0s autopkgtest [13:20:16]: starting date and time: 2025-05-02 13:20:16+0000 0s autopkgtest [13:20:16]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [13:20:16]: host juju-7f2275-prod-proposed-migration-environment-21; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3gov03gc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest --apt-upgrade mirtop --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.3.5-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-21@bos03-arm64-8.secgroup --name adt-questing-arm64-mirtop-20250502-132016-juju-7f2275-prod-proposed-migration-environment-21-b0cfc2af-1e0f-41ec-8b96-7eee9a39d337 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-21 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 165s autopkgtest [13:23:01]: testbed dpkg architecture: arm64 166s autopkgtest [13:23:02]: testbed apt version: 3.0.0 167s autopkgtest [13:23:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 167s autopkgtest [13:23:03]: testbed release detected to be: None 169s autopkgtest [13:23:05]: updating testbed package index (apt update) 170s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 170s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 170s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 170s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 171s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 171s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [171 kB] 171s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2029 kB] 171s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [218 kB] 171s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1476 kB] 171s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 172s Fetched 4063 kB in 2s (2485 kB/s) 173s Reading package lists... 175s autopkgtest [13:23:11]: upgrading testbed (apt dist-upgrade and autopurge) 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 178s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 178s Starting 2 pkgProblemResolver with broken count: 0 178s Done 179s Entering ResolveByKeep 180s 180s Calculating upgrade... 182s The following packages will be upgraded: 182s htop libnpth0t64 mokutil mtd-utils nano usb.ids 182s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s Need to get 1196 kB of archives. 182s After this operation, 727 kB of additional disk space will be used. 182s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 libnpth0t64 arm64 1.8-3 [8818 B] 182s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 182s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 usb.ids all 2025.04.01-1 [223 kB] 183s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 183s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 mokutil arm64 0.7.2-1 [28.4 kB] 183s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 187s Fetched 1196 kB in 1s (957 kB/s) 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 188s Preparing to unpack .../libnpth0t64_1.8-3_arm64.deb ... 188s Unpacking libnpth0t64:arm64 (1.8-3) over (1.8-2) ... 189s Setting up libnpth0t64:arm64 (1.8-3) ... 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 190s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 190s Unpacking nano (8.4-1) over (8.3-1) ... 191s Preparing to unpack .../usb.ids_2025.04.01-1_all.deb ... 191s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 192s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 192s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 193s Preparing to unpack .../mokutil_0.7.2-1_arm64.deb ... 193s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ... 195s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 195s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 195s Setting up mokutil (0.7.2-1) ... 195s Setting up htop (3.4.1-4) ... 195s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 195s Setting up usb.ids (2025.04.01-1) ... 195s Setting up nano (8.4-1) ... 195s Installing new version of config file /etc/nanorc ... 195s Processing triggers for libc-bin (2.41-6ubuntu1) ... 196s Processing triggers for man-db (2.13.0-1) ... 198s Processing triggers for install-info (7.1.1-1) ... 201s Reading package lists... 202s Building dependency tree... 202s Reading state information... 203s Starting pkgProblemResolver with broken count: 0 203s Starting 2 pkgProblemResolver with broken count: 0 203s Done 204s Solving dependencies... 206s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 211s autopkgtest [13:23:47]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 212s autopkgtest [13:23:48]: @@@@@@@@@@@@@@@@@@@@ apt-source mirtop 217s Get:1 http://ftpmaster.internal/ubuntu questing/universe mirtop 0.4.28-3 (dsc) [2340 B] 217s Get:2 http://ftpmaster.internal/ubuntu questing/universe mirtop 0.4.28-3 (tar) [718 kB] 217s Get:3 http://ftpmaster.internal/ubuntu questing/universe mirtop 0.4.28-3 (diff) [10.8 kB] 217s gpgv: Signature made Wed Feb 19 16:46:43 2025 UTC 217s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 217s gpgv: issuer "tchet@debian.org" 217s gpgv: Can't check signature: No public key 217s dpkg-source: warning: cannot verify inline signature for ./mirtop_0.4.28-3.dsc: no acceptable signature found 219s autopkgtest [13:23:55]: testing package mirtop version 0.4.28-3 219s autopkgtest [13:23:55]: build not needed 221s autopkgtest [13:23:57]: test run-unit-test: preparing testbed 221s Reading package lists... 222s Building dependency tree... 222s Reading state information... 223s Starting pkgProblemResolver with broken count: 0 223s Starting 2 pkgProblemResolver with broken count: 0 223s Done 225s The following NEW packages will be installed: 225s bedtools fontconfig-config fonts-dejavu-core fonts-dejavu-mono 225s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 225s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 225s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 225s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 225s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 mirtop 225s python3-all python3-biopython python3-cairo python3-dateutil 225s python3-freetype python3-iniconfig python3-mirtop python3-numpy 225s python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib 225s python3-pil python3-pluggy python3-pybedtools python3-pysam python3-pytest 225s python3-pytz python3-reportlab python3-rlpycairo python3-six python3-tz 225s samtools seqan-apps sgml-base w3c-sgml-lib x11-common xfonts-encodings 225s xfonts-utils xml-core 225s 0 upgraded, 65 newly installed, 0 to remove and 0 not upgraded. 225s Need to get 64.6 MB of archives. 225s After this operation, 250 MB of additional disk space will be used. 225s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 225s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 225s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 226s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 227s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 228s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 sgml-base all 1.31 [11.4 kB] 228s Get:7 http://ftpmaster.internal/ubuntu questing/universe arm64 bedtools arm64 2.31.1+dfsg-2 [636 kB] 228s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 228s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 228s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 228s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 228s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 228s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 228s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 229s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 229s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 229s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 229s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 229s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 229s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 229s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 230s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 230s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 230s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 230s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 230s Get:26 http://ftpmaster.internal/ubuntu questing/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 230s Get:27 http://ftpmaster.internal/ubuntu questing/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB] 230s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 230s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 230s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 230s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 230s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 230s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 230s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 230s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 230s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 230s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 230s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 230s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 230s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 python3-six all 1.17.0-1 [13.2 kB] 230s Get:41 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pysam arm64 0.23.0+ds-1build1 [3621 kB] 230s Get:42 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pybedtools arm64 0.10.0-4build1 [12.2 MB] 231s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB] 231s Get:44 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pytz all 2025.1-3 [162 kB] 231s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tz all 2025.1-3 [1866 B] 231s Get:46 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-8build1 [4586 kB] 232s Get:47 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 232s Get:48 http://ftpmaster.internal/ubuntu questing/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 232s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 232s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 python3-cairo arm64 1.27.0-2 [122 kB] 232s Get:51 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 232s Get:52 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 232s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-reportlab all 4.3.1-1 [1137 kB] 232s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 xml-core all 0.19 [20.3 kB] 232s Get:55 http://ftpmaster.internal/ubuntu questing/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 232s Get:56 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-biopython arm64 1.85+dfsg-2build1 [1711 kB] 233s Get:57 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-mirtop all 0.4.28-3 [61.7 kB] 233s Get:58 http://ftpmaster.internal/ubuntu questing/universe arm64 mirtop all 0.4.28-3 [13.5 kB] 233s Get:59 http://ftpmaster.internal/ubuntu questing/main arm64 python3-all arm64 3.13.3-1 [880 B] 233s Get:60 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 233s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 python3-packaging all 24.2-1 [51.5 kB] 233s Get:62 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 233s Get:63 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 233s Get:64 http://ftpmaster.internal/ubuntu questing/universe arm64 samtools arm64 1.21-1 [609 kB] 233s Get:65 http://ftpmaster.internal/ubuntu questing/universe arm64 seqan-apps arm64 2.4.0+dfsg-16 [11.8 MB] 237s Fetched 64.6 MB in 9s (7144 kB/s) 237s Selecting previously unselected package python3-numpy-dev:arm64. 237s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117821 files and directories currently installed.) 237s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 237s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 237s Selecting previously unselected package libblas3:arm64. 239s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 239s Unpacking libblas3:arm64 (3.12.1-2) ... 239s Selecting previously unselected package libgfortran5:arm64. 241s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 241s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 241s Selecting previously unselected package liblapack3:arm64. 242s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 242s Unpacking liblapack3:arm64 (3.12.1-2) ... 242s Selecting previously unselected package python3-numpy. 244s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 244s Unpacking python3-numpy (1:2.2.3+ds-5) ... 245s Selecting previously unselected package sgml-base. 246s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 246s Unpacking sgml-base (1.31) ... 246s Selecting previously unselected package bedtools. 248s Preparing to unpack .../06-bedtools_2.31.1+dfsg-2_arm64.deb ... 248s Unpacking bedtools (2.31.1+dfsg-2) ... 248s Selecting previously unselected package fonts-dejavu-mono. 249s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8_all.deb ... 249s Unpacking fonts-dejavu-mono (2.37-8) ... 249s Selecting previously unselected package fonts-dejavu-core. 251s Preparing to unpack .../08-fonts-dejavu-core_2.37-8_all.deb ... 251s Unpacking fonts-dejavu-core (2.37-8) ... 251s Selecting previously unselected package libfontenc1:arm64. 252s Preparing to unpack .../09-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 252s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 252s Selecting previously unselected package x11-common. 253s Preparing to unpack .../10-x11-common_1%3a7.7+23ubuntu4_all.deb ... 253s Unpacking x11-common (1:7.7+23ubuntu4) ... 253s Selecting previously unselected package xfonts-encodings. 254s Preparing to unpack .../11-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 254s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 254s Selecting previously unselected package xfonts-utils. 256s Preparing to unpack .../12-xfonts-utils_1%3a7.7+7_arm64.deb ... 256s Unpacking xfonts-utils (1:7.7+7) ... 256s Selecting previously unselected package fonts-urw-base35. 257s Preparing to unpack .../13-fonts-urw-base35_20200910-8_all.deb ... 258s Unpacking fonts-urw-base35 (20200910-8) ... 258s Selecting previously unselected package fontconfig-config. 259s Preparing to unpack .../14-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 261s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 261s Selecting previously unselected package libfontconfig1:arm64. 262s Preparing to unpack .../15-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 262s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 262s Selecting previously unselected package libpixman-1-0:arm64. 263s Preparing to unpack .../16-libpixman-1-0_0.44.0-3_arm64.deb ... 263s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 263s Selecting previously unselected package libxcb-render0:arm64. 264s Preparing to unpack .../17-libxcb-render0_1.17.0-2_arm64.deb ... 264s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 264s Selecting previously unselected package libxcb-shm0:arm64. 265s Preparing to unpack .../18-libxcb-shm0_1.17.0-2_arm64.deb ... 265s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 265s Selecting previously unselected package libxrender1:arm64. 266s Preparing to unpack .../19-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 266s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 266s Selecting previously unselected package libcairo2:arm64. 267s Preparing to unpack .../20-libcairo2_1.18.4-1_arm64.deb ... 267s Unpacking libcairo2:arm64 (1.18.4-1) ... 267s Selecting previously unselected package libdeflate0:arm64. 268s Preparing to unpack .../21-libdeflate0_1.23-1_arm64.deb ... 268s Unpacking libdeflate0:arm64 (1.23-1) ... 268s Selecting previously unselected package libgomp1:arm64. 269s Preparing to unpack .../22-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 269s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 269s Selecting previously unselected package libgraphite2-3:arm64. 270s Preparing to unpack .../23-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 270s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 270s Selecting previously unselected package libharfbuzz0b:arm64. 271s Preparing to unpack .../24-libharfbuzz0b_10.2.0-1_arm64.deb ... 271s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 271s Selecting previously unselected package libhtscodecs2:arm64. 271s Preparing to unpack .../25-libhtscodecs2_1.6.1-2_arm64.deb ... 271s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 271s Selecting previously unselected package libhts3t64:arm64. 272s Preparing to unpack .../26-libhts3t64_1.21+ds-1_arm64.deb ... 272s Unpacking libhts3t64:arm64 (1.21+ds-1) ... 272s Selecting previously unselected package libimagequant0:arm64. 273s Preparing to unpack .../27-libimagequant0_2.18.0-1build1_arm64.deb ... 273s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 273s Selecting previously unselected package libjpeg-turbo8:arm64. 274s Preparing to unpack .../28-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 274s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 274s Selecting previously unselected package libjpeg8:arm64. 274s Preparing to unpack .../29-libjpeg8_8c-2ubuntu11_arm64.deb ... 274s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 274s Selecting previously unselected package liblcms2-2:arm64. 275s Preparing to unpack .../30-liblcms2-2_2.16-2_arm64.deb ... 275s Unpacking liblcms2-2:arm64 (2.16-2) ... 275s Selecting previously unselected package liblerc4:arm64. 276s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 276s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 276s Selecting previously unselected package libraqm0:arm64. 276s Preparing to unpack .../32-libraqm0_0.10.2-1_arm64.deb ... 276s Unpacking libraqm0:arm64 (0.10.2-1) ... 276s Selecting previously unselected package libsharpyuv0:arm64. 277s Preparing to unpack .../33-libsharpyuv0_1.5.0-0.1_arm64.deb ... 277s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 277s Selecting previously unselected package libjbig0:arm64. 278s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 278s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 278s Selecting previously unselected package libwebp7:arm64. 279s Preparing to unpack .../35-libwebp7_1.5.0-0.1_arm64.deb ... 279s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 279s Selecting previously unselected package libtiff6:arm64. 280s Preparing to unpack .../36-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 280s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 280s Selecting previously unselected package libwebpdemux2:arm64. 281s Preparing to unpack .../37-libwebpdemux2_1.5.0-0.1_arm64.deb ... 281s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 281s Selecting previously unselected package libwebpmux3:arm64. 281s Preparing to unpack .../38-libwebpmux3_1.5.0-0.1_arm64.deb ... 281s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 282s Selecting previously unselected package python3-six. 282s Preparing to unpack .../39-python3-six_1.17.0-1_all.deb ... 282s Unpacking python3-six (1.17.0-1) ... 282s Selecting previously unselected package python3-pysam. 283s Preparing to unpack .../40-python3-pysam_0.23.0+ds-1build1_arm64.deb ... 283s Unpacking python3-pysam (0.23.0+ds-1build1) ... 283s Selecting previously unselected package python3-pybedtools. 284s Preparing to unpack .../41-python3-pybedtools_0.10.0-4build1_arm64.deb ... 284s Unpacking python3-pybedtools (0.10.0-4build1) ... 284s Selecting previously unselected package python3-dateutil. 285s Preparing to unpack .../42-python3-dateutil_2.9.0-4_all.deb ... 285s Unpacking python3-dateutil (2.9.0-4) ... 285s Selecting previously unselected package python3-pytz. 286s Preparing to unpack .../43-python3-pytz_2025.1-3_all.deb ... 286s Unpacking python3-pytz (2025.1-3) ... 286s Selecting previously unselected package python3-tz. 287s Preparing to unpack .../44-python3-tz_2025.1-3_all.deb ... 287s Unpacking python3-tz (2025.1-3) ... 287s Selecting previously unselected package python3-pandas-lib:arm64. 288s Preparing to unpack .../45-python3-pandas-lib_2.2.3+dfsg-8build1_arm64.deb ... 288s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-8build1) ... 288s Selecting previously unselected package python3-pandas. 289s Preparing to unpack .../46-python3-pandas_2.2.3+dfsg-8build1_all.deb ... 289s Unpacking python3-pandas (2.2.3+dfsg-8build1) ... 289s Selecting previously unselected package libopenjp2-7:arm64. 290s Preparing to unpack .../47-libopenjp2-7_2.5.3-2_arm64.deb ... 290s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 290s Selecting previously unselected package python3-pil:arm64. 291s Preparing to unpack .../48-python3-pil_11.1.0-5build1_arm64.deb ... 291s Unpacking python3-pil:arm64 (11.1.0-5build1) ... 292s Selecting previously unselected package python3-cairo. 293s Preparing to unpack .../49-python3-cairo_1.27.0-2_arm64.deb ... 293s Unpacking python3-cairo (1.27.0-2) ... 293s Selecting previously unselected package python3-freetype. 293s Preparing to unpack .../50-python3-freetype_2.5.1-1_all.deb ... 293s Unpacking python3-freetype (2.5.1-1) ... 294s Selecting previously unselected package python3-rlpycairo. 295s Preparing to unpack .../51-python3-rlpycairo_0.3.0-3_all.deb ... 295s Unpacking python3-rlpycairo (0.3.0-3) ... 295s Selecting previously unselected package python3-reportlab. 296s Preparing to unpack .../52-python3-reportlab_4.3.1-1_all.deb ... 296s Unpacking python3-reportlab (4.3.1-1) ... 296s Selecting previously unselected package xml-core. 297s Preparing to unpack .../53-xml-core_0.19_all.deb ... 297s Unpacking xml-core (0.19) ... 297s Selecting previously unselected package w3c-sgml-lib. 298s Preparing to unpack .../54-w3c-sgml-lib_1.3-3_all.deb ... 298s Unpacking w3c-sgml-lib (1.3-3) ... 298s Selecting previously unselected package python3-biopython. 300s Preparing to unpack .../55-python3-biopython_1.85+dfsg-2build1_arm64.deb ... 300s Unpacking python3-biopython (1.85+dfsg-2build1) ... 300s Selecting previously unselected package python3-mirtop. 302s Preparing to unpack .../56-python3-mirtop_0.4.28-3_all.deb ... 302s Unpacking python3-mirtop (0.4.28-3) ... 302s Selecting previously unselected package mirtop. 303s Preparing to unpack .../57-mirtop_0.4.28-3_all.deb ... 303s Unpacking mirtop (0.4.28-3) ... 303s Selecting previously unselected package python3-all. 304s Preparing to unpack .../58-python3-all_3.13.3-1_arm64.deb ... 304s Unpacking python3-all (3.13.3-1) ... 304s Selecting previously unselected package python3-iniconfig. 305s Preparing to unpack .../59-python3-iniconfig_1.1.1-2_all.deb ... 305s Unpacking python3-iniconfig (1.1.1-2) ... 305s Selecting previously unselected package python3-packaging. 306s Preparing to unpack .../60-python3-packaging_24.2-1_all.deb ... 306s Unpacking python3-packaging (24.2-1) ... 307s Selecting previously unselected package python3-pluggy. 308s Preparing to unpack .../61-python3-pluggy_1.5.0-1_all.deb ... 308s Unpacking python3-pluggy (1.5.0-1) ... 308s Selecting previously unselected package python3-pytest. 309s Preparing to unpack .../62-python3-pytest_8.3.5-2_all.deb ... 309s Unpacking python3-pytest (8.3.5-2) ... 310s Selecting previously unselected package samtools. 311s Preparing to unpack .../63-samtools_1.21-1_arm64.deb ... 311s Unpacking samtools (1.21-1) ... 311s Selecting previously unselected package seqan-apps. 312s Preparing to unpack .../64-seqan-apps_2.4.0+dfsg-16_arm64.deb ... 312s Unpacking seqan-apps (2.4.0+dfsg-16) ... 314s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 314s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 314s Setting up liblcms2-2:arm64 (2.16-2) ... 314s Setting up python3-iniconfig (1.1.1-2) ... 314s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 314s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 314s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 314s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 314s Setting up libxcb-render0:arm64 (1.17.0-2) ... 314s Setting up x11-common (1:7.7+23ubuntu4) ... 317s Setting up libdeflate0:arm64 (1.23-1) ... 317s Setting up python3-all (3.13.3-1) ... 317s Setting up python3-pytz (2025.1-3) ... 318s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 318s Setting up libgomp1:arm64 (15-20250404-0ubuntu1) ... 318s Setting up python3-freetype (2.5.1-1) ... 318s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 318s Setting up python3-tz (2025.1-3) ... 318s Setting up python3-six (1.17.0-1) ... 319s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 319s Setting up libblas3:arm64 (3.12.1-2) ... 319s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 319s Setting up python3-packaging (24.2-1) ... 319s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 319s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 319s Setting up seqan-apps (2.4.0+dfsg-16) ... 319s Setting up fonts-dejavu-mono (2.37-8) ... 319s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 319s Setting up fonts-dejavu-core (2.37-8) ... 319s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 319s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 319s Setting up python3-pluggy (1.5.0-1) ... 320s Setting up libwebp7:arm64 (1.5.0-0.1) ... 320s Setting up libhts3t64:arm64 (1.21+ds-1) ... 320s Setting up libopenjp2-7:arm64 (2.5.3-2) ... 320s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 320s Setting up python3-dateutil (2.9.0-4) ... 320s Setting up sgml-base (1.31) ... 320s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 320s Setting up bedtools (2.31.1+dfsg-2) ... 320s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 321s Setting up liblapack3:arm64 (3.12.1-2) ... 321s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 321s Setting up python3-pysam (0.23.0+ds-1build1) ... 321s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 323s Setting up python3-pytest (8.3.5-2) ... 323s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 323s Setting up xfonts-utils (1:7.7+7) ... 323s Setting up samtools (1.21-1) ... 323s Setting up libraqm0:arm64 (0.10.2-1) ... 323s Setting up python3-numpy (1:2.2.3+ds-5) ... 327s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 327s Setting up xml-core (0.19) ... 327s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 327s Setting up python3-pybedtools (0.10.0-4build1) ... 328s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-8build1) ... 328s Setting up fonts-urw-base35 (20200910-8) ... 329s Setting up libcairo2:arm64 (1.18.4-1) ... 329s Setting up python3-pil:arm64 (11.1.0-5build1) ... 329s Setting up python3-pandas (2.2.3+dfsg-8build1) ... 338s Setting up python3-cairo (1.27.0-2) ... 339s Setting up python3-rlpycairo (0.3.0-3) ... 339s Setting up python3-reportlab (4.3.1-1) ... 341s Processing triggers for libc-bin (2.41-6ubuntu1) ... 341s Processing triggers for man-db (2.13.0-1) ... 342s Processing triggers for sgml-base (1.31) ... 342s Setting up w3c-sgml-lib (1.3-3) ... 386s Setting up python3-biopython (1.85+dfsg-2build1) ... 388s Setting up python3-mirtop (0.4.28-3) ... 388s Setting up mirtop (0.4.28-3) ... 390s autopkgtest [13:26:46]: test run-unit-test: [----------------------- 390s Testing with python3.13 in /tmp/autopkgtest.vfXSee/autopkgtest_tmp: 391s ============================= test session starts ============================== 391s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3 391s cachedir: .pytest_cache 391s rootdir: /tmp/autopkgtest.vfXSee/autopkgtest_tmp 391s plugins: typeguard-4.4.2 391s collecting ... collected 62 items 391s 393s test/test_automated_analysis.py::AutomatedAnalysisTest::test_count PASSED [ 1%] 394s test/test_automated_analysis.py::AutomatedAnalysisTest::test_export_fasta PASSED [ 3%] 395s test/test_automated_analysis.py::AutomatedAnalysisTest::test_export_seqbuster PASSED [ 4%] 397s 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431s test/test_functions.py::FunctionsTest::test_read_hairpin PASSED [ 77%] 431s test/test_functions.py::FunctionsTest::test_read_hairpin_mirgenedb PASSED [ 79%] 431s test/test_functions.py::FunctionsTest::test_read_line PASSED [ 80%] 431s test/test_functions.py::FunctionsTest::test_read_mir2chr PASSED [ 82%] 431s test/test_functions.py::FunctionsTest::test_read_mir2genomic PASSED [ 83%] 431s test/test_functions.py::FunctionsTest::test_reverse PASSED [ 85%] 431s test/test_functions.py::FunctionsTest::test_seqbuster PASSED [ 87%] 431s test/test_functions.py::FunctionsTest::test_spikeins PASSED [ 88%] 432s test/test_functions.py::FunctionsTest::test_sql PASSED [ 90%] 432s test/test_functions.py::FunctionsTest::test_srnabench PASSED [ 91%] 432s test/test_functions.py::FunctionsTest::test_stats PASSED [ 93%] 432s test/test_functions.py::FunctionsTest::test_string_variant PASSED [ 95%] 432s test/test_functions.py::FunctionsTest::test_update PASSED [ 96%] 432s test/test_functions.py::FunctionsTest::test_validator PASSED [ 98%] 432s test/test_functions.py::FunctionsTest::test_variant PASSED [100%] 432s 432s =============================== warnings summary =============================== 432s test/test_functions.py::FunctionsTest::test_alignment 432s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 432s warnings.warn( 432s 432s test/test_functions.py::FunctionsTest::test_collapse 432s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 432s return self.run(*args, **kwds) 432s 432s test/test_functions.py::FunctionsTest::test_counts 432s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 432s return self.run(*args, **kwds) 432s 432s test/test_functions.py::FunctionsTest::test_gff 432s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 432s return self.run(*args, **kwds) 432s 432s test/test_functions.py::FunctionsTest::test_read_hairpin 432s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 432s return self.run(*args, **kwds) 432s 432s test/test_functions.py::FunctionsTest::test_sql 432s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 432s return self.run(*args, **kwds) 432s 432s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 432s ======================= 62 passed, 6 warnings in 41.05s ======================== 432s autopkgtest [13:27:28]: test run-unit-test: -----------------------] 433s run-unit-test PASS 433s autopkgtest [13:27:29]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 434s autopkgtest [13:27:30]: test autodep8-python3: preparing testbed 570s autopkgtest [13:29:46]: testbed dpkg architecture: arm64 570s autopkgtest [13:29:46]: testbed apt version: 3.0.0 571s autopkgtest [13:29:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 571s autopkgtest [13:29:47]: testbed release detected to be: questing 572s autopkgtest [13:29:48]: updating testbed package index (apt update) 572s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 572s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 572s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 572s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 572s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [171 kB] 572s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2029 kB] 573s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 573s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [218 kB] 573s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1476 kB] 573s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 573s Fetched 4063 kB in 1s (3390 kB/s) 574s Reading package lists... 575s autopkgtest [13:29:51]: upgrading testbed (apt dist-upgrade and autopurge) 575s Reading package lists... 575s Building dependency tree... 575s Reading state information... 576s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 576s Starting 2 pkgProblemResolver with broken count: 0 576s Done 576s Entering ResolveByKeep 577s 577s Calculating upgrade... 577s The following packages will be upgraded: 577s htop libnpth0t64 mokutil mtd-utils nano usb.ids 577s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 577s Need to get 1196 kB of archives. 577s After this operation, 727 kB of additional disk space will be used. 577s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 libnpth0t64 arm64 1.8-3 [8818 B] 578s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 578s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 usb.ids all 2025.04.01-1 [223 kB] 578s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 578s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 mokutil arm64 0.7.2-1 [28.4 kB] 578s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 578s Fetched 1196 kB in 1s (2032 kB/s) 579s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 579s Preparing to unpack .../libnpth0t64_1.8-3_arm64.deb ... 579s Unpacking libnpth0t64:arm64 (1.8-3) over (1.8-2) ... 579s Setting up libnpth0t64:arm64 (1.8-3) ... 579s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 579s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 579s Unpacking nano (8.4-1) over (8.3-1) ... 579s Preparing to unpack .../usb.ids_2025.04.01-1_all.deb ... 579s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 579s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 579s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 579s Preparing to unpack .../mokutil_0.7.2-1_arm64.deb ... 579s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ... 579s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 579s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 579s Setting up mokutil (0.7.2-1) ... 579s Setting up htop (3.4.1-4) ... 579s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 579s Setting up usb.ids (2025.04.01-1) ... 579s Setting up nano (8.4-1) ... 579s Installing new version of config file /etc/nanorc ... 579s Processing triggers for libc-bin (2.41-6ubuntu1) ... 579s Processing triggers for man-db (2.13.0-1) ... 581s Processing triggers for install-info (7.1.1-1) ... 581s Reading package lists... 581s Building dependency tree... 581s Reading state information... 582s Starting pkgProblemResolver with broken count: 0 582s Starting 2 pkgProblemResolver with broken count: 0 582s Done 582s Solving dependencies... 583s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 586s Reading package lists... 586s Building dependency tree... 586s Reading state information... 586s Starting pkgProblemResolver with broken count: 0 586s Starting 2 pkgProblemResolver with broken count: 0 586s Done 587s The following NEW packages will be installed: 587s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 587s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 587s libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 587s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 587s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 587s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python3-all 587s python3-biopython python3-cairo python3-dateutil python3-freetype 587s python3-mirtop python3-numpy python3-numpy-dev python3-pandas 587s python3-pandas-lib python3-pil python3-pybedtools python3-pysam python3-pytz 587s python3-reportlab python3-rlpycairo python3-six python3-tz sgml-base 587s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 587s 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. 587s Need to get 51.2 MB of archives. 587s After this operation, 183 MB of additional disk space will be used. 587s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 588s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 588s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 588s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 588s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 588s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 sgml-base all 1.31 [11.4 kB] 588s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 588s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 588s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 588s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 588s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 588s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 588s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 589s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 589s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 589s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 589s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 589s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 589s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 589s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 589s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 589s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 589s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 589s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 589s Get:25 http://ftpmaster.internal/ubuntu questing/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 589s Get:26 http://ftpmaster.internal/ubuntu questing/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB] 589s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 589s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 589s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 589s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 589s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 589s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 589s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 589s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 589s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 589s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 589s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 589s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 589s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 python3-all arm64 3.13.3-1 [880 B] 589s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 589s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 589s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 python3-cairo arm64 1.27.0-2 [122 kB] 589s Get:43 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 589s Get:44 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 589s Get:45 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-reportlab all 4.3.1-1 [1137 kB] 589s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 xml-core all 0.19 [20.3 kB] 589s Get:47 http://ftpmaster.internal/ubuntu questing/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 589s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-biopython arm64 1.85+dfsg-2build1 [1711 kB] 589s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB] 589s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 python3-six all 1.17.0-1 [13.2 kB] 589s Get:51 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pysam arm64 0.23.0+ds-1build1 [3621 kB] 589s Get:52 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pybedtools arm64 0.10.0-4build1 [12.2 MB] 590s Get:53 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pytz all 2025.1-3 [162 kB] 590s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tz all 2025.1-3 [1866 B] 590s Get:55 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-8build1 [4586 kB] 590s Get:56 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 590s Get:57 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-mirtop all 0.4.28-3 [61.7 kB] 591s Fetched 51.2 MB in 3s (15.5 MB/s) 591s Selecting previously unselected package python3-numpy-dev:arm64. 591s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117821 files and directories currently installed.) 591s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 591s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 591s Selecting previously unselected package libblas3:arm64. 591s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 591s Unpacking libblas3:arm64 (3.12.1-2) ... 591s Selecting previously unselected package libgfortran5:arm64. 591s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 591s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 591s Selecting previously unselected package liblapack3:arm64. 591s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 591s Unpacking liblapack3:arm64 (3.12.1-2) ... 591s Selecting previously unselected package python3-numpy. 591s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 591s Unpacking python3-numpy (1:2.2.3+ds-5) ... 591s Selecting previously unselected package sgml-base. 591s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 591s Unpacking sgml-base (1.31) ... 591s Selecting previously unselected package fonts-dejavu-mono. 591s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 591s Unpacking fonts-dejavu-mono (2.37-8) ... 591s Selecting previously unselected package fonts-dejavu-core. 591s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 592s Unpacking fonts-dejavu-core (2.37-8) ... 592s Selecting previously unselected package libfontenc1:arm64. 592s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 592s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 592s Selecting previously unselected package x11-common. 592s Preparing to unpack .../09-x11-common_1%3a7.7+23ubuntu4_all.deb ... 592s Unpacking x11-common (1:7.7+23ubuntu4) ... 592s Selecting previously unselected package xfonts-encodings. 592s Preparing to unpack .../10-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 592s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 592s Selecting previously unselected package xfonts-utils. 592s Preparing to unpack .../11-xfonts-utils_1%3a7.7+7_arm64.deb ... 592s Unpacking xfonts-utils (1:7.7+7) ... 592s Selecting previously unselected package fonts-urw-base35. 592s Preparing to unpack .../12-fonts-urw-base35_20200910-8_all.deb ... 592s Unpacking fonts-urw-base35 (20200910-8) ... 592s Selecting previously unselected package fontconfig-config. 592s Preparing to unpack .../13-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 592s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 592s Selecting previously unselected package libfontconfig1:arm64. 592s Preparing to unpack .../14-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 592s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 592s Selecting previously unselected package libpixman-1-0:arm64. 592s Preparing to unpack .../15-libpixman-1-0_0.44.0-3_arm64.deb ... 592s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 592s Selecting previously unselected package libxcb-render0:arm64. 593s Preparing to unpack .../16-libxcb-render0_1.17.0-2_arm64.deb ... 593s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 593s Selecting previously unselected package libxcb-shm0:arm64. 593s Preparing to unpack .../17-libxcb-shm0_1.17.0-2_arm64.deb ... 593s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 593s Selecting previously unselected package libxrender1:arm64. 593s Preparing to unpack .../18-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 593s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 593s Selecting previously unselected package libcairo2:arm64. 593s Preparing to unpack .../19-libcairo2_1.18.4-1_arm64.deb ... 593s Unpacking libcairo2:arm64 (1.18.4-1) ... 593s Selecting previously unselected package libdeflate0:arm64. 593s Preparing to unpack .../20-libdeflate0_1.23-1_arm64.deb ... 593s Unpacking libdeflate0:arm64 (1.23-1) ... 593s Selecting previously unselected package libgomp1:arm64. 593s Preparing to unpack .../21-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 593s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 593s Selecting previously unselected package libgraphite2-3:arm64. 593s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 593s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 593s Selecting previously unselected package libharfbuzz0b:arm64. 593s Preparing to unpack .../23-libharfbuzz0b_10.2.0-1_arm64.deb ... 593s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 593s Selecting previously unselected package libhtscodecs2:arm64. 593s Preparing to unpack .../24-libhtscodecs2_1.6.1-2_arm64.deb ... 593s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 593s Selecting previously unselected package libhts3t64:arm64. 593s Preparing to unpack .../25-libhts3t64_1.21+ds-1_arm64.deb ... 593s Unpacking libhts3t64:arm64 (1.21+ds-1) ... 593s Selecting previously unselected package libimagequant0:arm64. 593s Preparing to unpack .../26-libimagequant0_2.18.0-1build1_arm64.deb ... 593s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 593s Selecting previously unselected package libjpeg-turbo8:arm64. 593s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 593s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 593s Selecting previously unselected package libjpeg8:arm64. 593s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_arm64.deb ... 593s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 593s Selecting previously unselected package liblcms2-2:arm64. 593s Preparing to unpack .../29-liblcms2-2_2.16-2_arm64.deb ... 593s Unpacking liblcms2-2:arm64 (2.16-2) ... 593s Selecting previously unselected package liblerc4:arm64. 593s Preparing to unpack .../30-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 593s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 593s Selecting previously unselected package libraqm0:arm64. 593s Preparing to unpack .../31-libraqm0_0.10.2-1_arm64.deb ... 593s Unpacking libraqm0:arm64 (0.10.2-1) ... 593s Selecting previously unselected package libsharpyuv0:arm64. 593s Preparing to unpack .../32-libsharpyuv0_1.5.0-0.1_arm64.deb ... 593s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 593s Selecting previously unselected package libjbig0:arm64. 593s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 593s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 593s Selecting previously unselected package libwebp7:arm64. 593s Preparing to unpack .../34-libwebp7_1.5.0-0.1_arm64.deb ... 593s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 593s Selecting previously unselected package libtiff6:arm64. 593s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 593s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 593s Selecting previously unselected package libwebpdemux2:arm64. 594s Preparing to unpack .../36-libwebpdemux2_1.5.0-0.1_arm64.deb ... 594s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 594s Selecting previously unselected package libwebpmux3:arm64. 594s Preparing to unpack .../37-libwebpmux3_1.5.0-0.1_arm64.deb ... 594s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 594s Selecting previously unselected package python3-all. 594s Preparing to unpack .../38-python3-all_3.13.3-1_arm64.deb ... 594s Unpacking python3-all (3.13.3-1) ... 594s Selecting previously unselected package libopenjp2-7:arm64. 594s Preparing to unpack .../39-libopenjp2-7_2.5.3-2_arm64.deb ... 594s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 594s Selecting previously unselected package python3-pil:arm64. 594s Preparing to unpack .../40-python3-pil_11.1.0-5build1_arm64.deb ... 594s Unpacking python3-pil:arm64 (11.1.0-5build1) ... 594s Selecting previously unselected package python3-cairo. 594s Preparing to unpack .../41-python3-cairo_1.27.0-2_arm64.deb ... 594s Unpacking python3-cairo (1.27.0-2) ... 594s Selecting previously unselected package python3-freetype. 594s Preparing to unpack .../42-python3-freetype_2.5.1-1_all.deb ... 594s Unpacking python3-freetype (2.5.1-1) ... 594s Selecting previously unselected package python3-rlpycairo. 594s Preparing to unpack .../43-python3-rlpycairo_0.3.0-3_all.deb ... 594s Unpacking python3-rlpycairo (0.3.0-3) ... 594s Selecting previously unselected package python3-reportlab. 594s Preparing to unpack .../44-python3-reportlab_4.3.1-1_all.deb ... 594s Unpacking python3-reportlab (4.3.1-1) ... 594s Selecting previously unselected package xml-core. 594s Preparing to unpack .../45-xml-core_0.19_all.deb ... 594s Unpacking xml-core (0.19) ... 594s Selecting previously unselected package w3c-sgml-lib. 594s Preparing to unpack .../46-w3c-sgml-lib_1.3-3_all.deb ... 594s Unpacking w3c-sgml-lib (1.3-3) ... 594s Selecting previously unselected package python3-biopython. 594s Preparing to unpack .../47-python3-biopython_1.85+dfsg-2build1_arm64.deb ... 594s Unpacking python3-biopython (1.85+dfsg-2build1) ... 594s Selecting previously unselected package python3-dateutil. 594s Preparing to unpack .../48-python3-dateutil_2.9.0-4_all.deb ... 594s Unpacking python3-dateutil (2.9.0-4) ... 594s Selecting previously unselected package python3-six. 594s Preparing to unpack .../49-python3-six_1.17.0-1_all.deb ... 594s Unpacking python3-six (1.17.0-1) ... 594s Selecting previously unselected package python3-pysam. 594s Preparing to unpack .../50-python3-pysam_0.23.0+ds-1build1_arm64.deb ... 594s Unpacking python3-pysam (0.23.0+ds-1build1) ... 595s Selecting previously unselected package python3-pybedtools. 595s Preparing to unpack .../51-python3-pybedtools_0.10.0-4build1_arm64.deb ... 595s Unpacking python3-pybedtools (0.10.0-4build1) ... 595s Selecting previously unselected package python3-pytz. 595s Preparing to unpack .../52-python3-pytz_2025.1-3_all.deb ... 595s Unpacking python3-pytz (2025.1-3) ... 595s Selecting previously unselected package python3-tz. 595s Preparing to unpack .../53-python3-tz_2025.1-3_all.deb ... 595s Unpacking python3-tz (2025.1-3) ... 595s Selecting previously unselected package python3-pandas-lib:arm64. 595s Preparing to unpack .../54-python3-pandas-lib_2.2.3+dfsg-8build1_arm64.deb ... 595s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-8build1) ... 595s Selecting previously unselected package python3-pandas. 595s Preparing to unpack .../55-python3-pandas_2.2.3+dfsg-8build1_all.deb ... 595s Unpacking python3-pandas (2.2.3+dfsg-8build1) ... 595s Selecting previously unselected package python3-mirtop. 595s Preparing to unpack .../56-python3-mirtop_0.4.28-3_all.deb ... 595s Unpacking python3-mirtop (0.4.28-3) ... 595s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 595s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 595s Setting up liblcms2-2:arm64 (2.16-2) ... 595s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 595s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 595s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 595s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 595s Setting up libxcb-render0:arm64 (1.17.0-2) ... 595s Setting up x11-common (1:7.7+23ubuntu4) ... 596s Setting up libdeflate0:arm64 (1.23-1) ... 596s Setting up python3-all (3.13.3-1) ... 596s Setting up python3-pytz (2025.1-3) ... 596s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 596s Setting up libgomp1:arm64 (15-20250404-0ubuntu1) ... 596s Setting up python3-freetype (2.5.1-1) ... 596s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 596s Setting up python3-tz (2025.1-3) ... 596s Setting up python3-six (1.17.0-1) ... 596s Setting up libfontenc1:arm64 (1:1.1.8-1build1) ... 596s Setting up libblas3:arm64 (3.12.1-2) ... 596s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 596s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 596s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 596s Setting up fonts-dejavu-mono (2.37-8) ... 596s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 596s Setting up fonts-dejavu-core (2.37-8) ... 596s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 596s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 596s Setting up libwebp7:arm64 (1.5.0-0.1) ... 596s Setting up libhts3t64:arm64 (1.21+ds-1) ... 596s Setting up libopenjp2-7:arm64 (2.5.3-2) ... 596s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 596s Setting up python3-dateutil (2.9.0-4) ... 596s Setting up sgml-base (1.31) ... 596s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 596s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 596s Setting up liblapack3:arm64 (3.12.1-2) ... 596s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 596s Setting up python3-pysam (0.23.0+ds-1build1) ... 596s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 597s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 597s Setting up xfonts-utils (1:7.7+7) ... 597s Setting up libraqm0:arm64 (0.10.2-1) ... 597s Setting up python3-numpy (1:2.2.3+ds-5) ... 599s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 599s Setting up xml-core (0.19) ... 599s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 599s Setting up python3-pybedtools (0.10.0-4build1) ... 599s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-8build1) ... 599s Setting up fonts-urw-base35 (20200910-8) ... 599s Setting up libcairo2:arm64 (1.18.4-1) ... 599s Setting up python3-pil:arm64 (11.1.0-5build1) ... 600s Setting up python3-pandas (2.2.3+dfsg-8build1) ... 605s Setting up python3-cairo (1.27.0-2) ... 605s Setting up python3-rlpycairo (0.3.0-3) ... 605s Setting up python3-reportlab (4.3.1-1) ... 606s Processing triggers for libc-bin (2.41-6ubuntu1) ... 606s Processing triggers for man-db (2.13.0-1) ... 607s Processing triggers for sgml-base (1.31) ... 607s Setting up w3c-sgml-lib (1.3-3) ... 635s Setting up python3-biopython (1.85+dfsg-2build1) ... 636s Setting up python3-mirtop (0.4.28-3) ... 638s autopkgtest [13:30:54]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import mirtop; print(mirtop)" ; done 638s autopkgtest [13:30:54]: test autodep8-python3: [----------------------- 639s Testing with python3.13: 639s 639s autopkgtest [13:30:55]: test autodep8-python3: -----------------------] 640s autopkgtest [13:30:56]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 640s autodep8-python3 PASS (superficial) 640s autopkgtest [13:30:56]: @@@@@@@@@@@@@@@@@@@@ summary 640s run-unit-test PASS 640s autodep8-python3 PASS (superficial) 645s nova [W] Using flock in prodstack6-arm64 645s Creating nova instance adt-questing-arm64-mirtop-20250502-132016-juju-7f2275-prod-proposed-migration-environment-21-b0cfc2af-1e0f-41ec-8b96-7eee9a39d337 from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)... 645s nova [W] Timed out waiting for 1bfe2715-c501-49e8-95d7-775cc982ddb2 to get deleted. 645s nova [W] Using flock in prodstack6-arm64 645s Creating nova instance adt-questing-arm64-mirtop-20250502-132016-juju-7f2275-prod-proposed-migration-environment-21-b0cfc2af-1e0f-41ec-8b96-7eee9a39d337 from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)... 645s nova [W] Timed out waiting for 960ec159-6b1e-4304-a785-7b6ecca09c02 to get deleted.