0s autopkgtest [10:25:18]: starting date and time: 2025-05-02 10:25:18+0000 0s autopkgtest [10:25:18]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [10:25:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k4hv320g/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:matplotlib --apt-upgrade pymatgen --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=matplotlib/3.10.1+dfsg1-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu4-ram16-disk100-arm64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-arm64-4.secgroup --name adt-questing-arm64-pymatgen-20250502-102518-juju-7f2275-prod-proposed-migration-environment-2-a3edd196-493e-4f01-b0ae-ade5dd260fb3 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-arm64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 65s autopkgtest [10:26:23]: testbed dpkg architecture: arm64 65s autopkgtest [10:26:23]: testbed apt version: 3.0.0 65s autopkgtest [10:26:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 66s autopkgtest [10:26:24]: testbed release detected to be: None 66s autopkgtest [10:26:24]: updating testbed package index (apt update) 66s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 67s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 67s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 67s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 67s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 67s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB] 67s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB] 67s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [219 kB] 67s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1509 kB] 67s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 67s Fetched 4149 kB in 1s (6899 kB/s) 68s Reading package lists... 68s autopkgtest [10:26:26]: upgrading testbed (apt dist-upgrade and autopurge) 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 70s Starting 2 pkgProblemResolver with broken count: 0 70s Done 70s Entering ResolveByKeep 71s 71s Calculating upgrade... 71s The following packages will be upgraded: 71s htop libperl5.40 mtd-utils nano perl perl-base perl-modules-5.40 71s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 11.0 MB of archives. 71s After this operation, 727 kB of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libperl5.40 arm64 5.40.1-3 [4780 kB] 71s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl arm64 5.40.1-3 [262 kB] 71s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-base arm64 5.40.1-3 [1786 kB] 71s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 72s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 72s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 72s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 72s Fetched 11.0 MB in 0s (31.9 MB/s) 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 72s Preparing to unpack .../libperl5.40_5.40.1-3_arm64.deb ... 72s Unpacking libperl5.40:arm64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 72s Preparing to unpack .../perl_5.40.1-3_arm64.deb ... 72s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 72s Preparing to unpack .../perl-base_5.40.1-3_arm64.deb ... 72s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 73s Setting up perl-base (5.40.1-3) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 73s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 73s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 73s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 73s Unpacking nano (8.4-1) over (8.3-1) ... 73s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 73s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 73s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 73s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 73s Setting up htop (3.4.1-4) ... 73s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 73s Setting up nano (8.4-1) ... 73s Installing new version of config file /etc/nanorc ... 73s Setting up perl-modules-5.40 (5.40.1-3) ... 73s Setting up libperl5.40:arm64 (5.40.1-3) ... 73s Setting up perl (5.40.1-3) ... 73s Processing triggers for libc-bin (2.41-6ubuntu1) ... 73s Processing triggers for man-db (2.13.0-1) ... 74s Processing triggers for install-info (7.1.1-1) ... 74s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Starting pkgProblemResolver with broken count: 0 75s Starting 2 pkgProblemResolver with broken count: 0 75s Done 75s Solving dependencies... 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 78s autopkgtest [10:26:36]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 78s autopkgtest [10:26:36]: @@@@@@@@@@@@@@@@@@@@ apt-source pymatgen 80s Get:1 http://ftpmaster.internal/ubuntu questing/universe pymatgen 2025.2.18+dfsg1-4 (dsc) [3207 B] 80s Get:2 http://ftpmaster.internal/ubuntu questing/universe pymatgen 2025.2.18+dfsg1-4 (tar) [9896 kB] 80s Get:3 http://ftpmaster.internal/ubuntu questing/universe pymatgen 2025.2.18+dfsg1-4 (diff) [17.1 kB] 80s gpgv: Signature made Thu Feb 27 10:55:17 2025 UTC 80s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 80s gpgv: issuer "dparsons@debian.org" 80s gpgv: Can't check signature: No public key 80s dpkg-source: warning: cannot verify inline signature for ./pymatgen_2025.2.18+dfsg1-4.dsc: no acceptable signature found 81s autopkgtest [10:26:39]: testing package pymatgen version 2025.2.18+dfsg1-4 81s autopkgtest [10:26:39]: build not needed 85s autopkgtest [10:26:43]: test test-pymatgen: preparing testbed 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s Starting pkgProblemResolver with broken count: 0 85s Starting 2 pkgProblemResolver with broken count: 0 85s Done 86s The following NEW packages will be installed: 86s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 86s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit 86s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 86s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 86s fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx 86s fonts-mathjax g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 86s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext 86s intltool-debian libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl 86s libasan8 libblas3 libboost-iostreams1.83.0 libcairo2 libcc1-0 86s libdebhelper-perl libdeflate0 libdouble-conversion3 libegl-mesa0 libegl1 86s libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 86s libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev 86s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 86s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 86s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins 86s libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 libinchi1.07 86s libinput-bin libinput10 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 86s libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc 86s libjs-underscore libjson-perl libjsoncpp26 liblapack3 liblbfgsb0 liblcms2-2 86s liblerc4 libllvm17t64 liblsan0 liblzf1 libmaeparser1 libmd4c0 libmpc3 86s libmtdev1t64 libmunge2 libnetcdf22 libogg0 libopenbabel7 libopengl0 86s libopenjp2-7 libopenmpi40 libpciaccess0 libpcre2-16-0 libpixman-1-0 86s libpmix2t64 libproj25 libpython3-all-dev libpython3-dev libpython3.13-dev 86s libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 86s libqt5widgets5t64 libraqm0 librdmacm1t64 libsharpyuv0 libsm6 86s libstdc++-14-dev libsymspg2 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 86s libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libtool libtsan2 86s libubsan1 libucx0 libvtk9.3 libvtk9.3-qt libvulkan1 libwacom-common 86s libwacom9 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 86s libwebpmux3 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 86s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 86s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 86s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 86s libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1 86s libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin ocl-icd-libopencl1 86s openmpi-bin openmpi-common packmol po-debconf proj-data 86s pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data 86s python-pymatgen-doc python3-alabaster python3-all python3-all-dev 86s python3-annotated-types python3-ase python3-brotli python3-bs4 python3-bson 86s python3-build python3-cftime python3-contourpy python3-cycler 86s python3-decorator python3-defusedxml python3-dev python3-dnspython 86s python3-docutils python3-email-validator python3-fastjsonschema 86s python3-fonttools python3-frozendict python3-fs python3-h5py 86s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 86s python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec 86s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpi4py 86s python3-mpmath python3-nbformat python3-netcdf4 python3-networkx 86s python3-numpy python3-numpy-dev python3-openbabel python3-palettable 86s python3-pandas python3-pandas-lib python3-phonopy python3-pil 86s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 86s python3-pybtex python3-pydantic python3-pydantic-core python3-pymatgen 86s python3-pyproject-hooks python3-pytest python3-pytz python3-roman 86s python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy 86s python3-snowballstemmer python3-soupsieve python3-spglib python3-sphinx 86s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 86s python3-tabulate python3-tenacity python3-tk python3-toml python3-tqdm 86s python3-traitlets python3-tz python3-ufolib2 python3-uncertainties 86s python3-unicodedata2 python3-vtk9 python3-wheel python3.13-dev python3.13-tk 86s sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data 86s x11-common xml-core zlib1g-dev 86s 0 upgraded, 288 newly installed, 0 to remove and 0 not upgraded. 86s Need to get 531 MB of archives. 86s After this operation, 2036 MB of additional disk space will be used. 86s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-lato all 2.015-1 [2781 kB] 86s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 86s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 86s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 87s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 87s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 87s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 sgml-base all 1.31 [11.4 kB] 87s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 m4 arm64 1.4.19-7 [244 kB] 87s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 autoconf all 2.72-3ubuntu1 [383 kB] 87s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 autotools-dev all 20220109.1 [44.9 kB] 87s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 automake all 1:1.17-3ubuntu1 [572 kB] 87s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 autopoint all 0.23.1-1 [619 kB] 87s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 87s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 87s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 87s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 87s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 87s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 87s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 87s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 87s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 87s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 87s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 87s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 87s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB] 87s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 87s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [10.6 MB] 88s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14 arm64 14.2.0-19ubuntu2 [1026 B] 88s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 88s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 88s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 libcc1-0 arm64 15-20250404-0ubuntu1 [49.1 kB] 88s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 88s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libitm1 arm64 15-20250404-0ubuntu1 [27.8 kB] 88s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libasan8 arm64 15-20250404-0ubuntu1 [2922 kB] 88s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 liblsan0 arm64 15-20250404-0ubuntu1 [1318 kB] 88s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libtsan2 arm64 15-20250404-0ubuntu1 [2692 kB] 88s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libubsan1 arm64 15-20250404-0ubuntu1 [1177 kB] 88s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libhwasan0 arm64 15-20250404-0ubuntu1 [1640 kB] 88s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libgcc-14-dev arm64 14.2.0-19ubuntu2 [2593 kB] 88s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [20.9 MB] 88s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14 arm64 14.2.0-19ubuntu2 [529 kB] 88s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 88s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 88s Get:44 http://ftpmaster.internal/ubuntu questing/main arm64 libstdc++-14-dev arm64 14.2.0-19ubuntu2 [2501 kB] 88s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [12.1 MB] 89s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 g++-14 arm64 14.2.0-19ubuntu2 [23.0 kB] 89s Get:47 http://ftpmaster.internal/ubuntu questing/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 89s Get:48 http://ftpmaster.internal/ubuntu questing/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 89s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 build-essential arm64 12.12ubuntu1 [5082 B] 89s Get:50 http://ftpmaster.internal/ubuntu questing/universe arm64 cython3 arm64 3.0.11+dfsg-2ubuntu2 [2436 kB] 89s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 89s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libtool all 2.5.4-4 [168 kB] 89s Get:53 http://ftpmaster.internal/ubuntu questing/main arm64 dh-autoreconf all 20 [16.1 kB] 89s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 89s Get:55 http://ftpmaster.internal/ubuntu questing/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 89s Get:56 http://ftpmaster.internal/ubuntu questing/main arm64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 89s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 debugedit arm64 1:5.1-2 [46.1 kB] 89s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 dwz arm64 0.15-1build6 [113 kB] 89s Get:59 http://ftpmaster.internal/ubuntu questing/main arm64 gettext arm64 0.23.1-1 [998 kB] 89s Get:60 http://ftpmaster.internal/ubuntu questing/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 89s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 89s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 debhelper all 13.24.1ubuntu2 [895 kB] 89s Get:63 http://ftpmaster.internal/ubuntu questing/universe arm64 dh-python all 6.20250308 [118 kB] 89s Get:64 http://ftpmaster.internal/ubuntu questing/main arm64 xml-core all 0.19 [20.3 kB] 89s Get:65 http://ftpmaster.internal/ubuntu questing/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 89s Get:66 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig arm64 2.15.0-2.2ubuntu1 [191 kB] 89s Get:67 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 89s Get:68 http://ftpmaster.internal/ubuntu questing/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 89s Get:69 http://ftpmaster.internal/ubuntu questing/universe arm64 fonts-lyx all 2.4.3-1 [171 kB] 89s Get:70 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 89s Get:71 http://ftpmaster.internal/ubuntu questing/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 89s Get:72 http://ftpmaster.internal/ubuntu questing/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 89s Get:73 http://ftpmaster.internal/ubuntu questing/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 89s Get:74 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 89s Get:75 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 89s Get:76 http://ftpmaster.internal/ubuntu questing/universe arm64 libamdhip64-5 arm64 5.7.1-5build1 [9707 kB] 90s Get:77 http://ftpmaster.internal/ubuntu questing/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-4.2ubuntu1 [259 kB] 90s Get:78 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 90s Get:79 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 90s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 90s Get:81 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 90s Get:82 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 90s Get:83 http://ftpmaster.internal/ubuntu questing/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 90s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 90s Get:85 http://ftpmaster.internal/ubuntu questing/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 90s Get:86 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 90s Get:87 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 90s Get:88 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 90s Get:89 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 90s Get:90 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 90s Get:91 http://ftpmaster.internal/ubuntu questing/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 90s Get:92 http://ftpmaster.internal/ubuntu questing/main arm64 mesa-libgallium arm64 25.0.3-1ubuntu2 [9455 kB] 90s Get:93 http://ftpmaster.internal/ubuntu questing/main arm64 libgbm1 arm64 25.0.3-1ubuntu2 [33.7 kB] 90s Get:94 http://ftpmaster.internal/ubuntu questing/main arm64 libwayland-client0 arm64 1.23.1-3 [27.0 kB] 90s Get:95 http://ftpmaster.internal/ubuntu questing/main arm64 libegl-mesa0 arm64 25.0.3-1ubuntu2 [122 kB] 90s Get:96 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 90s Get:97 http://ftpmaster.internal/ubuntu questing/main arm64 libexpat1-dev arm64 2.7.1-1 [128 kB] 90s Get:98 http://ftpmaster.internal/ubuntu questing/main arm64 librdmacm1t64 arm64 56.0-4ubuntu1 [71.4 kB] 90s Get:99 http://ftpmaster.internal/ubuntu questing/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 90s Get:100 http://ftpmaster.internal/ubuntu questing/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 90s Get:101 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1-mesa-dri arm64 25.0.3-1ubuntu2 [35.4 kB] 90s Get:102 http://ftpmaster.internal/ubuntu questing/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 90s Get:103 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 90s Get:104 http://ftpmaster.internal/ubuntu questing/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 90s Get:105 http://ftpmaster.internal/ubuntu questing/main arm64 libglx-mesa0 arm64 25.0.3-1ubuntu2 [151 kB] 90s Get:106 http://ftpmaster.internal/ubuntu questing/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 90s Get:107 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 90s Get:108 http://ftpmaster.internal/ubuntu questing/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 90s Get:109 http://ftpmaster.internal/ubuntu questing/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 90s Get:110 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 90s Get:111 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 90s Get:112 http://ftpmaster.internal/ubuntu questing/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 90s Get:113 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 90s Get:114 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 90s Get:115 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 90s Get:116 http://ftpmaster.internal/ubuntu questing/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 90s Get:117 http://ftpmaster.internal/ubuntu questing/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 90s Get:118 http://ftpmaster.internal/ubuntu questing/universe arm64 libinchi1.07 arm64 1.07.3+dfsg-1 [573 kB] 90s Get:119 http://ftpmaster.internal/ubuntu questing/main arm64 libwacom-common all 2.14.0-1 [103 kB] 90s Get:120 http://ftpmaster.internal/ubuntu questing/main arm64 libwacom9 arm64 2.14.0-1 [26.7 kB] 90s Get:121 http://ftpmaster.internal/ubuntu questing/main arm64 libinput-bin arm64 1.27.1-1 [23.5 kB] 90s Get:122 http://ftpmaster.internal/ubuntu questing/main arm64 libmtdev1t64 arm64 1.1.7-1 [14.6 kB] 90s Get:123 http://ftpmaster.internal/ubuntu questing/main arm64 libinput10 arm64 1.27.1-1 [136 kB] 90s Get:124 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 90s Get:125 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 90s Get:126 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 90s Get:127 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 90s Get:128 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 90s Get:129 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 90s Get:130 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 90s Get:131 http://ftpmaster.internal/ubuntu questing/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 90s Get:132 http://ftpmaster.internal/ubuntu questing/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 90s Get:133 http://ftpmaster.internal/ubuntu questing/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 90s Get:134 http://ftpmaster.internal/ubuntu questing/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 90s Get:135 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 90s Get:136 http://ftpmaster.internal/ubuntu questing/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 90s Get:137 http://ftpmaster.internal/ubuntu questing/universe arm64 libmaeparser1 arm64 1.3.1-1build1 [84.5 kB] 90s Get:138 http://ftpmaster.internal/ubuntu questing/universe arm64 libmd4c0 arm64 0.5.2-2 [42.4 kB] 90s Get:139 http://ftpmaster.internal/ubuntu questing/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 90s Get:140 http://ftpmaster.internal/ubuntu questing/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 90s Get:141 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenbabel7 arm64 3.1.1+dfsg-11ubuntu3 [3183 kB] 90s Get:142 http://ftpmaster.internal/ubuntu questing/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 90s Get:143 http://ftpmaster.internal/ubuntu questing/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 90s Get:144 http://ftpmaster.internal/ubuntu questing/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 90s Get:145 http://ftpmaster.internal/ubuntu questing/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 90s Get:146 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 90s Get:147 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 90s Get:148 http://ftpmaster.internal/ubuntu questing/main arm64 libibumad3 arm64 56.0-4ubuntu1 [31.3 kB] 90s Get:149 http://ftpmaster.internal/ubuntu questing/main arm64 libibmad5 arm64 56.0-4ubuntu1 [44.1 kB] 90s Get:150 http://ftpmaster.internal/ubuntu questing/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 90s Get:151 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 90s Get:152 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 90s Get:153 http://ftpmaster.internal/ubuntu questing/universe arm64 proj-data all 9.5.1-1 [7924 kB] 91s Get:154 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 91s Get:155 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 91s Get:156 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 91s Get:157 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 91s Get:158 http://ftpmaster.internal/ubuntu questing/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 91s Get:159 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 91s Get:160 http://ftpmaster.internal/ubuntu questing/main arm64 libpython3.13-dev arm64 3.13.3-1 [5405 kB] 91s Get:161 http://ftpmaster.internal/ubuntu questing/main arm64 libpython3-dev arm64 3.13.3-1 [10.8 kB] 91s Get:162 http://ftpmaster.internal/ubuntu questing/main arm64 libpython3-all-dev arm64 3.13.3-1 [906 B] 91s Get:163 http://ftpmaster.internal/ubuntu questing/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 91s Get:164 http://ftpmaster.internal/ubuntu questing/universe arm64 libqt5core5t64 arm64 5.15.15+dfsg-4ubuntu1 [1999 kB] 91s Get:165 http://ftpmaster.internal/ubuntu questing/universe arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-4ubuntu1 [222 kB] 91s Get:166 http://ftpmaster.internal/ubuntu questing/main arm64 libegl1 arm64 1.7.0-1build1 [29.5 kB] 91s Get:167 http://ftpmaster.internal/ubuntu questing/universe arm64 libqt5network5t64 arm64 5.15.15+dfsg-4ubuntu1 [735 kB] 91s Get:168 http://ftpmaster.internal/ubuntu questing/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 91s Get:169 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-icccm4 arm64 0.4.2-1 [10.9 kB] 91s Get:170 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-util1 arm64 0.4.1-1 [10.9 kB] 91s Get:171 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB] 91s Get:172 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-keysyms1 arm64 0.4.1-1 [8802 B] 91s Get:173 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render-util0 arm64 0.3.10-1 [10.5 kB] 91s Get:174 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shape0 arm64 1.17.0-2 [6246 B] 91s Get:175 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [5590 B] 91s Get:176 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xinput0 arm64 1.17.0-2 [34.2 kB] 91s Get:177 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xkb1 arm64 1.17.0-2 [32.5 kB] 91s Get:178 http://ftpmaster.internal/ubuntu questing/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2 [13.8 kB] 91s Get:179 http://ftpmaster.internal/ubuntu questing/universe arm64 libqt5gui5t64 arm64 5.15.15+dfsg-4ubuntu1 [3680 kB] 91s Get:180 http://ftpmaster.internal/ubuntu questing/universe arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-4ubuntu1 [2568 kB] 91s Get:181 http://ftpmaster.internal/ubuntu questing/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 91s Get:182 http://ftpmaster.internal/ubuntu questing/universe arm64 libsymspg2 arm64 2.5.0-2build1 [210 kB] 91s Get:183 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 91s Get:184 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 91s Get:185 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 91s Get:186 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 91s Get:187 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 91s Get:188 http://ftpmaster.internal/ubuntu questing/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 91s Get:189 http://ftpmaster.internal/ubuntu questing/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu1 [24.0 MB] 92s Get:190 http://ftpmaster.internal/ubuntu questing/universe arm64 libvtk9.3-qt arm64 9.3.0+dfsg1-4ubuntu1 [183 kB] 92s Get:191 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 92s Get:192 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 92s Get:193 http://ftpmaster.internal/ubuntu questing/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu4 [168 kB] 92s Get:194 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 92s Get:195 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 92s Get:196 http://ftpmaster.internal/ubuntu questing/universe arm64 packmol arm64 1:20.15.3-1 [118 kB] 92s Get:197 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 92s Get:198 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-toml all 0.10.2-1 [16.5 kB] 92s Get:199 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-wheel all 0.45.1-1 [57.7 kB] 92s Get:200 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-build all 1.2.2-1 [31.0 kB] 92s Get:201 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 92s Get:202 http://ftpmaster.internal/ubuntu questing/universe arm64 pybuild-plugin-pyproject all 6.20250308 [1726 B] 92s Get:203 http://ftpmaster.internal/ubuntu questing/universe arm64 pymatgen-test-files all 2025.2.18-1 [214 MB] 99s Get:204 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 python-matplotlib-data all 3.10.1+dfsg1-3 [2936 kB] 99s Get:205 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 99s Get:206 http://ftpmaster.internal/ubuntu questing/main arm64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 99s Get:207 http://ftpmaster.internal/ubuntu questing/universe arm64 python-pymatgen-doc all 2025.2.18+dfsg1-4 [1186 kB] 99s Get:208 http://ftpmaster.internal/ubuntu questing/main arm64 python3-all arm64 3.13.3-1 [880 B] 99s Get:209 http://ftpmaster.internal/ubuntu questing/main arm64 python3.13-dev arm64 3.13.3-1 [508 kB] 99s Get:210 http://ftpmaster.internal/ubuntu questing/main arm64 python3-dev arm64 3.13.3-1 [26.7 kB] 99s Get:211 http://ftpmaster.internal/ubuntu questing/main arm64 python3-all-dev arm64 3.13.3-1 [904 B] 99s Get:212 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-annotated-types all 0.7.0-1 [19.4 kB] 99s Get:213 http://ftpmaster.internal/ubuntu questing/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 99s Get:214 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB] 100s Get:215 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-spglib arm64 2.5.0-2build1 [31.1 kB] 100s Get:216 http://ftpmaster.internal/ubuntu questing/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 100s Get:217 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 100s Get:218 http://ftpmaster.internal/ubuntu questing/main arm64 python3.13-tk arm64 3.13.3-1 [106 kB] 100s Get:219 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tk arm64 3.13.3-1 [9856 B] 100s Get:220 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pil.imagetk arm64 11.1.0-5build1 [9892 B] 100s Get:221 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-contourpy arm64 1.3.1-1build1 [182 kB] 100s Get:222 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 100s Get:223 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-brotli arm64 1.1.0-2build4 [342 kB] 100s Get:224 http://ftpmaster.internal/ubuntu questing/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 100s Get:225 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 100s Get:226 http://ftpmaster.internal/ubuntu questing/main arm64 python3-lxml arm64 5.3.2-1 [1258 kB] 100s Get:227 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1build1 [27.1 kB] 100s Get:228 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 100s Get:229 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 100s Get:230 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 100s Get:231 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build3 [360 kB] 100s Get:232 http://ftpmaster.internal/ubuntu questing/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 100s Get:233 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-fonttools arm64 4.55.3-2build1 [1466 kB] 100s Get:234 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-kiwisolver arm64 1.4.7-3build1 [50.7 kB] 100s Get:235 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 python3-matplotlib arm64 3.10.1+dfsg1-3 [18.0 MB] 101s Get:236 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-ase all 3.24.0-1 [1787 kB] 101s Get:237 http://ftpmaster.internal/ubuntu questing/main arm64 python3-soupsieve all 2.6-1 [33.0 kB] 101s Get:238 http://ftpmaster.internal/ubuntu questing/main arm64 python3-bs4 all 4.13.3-2 [136 kB] 101s Get:239 http://ftpmaster.internal/ubuntu questing/main arm64 python3-bson all 4.10.1-5build1 [42.9 kB] 101s Get:240 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-cftime arm64 1.6.4-2 [208 kB] 101s Get:241 http://ftpmaster.internal/ubuntu questing/main arm64 python3-defusedxml all 0.7.1-3 [42.2 kB] 101s Get:242 http://ftpmaster.internal/ubuntu questing/main arm64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB] 101s Get:243 http://ftpmaster.internal/ubuntu questing/main arm64 python3-roman all 5.0-1 [10.3 kB] 101s Get:244 http://ftpmaster.internal/ubuntu questing/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 101s Get:245 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-email-validator all 2.2.0-1 [28.5 kB] 101s Get:246 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 101s Get:247 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-frozendict all 2.4.6-1 [13.2 kB] 101s Get:248 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-h5py-serial arm64 3.13.0-1 [1126 kB] 101s Get:249 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-h5py all 3.13.0-1 [7978 B] 101s Get:250 http://ftpmaster.internal/ubuntu questing/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 101s Get:251 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 101s Get:252 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-joblib all 1.4.2-3 [205 kB] 101s Get:253 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 101s Get:254 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 101s Get:255 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-latexcodec all 3.0.0-1 [16.6 kB] 101s Get:256 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pytz all 2025.1-3 [162 kB] 101s Get:257 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tz all 2025.1-3 [1866 B] 101s Get:258 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-8build1 [4586 kB] 101s Get:259 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 101s Get:260 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pydantic-core arm64 2.27.2-1build1 [1489 kB] 101s Get:261 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pydantic arm64 2.10.6-1 [288 kB] 101s Get:262 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-tqdm all 4.67.1-3 [91.6 kB] 101s Get:263 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-ruamel.yaml.clib arm64 0.2.12+ds-1build1 [138 kB] 101s Get:264 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 101s Get:265 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-monty all 2025.3.3-1 [40.4 kB] 101s Get:266 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-nbformat all 5.9.1-1 [41.2 kB] 101s Get:267 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-netcdf4 arm64 1.7.2-1build4 [587 kB] 102s Get:268 http://ftpmaster.internal/ubuntu questing/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 102s Get:269 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-openbabel arm64 3.1.1+dfsg-11ubuntu3 [607 kB] 102s Get:270 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-palettable all 3.3.3-1 [81.3 kB] 102s Get:271 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-phonopy arm64 2.35.0-1 [321 kB] 102s Get:272 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 102s Get:273 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 102s Get:274 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 102s Get:275 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pybtex all 0.24.0-4 [70.0 kB] 102s Get:276 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tabulate all 0.9.0-1 [45.3 kB] 102s Get:277 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-uncertainties all 3.2.2-1 [51.4 kB] 102s Get:278 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pymatgen arm64 2025.2.18+dfsg1-4 [2623 kB] 102s Get:279 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pytest all 8.3.5-1 [252 kB] 102s Get:280 http://ftpmaster.internal/ubuntu questing/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 102s Get:281 http://ftpmaster.internal/ubuntu questing/main arm64 sphinx-common all 8.1.3-5 [663 kB] 102s Get:282 http://ftpmaster.internal/ubuntu questing/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 102s Get:283 http://ftpmaster.internal/ubuntu questing/main arm64 python3-sphinx all 8.1.3-5 [474 kB] 102s Get:284 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 102s Get:285 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB] 102s Get:286 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 102s Get:287 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-mpi4py arm64 4.0.3-3ubuntu1 [730 kB] 102s Get:288 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-vtk9 arm64 9.3.0+dfsg1-4ubuntu1 [7918 kB] 103s Fetched 531 MB in 16s (32.3 MB/s) 103s Selecting previously unselected package fonts-lato. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85225 files and directories currently installed.) 103s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 103s Unpacking fonts-lato (2.015-1) ... 103s Selecting previously unselected package python3-numpy-dev:arm64. 103s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 103s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 103s Selecting previously unselected package libblas3:arm64. 103s Preparing to unpack .../002-libblas3_3.12.1-2_arm64.deb ... 104s Unpacking libblas3:arm64 (3.12.1-2) ... 104s Selecting previously unselected package libgfortran5:arm64. 104s Preparing to unpack .../003-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 104s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 104s Selecting previously unselected package liblapack3:arm64. 104s Preparing to unpack .../004-liblapack3_3.12.1-2_arm64.deb ... 104s Unpacking liblapack3:arm64 (3.12.1-2) ... 104s Selecting previously unselected package python3-numpy. 104s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 104s Unpacking python3-numpy (1:2.2.3+ds-5) ... 104s Selecting previously unselected package sgml-base. 104s Preparing to unpack .../006-sgml-base_1.31_all.deb ... 104s Unpacking sgml-base (1.31) ... 104s Selecting previously unselected package m4. 104s Preparing to unpack .../007-m4_1.4.19-7_arm64.deb ... 104s Unpacking m4 (1.4.19-7) ... 104s Selecting previously unselected package autoconf. 104s Preparing to unpack .../008-autoconf_2.72-3ubuntu1_all.deb ... 104s Unpacking autoconf (2.72-3ubuntu1) ... 104s Selecting previously unselected package autotools-dev. 104s Preparing to unpack .../009-autotools-dev_20220109.1_all.deb ... 104s Unpacking autotools-dev (20220109.1) ... 104s Selecting previously unselected package automake. 104s Preparing to unpack .../010-automake_1%3a1.17-3ubuntu1_all.deb ... 104s Unpacking automake (1:1.17-3ubuntu1) ... 104s Selecting previously unselected package autopoint. 104s Preparing to unpack .../011-autopoint_0.23.1-1_all.deb ... 104s Unpacking autopoint (0.23.1-1) ... 104s Selecting previously unselected package libtcl8.6:arm64. 104s Preparing to unpack .../012-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 104s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 104s Selecting previously unselected package fonts-dejavu-mono. 104s Preparing to unpack .../013-fonts-dejavu-mono_2.37-8_all.deb ... 104s Unpacking fonts-dejavu-mono (2.37-8) ... 104s Selecting previously unselected package fonts-dejavu-core. 104s Preparing to unpack .../014-fonts-dejavu-core_2.37-8_all.deb ... 104s Unpacking fonts-dejavu-core (2.37-8) ... 104s Selecting previously unselected package fontconfig-config. 104s Preparing to unpack .../015-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 104s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 104s Selecting previously unselected package libfontconfig1:arm64. 104s Preparing to unpack .../016-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 104s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 104s Selecting previously unselected package libxrender1:arm64. 104s Preparing to unpack .../017-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 104s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 104s Selecting previously unselected package libxft2:arm64. 104s Preparing to unpack .../018-libxft2_2.3.6-1build1_arm64.deb ... 104s Unpacking libxft2:arm64 (2.3.6-1build1) ... 104s Selecting previously unselected package x11-common. 104s Preparing to unpack .../019-x11-common_1%3a7.7+23ubuntu4_all.deb ... 104s Unpacking x11-common (1:7.7+23ubuntu4) ... 104s Selecting previously unselected package libxss1:arm64. 105s Preparing to unpack .../020-libxss1_1%3a1.2.3-1build3_arm64.deb ... 105s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 105s Selecting previously unselected package libtk8.6:arm64. 105s Preparing to unpack .../021-libtk8.6_8.6.16-1_arm64.deb ... 105s Unpacking libtk8.6:arm64 (8.6.16-1) ... 105s Selecting previously unselected package tk8.6-blt2.5. 105s Preparing to unpack .../022-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 105s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 105s Selecting previously unselected package blt. 105s Preparing to unpack .../023-blt_2.5.3+dfsg-8_arm64.deb ... 105s Unpacking blt (2.5.3+dfsg-8) ... 105s Selecting previously unselected package libisl23:arm64. 105s Preparing to unpack .../024-libisl23_0.27-1_arm64.deb ... 105s Unpacking libisl23:arm64 (0.27-1) ... 105s Selecting previously unselected package libmpc3:arm64. 105s Preparing to unpack .../025-libmpc3_1.3.1-1build2_arm64.deb ... 105s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 105s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 105s Preparing to unpack .../026-cpp-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 105s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 105s Selecting previously unselected package cpp-14. 105s Preparing to unpack .../027-cpp-14_14.2.0-19ubuntu2_arm64.deb ... 105s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 105s Selecting previously unselected package cpp-aarch64-linux-gnu. 105s Preparing to unpack .../028-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 105s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 105s Selecting previously unselected package cpp. 105s Preparing to unpack .../029-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 105s Unpacking cpp (4:14.2.0-1ubuntu1) ... 105s Selecting previously unselected package libcc1-0:arm64. 105s Preparing to unpack .../030-libcc1-0_15-20250404-0ubuntu1_arm64.deb ... 105s Unpacking libcc1-0:arm64 (15-20250404-0ubuntu1) ... 105s Selecting previously unselected package libgomp1:arm64. 105s Preparing to unpack .../031-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 105s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 105s Selecting previously unselected package libitm1:arm64. 105s Preparing to unpack .../032-libitm1_15-20250404-0ubuntu1_arm64.deb ... 105s Unpacking libitm1:arm64 (15-20250404-0ubuntu1) ... 105s Selecting previously unselected package libasan8:arm64. 105s Preparing to unpack .../033-libasan8_15-20250404-0ubuntu1_arm64.deb ... 105s Unpacking libasan8:arm64 (15-20250404-0ubuntu1) ... 105s Selecting previously unselected package liblsan0:arm64. 105s Preparing to unpack .../034-liblsan0_15-20250404-0ubuntu1_arm64.deb ... 105s Unpacking liblsan0:arm64 (15-20250404-0ubuntu1) ... 105s Selecting previously unselected package libtsan2:arm64. 105s Preparing to unpack .../035-libtsan2_15-20250404-0ubuntu1_arm64.deb ... 105s Unpacking libtsan2:arm64 (15-20250404-0ubuntu1) ... 105s Selecting previously unselected package libubsan1:arm64. 105s Preparing to unpack .../036-libubsan1_15-20250404-0ubuntu1_arm64.deb ... 105s Unpacking libubsan1:arm64 (15-20250404-0ubuntu1) ... 105s Selecting previously unselected package libhwasan0:arm64. 105s Preparing to unpack .../037-libhwasan0_15-20250404-0ubuntu1_arm64.deb ... 105s Unpacking libhwasan0:arm64 (15-20250404-0ubuntu1) ... 106s Selecting previously unselected package libgcc-14-dev:arm64. 106s Preparing to unpack .../038-libgcc-14-dev_14.2.0-19ubuntu2_arm64.deb ... 106s Unpacking libgcc-14-dev:arm64 (14.2.0-19ubuntu2) ... 106s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 106s Preparing to unpack .../039-gcc-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 106s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 106s Selecting previously unselected package gcc-14. 106s Preparing to unpack .../040-gcc-14_14.2.0-19ubuntu2_arm64.deb ... 106s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 106s Selecting previously unselected package gcc-aarch64-linux-gnu. 106s Preparing to unpack .../041-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 106s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 106s Selecting previously unselected package gcc. 106s Preparing to unpack .../042-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 106s Unpacking gcc (4:14.2.0-1ubuntu1) ... 106s Selecting previously unselected package libstdc++-14-dev:arm64. 106s Preparing to unpack .../043-libstdc++-14-dev_14.2.0-19ubuntu2_arm64.deb ... 106s Unpacking libstdc++-14-dev:arm64 (14.2.0-19ubuntu2) ... 106s Selecting previously unselected package g++-14-aarch64-linux-gnu. 106s Preparing to unpack .../044-g++-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 106s Unpacking g++-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 106s Selecting previously unselected package g++-14. 107s Preparing to unpack .../045-g++-14_14.2.0-19ubuntu2_arm64.deb ... 107s Unpacking g++-14 (14.2.0-19ubuntu2) ... 107s Selecting previously unselected package g++-aarch64-linux-gnu. 107s Preparing to unpack .../046-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 107s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 107s Selecting previously unselected package g++. 107s Preparing to unpack .../047-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 107s Unpacking g++ (4:14.2.0-1ubuntu1) ... 107s Selecting previously unselected package build-essential. 107s Preparing to unpack .../048-build-essential_12.12ubuntu1_arm64.deb ... 107s Unpacking build-essential (12.12ubuntu1) ... 107s Selecting previously unselected package cython3. 107s Preparing to unpack .../049-cython3_3.0.11+dfsg-2ubuntu2_arm64.deb ... 107s Unpacking cython3 (3.0.11+dfsg-2ubuntu2) ... 107s Selecting previously unselected package libdebhelper-perl. 107s Preparing to unpack .../050-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 107s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 107s Selecting previously unselected package libtool. 107s Preparing to unpack .../051-libtool_2.5.4-4_all.deb ... 107s Unpacking libtool (2.5.4-4) ... 107s Selecting previously unselected package dh-autoreconf. 107s Preparing to unpack .../052-dh-autoreconf_20_all.deb ... 107s Unpacking dh-autoreconf (20) ... 107s Selecting previously unselected package libarchive-zip-perl. 107s Preparing to unpack .../053-libarchive-zip-perl_1.68-1_all.deb ... 107s Unpacking libarchive-zip-perl (1.68-1) ... 107s Selecting previously unselected package libfile-stripnondeterminism-perl. 107s Preparing to unpack .../054-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 107s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 107s Selecting previously unselected package dh-strip-nondeterminism. 107s Preparing to unpack .../055-dh-strip-nondeterminism_1.14.1-2_all.deb ... 107s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 107s Selecting previously unselected package debugedit. 107s Preparing to unpack .../056-debugedit_1%3a5.1-2_arm64.deb ... 107s Unpacking debugedit (1:5.1-2) ... 107s Selecting previously unselected package dwz. 107s Preparing to unpack .../057-dwz_0.15-1build6_arm64.deb ... 107s Unpacking dwz (0.15-1build6) ... 107s Selecting previously unselected package gettext. 107s Preparing to unpack .../058-gettext_0.23.1-1_arm64.deb ... 107s Unpacking gettext (0.23.1-1) ... 107s Selecting previously unselected package intltool-debian. 107s Preparing to unpack .../059-intltool-debian_0.35.0+20060710.6_all.deb ... 107s Unpacking intltool-debian (0.35.0+20060710.6) ... 107s Selecting previously unselected package po-debconf. 107s Preparing to unpack .../060-po-debconf_1.0.21+nmu1_all.deb ... 107s Unpacking po-debconf (1.0.21+nmu1) ... 107s Selecting previously unselected package debhelper. 107s Preparing to unpack .../061-debhelper_13.24.1ubuntu2_all.deb ... 107s Unpacking debhelper (13.24.1ubuntu2) ... 107s Selecting previously unselected package dh-python. 107s Preparing to unpack .../062-dh-python_6.20250308_all.deb ... 107s Unpacking dh-python (6.20250308) ... 107s Selecting previously unselected package xml-core. 107s Preparing to unpack .../063-xml-core_0.19_all.deb ... 107s Unpacking xml-core (0.19) ... 107s Selecting previously unselected package docutils-common. 107s Preparing to unpack .../064-docutils-common_0.21.2+dfsg-2_all.deb ... 107s Unpacking docutils-common (0.21.2+dfsg-2) ... 107s Selecting previously unselected package fontconfig. 107s Preparing to unpack .../065-fontconfig_2.15.0-2.2ubuntu1_arm64.deb ... 107s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 107s Selecting previously unselected package fonts-font-awesome. 107s Preparing to unpack .../066-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 107s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 107s Selecting previously unselected package fonts-glyphicons-halflings. 107s Preparing to unpack .../067-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 107s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 107s Selecting previously unselected package fonts-lyx. 107s Preparing to unpack .../068-fonts-lyx_2.4.3-1_all.deb ... 107s Unpacking fonts-lyx (2.4.3-1) ... 107s Selecting previously unselected package fonts-mathjax. 107s Preparing to unpack .../069-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 107s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 108s Selecting previously unselected package libaec0:arm64. 108s Preparing to unpack .../070-libaec0_1.1.3-1_arm64.deb ... 108s Unpacking libaec0:arm64 (1.1.3-1) ... 108s Selecting previously unselected package libllvm17t64:arm64. 108s Preparing to unpack .../071-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 108s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 108s Selecting previously unselected package libamd-comgr2:arm64. 108s Preparing to unpack .../072-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 108s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 109s Selecting previously unselected package libhsakmt1:arm64. 109s Preparing to unpack .../073-libhsakmt1_5.7.0-1build1_arm64.deb ... 109s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 109s Selecting previously unselected package libhsa-runtime64-1. 109s Preparing to unpack .../074-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 109s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 109s Selecting previously unselected package libamdhip64-5. 109s Preparing to unpack .../075-libamdhip64-5_5.7.1-5build1_arm64.deb ... 109s Unpacking libamdhip64-5 (5.7.1-5build1) ... 109s Selecting previously unselected package libboost-iostreams1.83.0:arm64. 109s Preparing to unpack .../076-libboost-iostreams1.83.0_1.83.0-4.2ubuntu1_arm64.deb ... 109s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 109s Selecting previously unselected package libpixman-1-0:arm64. 109s Preparing to unpack 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libdouble-conversion3:arm64 (3.3.1-1) ... 109s Selecting previously unselected package libwayland-server0:arm64. 109s Preparing to unpack .../083-libwayland-server0_1.23.1-3_arm64.deb ... 109s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 109s Selecting previously unselected package libx11-xcb1:arm64. 109s Preparing to unpack .../084-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 109s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 109s Selecting previously unselected package libxcb-dri3-0:arm64. 109s Preparing to unpack .../085-libxcb-dri3-0_1.17.0-2_arm64.deb ... 109s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 109s Selecting previously unselected package libxcb-present0:arm64. 109s Preparing to unpack .../086-libxcb-present0_1.17.0-2_arm64.deb ... 109s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 109s Selecting previously unselected package libxcb-randr0:arm64. 109s Preparing to unpack .../087-libxcb-randr0_1.17.0-2_arm64.deb ... 109s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 109s 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unselected package libfabric1:arm64. 110s Preparing to unpack .../098-libfabric1_1.17.0-3.1_arm64.deb ... 110s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 110s Selecting previously unselected package libvulkan1:arm64. 110s Preparing to unpack .../099-libvulkan1_1.4.304.0-1_arm64.deb ... 110s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 110s Selecting previously unselected package libgl1-mesa-dri:arm64. 110s Preparing to unpack .../100-libgl1-mesa-dri_25.0.3-1ubuntu2_arm64.deb ... 110s Unpacking libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 110s Selecting previously unselected package libglvnd0:arm64. 110s Preparing to unpack .../101-libglvnd0_1.7.0-1build1_arm64.deb ... 110s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 110s Selecting previously unselected package libxcb-glx0:arm64. 110s Preparing to unpack .../102-libxcb-glx0_1.17.0-2_arm64.deb ... 110s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 110s Selecting previously unselected package libxxf86vm1:arm64. 110s Preparing to unpack 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libglew2.2:arm64 (2.2.0-4build1) ... 110s Selecting previously unselected package libgraphite2-3:arm64. 110s Preparing to unpack .../109-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 110s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 110s Selecting previously unselected package libharfbuzz0b:arm64. 110s Preparing to unpack .../110-libharfbuzz0b_10.2.0-1_arm64.deb ... 110s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 110s Selecting previously unselected package libsz2:arm64. 110s Preparing to unpack .../111-libsz2_1.1.3-1_arm64.deb ... 110s Unpacking libsz2:arm64 (1.1.3-1) ... 110s Selecting previously unselected package libhdf5-310:arm64. 110s Preparing to unpack .../112-libhdf5-310_1.14.5+repack-3_arm64.deb ... 110s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 110s Selecting previously unselected package libhdf5-hl-310:arm64. 110s Preparing to unpack .../113-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 110s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 110s Selecting previously unselected package libhwloc15:arm64. 110s Preparing to unpack .../114-libhwloc15_2.12.0-1_arm64.deb ... 110s Unpacking libhwloc15:arm64 (2.12.0-1) ... 110s Selecting previously unselected package libice6:arm64. 110s Preparing to unpack .../115-libice6_2%3a1.1.1-1_arm64.deb ... 110s Unpacking libice6:arm64 (2:1.1.1-1) ... 110s Selecting previously unselected package libimagequant0:arm64. 110s Preparing to unpack .../116-libimagequant0_2.18.0-1build1_arm64.deb ... 110s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 110s Selecting previously unselected package libinchi1.07. 110s Preparing to unpack .../117-libinchi1.07_1.07.3+dfsg-1_arm64.deb ... 110s Unpacking libinchi1.07 (1.07.3+dfsg-1) ... 110s Selecting previously unselected package libwacom-common. 110s Preparing to unpack .../118-libwacom-common_2.14.0-1_all.deb ... 110s Unpacking libwacom-common (2.14.0-1) ... 110s Selecting previously unselected package libwacom9:arm64. 110s Preparing to unpack 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libjson-perl. 111s Preparing to unpack .../130-libjson-perl_4.10000-1_all.deb ... 111s Unpacking libjson-perl (4.10000-1) ... 111s Selecting previously unselected package libjsoncpp26:arm64. 111s Preparing to unpack .../131-libjsoncpp26_1.9.6-3_arm64.deb ... 111s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 111s Selecting previously unselected package liblbfgsb0:arm64. 111s Preparing to unpack .../132-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 111s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 111s Selecting previously unselected package liblcms2-2:arm64. 111s Preparing to unpack .../133-liblcms2-2_2.16-2_arm64.deb ... 111s Unpacking liblcms2-2:arm64 (2.16-2) ... 111s Selecting previously unselected package liblerc4:arm64. 111s Preparing to unpack .../134-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 111s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 111s Selecting previously unselected package liblzf1:arm64. 111s Preparing to unpack .../135-liblzf1_3.6-4_arm64.deb ... 111s 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package libmunge2:arm64. 111s Preparing to unpack .../141-libmunge2_0.5.16-1_arm64.deb ... 111s Unpacking libmunge2:arm64 (0.5.16-1) ... 111s Selecting previously unselected package libpciaccess0:arm64. 111s Preparing to unpack .../142-libpciaccess0_0.17-3build1_arm64.deb ... 111s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 111s Selecting previously unselected package libxnvctrl0:arm64. 111s Preparing to unpack .../143-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 111s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 111s Selecting previously unselected package ocl-icd-libopencl1:arm64. 111s Preparing to unpack .../144-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 111s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 111s Selecting previously unselected package libhwloc-plugins:arm64. 111s Preparing to unpack .../145-libhwloc-plugins_2.12.0-1_arm64.deb ... 111s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 111s Selecting previously unselected package libpmix2t64:arm64. 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libpcre2-16-0:arm64 (10.45-1) ... 112s Selecting previously unselected package proj-data. 112s Preparing to unpack .../152-proj-data_9.5.1-1_all.deb ... 112s Unpacking proj-data (9.5.1-1) ... 112s Selecting previously unselected package libjbig0:arm64. 112s Preparing to unpack .../153-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 112s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 112s Selecting previously unselected package libsharpyuv0:arm64. 112s Preparing to unpack .../154-libsharpyuv0_1.5.0-0.1_arm64.deb ... 112s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 112s Selecting previously unselected package libwebp7:arm64. 112s Preparing to unpack .../155-libwebp7_1.5.0-0.1_arm64.deb ... 112s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 112s Selecting previously unselected package libtiff6:arm64. 112s Preparing to unpack .../156-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 112s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 112s Selecting previously unselected package libproj25:arm64. 112s Preparing to unpack .../157-libproj25_9.5.1-1_arm64.deb ... 112s Unpacking libproj25:arm64 (9.5.1-1) ... 112s Selecting previously unselected package zlib1g-dev:arm64. 112s Preparing to unpack .../158-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 112s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 112s Selecting previously unselected package libpython3.13-dev:arm64. 112s Preparing to unpack .../159-libpython3.13-dev_3.13.3-1_arm64.deb ... 112s Unpacking libpython3.13-dev:arm64 (3.13.3-1) ... 112s Selecting previously unselected package libpython3-dev:arm64. 112s Preparing to unpack .../160-libpython3-dev_3.13.3-1_arm64.deb ... 112s Unpacking libpython3-dev:arm64 (3.13.3-1) ... 112s Selecting previously unselected package libpython3-all-dev:arm64. 112s Preparing to unpack .../161-libpython3-all-dev_3.13.3-1_arm64.deb ... 112s Unpacking libpython3-all-dev:arm64 (3.13.3-1) ... 112s Selecting previously unselected package libqhull-r8.0:arm64. 112s Preparing to unpack .../162-libqhull-r8.0_2020.2-6build1_arm64.deb ... 112s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 112s Selecting previously unselected package libqt5core5t64:arm64. 112s Preparing to unpack .../163-libqt5core5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 112s Unpacking libqt5core5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 112s Selecting previously unselected package libqt5dbus5t64:arm64. 112s Preparing to unpack .../164-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 112s Unpacking libqt5dbus5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 112s Selecting previously unselected package libegl1:arm64. 112s Preparing to unpack .../165-libegl1_1.7.0-1build1_arm64.deb ... 112s Unpacking libegl1:arm64 (1.7.0-1build1) ... 112s Selecting previously unselected package libqt5network5t64:arm64. 112s Preparing to unpack .../166-libqt5network5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 112s Unpacking libqt5network5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 112s Selecting previously unselected package libsm6:arm64. 113s Preparing to unpack .../167-libsm6_2%3a1.2.4-1_arm64.deb ... 113s Unpacking libsm6:arm64 (2:1.2.4-1) ... 113s Selecting previously unselected package libxcb-icccm4:arm64. 113s Preparing to unpack .../168-libxcb-icccm4_0.4.2-1_arm64.deb ... 113s Unpacking libxcb-icccm4:arm64 (0.4.2-1) ... 113s Selecting previously unselected package libxcb-util1:arm64. 113s Preparing to unpack .../169-libxcb-util1_0.4.1-1_arm64.deb ... 113s Unpacking libxcb-util1:arm64 (0.4.1-1) ... 113s Selecting previously unselected package libxcb-image0:arm64. 113s Preparing to unpack .../170-libxcb-image0_0.4.0-2build1_arm64.deb ... 113s Unpacking libxcb-image0:arm64 (0.4.0-2build1) ... 113s Selecting previously unselected package libxcb-keysyms1:arm64. 113s Preparing to unpack .../171-libxcb-keysyms1_0.4.1-1_arm64.deb ... 113s Unpacking libxcb-keysyms1:arm64 (0.4.1-1) ... 113s Selecting previously unselected package libxcb-render-util0:arm64. 113s Preparing to unpack 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... 113s Unpacking libxkbcommon-x11-0:arm64 (1.7.0-2) ... 113s Selecting previously unselected package libqt5gui5t64:arm64. 113s Preparing to unpack .../178-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 113s Unpacking libqt5gui5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 113s Selecting previously unselected package libqt5widgets5t64:arm64. 113s Preparing to unpack .../179-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 113s Unpacking libqt5widgets5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 113s Selecting previously unselected package libraqm0:arm64. 113s Preparing to unpack .../180-libraqm0_0.10.2-1_arm64.deb ... 113s Unpacking libraqm0:arm64 (0.10.2-1) ... 113s Selecting previously unselected package libsymspg2:arm64. 113s Preparing to unpack .../181-libsymspg2_2.5.0-2build1_arm64.deb ... 113s Unpacking libsymspg2:arm64 (2.5.0-2build1) ... 113s Selecting previously unselected package libtbbbind-2-5:arm64. 113s Preparing to unpack .../182-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 113s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 113s Selecting previously unselected package libtbbmalloc2:arm64. 113s Preparing to unpack .../183-libtbbmalloc2_2022.0.0-2_arm64.deb ... 113s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 113s Selecting previously unselected package libtbb12:arm64. 113s Preparing to unpack .../184-libtbb12_2022.0.0-2_arm64.deb ... 113s Unpacking libtbb12:arm64 (2022.0.0-2) ... 113s Selecting previously unselected package libtheoradec1:arm64. 113s Preparing to unpack .../185-libtheoradec1_1.2.0~alpha1+dfsg-6_arm64.deb ... 113s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 113s Selecting previously unselected package libtheoraenc1:arm64. 113s Preparing to unpack .../186-libtheoraenc1_1.2.0~alpha1+dfsg-6_arm64.deb ... 113s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 113s Selecting previously unselected package libopengl0:arm64. 113s Preparing to unpack .../187-libopengl0_1.7.0-1build1_arm64.deb ... 113s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 113s Selecting previously unselected package libvtk9.3:arm64. 113s Preparing to unpack .../188-libvtk9.3_9.3.0+dfsg1-4ubuntu1_arm64.deb ... 113s Unpacking libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 114s Selecting previously unselected package libvtk9.3-qt:arm64. 114s Preparing to unpack .../189-libvtk9.3-qt_9.3.0+dfsg1-4ubuntu1_arm64.deb ... 114s Unpacking libvtk9.3-qt:arm64 (9.3.0+dfsg1-4ubuntu1) ... 114s Selecting previously unselected package libwebpdemux2:arm64. 114s Preparing to unpack .../190-libwebpdemux2_1.5.0-0.1_arm64.deb ... 114s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 114s Selecting previously unselected package libwebpmux3:arm64. 114s Preparing to unpack .../191-libwebpmux3_1.5.0-0.1_arm64.deb ... 114s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 114s Selecting previously unselected package libxslt1.1:arm64. 114s Preparing to unpack .../192-libxslt1.1_1.1.39-0exp1ubuntu4_arm64.deb ... 114s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu4) ... 114s Selecting previously unselected package openmpi-common. 114s Preparing to unpack .../193-openmpi-common_5.0.7-1_all.deb ... 114s Unpacking openmpi-common (5.0.7-1) ... 114s Selecting previously unselected package openmpi-bin. 114s Preparing to unpack .../194-openmpi-bin_5.0.7-1_arm64.deb ... 114s Unpacking openmpi-bin (5.0.7-1) ... 114s Selecting previously unselected package packmol. 114s Preparing to unpack .../195-packmol_1%3a20.15.3-1_arm64.deb ... 114s Unpacking packmol (1:20.15.3-1) ... 114s Selecting previously unselected package python3-pyproject-hooks. 114s Preparing to unpack .../196-python3-pyproject-hooks_1.2.0-1_all.deb ... 114s Unpacking python3-pyproject-hooks (1.2.0-1) ... 114s Selecting previously unselected package python3-toml. 114s Preparing to unpack .../197-python3-toml_0.10.2-1_all.deb ... 114s Unpacking python3-toml (0.10.2-1) ... 114s Selecting previously unselected package python3-wheel. 114s Preparing to unpack .../198-python3-wheel_0.45.1-1_all.deb ... 114s Unpacking python3-wheel (0.45.1-1) ... 114s Selecting previously unselected package python3-build. 114s Preparing to unpack .../199-python3-build_1.2.2-1_all.deb ... 114s Unpacking python3-build (1.2.2-1) ... 114s Selecting previously unselected package python3-installer. 114s Preparing to unpack .../200-python3-installer_0.7.0+dfsg1-3_all.deb ... 114s Unpacking python3-installer (0.7.0+dfsg1-3) ... 114s Selecting previously unselected package pybuild-plugin-pyproject. 114s Preparing to unpack .../201-pybuild-plugin-pyproject_6.20250308_all.deb ... 114s Unpacking pybuild-plugin-pyproject (6.20250308) ... 114s Selecting previously unselected package pymatgen-test-files. 114s Preparing to unpack .../202-pymatgen-test-files_2025.2.18-1_all.deb ... 114s Unpacking pymatgen-test-files (2025.2.18-1) ... 117s Selecting previously unselected package python-matplotlib-data. 117s Preparing to unpack .../203-python-matplotlib-data_3.10.1+dfsg1-3_all.deb ... 117s Unpacking python-matplotlib-data (3.10.1+dfsg1-3) ... 117s Selecting previously unselected package libjs-mathjax. 117s Preparing to unpack .../204-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 117s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 117s Selecting previously unselected package sphinx-rtd-theme-common. 117s Preparing to unpack .../205-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... 117s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 117s Selecting previously unselected package python-pymatgen-doc. 117s Preparing to unpack .../206-python-pymatgen-doc_2025.2.18+dfsg1-4_all.deb ... 117s Unpacking python-pymatgen-doc (2025.2.18+dfsg1-4) ... 117s Selecting previously unselected package python3-all. 117s Preparing to unpack .../207-python3-all_3.13.3-1_arm64.deb ... 117s Unpacking python3-all (3.13.3-1) ... 117s Selecting previously unselected package python3.13-dev. 117s Preparing to unpack .../208-python3.13-dev_3.13.3-1_arm64.deb ... 117s Unpacking python3.13-dev (3.13.3-1) ... 117s Selecting previously unselected package python3-dev. 117s Preparing to unpack .../209-python3-dev_3.13.3-1_arm64.deb ... 117s Unpacking python3-dev (3.13.3-1) ... 117s Selecting previously unselected package python3-all-dev. 117s Preparing to unpack .../210-python3-all-dev_3.13.3-1_arm64.deb ... 117s Unpacking python3-all-dev (3.13.3-1) ... 117s Selecting previously unselected package python3-annotated-types. 118s Preparing to unpack .../211-python3-annotated-types_0.7.0-1_all.deb ... 118s Unpacking python3-annotated-types (0.7.0-1) ... 118s Selecting previously unselected package python3-decorator. 118s Preparing to unpack .../212-python3-decorator_5.1.1-5_all.deb ... 118s Unpacking python3-decorator (5.1.1-5) ... 118s Selecting previously unselected package python3-scipy. 118s Preparing to unpack .../213-python3-scipy_1.14.1-4ubuntu2_arm64.deb ... 118s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 118s Selecting previously unselected package python3-spglib. 118s Preparing to unpack .../214-python3-spglib_2.5.0-2build1_arm64.deb ... 118s Unpacking python3-spglib (2.5.0-2build1) ... 118s Selecting previously unselected package libopenjp2-7:arm64. 118s Preparing to unpack .../215-libopenjp2-7_2.5.3-2_arm64.deb ... 118s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 118s Selecting previously unselected package python3-pil:arm64. 118s Preparing to unpack .../216-python3-pil_11.1.0-5build1_arm64.deb ... 118s Unpacking python3-pil:arm64 (11.1.0-5build1) ... 118s Selecting previously unselected package python3.13-tk. 118s Preparing to unpack .../217-python3.13-tk_3.13.3-1_arm64.deb ... 118s Unpacking python3.13-tk (3.13.3-1) ... 118s Selecting previously unselected package python3-tk:arm64. 118s Preparing to unpack .../218-python3-tk_3.13.3-1_arm64.deb ... 118s Unpacking python3-tk:arm64 (3.13.3-1) ... 118s Selecting previously unselected package python3-pil.imagetk:arm64. 118s Preparing to unpack .../219-python3-pil.imagetk_11.1.0-5build1_arm64.deb ... 118s Unpacking python3-pil.imagetk:arm64 (11.1.0-5build1) ... 118s Selecting previously unselected package python3-contourpy. 118s Preparing to unpack .../220-python3-contourpy_1.3.1-1build1_arm64.deb ... 118s Unpacking python3-contourpy (1.3.1-1build1) ... 118s Selecting previously unselected package python3-cycler. 118s Preparing to unpack .../221-python3-cycler_0.12.1-1_all.deb ... 118s Unpacking python3-cycler (0.12.1-1) ... 118s Selecting previously unselected package python3-brotli. 118s Preparing to unpack .../222-python3-brotli_1.1.0-2build4_arm64.deb ... 118s Unpacking python3-brotli (1.1.0-2build4) ... 118s Selecting previously unselected package python3-platformdirs. 118s Preparing to unpack .../223-python3-platformdirs_4.3.6-1_all.deb ... 118s Unpacking python3-platformdirs (4.3.6-1) ... 118s Selecting previously unselected package python3-fs. 118s Preparing to unpack .../224-python3-fs_2.4.16-7_all.deb ... 118s Unpacking python3-fs (2.4.16-7) ... 118s Selecting previously unselected package python3-lxml:arm64. 118s Preparing to unpack .../225-python3-lxml_5.3.2-1_arm64.deb ... 118s Unpacking python3-lxml:arm64 (5.3.2-1) ... 118s Selecting previously unselected package python3-lz4. 118s Preparing to unpack .../226-python3-lz4_4.4.0+dfsg-1build1_arm64.deb ... 118s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ... 118s Selecting previously unselected package python3-mpmath. 118s Preparing to unpack .../227-python3-mpmath_1.3.0-1_all.deb ... 118s Unpacking python3-mpmath (1.3.0-1) ... 119s Selecting previously unselected package python3-sympy. 119s Preparing to unpack .../228-python3-sympy_1.13.3-5_all.deb ... 119s Unpacking python3-sympy (1.13.3-5) ... 119s Selecting previously unselected package python3-ufolib2. 119s Preparing to unpack .../229-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 119s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 119s Selecting previously unselected package python3-unicodedata2. 119s Preparing to unpack .../230-python3-unicodedata2_15.1.0+ds-1build3_arm64.deb ... 119s Unpacking python3-unicodedata2 (15.1.0+ds-1build3) ... 119s Selecting previously unselected package unicode-data. 119s Preparing to unpack .../231-unicode-data_15.1.0-1_all.deb ... 119s Unpacking unicode-data (15.1.0-1) ... 119s Selecting previously unselected package python3-fonttools. 119s Preparing to unpack .../232-python3-fonttools_4.55.3-2build1_arm64.deb ... 119s Unpacking python3-fonttools (4.55.3-2build1) ... 119s Selecting previously unselected package python3-kiwisolver. 119s Preparing to unpack .../233-python3-kiwisolver_1.4.7-3build1_arm64.deb ... 119s Unpacking python3-kiwisolver (1.4.7-3build1) ... 119s Selecting previously unselected package python3-matplotlib. 119s Preparing to unpack .../234-python3-matplotlib_3.10.1+dfsg1-3_arm64.deb ... 119s Unpacking python3-matplotlib (3.10.1+dfsg1-3) ... 120s Selecting previously unselected package python3-ase. 120s Preparing to unpack .../235-python3-ase_3.24.0-1_all.deb ... 120s Unpacking python3-ase (3.24.0-1) ... 120s Selecting previously unselected package python3-soupsieve. 120s Preparing to unpack .../236-python3-soupsieve_2.6-1_all.deb ... 120s Unpacking python3-soupsieve (2.6-1) ... 120s Selecting previously unselected package python3-bs4. 120s Preparing to unpack .../237-python3-bs4_4.13.3-2_all.deb ... 120s Unpacking python3-bs4 (4.13.3-2) ... 120s Selecting previously unselected package python3-bson. 120s Preparing to unpack .../238-python3-bson_4.10.1-5build1_all.deb ... 120s Unpacking python3-bson (4.10.1-5build1) ... 120s Selecting previously unselected package python3-cftime. 120s Preparing to unpack .../239-python3-cftime_1.6.4-2_arm64.deb ... 120s Unpacking python3-cftime (1.6.4-2) ... 120s Selecting previously unselected package python3-defusedxml. 120s Preparing to unpack .../240-python3-defusedxml_0.7.1-3_all.deb ... 120s Unpacking python3-defusedxml (0.7.1-3) ... 120s Selecting previously unselected package python3-dnspython. 120s Preparing to unpack .../241-python3-dnspython_2.7.0-1ubuntu1_all.deb ... 120s Unpacking python3-dnspython (2.7.0-1ubuntu1) ... 120s Selecting previously unselected package python3-roman. 120s Preparing to unpack .../242-python3-roman_5.0-1_all.deb ... 120s Unpacking python3-roman (5.0-1) ... 120s Selecting previously unselected package python3-docutils. 120s Preparing to unpack .../243-python3-docutils_0.21.2+dfsg-2_all.deb ... 120s Unpacking python3-docutils (0.21.2+dfsg-2) ... 120s Selecting previously unselected package python3-email-validator. 120s Preparing to unpack .../244-python3-email-validator_2.2.0-1_all.deb ... 120s Unpacking python3-email-validator (2.2.0-1) ... 120s Selecting previously unselected package python3-fastjsonschema. 120s Preparing to unpack .../245-python3-fastjsonschema_2.21.1-1_all.deb ... 120s Unpacking python3-fastjsonschema (2.21.1-1) ... 120s Selecting previously unselected package python3-frozendict. 120s Preparing to unpack .../246-python3-frozendict_2.4.6-1_all.deb ... 120s Unpacking python3-frozendict (2.4.6-1) ... 120s Selecting previously unselected package python3-h5py-serial. 120s Preparing to unpack .../247-python3-h5py-serial_3.13.0-1_arm64.deb ... 120s Unpacking python3-h5py-serial (3.13.0-1) ... 120s Selecting previously unselected package python3-h5py. 120s Preparing to unpack .../248-python3-h5py_3.13.0-1_all.deb ... 120s Unpacking python3-h5py (3.13.0-1) ... 120s Selecting previously unselected package python3-imagesize. 120s Preparing to unpack .../249-python3-imagesize_1.4.1-1_all.deb ... 120s Unpacking python3-imagesize (1.4.1-1) ... 120s Selecting previously unselected package python3-iniconfig. 120s Preparing to unpack .../250-python3-iniconfig_1.1.1-2_all.deb ... 120s Unpacking python3-iniconfig (1.1.1-2) ... 120s Selecting previously unselected package python3-joblib. 120s Preparing to unpack .../251-python3-joblib_1.4.2-3_all.deb ... 120s Unpacking python3-joblib (1.4.2-3) ... 120s Selecting previously unselected package python3-traitlets. 120s Preparing to unpack .../252-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 120s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 120s Selecting previously unselected package python3-jupyter-core. 120s Preparing to unpack .../253-python3-jupyter-core_5.7.2-5_all.deb ... 120s Unpacking python3-jupyter-core (5.7.2-5) ... 120s Selecting previously unselected package python3-latexcodec. 120s Preparing to unpack .../254-python3-latexcodec_3.0.0-1_all.deb ... 120s Unpacking python3-latexcodec (3.0.0-1) ... 120s Selecting previously unselected package python3-pytz. 120s Preparing to unpack .../255-python3-pytz_2025.1-3_all.deb ... 120s Unpacking python3-pytz (2025.1-3) ... 120s Selecting previously unselected package python3-tz. 120s Preparing to unpack .../256-python3-tz_2025.1-3_all.deb ... 120s Unpacking python3-tz (2025.1-3) ... 121s Selecting previously unselected package python3-pandas-lib:arm64. 121s Preparing to unpack .../257-python3-pandas-lib_2.2.3+dfsg-8build1_arm64.deb ... 121s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-8build1) ... 121s Selecting previously unselected package python3-pandas. 121s Preparing to unpack .../258-python3-pandas_2.2.3+dfsg-8build1_all.deb ... 121s Unpacking python3-pandas (2.2.3+dfsg-8build1) ... 121s Selecting previously unselected package python3-pydantic-core. 121s Preparing to unpack .../259-python3-pydantic-core_2.27.2-1build1_arm64.deb ... 121s Unpacking python3-pydantic-core (2.27.2-1build1) ... 121s Selecting previously unselected package python3-pydantic. 121s Preparing to unpack .../260-python3-pydantic_2.10.6-1_arm64.deb ... 121s Unpacking python3-pydantic (2.10.6-1) ... 121s Selecting previously unselected package python3-tqdm. 121s Preparing to unpack .../261-python3-tqdm_4.67.1-3_all.deb ... 121s Unpacking python3-tqdm (4.67.1-3) ... 121s Selecting previously unselected package python3-ruamel.yaml.clib. 121s Preparing to unpack .../262-python3-ruamel.yaml.clib_0.2.12+ds-1build1_arm64.deb ... 121s Unpacking python3-ruamel.yaml.clib (0.2.12+ds-1build1) ... 121s Selecting previously unselected package python3-ruamel.yaml. 121s Preparing to unpack .../263-python3-ruamel.yaml_0.18.10+ds-1_all.deb ... 121s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ... 121s Selecting previously unselected package python3-monty. 121s Preparing to unpack .../264-python3-monty_2025.3.3-1_all.deb ... 121s Unpacking python3-monty (2025.3.3-1) ... 121s Selecting previously unselected package python3-nbformat. 121s Preparing to unpack .../265-python3-nbformat_5.9.1-1_all.deb ... 121s Unpacking python3-nbformat (5.9.1-1) ... 121s Selecting previously unselected package python3-netcdf4. 121s Preparing to unpack .../266-python3-netcdf4_1.7.2-1build4_arm64.deb ... 121s Unpacking python3-netcdf4 (1.7.2-1build4) ... 121s Selecting previously unselected package python3-networkx. 121s Preparing to unpack .../267-python3-networkx_3.2.1-4ubuntu1_all.deb ... 121s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 122s Selecting previously unselected package python3-openbabel. 122s Preparing to unpack .../268-python3-openbabel_3.1.1+dfsg-11ubuntu3_arm64.deb ... 122s Unpacking python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 122s Selecting previously unselected package python3-palettable. 122s Preparing to unpack .../269-python3-palettable_3.3.3-1_all.deb ... 122s Unpacking python3-palettable (3.3.3-1) ... 122s Selecting previously unselected package python3-phonopy. 122s Preparing to unpack .../270-python3-phonopy_2.35.0-1_arm64.deb ... 122s Unpacking python3-phonopy (2.35.0-1) ... 122s Selecting previously unselected package python3-tenacity. 122s Preparing to unpack .../271-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 122s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 122s Selecting previously unselected package python3-plotly. 122s Preparing to unpack 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exist 158s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 158s Setting up libvtk9.3-qt:arm64 (9.3.0+dfsg1-4ubuntu1) ... 158s Setting up mpi-default-bin (1.18) ... 158s Setting up debhelper (13.24.1ubuntu2) ... 158s Setting up python3-mpi4py (4.0.3-3ubuntu1) ... 158s Setting up python3-vtk9 (9.3.0+dfsg1-4ubuntu1) ... 158s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' 158s patn = re.compile (" \S") 158s Setting up python3-fonttools (4.55.3-2build1) ... 159s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 159s Setting up python3-matplotlib (3.10.1+dfsg1-3) ... 161s Setting up python3-ase (3.24.0-1) ... 162s Setting up python3-phonopy (2.35.0-1) ... 163s Setting up python3-pymatgen (2025.2.18+dfsg1-4) ... 164s Processing triggers for libc-bin (2.41-6ubuntu1) ... 164s Processing triggers for man-db (2.13.0-1) ... 165s Processing triggers for udev (257.4-1ubuntu3) ... 165s Processing triggers for install-info (7.1.1-1) ... 166s Processing triggers for sgml-base (1.31) ... 166s Setting up docutils-common (0.21.2+dfsg-2) ... 166s Processing triggers for sgml-base (1.31) ... 166s Setting up python3-docutils (0.21.2+dfsg-2) ... 166s Setting up python3-sphinx (8.1.3-5) ... 167s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 167s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... 168s autopkgtest [10:28:06]: test test-pymatgen: [----------------------- 168s skipping tests with SKIP_TEST_LIST=TestGenKpt TestHighSymmetryPoint test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_rotor_search_rrs BSDOSPlotterTest test_cdft_dc_parsing test_get_structure_by_id test_CifWriter test_read_write test_init test_get_site_symmetries test_babel_PC_with_RO_depth_0_vs_depth_10 test_fit test_rotor_search_wrs test_get_parchg (TestAnharmonicQuasiharmociDebyeApprox and test_gruneisen_parameter) 189s ============================= test session starts ============================== 189s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 189s rootdir: /tmp/autopkgtest.JaIr91/build.wJx/src 189s configfile: pyproject.toml 189s plugins: typeguard-4.4.2 189s collected 3117 items / 295 deselected / 7 skipped / 2822 selected 189s 190s tests/alchemy/test_filters.py ....... 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[100%] 1373s 1373s =============================== warnings summary =============================== 1373s tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/chemenv/utils/math_utils.py:333: RuntimeWarning: divide by zero encountered in scalar divide 1373s return np.where(np.isclose(xx, 0.0), aa * float("inf"), aa * np.power(xx - 1.0, 2) / xx) 1373s 1373s tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/chemenv/utils/math_utils.py:351: RuntimeWarning: divide by zero encountered in scalar divide 1373s aa * np.power(xx - 1.0, 2) / xx**2.0, 1373s 1373s tests/analysis/elasticity/test_elastic.py: 96974 warnings 1373s tests/analysis/elasticity/test_strain.py: 4 warnings 1373s tests/analysis/elasticity/test_stress.py: 8 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 16 warnings 1373s tests/analysis/test_piezo.py: 8 warnings 1373s tests/core/test_tensors.py: 468 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:364: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 48487 warnings 1373s tests/analysis/elasticity/test_strain.py: 2 warnings 1373s tests/analysis/elasticity/test_stress.py: 4 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 8 warnings 1373s tests/analysis/test_piezo.py: 4 warnings 1373s tests/core/test_tensors.py: 234 warnings 1373s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:64: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 5280 warnings 1373s tests/analysis/elasticity/test_strain.py: 129 warnings 1373s tests/analysis/elasticity/test_stress.py: 3 warnings 1373s tests/analysis/interfaces/test_coherent_interface.py: 360 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 1776 warnings 1373s tests/analysis/test_nmr.py: 15 warnings 1373s tests/core/test_tensors.py: 215 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:287: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 14329 warnings 1373s tests/analysis/elasticity/test_strain.py: 363 warnings 1373s tests/analysis/elasticity/test_stress.py: 31 warnings 1373s tests/analysis/interfaces/test_coherent_interface.py: 1272 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 7104 warnings 1373s tests/analysis/test_nmr.py: 10 warnings 1373s tests/analysis/test_piezo.py: 63 warnings 1373s tests/core/test_tensors.py: 10977 warnings 1373s /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2447: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 1788 warnings 1373s tests/analysis/elasticity/test_strain.py: 36 warnings 1373s tests/analysis/elasticity/test_stress.py: 2 warnings 1373s tests/analysis/interfaces/test_coherent_interface.py: 159 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings 1373s tests/analysis/test_piezo.py: 6 warnings 1373s tests/core/test_tensors.py: 1369 warnings 1373s /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2448: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 1793 warnings 1373s tests/analysis/elasticity/test_strain.py: 51 warnings 1373s tests/analysis/elasticity/test_stress.py: 5 warnings 1373s tests/analysis/interfaces/test_coherent_interface.py: 159 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings 1373s tests/analysis/test_nmr.py: 2 warnings 1373s tests/analysis/test_piezo.py: 9 warnings 1373s tests/core/test_tensors.py: 1374 warnings 1373s /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2449: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 1910 warnings 1373s tests/analysis/elasticity/test_strain.py: 108 warnings 1373s tests/analysis/elasticity/test_stress.py: 17 warnings 1373s tests/analysis/interfaces/test_coherent_interface.py: 159 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings 1373s tests/analysis/test_nmr.py: 16 warnings 1373s tests/analysis/test_piezo.py: 18 warnings 1373s tests/core/test_tensors.py: 1629 warnings 1373s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:73: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 52 warnings 1373s tests/analysis/elasticity/test_strain.py: 40 warnings 1373s tests/analysis/interfaces/test_coherent_interface.py: 162 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:196: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 5 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:92: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 5 warnings 1373s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings 1373s tests/core/test_tensors.py: 1 warning 1373s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:52: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 1174 warnings 1373s tests/core/test_tensors.py: 54 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:110: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py::TestElasticTensor::test_from_independent_strains 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/analysis/elasticity/test_elastic.py:228: UserWarning: 1373s 1373s Extra strain states in strain-stress pairs are neglected in independent strain fitting 1373s 1373s tests/analysis/elasticity/test_elastic.py: 12 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:482: UserWarning: 1373s 1373s Tensor is not symmetric, information may be lost in Voigt conversion. 1373s 1373s tests/analysis/elasticity/test_elastic.py: 30 warnings 1373s tests/analysis/elasticity/test_strain.py: 18 warnings 1373s tests/analysis/elasticity/test_stress.py: 4 warnings 1373s tests/analysis/test_nmr.py: 4 warnings 1373s tests/analysis/test_piezo.py: 3 warnings 1373s tests/core/test_tensors.py: 84 warnings 1373s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:760: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 28 warnings 1373s tests/analysis/elasticity/test_strain.py: 4 warnings 1373s tests/analysis/elasticity/test_stress.py: 1 warning 1373s tests/analysis/test_nmr.py: 2 warnings 1373s tests/core/test_tensors.py: 84 warnings 1373s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:761: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 99 warnings 1373s tests/analysis/elasticity/test_strain.py: 57 warnings 1373s tests/analysis/elasticity/test_stress.py: 12 warnings 1373s tests/analysis/test_nmr.py: 12 warnings 1373s tests/analysis/test_piezo.py: 9 warnings 1373s tests/core/test_tensors.py: 255 warnings 1373s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:773: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 58 warnings 1373s tests/analysis/elasticity/test_strain.py: 22 warnings 1373s tests/analysis/elasticity/test_stress.py: 5 warnings 1373s tests/analysis/test_nmr.py: 6 warnings 1373s tests/analysis/test_piezo.py: 3 warnings 1373s tests/core/test_tensors.py: 168 warnings 1373s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:815: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 28 warnings 1373s tests/analysis/elasticity/test_strain.py: 4 warnings 1373s tests/analysis/elasticity/test_stress.py: 1 warning 1373s tests/analysis/test_nmr.py: 2 warnings 1373s tests/core/test_tensors.py: 84 warnings 1373s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:814: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 58 warnings 1373s tests/analysis/elasticity/test_strain.py: 22 warnings 1373s tests/analysis/elasticity/test_stress.py: 5 warnings 1373s tests/analysis/test_nmr.py: 6 warnings 1373s tests/analysis/test_piezo.py: 3 warnings 1373s tests/core/test_tensors.py: 168 warnings 1373s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:818: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 28 warnings 1373s tests/analysis/elasticity/test_strain.py: 4 warnings 1373s tests/analysis/elasticity/test_stress.py: 1 warning 1373s tests/analysis/test_nmr.py: 2 warnings 1373s tests/core/test_tensors.py: 84 warnings 1373s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:817: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 56 warnings 1373s tests/analysis/elasticity/test_strain.py: 8 warnings 1373s tests/analysis/elasticity/test_stress.py: 2 warnings 1373s tests/analysis/test_nmr.py: 4 warnings 1373s tests/core/test_tensors.py: 168 warnings 1373s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:842: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 124 warnings 1373s tests/analysis/elasticity/test_strain.py: 60 warnings 1373s tests/analysis/elasticity/test_stress.py: 13 warnings 1373s tests/analysis/test_nmr.py: 6 warnings 1373s tests/analysis/test_piezo.py: 9 warnings 1373s tests/core/test_tensors.py: 338 warnings 1373s /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2451: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 33 warnings 1373s tests/analysis/elasticity/test_strain.py: 19 warnings 1373s tests/analysis/elasticity/test_stress.py: 4 warnings 1373s tests/analysis/test_nmr.py: 4 warnings 1373s tests/analysis/test_piezo.py: 3 warnings 1373s tests/core/test_tensors.py: 85 warnings 1373s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:851: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 36 warnings 1373s tests/core/test_tensors.py: 8 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:629: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 6912 warnings 1373s tests/core/test_tensors.py: 1536 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:633: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 6912 warnings 1373s tests/core/test_tensors.py: 1536 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:634: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 6912 warnings 1373s tests/core/test_tensors.py: 1536 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:635: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 3456 warnings 1373s tests/core/test_tensors.py: 768 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:636: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 6912 warnings 1373s tests/core/test_tensors.py: 1536 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:637: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 3474 warnings 1373s tests/core/test_tensors.py: 2775 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:327: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 36 warnings 1373s tests/core/test_tensors.py: 8 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:665: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 18 warnings 1373s tests/core/test_tensors.py: 4 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:666: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 11 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:584: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 28 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:742: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_elastic.py: 2 warnings 1373s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings 1373s tests/core/test_tensors.py: 1 warning 1373s /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:1895: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1373s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1373s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1373s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1373s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1373s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:63: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_strain.py: 12 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:253: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:70: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:77: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:89: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:101: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:235: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:237: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/interfaces/test_coherent_interface.py: 78 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings 1373s tests/core/test_tensors.py: 82 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:1021: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/interfaces/test_coherent_interface.py: 78 warnings 1373s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings 1373s tests/core/test_tensors.py: 82 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:992: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_graphs.py: 17 warnings 1373s tests/command_line/test_critic2_caller.py: 5 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/command_line/critic2_caller.py:490: DeprecationWarning: 1373s 1373s Parsing critic2 standard output is deprecated and will not be maintained, please use the native JSON output in the future. 1373s 1373s tests/analysis/test_interface_reactions.py: 24 warnings 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/analysis/test_interface_reactions.py:368: DeprecationWarning: 1373s 1373s Arrays of 2-dimensional vectors are deprecated. Use arrays of 3-dimensional vectors instead. (deprecated in NumPy 2.0) 1373s 1373s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/nmr.py:91: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/nmr.py:104: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/nmr.py:112: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_principal_axis_system 1373s tests/analysis/test_nmr.py::TestElectricFieldGradient::test_principal_axis_system 1373s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:850: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 120 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:385: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 590 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:387: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 120 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:388: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 60 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:396: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 1040 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:393: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 12390 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:568: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 2520 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:571: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 1260 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:581: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 21840 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:578: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 826 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:437: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 168 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:439: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 84 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:449: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 1456 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:446: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 88 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:126: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 88 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:145: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 84 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:243: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_piezo_sensitivity.py: 98 warnings 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:244: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel 1373s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel 1373s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel 1373s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel 1373s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: 1373s 1373s This process (pid=5747) is multi-threaded, use of fork() may lead to deadlocks in the child. 1373s 1373s tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/quasirrho.py:243: RuntimeWarning: 1373s 1373s overflow encountered in exp 1373s 1373s tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure 1373s /usr/lib/python3/dist-packages/pymatgen/analysis/quasirrho.py:244: RuntimeWarning: 1373s 1373s overflow encountered in exp 1373s 1373s tests/core/test_structure.py::TestStructure::test_rotate_sites 1373s /usr/lib/python3/dist-packages/pymatgen/core/structure.py:4699: RuntimeWarning: 1373s 1373s invalid value encountered in divide 1373s 1373s tests/core/test_tensors.py: 18 warnings 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/core/test_tensors.py:207: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1373s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1373s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1373s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1373s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1373s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1373s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1373s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1373s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1373s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:44: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/core/test_tensors.py::TestTensor::test_round 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/core/test_tensors.py:376: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/core/test_tensors.py::TestTensor::test_round 1373s /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:48: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/core/test_tensors.py::TestTensorCollection::test_list_based_functions 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/core/test_tensors.py:409: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/core/test_tensors.py::TestSquareTensor::test_get_scaled 1373s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:1003: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/core/test_tensors.py::TestSquareTensor::test_properties 1373s tests/core/test_tensors.py::TestSquareTensor::test_properties 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/core/test_tensors.py:524: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/core/test_tensors.py::TestSquareTensor::test_refine_rotation 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/core/test_tensors.py:556: DeprecationWarning: 1373s 1373s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1373s 1373s tests/electronic_structure/test_bandstructure.py::TestLobsterBandStructureSymmLine::test_proj_bandstructure_plot 1373s /usr/lib/python3/dist-packages/pymatgen/electronic_structure/plotter.py:1119: RuntimeWarning: 1373s 1373s More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`. 1373s 1373s tests/electronic_structure/test_dos.py::TestFermiDos::test_doping_fermi 1373s /usr/lib/python3/dist-packages/pymatgen/electronic_structure/dos.py:527: RuntimeWarning: 1373s 1373s divide by zero encountered in divide 1373s 1373s tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries 1373s tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries 1373s tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries 1373s /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: 1373s 1373s This process (pid=5747) is multi-threaded, use of fork() may lead to deadlocks in the child. 1373s 1373s tests/io/lammps/test_data.py::TestLammpsData::test_get_str 1373s tests/io/lammps/test_data.py::TestLammpsData::test_write_file 1373s tests/io/lammps/test_data.py::TestLammpsData::test_write_file 1373s tests/io/lammps/test_data.py::TestCombinedData::test_as_lammpsdata 1373s tests/io/lammps/test_data.py::TestCombinedData::test_get_str 1373s /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:57: FutureWarning: 1373s 1373s 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. 1373s 1373s tests/io/test_cif.py::TestCifIO::test_cif_writer_write_file 1373s /usr/lib/python3/dist-packages/pymatgen/io/cif.py:1767: FutureWarning: 1373s 1373s We strongly discourage using implicit binary/text `mode`, and this would not be allowed after 2025-06-01. I.e. you should pass t/b in `mode`. 1373s 1373s tests/io/vasp/test_outputs.py::TestVasprun::test_dfpt_ionic 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/io/vasp/test_outputs.py:366: UnconvergedVASPWarning: 1373s 1373s /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.ionic.xml.gz is an unconverged VASP run. 1373s Electronic convergence reached: True. 1373s Ionic convergence reached: False. 1373s 1373s tests/io/vasp/test_outputs.py::TestVasprun::test_dfpt_unconverged 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/io/vasp/test_outputs.py:373: UnconvergedVASPWarning: 1373s 1373s /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.unconverged.xml.gz is an unconverged VASP run. 1373s Electronic convergence reached: False. 1373s Ionic convergence reached: True. 1373s 1373s tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/io/vasp/test_outputs.py:159: UnconvergedVASPWarning: 1373s 1373s /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.hse06.xml.gz is an unconverged VASP run. 1373s Electronic convergence reached: False. 1373s Ionic convergence reached: True. 1373s 1373s tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/io/vasp/test_outputs.py:165: UnconvergedVASPWarning: 1373s 1373s /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.ionic.xml.gz is an unconverged VASP run. 1373s Electronic convergence reached: True. 1373s Ionic convergence reached: False. 1373s 1373s tests/io/vasp/test_outputs.py::TestVasprun::test_standard 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/io/vasp/test_outputs.py:238: RuntimeWarning: 1373s 1373s invalid value encountered in divide 1373s 1373s tests/io/vasp/test_outputs.py::TestVasprun::test_standard 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/io/vasp/test_outputs.py:243: RuntimeWarning: 1373s 1373s invalid value encountered in divide 1373s 1373s tests/io/vasp/test_outputs.py::TestVasprun::test_standard 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/io/vasp/test_outputs.py:248: RuntimeWarning: 1373s 1373s invalid value encountered in divide 1373s 1373s tests/io/vasp/test_outputs.py::TestVasprun::test_standard 1373s /tmp/autopkgtest.JaIr91/build.wJx/src/tests/io/vasp/test_outputs.py:256: RuntimeWarning: 1373s 1373s invalid value encountered in divide 1373s 1373s tests/io/vasp/test_outputs.py::TestWavecar::test_standard 1373s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:5008: RuntimeWarning: 1373s 1373s invalid value encountered in cast 1373s 1373s tests/phonon/test_plotter.py::TestPhononBSPlotter::test_proj_plot 1373s /usr/lib/python3/dist-packages/pymatgen/phonon/plotter.py:514: RuntimeWarning: 1373s 1373s More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`. 1373s 1373s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1373s ============================= slowest 30 durations ============================= 1373s 54.73s call tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell 1373s 31.58s call tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods 1373s 25.24s call tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10 1373s 24.03s call tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation 1373s 19.68s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot 1373s 18.25s call tests/io/vasp/test_optics.py::TestVasprun::test_optics 1373s 18.09s call tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress 1373s 15.42s call tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number 1373s 15.16s call tests/ext/test_optimade.py::TestOptimade::test_update_aliases 1373s 14.86s call tests/core/test_surface.py::TestSlab::test_symmetrization 1373s 14.66s call tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab 1373s 13.92s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict 1373s 13.84s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack 1373s 13.68s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy 1373s 13.25s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies 1373s 13.15s call tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter 1373s 13.12s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen 1373s 13.08s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi 1373s 13.04s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos 1373s 12.93s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp 1373s 12.64s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen 1373s 12.44s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos 1373s 11.47s call tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 1373s 10.79s call tests/io/test_packmol.py::TestPackmolSet::test_chdir_behavior 1373s 10.65s call tests/io/lobster/test_lobsterenv.py::TestLobsterNeighbors::test_get_info_cohps_to_neighbors 1373s 10.51s call tests/analysis/topological/test_spillage.py::TestSolar::test_spillage_from_vasprun 1373s 9.77s call tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation 1373s 9.45s call tests/io/vasp/test_outputs.py::TestVasprun::test_vasprun_soc 1373s 9.36s call tests/io/qchem/test_outputs.py::TestQCOutput::test_nbo7_infinite_e2pert 1373s 9.34s call tests/io/qchem/test_outputs.py::TestQCOutput::test_nbo_hyperbonds 1373s =========================== short test summary info ============================ 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 1373s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down 1373s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' 1373s SKIPPED [1] tests/io/test_shengbte.py:10: could not import 'f90nml': No module named 'f90nml' 1373s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed 1373s SKIPPED [1] tests/performance/test_import_time.py:32: ref time only comparable in CI runner 1373s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed 1373s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:174: TODO: need someone to fix this 1373s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:169: TODO: need someone to fix this 1373s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:264: enumlib not present 1373s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:300: enumlib not present 1373s SKIPPED [1] tests/analysis/test_graphs.py:351: graphviz executables not present 1373s SKIPPED [1] tests/analysis/test_graphs.py:243: Need someone to fix this, see issue 4206 1373s SKIPPED [1] tests/analysis/test_local_env.py:1367: critic2 executable not present 1373s SKIPPED [1] tests/analysis/test_molecule_structure_comparator.py:144: TODO: need someone to fix this 1373s SKIPPED [1] tests/analysis/test_surface_analysis.py:263: TODO: need someone to fix this 1373s SKIPPED [1] tests/analysis/test_surface_analysis.py:270: TODO: need someone to fix this 1373s SKIPPED [1] tests/analysis/test_surface_analysis.py:278: TODO: need someone to fix this 1373s SKIPPED [1] tests/analysis/test_surface_analysis.py:256: TODO: need someone to fix this 1373s SKIPPED [1] tests/analysis/test_surface_analysis.py:286: TODO: need someone to fix this 1373s SKIPPED [1] tests/command_line/test_bader_caller.py:119: bader executable not present 1373s SKIPPED [1] tests/command_line/test_bader_caller.py:84: bader executable not present 1373s SKIPPED [1] tests/command_line/test_bader_caller.py:66: bader executable not present 1373s SKIPPED [1] tests/command_line/test_bader_caller.py:136: bader executable not present 1373s SKIPPED [1] tests/command_line/test_critic2_caller.py:26: critic2 executable not present 1373s SKIPPED [1] tests/command_line/test_critic2_caller.py:62: critic2 executable not present 1373s SKIPPED [1] tests/command_line/test_enumlib_caller.py:93: enum_lib not present. 1373s SKIPPED [1] tests/command_line/test_enumlib_caller.py:81: enum_lib not present. 1373s SKIPPED [1] tests/command_line/test_enumlib_caller.py:123: enum_lib not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:41: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:74: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:181: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:148: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:236: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:272: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:114: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:139: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:144: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:135: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:120: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:130: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:126: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:283: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:212: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:320: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:332: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:315: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:356: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:345: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:352: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:363: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:359: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:383: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:373: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:379: gulp not present. 1373s SKIPPED [1] tests/command_line/test_gulp_caller.py:386: gulp not present. 1373s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:67: mcsqs executable not present 1373s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:101: mcsqs executable not present 1373s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present 1373s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:51: mcsqs executable not present 1373s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:59: mcsqs executable not present 1373s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:77: mcsqs executable not present 1373s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:89: mcsqs executable not present 1373s SKIPPED [1] tests/command_line/test_vampire_caller.py:34: vampire executable not present 1373s SKIPPED [1] tests/core/test_structure.py:714: Only run this in CI tests 1373s SKIPPED [1] tests/core/test_structure.py:107: enumlib or mcsqs executable not present 1373s SKIPPED [1] tests/core/test_structure.py:988: could not import 'moyopy': No module named 'moyopy' 1373s SKIPPED [1] tests/core/test_structure.py:1931: chgnet is not built against NumPy 2.0 1373s SKIPPED [1] tests/core/test_structure.py:2003: TODO: #3958 wait for matgl resolve of torch dependency 1373s SKIPPED [1] tests/core/test_structure.py:1021: PMG_MAPI_KEY environment variable not set or MP API is down. This is also the case in a PR. 1373s SKIPPED [1] tests/core/test_structure.py:1906: chgnet is not built against NumPy 2.0 1373s SKIPPED [1] tests/core/test_structure.py:2015: TODO: #3958 wait for matgl resolve of torch dependency 1373s SKIPPED [1] tests/core/test_structure.py:2026: TODO: #3958 wait for matgl resolve of torch dependency 1373s SKIPPED [1] tests/core/test_structure.py:2035: TODO: #3958 wait for matgl resolve of torch dependency 1373s SKIPPED [1] tests/core/test_structure.py:2668: could not import 'tblite': No module named 'tblite' 1373s SKIPPED [1] tests/core/test_structure.py:2676: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060 1373s SKIPPED [1] tests/core/test_surface.py:700: This test relies on neighbor orders and is hard coded. Disable temporarily 1373s SKIPPED [1] tests/core/test_xcfunc.py:56: TODO: 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:254: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:221: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:241: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:169: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:199: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:232: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:101: No FDINT 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:123: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:203: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:132: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:116: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:86: No FDINT 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:207: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:141: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:157: No x_trans. 1373s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:43: No x_trans. 1373s SKIPPED [19] tests/electronic_structure/test_plotter.py: No x_trans executable found 1373s SKIPPED [1] tests/io/exciting/test_inputs.py:137: inconsistent data 1373s SKIPPED [1] tests/io/test_cif.py:322: non-free PF*.cif test files are not available 1373s SKIPPED [1] tests/io/test_jarvis.py:12: JARVIS-tools not loaded. 1373s SKIPPED [1] tests/io/test_jarvis.py:20: JARVIS-tools not loaded. 1373s SKIPPED [1] tests/io/vasp/test_inputs.py:1717: TODO: need someone to fix this 1373s SKIPPED [1] tests/symmetry/test_kpaths.py:21: No seek path present. 1373s SKIPPED [1] tests/test_pkg.py:11: SRC_TXT_PATH='src/pymatgen.egg-info/SOURCES.txt' not found. Run `pip install .` to create 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:97: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:158: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:188: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:207: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:237: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:249: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:364: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:304: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:342: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:334: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:352: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:492: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:540: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:549: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:607: mcsqs not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:617: mcsqs not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:638: mcsqs not present. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:670: icet not installed. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:656: icet not installed. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:681: icet not installed. 1373s SKIPPED [1] tests/transformations/test_advanced_transformations.py:874: hiphive not present 1373s SKIPPED [1] tests/transformations/test_site_transformations.py:214: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_standard_transformations.py:238: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_standard_transformations.py:255: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_standard_transformations.py:273: enum_lib not present. 1373s SKIPPED [1] tests/transformations/test_standard_transformations.py:279: enum_lib not present. 1373s = 2683 passed, 146 skipped, 295 deselected, 296918 warnings in 1205.06s (0:20:05) = 1373s ..tot conformations = 3 1373s ..tot confs tested = 3 1373s ..below energy threshold = 3 1379s autopkgtest [10:48:17]: test test-pymatgen: -----------------------] 1380s test-pymatgen PASS 1380s autopkgtest [10:48:18]: test test-pymatgen: - - - - - - - - - - results - - - - - - - - - - 1380s autopkgtest [10:48:18]: test test-pymatgen-net: preparing testbed 1455s autopkgtest [10:49:33]: testbed dpkg architecture: arm64 1455s autopkgtest [10:49:33]: testbed apt version: 3.0.0 1456s autopkgtest [10:49:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1456s autopkgtest [10:49:34]: testbed release detected to be: questing 1457s autopkgtest [10:49:35]: updating testbed package index (apt update) 1457s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 1457s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 1457s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 1457s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 1457s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB] 1457s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB] 1457s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 1457s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [219 kB] 1457s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1509 kB] 1457s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 1458s Fetched 4149 kB in 1s (5286 kB/s) 1458s Reading package lists... 1459s autopkgtest [10:49:37]: upgrading testbed (apt dist-upgrade and autopurge) 1459s Reading package lists... 1459s Building dependency tree... 1459s Reading state information... 1460s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 1460s Starting 2 pkgProblemResolver with broken count: 0 1460s Done 1460s Entering ResolveByKeep 1461s 1461s Calculating upgrade... 1461s The following packages will be upgraded: 1461s htop libperl5.40 mtd-utils nano perl perl-base perl-modules-5.40 1461s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1461s Need to get 11.0 MB of archives. 1461s After this operation, 727 kB of additional disk space will be used. 1461s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libperl5.40 arm64 5.40.1-3 [4780 kB] 1461s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl arm64 5.40.1-3 [262 kB] 1461s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-base arm64 5.40.1-3 [1786 kB] 1462s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 1462s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 1462s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 1462s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 1462s Fetched 11.0 MB in 1s (18.6 MB/s) 1462s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 1462s Preparing to unpack .../libperl5.40_5.40.1-3_arm64.deb ... 1462s Unpacking libperl5.40:arm64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 1462s Preparing to unpack .../perl_5.40.1-3_arm64.deb ... 1462s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 1463s Preparing to unpack .../perl-base_5.40.1-3_arm64.deb ... 1463s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 1463s Setting up perl-base (5.40.1-3) ... 1463s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85224 files and directories currently installed.) 1463s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 1463s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 1463s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 1463s Unpacking nano (8.4-1) over (8.3-1) ... 1463s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 1463s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 1463s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 1463s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 1463s Setting up htop (3.4.1-4) ... 1463s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 1463s Setting up nano (8.4-1) ... 1463s Installing new version of config file /etc/nanorc ... 1463s Setting up perl-modules-5.40 (5.40.1-3) ... 1463s Setting up libperl5.40:arm64 (5.40.1-3) ... 1463s Setting up perl (5.40.1-3) ... 1463s Processing triggers for libc-bin (2.41-6ubuntu1) ... 1463s Processing triggers for man-db (2.13.0-1) ... 1464s Processing triggers for install-info (7.1.1-1) ... 1465s Reading package lists... 1465s Building dependency tree... 1465s Reading state information... 1465s Starting pkgProblemResolver with broken count: 0 1465s Starting 2 pkgProblemResolver with broken count: 0 1465s Done 1466s Solving dependencies... 1466s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1468s Reading package lists... 1469s Building dependency tree... 1469s Reading state information... 1469s Starting pkgProblemResolver with broken count: 0 1469s Starting 2 pkgProblemResolver with broken count: 0 1469s Done 1470s The following NEW packages will be installed: 1470s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 1470s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit 1470s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 1470s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1470s fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx 1470s fonts-mathjax g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 1470s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext 1470s intltool-debian libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl 1470s libasan8 libblas3 libboost-iostreams1.83.0 libcairo2 libcc1-0 1470s libdebhelper-perl libdeflate0 libdouble-conversion3 libegl-mesa0 libegl1 1470s libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 1470s libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev 1470s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 1470s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 1470s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins 1470s libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 libinchi1.07 1470s libinput-bin libinput10 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 1470s libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc 1470s libjs-underscore libjson-perl libjsoncpp26 liblapack3 liblbfgsb0 liblcms2-2 1470s liblerc4 libllvm17t64 liblsan0 liblzf1 libmaeparser1 libmd4c0 libmpc3 1470s libmtdev1t64 libmunge2 libnetcdf22 libogg0 libopenbabel7 libopengl0 1470s libopenjp2-7 libopenmpi40 libpciaccess0 libpcre2-16-0 libpixman-1-0 1470s libpmix2t64 libproj25 libpython3-all-dev libpython3-dev libpython3.13-dev 1470s libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 1470s libqt5widgets5t64 libraqm0 librdmacm1t64 libsharpyuv0 libsm6 1470s libstdc++-14-dev libsymspg2 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 1470s libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libtool libtsan2 1470s libubsan1 libucx0 libvtk9.3 libvtk9.3-qt libvulkan1 libwacom-common 1470s libwacom9 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 1470s libwebpmux3 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 1470s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 1470s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 1470s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 1470s libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1 1470s libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin ocl-icd-libopencl1 1470s openmpi-bin openmpi-common packmol po-debconf proj-data 1470s pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data 1470s python-pymatgen-doc python3-alabaster python3-all python3-all-dev 1470s python3-annotated-types python3-ase python3-brotli python3-bs4 python3-bson 1470s python3-build python3-cftime python3-contourpy python3-cycler 1470s python3-decorator python3-defusedxml python3-dev python3-dnspython 1470s python3-docutils python3-email-validator python3-fastjsonschema 1470s python3-fonttools python3-frozendict python3-fs python3-h5py 1470s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 1470s python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec 1470s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpi4py 1470s python3-mpmath python3-nbformat python3-netcdf4 python3-networkx 1470s python3-numpy python3-numpy-dev python3-openbabel python3-palettable 1470s python3-pandas python3-pandas-lib python3-phonopy python3-pil 1470s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 1470s python3-pybtex python3-pydantic python3-pydantic-core python3-pymatgen 1470s python3-pyproject-hooks python3-pytest python3-pytz python3-roman 1470s python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy 1470s python3-snowballstemmer python3-soupsieve python3-spglib python3-sphinx 1470s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 1470s python3-tabulate python3-tenacity python3-tk python3-toml python3-tqdm 1470s python3-traitlets python3-tz python3-ufolib2 python3-uncertainties 1470s python3-unicodedata2 python3-vtk9 python3-wheel python3.13-dev python3.13-tk 1470s sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data 1470s x11-common xml-core zlib1g-dev 1470s 0 upgraded, 288 newly installed, 0 to remove and 0 not upgraded. 1470s Need to get 531 MB of archives. 1470s After this operation, 2036 MB of additional disk space will be used. 1470s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-lato all 2.015-1 [2781 kB] 1470s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 1470s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 1470s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 1470s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 1470s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 1470s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 sgml-base all 1.31 [11.4 kB] 1470s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 m4 arm64 1.4.19-7 [244 kB] 1470s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 autoconf all 2.72-3ubuntu1 [383 kB] 1470s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 autotools-dev all 20220109.1 [44.9 kB] 1470s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 automake all 1:1.17-3ubuntu1 [572 kB] 1470s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 autopoint all 0.23.1-1 [619 kB] 1470s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 1470s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 1470s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 1470s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 1470s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 1470s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 1470s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 1470s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 1470s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 1471s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 1471s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 1471s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 1471s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB] 1471s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 1471s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [10.6 MB] 1471s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14 arm64 14.2.0-19ubuntu2 [1026 B] 1471s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 1471s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 1471s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 libcc1-0 arm64 15-20250404-0ubuntu1 [49.1 kB] 1471s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 1471s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libitm1 arm64 15-20250404-0ubuntu1 [27.8 kB] 1471s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libasan8 arm64 15-20250404-0ubuntu1 [2922 kB] 1471s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 liblsan0 arm64 15-20250404-0ubuntu1 [1318 kB] 1471s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libtsan2 arm64 15-20250404-0ubuntu1 [2692 kB] 1471s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libubsan1 arm64 15-20250404-0ubuntu1 [1177 kB] 1471s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libhwasan0 arm64 15-20250404-0ubuntu1 [1640 kB] 1471s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libgcc-14-dev arm64 14.2.0-19ubuntu2 [2593 kB] 1472s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [20.9 MB] 1472s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14 arm64 14.2.0-19ubuntu2 [529 kB] 1472s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 1472s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 1472s Get:44 http://ftpmaster.internal/ubuntu questing/main arm64 libstdc++-14-dev arm64 14.2.0-19ubuntu2 [2501 kB] 1472s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [12.1 MB] 1472s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 g++-14 arm64 14.2.0-19ubuntu2 [23.0 kB] 1472s Get:47 http://ftpmaster.internal/ubuntu questing/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 1472s Get:48 http://ftpmaster.internal/ubuntu questing/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 1472s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 build-essential arm64 12.12ubuntu1 [5082 B] 1472s Get:50 http://ftpmaster.internal/ubuntu questing/universe arm64 cython3 arm64 3.0.11+dfsg-2ubuntu2 [2436 kB] 1472s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 1472s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libtool all 2.5.4-4 [168 kB] 1472s Get:53 http://ftpmaster.internal/ubuntu questing/main arm64 dh-autoreconf all 20 [16.1 kB] 1472s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 1472s Get:55 http://ftpmaster.internal/ubuntu questing/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 1472s Get:56 http://ftpmaster.internal/ubuntu questing/main arm64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 1472s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 debugedit arm64 1:5.1-2 [46.1 kB] 1472s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 dwz arm64 0.15-1build6 [113 kB] 1472s Get:59 http://ftpmaster.internal/ubuntu questing/main arm64 gettext arm64 0.23.1-1 [998 kB] 1472s Get:60 http://ftpmaster.internal/ubuntu questing/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 1472s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 1472s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 debhelper all 13.24.1ubuntu2 [895 kB] 1472s Get:63 http://ftpmaster.internal/ubuntu questing/universe arm64 dh-python all 6.20250308 [118 kB] 1472s Get:64 http://ftpmaster.internal/ubuntu questing/main arm64 xml-core all 0.19 [20.3 kB] 1472s Get:65 http://ftpmaster.internal/ubuntu questing/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 1472s Get:66 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig arm64 2.15.0-2.2ubuntu1 [191 kB] 1472s Get:67 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1472s Get:68 http://ftpmaster.internal/ubuntu questing/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1472s Get:69 http://ftpmaster.internal/ubuntu questing/universe arm64 fonts-lyx all 2.4.3-1 [171 kB] 1472s Get:70 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1472s Get:71 http://ftpmaster.internal/ubuntu questing/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 1472s Get:72 http://ftpmaster.internal/ubuntu questing/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 1473s Get:73 http://ftpmaster.internal/ubuntu questing/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 1473s Get:74 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 1473s Get:75 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 1473s Get:76 http://ftpmaster.internal/ubuntu questing/universe arm64 libamdhip64-5 arm64 5.7.1-5build1 [9707 kB] 1473s Get:77 http://ftpmaster.internal/ubuntu questing/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-4.2ubuntu1 [259 kB] 1473s Get:78 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 1473s Get:79 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 1473s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 1473s Get:81 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 1473s Get:82 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 1473s Get:83 http://ftpmaster.internal/ubuntu questing/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 1473s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 1473s Get:85 http://ftpmaster.internal/ubuntu questing/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 1473s Get:86 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 1473s Get:87 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 1473s Get:88 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 1473s Get:89 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 1473s Get:90 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 1473s Get:91 http://ftpmaster.internal/ubuntu questing/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 1473s Get:92 http://ftpmaster.internal/ubuntu questing/main arm64 mesa-libgallium arm64 25.0.3-1ubuntu2 [9455 kB] 1473s Get:93 http://ftpmaster.internal/ubuntu questing/main arm64 libgbm1 arm64 25.0.3-1ubuntu2 [33.7 kB] 1473s Get:94 http://ftpmaster.internal/ubuntu questing/main arm64 libwayland-client0 arm64 1.23.1-3 [27.0 kB] 1473s Get:95 http://ftpmaster.internal/ubuntu questing/main arm64 libegl-mesa0 arm64 25.0.3-1ubuntu2 [122 kB] 1473s Get:96 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 1473s Get:97 http://ftpmaster.internal/ubuntu questing/main arm64 libexpat1-dev arm64 2.7.1-1 [128 kB] 1473s Get:98 http://ftpmaster.internal/ubuntu questing/main arm64 librdmacm1t64 arm64 56.0-4ubuntu1 [71.4 kB] 1473s Get:99 http://ftpmaster.internal/ubuntu questing/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 1473s Get:100 http://ftpmaster.internal/ubuntu questing/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 1473s Get:101 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1-mesa-dri arm64 25.0.3-1ubuntu2 [35.4 kB] 1473s Get:102 http://ftpmaster.internal/ubuntu questing/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 1473s Get:103 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 1473s Get:104 http://ftpmaster.internal/ubuntu questing/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 1473s Get:105 http://ftpmaster.internal/ubuntu questing/main arm64 libglx-mesa0 arm64 25.0.3-1ubuntu2 [151 kB] 1473s Get:106 http://ftpmaster.internal/ubuntu questing/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 1473s Get:107 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 1473s Get:108 http://ftpmaster.internal/ubuntu questing/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 1473s Get:109 http://ftpmaster.internal/ubuntu questing/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 1473s Get:110 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 1473s Get:111 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 1473s Get:112 http://ftpmaster.internal/ubuntu questing/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 1473s Get:113 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 1473s Get:114 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 1473s Get:115 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 1473s Get:116 http://ftpmaster.internal/ubuntu questing/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 1473s Get:117 http://ftpmaster.internal/ubuntu questing/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 1473s Get:118 http://ftpmaster.internal/ubuntu questing/universe arm64 libinchi1.07 arm64 1.07.3+dfsg-1 [573 kB] 1473s Get:119 http://ftpmaster.internal/ubuntu questing/main arm64 libwacom-common all 2.14.0-1 [103 kB] 1473s Get:120 http://ftpmaster.internal/ubuntu questing/main arm64 libwacom9 arm64 2.14.0-1 [26.7 kB] 1473s Get:121 http://ftpmaster.internal/ubuntu questing/main arm64 libinput-bin arm64 1.27.1-1 [23.5 kB] 1473s Get:122 http://ftpmaster.internal/ubuntu questing/main arm64 libmtdev1t64 arm64 1.1.7-1 [14.6 kB] 1473s Get:123 http://ftpmaster.internal/ubuntu questing/main arm64 libinput10 arm64 1.27.1-1 [136 kB] 1473s Get:124 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 1473s Get:125 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 1473s Get:126 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1473s Get:127 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1473s Get:128 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1473s Get:129 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 1473s Get:130 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 1473s Get:131 http://ftpmaster.internal/ubuntu questing/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 1473s Get:132 http://ftpmaster.internal/ubuntu questing/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 1473s Get:133 http://ftpmaster.internal/ubuntu questing/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 1473s Get:134 http://ftpmaster.internal/ubuntu questing/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 1473s Get:135 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 1473s Get:136 http://ftpmaster.internal/ubuntu questing/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 1473s Get:137 http://ftpmaster.internal/ubuntu questing/universe arm64 libmaeparser1 arm64 1.3.1-1build1 [84.5 kB] 1473s Get:138 http://ftpmaster.internal/ubuntu questing/universe arm64 libmd4c0 arm64 0.5.2-2 [42.4 kB] 1473s Get:139 http://ftpmaster.internal/ubuntu questing/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 1473s Get:140 http://ftpmaster.internal/ubuntu questing/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 1473s Get:141 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenbabel7 arm64 3.1.1+dfsg-11ubuntu3 [3183 kB] 1473s Get:142 http://ftpmaster.internal/ubuntu questing/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 1473s Get:143 http://ftpmaster.internal/ubuntu questing/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 1473s Get:144 http://ftpmaster.internal/ubuntu questing/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 1473s Get:145 http://ftpmaster.internal/ubuntu questing/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 1473s Get:146 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 1473s Get:147 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 1473s Get:148 http://ftpmaster.internal/ubuntu questing/main arm64 libibumad3 arm64 56.0-4ubuntu1 [31.3 kB] 1473s Get:149 http://ftpmaster.internal/ubuntu questing/main arm64 libibmad5 arm64 56.0-4ubuntu1 [44.1 kB] 1474s Get:150 http://ftpmaster.internal/ubuntu questing/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 1474s Get:151 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 1474s Get:152 http://ftpmaster.internal/ubuntu questing/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 1474s Get:153 http://ftpmaster.internal/ubuntu questing/universe arm64 proj-data all 9.5.1-1 [7924 kB] 1474s Get:154 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 1474s Get:155 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 1474s Get:156 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 1474s Get:157 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 1474s Get:158 http://ftpmaster.internal/ubuntu questing/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 1474s Get:159 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 1474s Get:160 http://ftpmaster.internal/ubuntu questing/main arm64 libpython3.13-dev arm64 3.13.3-1 [5405 kB] 1474s Get:161 http://ftpmaster.internal/ubuntu questing/main arm64 libpython3-dev arm64 3.13.3-1 [10.8 kB] 1474s Get:162 http://ftpmaster.internal/ubuntu questing/main arm64 libpython3-all-dev arm64 3.13.3-1 [906 B] 1474s Get:163 http://ftpmaster.internal/ubuntu questing/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 1474s Get:164 http://ftpmaster.internal/ubuntu questing/universe arm64 libqt5core5t64 arm64 5.15.15+dfsg-4ubuntu1 [1999 kB] 1474s Get:165 http://ftpmaster.internal/ubuntu questing/universe arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-4ubuntu1 [222 kB] 1474s Get:166 http://ftpmaster.internal/ubuntu questing/main arm64 libegl1 arm64 1.7.0-1build1 [29.5 kB] 1474s Get:167 http://ftpmaster.internal/ubuntu questing/universe arm64 libqt5network5t64 arm64 5.15.15+dfsg-4ubuntu1 [735 kB] 1474s Get:168 http://ftpmaster.internal/ubuntu questing/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 1474s Get:169 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-icccm4 arm64 0.4.2-1 [10.9 kB] 1474s Get:170 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-util1 arm64 0.4.1-1 [10.9 kB] 1474s Get:171 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-image0 arm64 0.4.0-2build1 [10.8 kB] 1474s Get:172 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-keysyms1 arm64 0.4.1-1 [8802 B] 1474s Get:173 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render-util0 arm64 0.3.10-1 [10.5 kB] 1474s Get:174 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shape0 arm64 1.17.0-2 [6246 B] 1474s Get:175 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [5590 B] 1474s Get:176 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xinput0 arm64 1.17.0-2 [34.2 kB] 1474s Get:177 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xkb1 arm64 1.17.0-2 [32.5 kB] 1474s Get:178 http://ftpmaster.internal/ubuntu questing/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2 [13.8 kB] 1474s Get:179 http://ftpmaster.internal/ubuntu questing/universe arm64 libqt5gui5t64 arm64 5.15.15+dfsg-4ubuntu1 [3680 kB] 1474s Get:180 http://ftpmaster.internal/ubuntu questing/universe arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-4ubuntu1 [2568 kB] 1474s Get:181 http://ftpmaster.internal/ubuntu questing/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 1474s Get:182 http://ftpmaster.internal/ubuntu questing/universe arm64 libsymspg2 arm64 2.5.0-2build1 [210 kB] 1474s Get:183 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 1474s Get:184 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 1474s Get:185 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 1474s Get:186 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 1474s Get:187 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 1474s Get:188 http://ftpmaster.internal/ubuntu questing/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 1474s Get:189 http://ftpmaster.internal/ubuntu questing/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu1 [24.0 MB] 1475s Get:190 http://ftpmaster.internal/ubuntu questing/universe arm64 libvtk9.3-qt arm64 9.3.0+dfsg1-4ubuntu1 [183 kB] 1475s Get:191 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 1475s Get:192 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 1475s Get:193 http://ftpmaster.internal/ubuntu questing/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu4 [168 kB] 1475s Get:194 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 1475s Get:195 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 1475s Get:196 http://ftpmaster.internal/ubuntu questing/universe arm64 packmol arm64 1:20.15.3-1 [118 kB] 1475s Get:197 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 1475s Get:198 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-toml all 0.10.2-1 [16.5 kB] 1475s Get:199 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-wheel all 0.45.1-1 [57.7 kB] 1475s Get:200 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-build all 1.2.2-1 [31.0 kB] 1475s Get:201 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 1475s Get:202 http://ftpmaster.internal/ubuntu questing/universe arm64 pybuild-plugin-pyproject all 6.20250308 [1726 B] 1475s Get:203 http://ftpmaster.internal/ubuntu questing/universe arm64 pymatgen-test-files all 2025.2.18-1 [214 MB] 1479s Get:204 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 python-matplotlib-data all 3.10.1+dfsg1-3 [2936 kB] 1479s Get:205 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1479s Get:206 http://ftpmaster.internal/ubuntu questing/main arm64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 1479s Get:207 http://ftpmaster.internal/ubuntu questing/universe arm64 python-pymatgen-doc all 2025.2.18+dfsg1-4 [1186 kB] 1479s Get:208 http://ftpmaster.internal/ubuntu questing/main arm64 python3-all arm64 3.13.3-1 [880 B] 1479s Get:209 http://ftpmaster.internal/ubuntu questing/main arm64 python3.13-dev arm64 3.13.3-1 [508 kB] 1479s Get:210 http://ftpmaster.internal/ubuntu questing/main arm64 python3-dev arm64 3.13.3-1 [26.7 kB] 1479s Get:211 http://ftpmaster.internal/ubuntu questing/main arm64 python3-all-dev arm64 3.13.3-1 [904 B] 1479s Get:212 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-annotated-types all 0.7.0-1 [19.4 kB] 1479s Get:213 http://ftpmaster.internal/ubuntu questing/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 1479s Get:214 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB] 1479s Get:215 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-spglib arm64 2.5.0-2build1 [31.1 kB] 1479s Get:216 http://ftpmaster.internal/ubuntu questing/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 1479s Get:217 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 1479s Get:218 http://ftpmaster.internal/ubuntu questing/main arm64 python3.13-tk arm64 3.13.3-1 [106 kB] 1479s Get:219 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tk arm64 3.13.3-1 [9856 B] 1479s Get:220 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pil.imagetk arm64 11.1.0-5build1 [9892 B] 1479s Get:221 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-contourpy arm64 1.3.1-1build1 [182 kB] 1479s Get:222 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 1479s Get:223 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-brotli arm64 1.1.0-2build4 [342 kB] 1479s Get:224 http://ftpmaster.internal/ubuntu questing/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 1479s Get:225 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 1479s Get:226 http://ftpmaster.internal/ubuntu questing/main arm64 python3-lxml arm64 5.3.2-1 [1258 kB] 1479s Get:227 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1build1 [27.1 kB] 1479s Get:228 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 1479s Get:229 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 1479s Get:230 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 1479s Get:231 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-unicodedata2 arm64 15.1.0+ds-1build3 [360 kB] 1479s Get:232 http://ftpmaster.internal/ubuntu questing/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 1479s Get:233 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-fonttools arm64 4.55.3-2build1 [1466 kB] 1479s Get:234 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-kiwisolver arm64 1.4.7-3build1 [50.7 kB] 1479s Get:235 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 python3-matplotlib arm64 3.10.1+dfsg1-3 [18.0 MB] 1480s Get:236 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-ase all 3.24.0-1 [1787 kB] 1480s Get:237 http://ftpmaster.internal/ubuntu questing/main arm64 python3-soupsieve all 2.6-1 [33.0 kB] 1480s Get:238 http://ftpmaster.internal/ubuntu questing/main arm64 python3-bs4 all 4.13.3-2 [136 kB] 1480s Get:239 http://ftpmaster.internal/ubuntu questing/main arm64 python3-bson all 4.10.1-5build1 [42.9 kB] 1480s Get:240 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-cftime arm64 1.6.4-2 [208 kB] 1480s Get:241 http://ftpmaster.internal/ubuntu questing/main arm64 python3-defusedxml all 0.7.1-3 [42.2 kB] 1480s Get:242 http://ftpmaster.internal/ubuntu questing/main arm64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB] 1480s Get:243 http://ftpmaster.internal/ubuntu questing/main arm64 python3-roman all 5.0-1 [10.3 kB] 1480s Get:244 http://ftpmaster.internal/ubuntu questing/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 1480s Get:245 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-email-validator all 2.2.0-1 [28.5 kB] 1480s Get:246 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 1480s Get:247 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-frozendict all 2.4.6-1 [13.2 kB] 1480s Get:248 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-h5py-serial arm64 3.13.0-1 [1126 kB] 1480s Get:249 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-h5py all 3.13.0-1 [7978 B] 1480s Get:250 http://ftpmaster.internal/ubuntu questing/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 1480s Get:251 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 1480s Get:252 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-joblib all 1.4.2-3 [205 kB] 1480s Get:253 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 1480s Get:254 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 1480s Get:255 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-latexcodec all 3.0.0-1 [16.6 kB] 1480s Get:256 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pytz all 2025.1-3 [162 kB] 1480s Get:257 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tz all 2025.1-3 [1866 B] 1480s Get:258 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-8build1 [4586 kB] 1480s Get:259 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 1480s Get:260 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pydantic-core arm64 2.27.2-1build1 [1489 kB] 1480s Get:261 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pydantic arm64 2.10.6-1 [288 kB] 1480s Get:262 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-tqdm all 4.67.1-3 [91.6 kB] 1480s Get:263 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-ruamel.yaml.clib arm64 0.2.12+ds-1build1 [138 kB] 1480s Get:264 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 1480s Get:265 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-monty all 2025.3.3-1 [40.4 kB] 1480s Get:266 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-nbformat all 5.9.1-1 [41.2 kB] 1480s Get:267 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-netcdf4 arm64 1.7.2-1build4 [587 kB] 1480s Get:268 http://ftpmaster.internal/ubuntu questing/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 1480s Get:269 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-openbabel arm64 3.1.1+dfsg-11ubuntu3 [607 kB] 1480s Get:270 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-palettable all 3.3.3-1 [81.3 kB] 1480s Get:271 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-phonopy arm64 2.35.0-1 [321 kB] 1480s Get:272 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 1480s Get:273 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 1481s Get:274 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 1481s Get:275 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pybtex all 0.24.0-4 [70.0 kB] 1481s Get:276 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tabulate all 0.9.0-1 [45.3 kB] 1481s Get:277 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-uncertainties all 3.2.2-1 [51.4 kB] 1481s Get:278 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pymatgen arm64 2025.2.18+dfsg1-4 [2623 kB] 1481s Get:279 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pytest all 8.3.5-1 [252 kB] 1481s Get:280 http://ftpmaster.internal/ubuntu questing/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 1481s Get:281 http://ftpmaster.internal/ubuntu questing/main arm64 sphinx-common all 8.1.3-5 [663 kB] 1481s Get:282 http://ftpmaster.internal/ubuntu questing/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 1481s Get:283 http://ftpmaster.internal/ubuntu questing/main arm64 python3-sphinx all 8.1.3-5 [474 kB] 1481s Get:284 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 1481s Get:285 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB] 1481s Get:286 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 1481s Get:287 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-mpi4py arm64 4.0.3-3ubuntu1 [730 kB] 1481s Get:288 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-vtk9 arm64 9.3.0+dfsg1-4ubuntu1 [7918 kB] 1482s Fetched 531 MB in 12s (45.5 MB/s) 1482s Selecting previously unselected package fonts-lato. 1482s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85225 files and directories currently installed.) 1482s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 1482s Unpacking fonts-lato (2.015-1) ... 1482s Selecting previously unselected package python3-numpy-dev:arm64. 1482s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 1482s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 1482s Selecting previously unselected package libblas3:arm64. 1482s Preparing to unpack .../002-libblas3_3.12.1-2_arm64.deb ... 1482s Unpacking libblas3:arm64 (3.12.1-2) ... 1482s Selecting previously unselected package libgfortran5:arm64. 1482s Preparing to unpack .../003-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 1482s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 1482s Selecting previously unselected package liblapack3:arm64. 1482s Preparing to unpack .../004-liblapack3_3.12.1-2_arm64.deb ... 1482s Unpacking liblapack3:arm64 (3.12.1-2) ... 1482s Selecting previously unselected package python3-numpy. 1483s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 1483s Unpacking python3-numpy (1:2.2.3+ds-5) ... 1483s Selecting previously unselected package sgml-base. 1483s Preparing to unpack .../006-sgml-base_1.31_all.deb ... 1483s Unpacking sgml-base (1.31) ... 1483s Selecting previously unselected package m4. 1483s Preparing to unpack .../007-m4_1.4.19-7_arm64.deb ... 1483s Unpacking m4 (1.4.19-7) ... 1483s Selecting previously unselected package autoconf. 1483s Preparing to unpack .../008-autoconf_2.72-3ubuntu1_all.deb ... 1483s Unpacking autoconf (2.72-3ubuntu1) ... 1483s Selecting previously unselected package autotools-dev. 1483s Preparing to unpack .../009-autotools-dev_20220109.1_all.deb ... 1483s Unpacking autotools-dev (20220109.1) ... 1483s Selecting previously unselected package automake. 1483s Preparing to unpack .../010-automake_1%3a1.17-3ubuntu1_all.deb ... 1483s Unpacking automake (1:1.17-3ubuntu1) ... 1483s Selecting previously unselected package autopoint. 1483s Preparing to unpack .../011-autopoint_0.23.1-1_all.deb ... 1483s Unpacking autopoint (0.23.1-1) ... 1483s Selecting previously unselected package libtcl8.6:arm64. 1483s Preparing to unpack .../012-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 1483s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 1483s Selecting previously unselected package fonts-dejavu-mono. 1483s Preparing to unpack .../013-fonts-dejavu-mono_2.37-8_all.deb ... 1483s Unpacking fonts-dejavu-mono (2.37-8) ... 1483s Selecting previously unselected package fonts-dejavu-core. 1483s Preparing to unpack .../014-fonts-dejavu-core_2.37-8_all.deb ... 1483s Unpacking fonts-dejavu-core (2.37-8) ... 1483s Selecting previously unselected package fontconfig-config. 1483s Preparing to unpack .../015-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 1483s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 1483s Selecting previously unselected package libfontconfig1:arm64. 1483s Preparing to unpack .../016-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 1483s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 1483s Selecting previously unselected package libxrender1:arm64. 1483s Preparing to unpack .../017-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 1483s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 1483s Selecting previously unselected package libxft2:arm64. 1483s Preparing to unpack .../018-libxft2_2.3.6-1build1_arm64.deb ... 1483s Unpacking libxft2:arm64 (2.3.6-1build1) ... 1483s Selecting previously unselected package x11-common. 1483s Preparing to unpack .../019-x11-common_1%3a7.7+23ubuntu4_all.deb ... 1483s Unpacking x11-common (1:7.7+23ubuntu4) ... 1483s Selecting previously unselected package libxss1:arm64. 1483s Preparing to unpack .../020-libxss1_1%3a1.2.3-1build3_arm64.deb ... 1483s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 1483s Selecting previously unselected package libtk8.6:arm64. 1483s Preparing to unpack .../021-libtk8.6_8.6.16-1_arm64.deb ... 1483s Unpacking libtk8.6:arm64 (8.6.16-1) ... 1483s Selecting previously unselected package tk8.6-blt2.5. 1483s Preparing to unpack .../022-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 1483s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 1484s Selecting previously unselected package blt. 1484s Preparing to unpack .../023-blt_2.5.3+dfsg-8_arm64.deb ... 1484s Unpacking blt (2.5.3+dfsg-8) ... 1484s Selecting previously unselected package libisl23:arm64. 1484s Preparing to unpack .../024-libisl23_0.27-1_arm64.deb ... 1484s Unpacking libisl23:arm64 (0.27-1) ... 1484s Selecting previously unselected package libmpc3:arm64. 1484s Preparing to unpack .../025-libmpc3_1.3.1-1build2_arm64.deb ... 1484s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 1484s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 1484s Preparing to unpack .../026-cpp-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 1484s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 1484s Selecting previously unselected package cpp-14. 1484s Preparing to unpack .../027-cpp-14_14.2.0-19ubuntu2_arm64.deb ... 1484s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 1484s Selecting previously unselected package cpp-aarch64-linux-gnu. 1484s Preparing to unpack .../028-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 1484s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1484s Selecting previously unselected package cpp. 1484s Preparing to unpack .../029-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 1484s Unpacking cpp (4:14.2.0-1ubuntu1) ... 1484s Selecting previously unselected package libcc1-0:arm64. 1484s Preparing to unpack .../030-libcc1-0_15-20250404-0ubuntu1_arm64.deb ... 1484s Unpacking libcc1-0:arm64 (15-20250404-0ubuntu1) ... 1484s Selecting previously unselected package libgomp1:arm64. 1484s Preparing to unpack .../031-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 1484s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 1484s Selecting previously unselected package libitm1:arm64. 1484s Preparing to unpack .../032-libitm1_15-20250404-0ubuntu1_arm64.deb ... 1484s Unpacking libitm1:arm64 (15-20250404-0ubuntu1) ... 1484s Selecting previously unselected package libasan8:arm64. 1484s Preparing to unpack .../033-libasan8_15-20250404-0ubuntu1_arm64.deb ... 1484s Unpacking libasan8:arm64 (15-20250404-0ubuntu1) ... 1484s Selecting previously unselected package liblsan0:arm64. 1484s Preparing to unpack .../034-liblsan0_15-20250404-0ubuntu1_arm64.deb ... 1484s Unpacking liblsan0:arm64 (15-20250404-0ubuntu1) ... 1484s Selecting previously unselected package libtsan2:arm64. 1484s Preparing to unpack .../035-libtsan2_15-20250404-0ubuntu1_arm64.deb ... 1484s Unpacking libtsan2:arm64 (15-20250404-0ubuntu1) ... 1484s Selecting previously unselected package libubsan1:arm64. 1484s Preparing to unpack .../036-libubsan1_15-20250404-0ubuntu1_arm64.deb ... 1484s Unpacking libubsan1:arm64 (15-20250404-0ubuntu1) ... 1484s Selecting previously unselected package libhwasan0:arm64. 1484s Preparing to unpack .../037-libhwasan0_15-20250404-0ubuntu1_arm64.deb ... 1484s Unpacking libhwasan0:arm64 (15-20250404-0ubuntu1) ... 1484s Selecting previously unselected package libgcc-14-dev:arm64. 1484s Preparing to unpack .../038-libgcc-14-dev_14.2.0-19ubuntu2_arm64.deb ... 1484s Unpacking libgcc-14-dev:arm64 (14.2.0-19ubuntu2) ... 1484s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 1484s Preparing to unpack .../039-gcc-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 1484s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 1485s Selecting previously unselected package gcc-14. 1485s Preparing to unpack .../040-gcc-14_14.2.0-19ubuntu2_arm64.deb ... 1485s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 1485s Selecting previously unselected package gcc-aarch64-linux-gnu. 1485s Preparing to unpack .../041-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 1485s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1485s Selecting previously unselected package gcc. 1485s Preparing to unpack .../042-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 1485s Unpacking gcc (4:14.2.0-1ubuntu1) ... 1485s Selecting previously unselected package libstdc++-14-dev:arm64. 1485s Preparing to unpack .../043-libstdc++-14-dev_14.2.0-19ubuntu2_arm64.deb ... 1485s Unpacking libstdc++-14-dev:arm64 (14.2.0-19ubuntu2) ... 1485s Selecting previously unselected package g++-14-aarch64-linux-gnu. 1485s Preparing to unpack .../044-g++-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 1485s Unpacking g++-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 1485s Selecting previously unselected package g++-14. 1485s Preparing to unpack .../045-g++-14_14.2.0-19ubuntu2_arm64.deb ... 1485s Unpacking g++-14 (14.2.0-19ubuntu2) ... 1485s Selecting previously unselected package g++-aarch64-linux-gnu. 1485s Preparing to unpack .../046-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 1485s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1485s Selecting previously unselected package g++. 1485s Preparing to unpack .../047-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 1485s Unpacking g++ (4:14.2.0-1ubuntu1) ... 1485s Selecting previously unselected package build-essential. 1485s Preparing to unpack .../048-build-essential_12.12ubuntu1_arm64.deb ... 1485s Unpacking build-essential (12.12ubuntu1) ... 1485s Selecting previously unselected package cython3. 1485s Preparing to unpack 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libfile-stripnondeterminism-perl (1.14.1-2) ... 1486s Selecting previously unselected package dh-strip-nondeterminism. 1486s Preparing to unpack .../055-dh-strip-nondeterminism_1.14.1-2_all.deb ... 1486s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 1486s Selecting previously unselected package debugedit. 1486s Preparing to unpack .../056-debugedit_1%3a5.1-2_arm64.deb ... 1486s Unpacking debugedit (1:5.1-2) ... 1486s Selecting previously unselected package dwz. 1486s Preparing to unpack .../057-dwz_0.15-1build6_arm64.deb ... 1486s Unpacking dwz (0.15-1build6) ... 1486s Selecting previously unselected package gettext. 1486s Preparing to unpack .../058-gettext_0.23.1-1_arm64.deb ... 1486s Unpacking gettext (0.23.1-1) ... 1486s Selecting previously unselected package intltool-debian. 1486s Preparing to unpack .../059-intltool-debian_0.35.0+20060710.6_all.deb ... 1486s Unpacking intltool-debian (0.35.0+20060710.6) ... 1486s Selecting previously unselected package po-debconf. 1486s Preparing to unpack .../060-po-debconf_1.0.21+nmu1_all.deb ... 1486s Unpacking po-debconf (1.0.21+nmu1) ... 1486s Selecting previously unselected package debhelper. 1486s Preparing to unpack .../061-debhelper_13.24.1ubuntu2_all.deb ... 1486s Unpacking debhelper (13.24.1ubuntu2) ... 1486s Selecting previously unselected package dh-python. 1486s Preparing to unpack .../062-dh-python_6.20250308_all.deb ... 1486s Unpacking dh-python (6.20250308) ... 1486s Selecting previously unselected package xml-core. 1486s Preparing to unpack .../063-xml-core_0.19_all.deb ... 1486s Unpacking xml-core (0.19) ... 1486s Selecting previously unselected package docutils-common. 1486s Preparing to unpack .../064-docutils-common_0.21.2+dfsg-2_all.deb ... 1486s Unpacking docutils-common (0.21.2+dfsg-2) ... 1486s Selecting previously unselected package fontconfig. 1486s Preparing to unpack .../065-fontconfig_2.15.0-2.2ubuntu1_arm64.deb ... 1486s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 1486s Selecting previously unselected package fonts-font-awesome. 1486s Preparing to unpack .../066-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1486s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1486s Selecting previously unselected package fonts-glyphicons-halflings. 1486s Preparing to unpack .../067-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1486s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1486s Selecting previously unselected package fonts-lyx. 1486s Preparing to unpack .../068-fonts-lyx_2.4.3-1_all.deb ... 1486s Unpacking fonts-lyx (2.4.3-1) ... 1486s Selecting previously unselected package fonts-mathjax. 1486s Preparing to unpack .../069-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1486s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1487s Selecting previously unselected package libaec0:arm64. 1487s Preparing to unpack .../070-libaec0_1.1.3-1_arm64.deb ... 1487s Unpacking libaec0:arm64 (1.1.3-1) ... 1487s Selecting previously unselected package libllvm17t64:arm64. 1487s Preparing to unpack .../071-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 1487s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 1487s Selecting previously unselected package libamd-comgr2:arm64. 1487s Preparing to unpack .../072-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 1487s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 1487s Selecting previously unselected package libhsakmt1:arm64. 1487s Preparing to unpack .../073-libhsakmt1_5.7.0-1build1_arm64.deb ... 1487s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 1487s Selecting previously unselected package libhsa-runtime64-1. 1487s Preparing to unpack .../074-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 1487s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 1488s Selecting previously unselected package libamdhip64-5. 1488s Preparing to unpack .../075-libamdhip64-5_5.7.1-5build1_arm64.deb ... 1488s Unpacking libamdhip64-5 (5.7.1-5build1) ... 1488s Selecting previously unselected package libboost-iostreams1.83.0:arm64. 1488s Preparing to unpack .../076-libboost-iostreams1.83.0_1.83.0-4.2ubuntu1_arm64.deb ... 1488s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 1488s Selecting previously unselected package libpixman-1-0:arm64. 1488s Preparing to unpack .../077-libpixman-1-0_0.44.0-3_arm64.deb ... 1488s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 1488s Selecting previously unselected package libxcb-render0:arm64. 1488s Preparing to unpack .../078-libxcb-render0_1.17.0-2_arm64.deb ... 1488s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 1488s Selecting previously unselected package libxcb-shm0:arm64. 1488s Preparing to unpack .../079-libxcb-shm0_1.17.0-2_arm64.deb ... 1488s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 1488s Selecting previously unselected package libcairo2:arm64. 1488s Preparing to unpack .../080-libcairo2_1.18.4-1_arm64.deb ... 1488s Unpacking libcairo2:arm64 (1.18.4-1) ... 1488s Selecting previously unselected package libdeflate0:arm64. 1488s Preparing to unpack .../081-libdeflate0_1.23-1_arm64.deb ... 1488s Unpacking libdeflate0:arm64 (1.23-1) ... 1488s Selecting previously unselected package libdouble-conversion3:arm64. 1488s Preparing to unpack .../082-libdouble-conversion3_3.3.1-1_arm64.deb ... 1488s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 1488s Selecting previously unselected package libwayland-server0:arm64. 1488s Preparing to unpack .../083-libwayland-server0_1.23.1-3_arm64.deb ... 1488s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 1488s Selecting previously unselected package libx11-xcb1:arm64. 1488s Preparing to unpack .../084-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 1488s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 1488s Selecting previously unselected package libxcb-dri3-0:arm64. 1488s Preparing to unpack .../085-libxcb-dri3-0_1.17.0-2_arm64.deb ... 1488s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 1488s Selecting previously unselected package libxcb-present0:arm64. 1488s Preparing to unpack .../086-libxcb-present0_1.17.0-2_arm64.deb ... 1488s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 1488s Selecting previously unselected package libxcb-randr0:arm64. 1488s Preparing to unpack .../087-libxcb-randr0_1.17.0-2_arm64.deb ... 1488s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 1488s Selecting previously unselected package libxcb-sync1:arm64. 1488s Preparing to unpack .../088-libxcb-sync1_1.17.0-2_arm64.deb ... 1488s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 1488s Selecting previously unselected package libxcb-xfixes0:arm64. 1488s Preparing to unpack .../089-libxcb-xfixes0_1.17.0-2_arm64.deb ... 1488s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 1488s Selecting previously unselected package libxshmfence1:arm64. 1488s Preparing to unpack .../090-libxshmfence1_1.3-1build5_arm64.deb ... 1488s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 1488s Selecting previously unselected package mesa-libgallium:arm64. 1488s Preparing to unpack .../091-mesa-libgallium_25.0.3-1ubuntu2_arm64.deb ... 1488s Unpacking mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 1488s Selecting previously unselected package libgbm1:arm64. 1488s Preparing to unpack .../092-libgbm1_25.0.3-1ubuntu2_arm64.deb ... 1488s Unpacking libgbm1:arm64 (25.0.3-1ubuntu2) ... 1488s Selecting previously unselected package libwayland-client0:arm64. 1488s Preparing to unpack .../093-libwayland-client0_1.23.1-3_arm64.deb ... 1488s Unpacking libwayland-client0:arm64 (1.23.1-3) ... 1488s Selecting previously unselected package libegl-mesa0:arm64. 1488s Preparing to unpack .../094-libegl-mesa0_25.0.3-1ubuntu2_arm64.deb ... 1488s Unpacking libegl-mesa0:arm64 (25.0.3-1ubuntu2) ... 1488s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 1488s Preparing to unpack .../095-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 1488s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 1489s Selecting previously unselected package libexpat1-dev:arm64. 1489s Preparing to unpack .../096-libexpat1-dev_2.7.1-1_arm64.deb ... 1489s Unpacking libexpat1-dev:arm64 (2.7.1-1) ... 1489s Selecting previously unselected package librdmacm1t64:arm64. 1489s Preparing to unpack .../097-librdmacm1t64_56.0-4ubuntu1_arm64.deb ... 1489s Unpacking librdmacm1t64:arm64 (56.0-4ubuntu1) ... 1489s Selecting previously unselected package libfabric1:arm64. 1489s Preparing to unpack .../098-libfabric1_1.17.0-3.1_arm64.deb ... 1489s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 1489s Selecting previously unselected package libvulkan1:arm64. 1489s Preparing to unpack .../099-libvulkan1_1.4.304.0-1_arm64.deb ... 1489s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 1489s Selecting previously unselected package libgl1-mesa-dri:arm64. 1489s Preparing to unpack .../100-libgl1-mesa-dri_25.0.3-1ubuntu2_arm64.deb ... 1489s Unpacking libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 1489s Selecting previously unselected package libglvnd0:arm64. 1489s Preparing to unpack .../101-libglvnd0_1.7.0-1build1_arm64.deb ... 1489s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 1489s Selecting previously unselected package libxcb-glx0:arm64. 1489s Preparing to unpack .../102-libxcb-glx0_1.17.0-2_arm64.deb ... 1489s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 1489s Selecting previously unselected package libxxf86vm1:arm64. 1489s Preparing to unpack .../103-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 1489s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 1489s Selecting previously unselected package libglx-mesa0:arm64. 1489s Preparing to unpack .../104-libglx-mesa0_25.0.3-1ubuntu2_arm64.deb ... 1489s Unpacking libglx-mesa0:arm64 (25.0.3-1ubuntu2) ... 1489s Selecting previously unselected package libglx0:arm64. 1489s Preparing to unpack .../105-libglx0_1.7.0-1build1_arm64.deb ... 1489s Unpacking libglx0:arm64 (1.7.0-1build1) ... 1489s Selecting previously unselected package libgl1:arm64. 1489s Preparing to unpack .../106-libgl1_1.7.0-1build1_arm64.deb ... 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Selecting previously unselected package libhdf5-310:arm64. 1489s Preparing to unpack .../112-libhdf5-310_1.14.5+repack-3_arm64.deb ... 1489s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 1489s Selecting previously unselected package libhdf5-hl-310:arm64. 1489s Preparing to unpack .../113-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 1489s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 1489s Selecting previously unselected package libhwloc15:arm64. 1489s Preparing to unpack .../114-libhwloc15_2.12.0-1_arm64.deb ... 1489s Unpacking libhwloc15:arm64 (2.12.0-1) ... 1489s Selecting previously unselected package libice6:arm64. 1489s Preparing to unpack .../115-libice6_2%3a1.1.1-1_arm64.deb ... 1489s Unpacking libice6:arm64 (2:1.1.1-1) ... 1489s Selecting previously unselected package libimagequant0:arm64. 1489s Preparing to unpack .../116-libimagequant0_2.18.0-1build1_arm64.deb ... 1489s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 1489s Selecting previously unselected package libinchi1.07. 1489s Preparing to unpack .../117-libinchi1.07_1.07.3+dfsg-1_arm64.deb ... 1489s Unpacking libinchi1.07 (1.07.3+dfsg-1) ... 1489s Selecting previously unselected package libwacom-common. 1489s Preparing to unpack .../118-libwacom-common_2.14.0-1_all.deb ... 1489s Unpacking libwacom-common (2.14.0-1) ... 1489s Selecting previously unselected package libwacom9:arm64. 1489s Preparing to unpack .../119-libwacom9_2.14.0-1_arm64.deb ... 1489s Unpacking libwacom9:arm64 (2.14.0-1) ... 1489s Selecting previously unselected package libinput-bin. 1489s Preparing to unpack .../120-libinput-bin_1.27.1-1_arm64.deb ... 1489s Unpacking libinput-bin (1.27.1-1) ... 1489s Selecting previously unselected package libmtdev1t64:arm64. 1489s Preparing to unpack .../121-libmtdev1t64_1.1.7-1_arm64.deb ... 1489s Unpacking libmtdev1t64:arm64 (1.1.7-1) ... 1489s Selecting previously unselected package libinput10:arm64. 1490s Preparing to unpack .../122-libinput10_1.27.1-1_arm64.deb ... 1490s Unpacking libinput10:arm64 (1.27.1-1) ... 1490s Selecting previously unselected package libjpeg-turbo8:arm64. 1490s Preparing to unpack .../123-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 1490s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 1490s Selecting previously unselected package libjpeg8:arm64. 1490s Preparing to unpack .../124-libjpeg8_8c-2ubuntu11_arm64.deb ... 1490s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 1490s Selecting previously unselected package libjs-bootstrap. 1490s Preparing to unpack .../125-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 1490s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 1490s Selecting previously unselected package libjs-jquery. 1490s Preparing to unpack .../126-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1490s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1490s Selecting previously unselected package libjs-jquery-ui. 1490s Preparing to unpack .../127-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 1490s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 1490s Selecting previously unselected package libjs-underscore. 1490s Preparing to unpack .../128-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 1490s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1490s Selecting previously unselected package libjs-sphinxdoc. 1490s Preparing to unpack .../129-libjs-sphinxdoc_8.1.3-5_all.deb ... 1490s Unpacking libjs-sphinxdoc (8.1.3-5) ... 1490s Selecting previously unselected package libjson-perl. 1490s Preparing to unpack .../130-libjson-perl_4.10000-1_all.deb ... 1490s Unpacking libjson-perl (4.10000-1) ... 1490s Selecting previously unselected package libjsoncpp26:arm64. 1490s Preparing to unpack .../131-libjsoncpp26_1.9.6-3_arm64.deb ... 1490s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 1490s Selecting previously unselected package liblbfgsb0:arm64. 1490s Preparing to unpack .../132-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 1490s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 1490s Selecting previously unselected package liblcms2-2:arm64. 1490s Preparing to unpack .../133-liblcms2-2_2.16-2_arm64.deb ... 1490s Unpacking liblcms2-2:arm64 (2.16-2) ... 1490s Selecting previously unselected package liblerc4:arm64. 1490s Preparing to unpack .../134-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 1490s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 1490s Selecting previously unselected package liblzf1:arm64. 1490s Preparing to unpack .../135-liblzf1_3.6-4_arm64.deb ... 1490s Unpacking liblzf1:arm64 (3.6-4) ... 1490s Selecting previously unselected package libmaeparser1:arm64. 1490s Preparing to unpack .../136-libmaeparser1_1.3.1-1build1_arm64.deb ... 1490s Unpacking libmaeparser1:arm64 (1.3.1-1build1) ... 1490s Selecting previously unselected package libmd4c0:arm64. 1490s Preparing to unpack .../137-libmd4c0_0.5.2-2_arm64.deb ... 1490s Unpacking libmd4c0:arm64 (0.5.2-2) ... 1490s Selecting previously unselected package libnetcdf22:arm64. 1490s Preparing to unpack .../138-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 1490s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 1490s Selecting previously unselected package libogg0:arm64. 1490s Preparing to unpack .../139-libogg0_1.3.5-3build1_arm64.deb ... 1490s Unpacking libogg0:arm64 (1.3.5-3build1) ... 1490s Selecting previously unselected package libopenbabel7. 1490s Preparing to unpack .../140-libopenbabel7_3.1.1+dfsg-11ubuntu3_arm64.deb ... 1490s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 1490s Selecting previously unselected package libmunge2:arm64. 1490s Preparing to unpack .../141-libmunge2_0.5.16-1_arm64.deb ... 1490s Unpacking libmunge2:arm64 (0.5.16-1) ... 1490s Selecting previously unselected package libpciaccess0:arm64. 1490s Preparing to unpack .../142-libpciaccess0_0.17-3build1_arm64.deb ... 1490s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 1490s Selecting previously unselected package libxnvctrl0:arm64. 1490s Preparing to unpack .../143-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 1490s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) 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unselected package libucx0:arm64. 1491s Preparing to unpack .../149-libucx0_1.18.1+ds-2_arm64.deb ... 1491s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 1491s Selecting previously unselected package libopenmpi40:arm64. 1491s Preparing to unpack .../150-libopenmpi40_5.0.7-1_arm64.deb ... 1491s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 1491s Selecting previously unselected package libpcre2-16-0:arm64. 1491s Preparing to unpack .../151-libpcre2-16-0_10.45-1_arm64.deb ... 1491s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 1491s Selecting previously unselected package proj-data. 1491s Preparing to unpack .../152-proj-data_9.5.1-1_all.deb ... 1491s Unpacking proj-data (9.5.1-1) ... 1491s Selecting previously unselected package libjbig0:arm64. 1491s Preparing to unpack .../153-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 1491s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 1491s Selecting previously unselected package libsharpyuv0:arm64. 1491s Preparing to unpack .../154-libsharpyuv0_1.5.0-0.1_arm64.deb 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Unpacking libpython3.13-dev:arm64 (3.13.3-1) ... 1491s Selecting previously unselected package libpython3-dev:arm64. 1491s Preparing to unpack .../160-libpython3-dev_3.13.3-1_arm64.deb ... 1491s Unpacking libpython3-dev:arm64 (3.13.3-1) ... 1491s Selecting previously unselected package libpython3-all-dev:arm64. 1491s Preparing to unpack .../161-libpython3-all-dev_3.13.3-1_arm64.deb ... 1491s Unpacking libpython3-all-dev:arm64 (3.13.3-1) ... 1491s Selecting previously unselected package libqhull-r8.0:arm64. 1491s Preparing to unpack .../162-libqhull-r8.0_2020.2-6build1_arm64.deb ... 1491s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 1491s Selecting previously unselected package libqt5core5t64:arm64. 1491s Preparing to unpack .../163-libqt5core5t64_5.15.15+dfsg-4ubuntu1_arm64.deb ... 1491s Unpacking libqt5core5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 1491s Selecting previously unselected package libqt5dbus5t64:arm64. 1491s Preparing to unpack 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1493s Unpacking openmpi-bin (5.0.7-1) ... 1493s Selecting previously unselected package packmol. 1493s Preparing to unpack .../195-packmol_1%3a20.15.3-1_arm64.deb ... 1493s Unpacking packmol (1:20.15.3-1) ... 1493s Selecting previously unselected package python3-pyproject-hooks. 1494s Preparing to unpack .../196-python3-pyproject-hooks_1.2.0-1_all.deb ... 1494s Unpacking python3-pyproject-hooks (1.2.0-1) ... 1494s Selecting previously unselected package python3-toml. 1494s Preparing to unpack .../197-python3-toml_0.10.2-1_all.deb ... 1494s Unpacking python3-toml (0.10.2-1) ... 1494s Selecting previously unselected package python3-wheel. 1494s Preparing to unpack .../198-python3-wheel_0.45.1-1_all.deb ... 1494s Unpacking python3-wheel (0.45.1-1) ... 1494s Selecting previously unselected package python3-build. 1494s Preparing to unpack .../199-python3-build_1.2.2-1_all.deb ... 1494s Unpacking python3-build (1.2.2-1) ... 1494s Selecting previously unselected package python3-installer. 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1497s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 1497s Selecting previously unselected package python3-pil:arm64. 1497s Preparing to unpack .../216-python3-pil_11.1.0-5build1_arm64.deb ... 1497s Unpacking python3-pil:arm64 (11.1.0-5build1) ... 1497s Selecting previously unselected package python3.13-tk. 1497s Preparing to unpack .../217-python3.13-tk_3.13.3-1_arm64.deb ... 1497s Unpacking python3.13-tk (3.13.3-1) ... 1497s Selecting previously unselected package python3-tk:arm64. 1497s Preparing to unpack .../218-python3-tk_3.13.3-1_arm64.deb ... 1497s Unpacking python3-tk:arm64 (3.13.3-1) ... 1497s Selecting previously unselected package python3-pil.imagetk:arm64. 1497s Preparing to unpack .../219-python3-pil.imagetk_11.1.0-5build1_arm64.deb ... 1497s Unpacking python3-pil.imagetk:arm64 (11.1.0-5build1) ... 1498s Selecting previously unselected package python3-contourpy. 1498s Preparing to unpack .../220-python3-contourpy_1.3.1-1build1_arm64.deb ... 1498s Unpacking python3-contourpy 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unselected package python3-roman. 1499s Preparing to unpack .../242-python3-roman_5.0-1_all.deb ... 1499s Unpacking python3-roman (5.0-1) ... 1499s Selecting previously unselected package python3-docutils. 1499s Preparing to unpack .../243-python3-docutils_0.21.2+dfsg-2_all.deb ... 1499s Unpacking python3-docutils (0.21.2+dfsg-2) ... 1499s Selecting previously unselected package python3-email-validator. 1499s Preparing to unpack .../244-python3-email-validator_2.2.0-1_all.deb ... 1499s Unpacking python3-email-validator (2.2.0-1) ... 1499s Selecting previously unselected package python3-fastjsonschema. 1499s Preparing to unpack .../245-python3-fastjsonschema_2.21.1-1_all.deb ... 1499s Unpacking python3-fastjsonschema (2.21.1-1) ... 1499s Selecting previously unselected package python3-frozendict. 1499s Preparing to unpack .../246-python3-frozendict_2.4.6-1_all.deb ... 1499s Unpacking python3-frozendict (2.4.6-1) ... 1500s Selecting previously unselected package python3-h5py-serial. 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python3-pluggy. 1502s Preparing to unpack .../273-python3-pluggy_1.5.0-1_all.deb ... 1502s Unpacking python3-pluggy (1.5.0-1) ... 1502s Selecting previously unselected package python3-pybtex. 1502s Preparing to unpack .../274-python3-pybtex_0.24.0-4_all.deb ... 1502s Unpacking python3-pybtex (0.24.0-4) ... 1502s Selecting previously unselected package python3-tabulate. 1502s Preparing to unpack .../275-python3-tabulate_0.9.0-1_all.deb ... 1502s Unpacking python3-tabulate (0.9.0-1) ... 1502s Selecting previously unselected package python3-uncertainties. 1502s Preparing to unpack .../276-python3-uncertainties_3.2.2-1_all.deb ... 1502s Unpacking python3-uncertainties (3.2.2-1) ... 1502s Selecting previously unselected package python3-pymatgen. 1502s Preparing to unpack .../277-python3-pymatgen_2025.2.18+dfsg1-4_arm64.deb ... 1502s Unpacking python3-pymatgen (2025.2.18+dfsg1-4) ... 1503s Selecting previously unselected package python3-pytest. 1503s Preparing to unpack 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up autotools-dev (20220109.1) ... 1508s Setting up libblas3:arm64 (3.12.1-2) ... 1508s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 1508s Setting up libxcb-xinerama0:arm64 (1.17.0-2) ... 1508s Setting up libmunge2:arm64 (0.5.16-1) ... 1508s Setting up libllvm17t64:arm64 (1:17.0.6-21) ... 1508s Setting up libexpat1-dev:arm64 (2.7.1-1) ... 1508s Setting up python3-pyproject-hooks (1.2.0-1) ... 1508s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 1508s Setting up python3-snowballstemmer (2.2.0-4build1) ... 1508s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-4.2ubuntu1) ... 1508s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 1508s Setting up python3-brotli (1.1.0-2build4) ... 1508s Setting up liblzf1:arm64 (3.6-4) ... 1508s Setting up python3-cycler (0.12.1-1) ... 1508s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 1508s Setting up libxkbcommon-x11-0:arm64 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libopenjp2-7:arm64 (2.5.3-2) ... 1510s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 1510s Setting up python3-email-validator (2.2.0-1) ... 1511s Setting up sgml-base (1.31) ... 1511s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 1511s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 1511s Setting up libtsan2:arm64 (15-20250404-0ubuntu1) ... 1511s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1511s Setting up python3-mpmath (1.3.0-1) ... 1511s Setting up libisl23:arm64 (0.27-1) ... 1511s Setting up python3-build (1.2.2-1) ... 1511s Setting up python-matplotlib-data (3.10.1+dfsg1-3) ... 1511s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 1511s Setting up libinchi1.07 (1.07.3+dfsg-1) ... 1511s Setting up python3-soupsieve (2.6-1) ... 1511s Setting up pymatgen-test-files (2025.2.18-1) ... 1511s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1511s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 1511s Setting up libcc1-0:arm64 (15-20250404-0ubuntu1) ... 1511s Setting up python3-jupyter-core (5.7.2-5) ... 1511s Setting up liblsan0:arm64 (15-20250404-0ubuntu1) ... 1511s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 1511s Setting up libsz2:arm64 (1.1.3-1) ... 1511s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 1511s Setting up libitm1:arm64 (15-20250404-0ubuntu1) ... 1511s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1511s Setting up python3-imagesize (1.4.1-1) ... 1512s Setting up libwacom-common (2.14.0-1) ... 1512s Setting up libwayland-client0:arm64 (1.23.1-3) ... 1512s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 1512s Setting up automake (1:1.17-3ubuntu1) ... 1512s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 1512s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 1512s Setting up libfabric1:arm64 (1.17.0-3.1) ... 1512s Setting up python3-sympy (1.13.3-5) ... 1517s Setting up libice6:arm64 (2:1.1.1-1) ... 1517s Setting up mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 1517s Setting up liblapack3:arm64 (3.12.1-2) ... 1517s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 1517s Setting up libqt5dbus5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 1517s Setting up gettext (0.23.1-1) ... 1517s Setting up libgbm1:arm64 (25.0.3-1ubuntu2) ... 1517s Setting up libwacom9:arm64 (2.14.0-1) ... 1517s Setting up pybuild-plugin-pyproject (6.20250308) ... 1517s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 1517s Setting up python3-pytest (8.3.5-1) ... 1518s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 1518s Setting up libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 1518s Setting up libqt5network5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 1518s Setting up python3-nbformat (5.9.1-1) ... 1518s Setting up libhwloc-plugins:arm64 (2.12.0-1) ... 1518s Setting up python3-bs4 (4.13.3-2) ... 1518s Setting up libinput-bin (1.27.1-1) ... 1518s Setting up libtbbbind-2-5:arm64 (2022.0.0-2) ... 1518s Setting up intltool-debian (0.35.0+20060710.6) ... 1518s Setting up libmaeparser1:arm64 (1.3.1-1build1) ... 1518s Setting up libegl-mesa0:arm64 (25.0.3-1ubuntu2) ... 1518s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1518s Setting up packmol (1:20.15.3-1) ... 1518s Setting up python3-pydantic (2.10.6-1) ... 1518s Setting up libraqm0:arm64 (0.10.2-1) ... 1518s Setting up libpython3.13-dev:arm64 (3.13.3-1) ... 1518s Setting up libpmix2t64:arm64 (5.0.6-5) ... 1518s Setting up python3-plotly (5.20.0+dfsg-1) ... 1524s Setting up python3-numpy (1:2.2.3+ds-5) ... 1526s Setting up libjs-sphinxdoc (8.1.3-5) ... 1526s Setting up dh-strip-nondeterminism (1.14.1-2) ... 1526s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 1526s Setting up cpp-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 1526s Setting up python3-lxml:arm64 (5.3.2-1) ... 1526s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 1526s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 1526s Setting up xml-core (0.19) ... 1526s Setting up libegl1:arm64 (1.7.0-1build1) ... 1526s Setting up python3-contourpy (1.3.1-1build1) ... 1526s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 1526s Setting up libgcc-14-dev:arm64 (14.2.0-19ubuntu2) ... 1526s Setting up python3-spglib (2.5.0-2build1) ... 1526s Setting up libstdc++-14-dev:arm64 (14.2.0-19ubuntu2) ... 1526s Setting up libsm6:arm64 (2:1.2.4-1) ... 1526s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 1526s Setting up python3-uncertainties (3.2.2-1) ... 1526s Setting up libinput10:arm64 (1.27.1-1) ... 1526s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 1526s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 1528s Regenerating fonts cache... done. 1528s Setting up libxft2:arm64 (2.3.6-1build1) ... 1528s Setting up libglx-mesa0:arm64 (25.0.3-1ubuntu2) ... 1528s Setting up python3-scipy (1.14.1-4ubuntu2) ... 1531s Setting up libpython3-dev:arm64 (3.13.3-1) ... 1531s Setting up libglx0:arm64 (1.7.0-1build1) ... 1531s Setting up libproj25:arm64 (9.5.1-1) ... 1531s Setting up python3.13-dev (3.13.3-1) ... 1531s Setting up po-debconf (1.0.21+nmu1) ... 1531s Setting up libtk8.6:arm64 (8.6.16-1) ... 1531s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-8build1) ... 1531s Setting up libnetcdf22:arm64 (1:4.9.3-1) ... 1531s Setting up python3-h5py-serial (3.13.0-1) ... 1532s Setting up libtbb12:arm64 (2022.0.0-2) ... 1532s Setting up python-pymatgen-doc (2025.2.18+dfsg1-4) ... 1532s Setting up libcairo2:arm64 (1.18.4-1) ... 1532s Setting up python3.13-tk (3.13.3-1) ... 1532s Setting up python3-pil:arm64 (11.1.0-5build1) ... 1532s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1532s Setting up libgl1:arm64 (1.7.0-1build1) ... 1532s Setting up python3-pandas (2.2.3+dfsg-8build1) ... 1536s Setting up libamdhip64-5 (5.7.1-5build1) ... 1536s Setting up libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 1536s Setting up libpython3-all-dev:arm64 (3.13.3-1) ... 1536s Setting up sphinx-common (8.1.3-5) ... 1536s Setting up python3-dev (3.13.3-1) ... 1536s Setting up python3-h5py (3.13.0-1) ... 1536s Setting up python3-cftime (1.6.4-2) ... 1536s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 1536s Setting up cpp-14 (14.2.0-19ubuntu2) ... 1536s Setting up cpp (4:14.2.0-1ubuntu1) ... 1536s Setting up python3-monty (2025.3.3-1) ... 1537s Setting up gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 1537s Setting up python3-netcdf4 (1.7.2-1build4) ... 1537s Setting up python3-all-dev (3.13.3-1) ... 1537s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1537s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 1537s Setting up libucx0:arm64 (1.18.1+ds-2) ... 1537s Setting up g++-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 1537s Setting up blt (2.5.3+dfsg-8) ... 1537s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 1537s Setting up python3-tk:arm64 (3.13.3-1) ... 1537s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 1537s Setting up gcc-14 (14.2.0-19ubuntu2) ... 1537s Setting up libqt5gui5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 1537s Setting up python3-pil.imagetk:arm64 (11.1.0-5build1) ... 1537s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1537s Setting up g++-14 (14.2.0-19ubuntu2) ... 1537s Setting up libopenmpi40:arm64 (5.0.7-1) ... 1537s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 1537s Setting up libtool (2.5.4-4) ... 1537s Setting up libqt5widgets5t64:arm64 (5.15.15+dfsg-4ubuntu1) ... 1537s Setting up gcc (4:14.2.0-1ubuntu1) ... 1537s Setting up dh-autoreconf (20) ... 1537s Setting up libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 1537s Setting up g++ (4:14.2.0-1ubuntu1) ... 1537s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1537s Setting up build-essential (12.12ubuntu1) ... 1537s Setting up openmpi-bin (5.0.7-1) ... 1537s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 1537s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 1537s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 1537s Setting up libvtk9.3-qt:arm64 (9.3.0+dfsg1-4ubuntu1) ... 1537s Setting up mpi-default-bin (1.18) ... 1537s Setting up debhelper (13.24.1ubuntu2) ... 1537s Setting up python3-mpi4py (4.0.3-3ubuntu1) ... 1537s Setting up python3-vtk9 (9.3.0+dfsg1-4ubuntu1) ... 1537s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' 1537s patn = re.compile (" \S") 1537s Setting up python3-fonttools (4.55.3-2build1) ... 1538s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 1538s Setting up python3-matplotlib (3.10.1+dfsg1-3) ... 1540s Setting up python3-ase (3.24.0-1) ... 1541s Setting up python3-phonopy (2.35.0-1) ... 1541s Setting up python3-pymatgen (2025.2.18+dfsg1-4) ... 1543s Processing triggers for libc-bin (2.41-6ubuntu1) ... 1543s Processing triggers for man-db (2.13.0-1) ... 1544s Processing triggers for udev (257.4-1ubuntu3) ... 1544s Processing triggers for install-info (7.1.1-1) ... 1544s Processing triggers for sgml-base (1.31) ... 1544s Setting up docutils-common (0.21.2+dfsg-2) ... 1544s Processing triggers for sgml-base (1.31) ... 1544s Setting up python3-docutils (0.21.2+dfsg-2) ... 1545s Setting up python3-sphinx (8.1.3-5) ... 1545s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 1546s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... 1557s autopkgtest [10:51:15]: test test-pymatgen-net: [----------------------- 1557s running network tests with NET_TEST_LIST=test_get_structure_by_id 1558s ============================= test session starts ============================== 1558s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 1558s cachedir: .pytest_cache 1558s rootdir: /tmp/autopkgtest.JaIr91/build.wJx/src 1558s configfile: pyproject.toml 1558s plugins: typeguard-4.4.2 1579s collecting ... collected 3117 items / 3116 deselected / 7 skipped / 1 selected 1579s 1579s tests/ext/test_cod.py::TestCOD::test_get_structure_by_id PASSED [100%] 1579s 1579s ============================= slowest 30 durations ============================= 1579s 0.20s call tests/ext/test_cod.py::TestCOD::test_get_structure_by_id 1579s 1579s (2 durations < 0.005s hidden. Use -vv to show these durations.) 1579s =========================== short test summary info ============================ 1579s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 1579s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down 1579s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' 1579s SKIPPED [1] tests/io/test_shengbte.py:10: could not import 'f90nml': No module named 'f90nml' 1579s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed 1579s SKIPPED [1] tests/performance/test_import_time.py:32: ref time only comparable in CI runner 1579s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed 1579s ================ 1 passed, 7 skipped, 3116 deselected in 21.09s ================ 1580s autopkgtest [10:51:38]: test test-pymatgen-net: -----------------------] 1581s autopkgtest [10:51:39]: test test-pymatgen-net: - - - - - - - - - - results - - - - - - - - - - 1581s test-pymatgen-net PASS 1581s autopkgtest [10:51:39]: @@@@@@@@@@@@@@@@@@@@ summary 1581s test-pymatgen PASS 1581s test-pymatgen-net PASS 1586s nova [W] Using flock in prodstack7-arm64 1586s Creating nova instance adt-questing-arm64-pymatgen-20250502-102518-juju-7f2275-prod-proposed-migration-environment-2-a3edd196-493e-4f01-b0ae-ade5dd260fb3 from image adt/ubuntu-questing-arm64-server-20250501.img (UUID 137c3127-57d2-4bf2-a106-d904ad6e43f4)... 1586s nova [W] Timed out waiting for 4f6eeea0-d9ed-4337-b969-0dcc7cf96a3e to get deleted. 1586s nova [W] Using flock in prodstack7-arm64 1586s Creating nova instance adt-questing-arm64-pymatgen-20250502-102518-juju-7f2275-prod-proposed-migration-environment-2-a3edd196-493e-4f01-b0ae-ade5dd260fb3 from image adt/ubuntu-questing-arm64-server-20250501.img (UUID 137c3127-57d2-4bf2-a106-d904ad6e43f4)... 1586s nova [W] Timed out waiting for d33014c9-7063-4fb0-8ad4-3b7a2ca2b43b to get deleted.