as_raw_false PASSED [ 83%] 145s tests/test_feature_sequence_as_raw.py::test_as_raw_true PASSED [ 83%] 145s tests/test_feature_sequence_as_raw.py::test_as_raw_false_error PASSED [ 84%] 145s tests/test_feature_sequence_as_raw.py::test_as_raw_true_error PASSED [ 85%] 145s tests/test_feature_sequence_as_raw.py::test_as_raw_type_when_blen_lt_0 PASSED [ 86%] 145s tests/test_feature_spliced_seq.py::test_split_seq PASSED [ 86%] 145s tests/test_feature_spliced_seq.py::test_get_seq_rc PASSED [ 87%] 145s tests/test_feature_split_char.py::test_keys PASSED [ 88%] 145s tests/test_feature_split_char.py::test_key_function_by_dictionary_get_key PASSED [ 88%] 145s tests/test_feature_split_char.py::test_key_function_by_fetch PASSED [ 89%] 145s tests/test_feature_split_char.py::test_stop PASSED [ 90%] 145s tests/test_fsspec.py::test_fsspec_fetch_whole_file SKIPPED (uncondit...) [ 91%] 145s tests/test_fsspec.py::test_fsspec_default_index SKIPPED (uncondition...) [ 91%] 145s tests/test_fsspec.py::test_fsspec_local_index SKIPPED (unconditional...) [ 92%] 145s tests/test_fsspec.py::test_fsspec_remote_index SKIPPED (unconditiona...) [ 93%] 145s tests/test_sequence_class.py::test_negate PASSED [ 94%] 145s tests/test_sequence_class.py::test_negate_metadata PASSED [ 94%] 145s tests/test_sequence_class.py::test_seq_invalid PASSED [ 95%] 145s tests/test_sequence_class.py::test_integer_index PASSED [ 96%] 145s tests/test_sequence_class.py::test_slice_index PASSED [ 97%] 145s tests/test_sequence_class.py::test_comp_invalid PASSED [ 97%] 145s tests/test_sequence_class.py::test_check_coordinates PASSED [ 98%] 145s tests/test_sequence_class.py::test_comp_valid PASSED [ 99%] 145s tests/test_sequence_class.py::test_comp_empty PASSED [100%] 145s 145s ================== 124 passed, 10 skipped, 2 xfailed in 9.39s ================== 145s autopkgtest [14:07:26]: test run-unit-test: -----------------------] 146s autopkgtest [14:07:27]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 146s run-unit-test PASS 146s autopkgtest [14:07:27]: test autodep8-python3: preparing testbed 211s autopkgtest [14:08:32]: testbed dpkg architecture: arm64 211s autopkgtest [14:08:32]: testbed apt version: 3.0.0 211s autopkgtest [14:08:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 212s autopkgtest [14:08:33]: testbed release detected to be: questing 212s autopkgtest [14:08:33]: updating testbed package index (apt update) 212s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 212s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 212s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 213s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 213s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [171 kB] 213s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 213s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2029 kB] 213s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [218 kB] 213s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1476 kB] 213s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 213s Fetched 4063 kB in 1s (6832 kB/s) 214s Reading package lists... 214s autopkgtest [14:08:35]: upgrading testbed (apt dist-upgrade and autopurge) 214s Reading package lists... 215s Building dependency tree... 215s Reading state information... 215s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 215s Starting 2 pkgProblemResolver with broken count: 0 215s Done 216s Entering ResolveByKeep 216s 216s Calculating upgrade... 216s The following packages will be upgraded: 216s htop libnpth0t64 libperl5.40 mokutil mtd-utils nano perl perl-base 216s perl-modules-5.40 usb.ids 216s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 216s Need to get 11.2 MB of archives. 216s After this operation, 727 kB of additional disk space will be used. 216s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libperl5.40 arm64 5.40.1-3 [4780 kB] 217s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl arm64 5.40.1-3 [262 kB] 217s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-base arm64 5.40.1-3 [1786 kB] 217s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 217s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 libnpth0t64 arm64 1.8-3 [8818 B] 217s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 217s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 usb.ids all 2025.04.01-1 [223 kB] 217s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 217s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 mokutil arm64 0.7.2-1 [28.4 kB] 217s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 217s Fetched 11.2 MB in 0s (35.1 MB/s) 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 217s Preparing to unpack .../libperl5.40_5.40.1-3_arm64.deb ... 217s Unpacking libperl5.40:arm64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 218s Preparing to unpack .../perl_5.40.1-3_arm64.deb ... 218s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 218s Preparing to unpack .../perl-base_5.40.1-3_arm64.deb ... 218s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 218s Setting up perl-base (5.40.1-3) ... 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 218s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 218s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 218s Preparing to unpack .../libnpth0t64_1.8-3_arm64.deb ... 218s Unpacking libnpth0t64:arm64 (1.8-3) over (1.8-2) ... 218s Setting up libnpth0t64:arm64 (1.8-3) ... 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 218s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 218s Unpacking nano (8.4-1) over (8.3-1) ... 218s Preparing to unpack .../usb.ids_2025.04.01-1_all.deb ... 218s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 218s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 218s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 218s Preparing to unpack .../mokutil_0.7.2-1_arm64.deb ... 218s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ... 218s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 218s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 218s Setting up mokutil (0.7.2-1) ... 218s Setting up htop (3.4.1-4) ... 218s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 218s Setting up usb.ids (2025.04.01-1) ... 218s Setting up nano (8.4-1) ... 218s Installing new version of config file /etc/nanorc ... 218s Setting up perl-modules-5.40 (5.40.1-3) ... 218s Setting up libperl5.40:arm64 (5.40.1-3) ... 218s Setting up perl (5.40.1-3) ... 218s Processing triggers for libc-bin (2.41-6ubuntu1) ... 219s Processing triggers for man-db (2.13.0-1) ... 220s Processing triggers for install-info (7.1.1-1) ... 220s Reading package lists... 220s Building dependency tree... 220s Reading state information... 221s Starting pkgProblemResolver with broken count: 0 221s Starting 2 pkgProblemResolver with broken count: 0 221s Done 221s Solving dependencies... 221s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 224s Reading package lists... 224s Building dependency tree... 224s Reading state information... 224s Starting pkgProblemResolver with broken count: 0 224s Starting 2 pkgProblemResolver with broken count: 0 224s Done 225s The following NEW packages will be installed: 225s python3-all python3-importlib-metadata python3-pyfaidx 225s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 225s Need to get 51.3 kB of archives. 225s After this operation, 223 kB of additional disk space will be used. 225s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 python3-all arm64 3.13.3-1 [880 B] 225s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 python3-importlib-metadata all 8.6.1-1 [20.7 kB] 225s Get:3 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 225s Fetched 51.3 kB in 0s (3667 kB/s) 225s Selecting previously unselected package python3-all. 226s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85225 files and directories currently installed.) 226s Preparing to unpack .../python3-all_3.13.3-1_arm64.deb ... 226s Unpacking python3-all (3.13.3-1) ... 226s Selecting previously unselected package python3-importlib-metadata. 226s Preparing to unpack .../python3-importlib-metadata_8.6.1-1_all.deb ... 226s Unpacking python3-importlib-metadata (8.6.1-1) ... 226s Selecting previously unselected package python3-pyfaidx. 226s Preparing to unpack .../python3-pyfaidx_0.8.1.3-1_all.deb ... 226s Unpacking python3-pyfaidx (0.8.1.3-1) ... 226s Setting up python3-importlib-metadata (8.6.1-1) ... 226s Setting up python3-all (3.13.3-1) ... 226s Setting up python3-pyfaidx (0.8.1.3-1) ... 226s Processing triggers for man-db (2.13.0-1) ... 228s autopkgtest [14:08:49]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyfaidx; print(pyfaidx)" ; done 228s autopkgtest [14:08:49]: test autodep8-python3: [----------------------- 228s Testing with python3.13: 228s 228s autopkgtest [14:08:49]: test autodep8-python3: -----------------------] 228s autodep8-python3 PASS (superficial) 228s autopkgtest [14:08:49]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 229s autopkgtest [14:08:50]: @@@@@@@@@@@@@@@@@@@@ summary 229s run-unit-test PASS 229s autodep8-python3 PASS (superficial) 244s nova [W] Using flock in prodstack7-arm64 244s Creating nova instance adt-questing-arm64-python-pyfaidx-20250502-140501-juju-7f2275-prod-proposed-migration-environment-21-e2cc5978-b384-44d9-ae94-392b30c78539 from image adt/ubuntu-questing-arm64-server-20250501.img (UUID 137c3127-57d2-4bf2-a106-d904ad6e43f4)... 244s nova [W] Timed out waiting for e22f1122-edf7-4131-8c74-4da183566bf3 to get deleted. 244s nova [W] Using flock in prodstack7-arm64 244s Creating nova instance adt-questing-arm64-python-pyfaidx-20250502-140501-juju-7f2275-prod-proposed-migration-environment-21-e2cc5978-b384-44d9-ae94-392b30c78539 from image adt/ubuntu-questing-arm64-server-20250501.img (UUID 137c3127-57d2-4bf2-a106-d904ad6e43f4)... 244s nova [W] Timed out waiting for 63ed46fc-ffcb-4f5e-bafc-285b9f3c31c9 to get deleted.