0s autopkgtest [10:37:43]: starting date and time: 2025-05-02 10:37:43+0000 0s autopkgtest [10:37:43]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [10:37:43]: host juju-7f2275-prod-proposed-migration-environment-21; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ldxjqlyz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:mpich --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mpich/4.3.0-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-21@bos03-arm64-17.secgroup --name adt-questing-arm64-lammps-20250502-103742-juju-7f2275-prod-proposed-migration-environment-21-5c0915ed-228b-43ae-9a6f-548fbd40126f --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-21 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 108s autopkgtest [10:39:31]: testbed dpkg architecture: arm64 108s autopkgtest [10:39:31]: testbed apt version: 3.0.0 109s autopkgtest [10:39:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 109s autopkgtest [10:39:32]: testbed release detected to be: None 110s autopkgtest [10:39:33]: updating testbed package index (apt update) 110s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 110s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 110s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 111s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 111s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 111s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB] 111s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB] 111s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [219 kB] 111s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1509 kB] 111s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 111s Fetched 4149 kB in 1s (3196 kB/s) 112s Reading package lists... 113s autopkgtest [10:39:36]: upgrading testbed (apt dist-upgrade and autopurge) 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 114s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 114s Starting 2 pkgProblemResolver with broken count: 0 114s Done 115s Entering ResolveByKeep 115s 115s Calculating upgrade... 116s The following packages will be upgraded: 116s htop mtd-utils nano 116s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Need to get 936 kB of archives. 116s After this operation, 727 kB of additional disk space will be used. 116s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 116s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 116s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 117s Fetched 936 kB in 1s (1648 kB/s) 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 117s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 117s Unpacking nano (8.4-1) over (8.3-1) ... 117s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 117s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 117s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 117s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 117s Setting up htop (3.4.1-4) ... 117s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 117s Setting up nano (8.4-1) ... 117s Installing new version of config file /etc/nanorc ... 117s Processing triggers for man-db (2.13.0-1) ... 119s Processing triggers for install-info (7.1.1-1) ... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Starting pkgProblemResolver with broken count: 0 120s Starting 2 pkgProblemResolver with broken count: 0 120s Done 120s Solving dependencies... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [10:39:46]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 124s autopkgtest [10:39:47]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 135s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 135s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 135s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 136s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 136s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 136s gpgv: Can't check signature: No public key 136s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 142s autopkgtest [10:40:05]: testing package lammps version 20240207+dfsg-3build3 143s autopkgtest [10:40:06]: build not needed 163s autopkgtest [10:40:26]: test crack: preparing testbed 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 164s Starting pkgProblemResolver with broken count: 0 164s Starting 2 pkgProblemResolver with broken count: 0 164s Done 165s The following NEW packages will be installed: 165s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 165s libaec0 libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdeflate0 165s libdouble-conversion3 libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 165s libfontconfig1 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 165s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 165s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 165s libibmad5 libibumad3 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26 165s libkim-api2 liblammps0t64 liblapack3 liblerc4 libllvm17t64 libmunge2 165s libnetcdf22 libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 165s libpmix2t64 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 165s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 165s libtk8.6 libucx0 libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 165s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 165s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 165s libxrender1 libxshmfence1 libxss1 libxxf86vm1 mesa-libgallium 165s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 165s x11-common 165s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 165s Need to get 127 MB of archives. 165s After this operation, 575 MB of additional disk space will be used. 165s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 165s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 165s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 165s Get:4 http://ftpmaster.internal/ubuntu questing/universe arm64 lammps-data all 20240207+dfsg-3build3 [9732 kB] 166s Get:5 http://ftpmaster.internal/ubuntu questing/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 166s Get:6 http://ftpmaster.internal/ubuntu questing/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 167s Get:7 http://ftpmaster.internal/ubuntu questing/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 167s Get:8 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 167s Get:9 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 167s Get:10 http://ftpmaster.internal/ubuntu questing/universe arm64 libamdhip64-5 arm64 5.7.1-5build1 [9707 kB] 168s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 168s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 168s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 168s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 168s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 168s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 168s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 168s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 168s Get:19 http://ftpmaster.internal/ubuntu questing/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 168s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 168s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 librdmacm1t64 arm64 56.0-4ubuntu1 [71.4 kB] 168s Get:22 http://ftpmaster.internal/ubuntu questing/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 168s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 168s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 168s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 168s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 168s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 168s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 168s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 168s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 168s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 168s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 168s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 mesa-libgallium arm64 25.0.3-1ubuntu2 [9455 kB] 168s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libgbm1 arm64 25.0.3-1ubuntu2 [33.7 kB] 168s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 168s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 168s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1-mesa-dri arm64 25.0.3-1ubuntu2 [35.4 kB] 168s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 168s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 168s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 168s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 libglx-mesa0 arm64 25.0.3-1ubuntu2 [151 kB] 168s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 168s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 168s Get:44 http://ftpmaster.internal/ubuntu questing/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 168s Get:45 http://ftpmaster.internal/ubuntu questing/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 168s Get:46 http://ftpmaster.internal/ubuntu questing/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 168s Get:47 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 168s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 168s Get:49 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 168s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 168s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 168s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 168s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 168s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 168s Get:55 http://ftpmaster.internal/ubuntu questing/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 168s Get:56 http://ftpmaster.internal/ubuntu questing/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 168s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 168s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 168s Get:59 http://ftpmaster.internal/ubuntu questing/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 168s Get:60 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 168s Get:61 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 168s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 libibumad3 arm64 56.0-4ubuntu1 [31.3 kB] 168s Get:63 http://ftpmaster.internal/ubuntu questing/main arm64 libibmad5 arm64 56.0-4ubuntu1 [44.1 kB] 168s Get:64 http://ftpmaster.internal/ubuntu questing/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 168s Get:65 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 168s Get:66 http://ftpmaster.internal/ubuntu questing/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 168s Get:67 http://ftpmaster.internal/ubuntu questing/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 168s Get:68 http://ftpmaster.internal/ubuntu questing/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 168s Get:69 http://ftpmaster.internal/ubuntu questing/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 168s Get:70 http://ftpmaster.internal/ubuntu questing/universe arm64 proj-data all 9.5.1-1 [7924 kB] 169s Get:71 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 169s Get:72 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 169s Get:73 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 169s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 169s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 169s Get:76 http://ftpmaster.internal/ubuntu questing/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 169s Get:77 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 169s Get:78 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 169s Get:79 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 169s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 169s Get:81 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 169s Get:82 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 169s Get:83 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 169s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 169s Get:85 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 169s Get:86 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 169s Get:87 http://ftpmaster.internal/ubuntu questing/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu1 [24.0 MB] 170s Get:88 http://ftpmaster.internal/ubuntu questing/universe arm64 liblammps0t64 arm64 20240207+dfsg-3build3 [6834 kB] 170s Get:89 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 170s Get:90 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 170s Get:91 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 170s Get:92 http://ftpmaster.internal/ubuntu questing/universe arm64 lammps arm64 20240207+dfsg-3build3 [15.1 kB] 171s Fetched 127 MB in 5s (24.2 MB/s) 171s Selecting previously unselected package fonts-dejavu-mono. 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117821 files and directories currently installed.) 171s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 171s Unpacking fonts-dejavu-mono (2.37-8) ... 171s Selecting previously unselected package fonts-dejavu-core. 171s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 171s Unpacking fonts-dejavu-core (2.37-8) ... 171s Selecting previously unselected package fontconfig-config. 171s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 171s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 171s Selecting previously unselected package lammps-data. 171s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 171s Unpacking lammps-data (20240207+dfsg-3build3) ... 171s Selecting previously unselected package libaec0:arm64. 171s Preparing to unpack .../04-libaec0_1.1.3-1_arm64.deb ... 171s Unpacking libaec0:arm64 (1.1.3-1) ... 171s Selecting previously unselected package libllvm17t64:arm64. 171s Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 171s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 172s Selecting previously unselected package libamd-comgr2:arm64. 172s Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 172s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 172s Selecting previously unselected package libhsakmt1:arm64. 173s Preparing to unpack .../07-libhsakmt1_5.7.0-1build1_arm64.deb ... 173s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 173s Selecting previously unselected package libhsa-runtime64-1. 173s Preparing to unpack .../08-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 173s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 173s Selecting previously unselected package libamdhip64-5. 173s Preparing to unpack .../09-libamdhip64-5_5.7.1-5build1_arm64.deb ... 173s Unpacking libamdhip64-5 (5.7.1-5build1) ... 173s Selecting previously unselected package libblas3:arm64. 173s Preparing to unpack .../10-libblas3_3.12.1-2_arm64.deb ... 173s Unpacking libblas3:arm64 (3.12.1-2) ... 173s Selecting previously unselected package libfontconfig1:arm64. 173s Preparing to unpack .../11-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 173s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 173s Selecting previously unselected package libpixman-1-0:arm64. 173s Preparing to unpack .../12-libpixman-1-0_0.44.0-3_arm64.deb ... 173s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 173s Selecting previously unselected package libxcb-render0:arm64. 173s Preparing to unpack .../13-libxcb-render0_1.17.0-2_arm64.deb ... 173s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 173s Selecting previously unselected package libxcb-shm0:arm64. 173s Preparing to unpack .../14-libxcb-shm0_1.17.0-2_arm64.deb ... 173s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 173s Selecting previously unselected package libxrender1:arm64. 173s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 173s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 173s Selecting previously unselected package libcairo2:arm64. 173s Preparing to unpack .../16-libcairo2_1.18.4-1_arm64.deb ... 173s Unpacking libcairo2:arm64 (1.18.4-1) ... 173s Selecting previously unselected package libdeflate0:arm64. 173s Preparing to unpack .../17-libdeflate0_1.23-1_arm64.deb ... 173s Unpacking libdeflate0:arm64 (1.23-1) ... 173s Selecting previously unselected package libdouble-conversion3:arm64. 173s Preparing to unpack .../18-libdouble-conversion3_3.3.1-1_arm64.deb ... 173s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 173s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 173s Preparing to unpack .../19-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 173s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 173s Selecting previously unselected package librdmacm1t64:arm64. 173s Preparing to unpack .../20-librdmacm1t64_56.0-4ubuntu1_arm64.deb ... 173s Unpacking librdmacm1t64:arm64 (56.0-4ubuntu1) ... 173s Selecting previously unselected package libfabric1:arm64. 173s Preparing to unpack .../21-libfabric1_1.17.0-3.1_arm64.deb ... 173s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 173s Selecting previously unselected package libgomp1:arm64. 173s Preparing to unpack .../22-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 173s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 173s Selecting previously unselected package libfftw3-double3:arm64. 173s Preparing to unpack .../23-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 173s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 174s Selecting previously unselected package libwayland-server0:arm64. 174s Preparing to unpack .../24-libwayland-server0_1.23.1-3_arm64.deb ... 174s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 174s Selecting previously unselected package libx11-xcb1:arm64. 174s Preparing to unpack .../25-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 174s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 174s Selecting previously unselected package libxcb-dri3-0:arm64. 174s Preparing to unpack .../26-libxcb-dri3-0_1.17.0-2_arm64.deb ... 174s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 174s Selecting previously unselected package libxcb-present0:arm64. 174s Preparing to unpack .../27-libxcb-present0_1.17.0-2_arm64.deb ... 174s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 174s Selecting previously unselected package libxcb-randr0:arm64. 174s Preparing to unpack .../28-libxcb-randr0_1.17.0-2_arm64.deb ... 174s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 174s Selecting previously unselected package libxcb-sync1:arm64. 174s Preparing to unpack .../29-libxcb-sync1_1.17.0-2_arm64.deb ... 174s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 174s Selecting previously unselected package libxcb-xfixes0:arm64. 174s Preparing to unpack .../30-libxcb-xfixes0_1.17.0-2_arm64.deb ... 174s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 174s Selecting previously unselected package libxshmfence1:arm64. 174s Preparing to unpack .../31-libxshmfence1_1.3-1build5_arm64.deb ... 174s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 174s Selecting previously unselected package mesa-libgallium:arm64. 174s Preparing to unpack .../32-mesa-libgallium_25.0.3-1ubuntu2_arm64.deb ... 174s Unpacking mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 174s Selecting previously unselected package libgbm1:arm64. 174s Preparing to unpack .../33-libgbm1_25.0.3-1ubuntu2_arm64.deb ... 174s Unpacking libgbm1:arm64 (25.0.3-1ubuntu2) ... 174s Selecting previously unselected package libgfortran5:arm64. 174s Preparing to unpack .../34-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 174s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 174s Selecting previously unselected package libvulkan1:arm64. 174s Preparing to unpack .../35-libvulkan1_1.4.304.0-1_arm64.deb ... 174s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 174s Selecting previously unselected package libgl1-mesa-dri:arm64. 174s Preparing to unpack .../36-libgl1-mesa-dri_25.0.3-1ubuntu2_arm64.deb ... 174s Unpacking libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 174s Selecting previously unselected package libglvnd0:arm64. 174s Preparing to unpack .../37-libglvnd0_1.7.0-1build1_arm64.deb ... 174s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 174s Selecting previously unselected package libxcb-glx0:arm64. 174s Preparing to unpack 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(1.4.2+dfsg1-2build1) ... 175s Selecting previously unselected package libglew2.2:arm64. 175s Preparing to unpack .../44-libglew2.2_2.2.0-4build1_arm64.deb ... 175s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 175s Selecting previously unselected package libsz2:arm64. 175s Preparing to unpack .../45-libsz2_1.1.3-1_arm64.deb ... 175s Unpacking libsz2:arm64 (1.1.3-1) ... 175s Selecting previously unselected package libhdf5-310:arm64. 175s Preparing to unpack .../46-libhdf5-310_1.14.5+repack-3_arm64.deb ... 175s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 175s Selecting previously unselected package libhdf5-hl-310:arm64. 175s Preparing to unpack .../47-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 175s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 175s Selecting previously unselected package libhwloc15:arm64. 175s Preparing to unpack .../48-libhwloc15_2.12.0-1_arm64.deb ... 175s Unpacking libhwloc15:arm64 (2.12.0-1) ... 175s Selecting previously unselected package libjpeg-turbo8:arm64. 175s Preparing to unpack .../49-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 175s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 175s Selecting previously unselected package libjpeg8:arm64. 175s Preparing to unpack .../50-libjpeg8_8c-2ubuntu11_arm64.deb ... 175s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 175s Selecting previously unselected package libjsoncpp26:arm64. 175s Preparing to unpack .../51-libjsoncpp26_1.9.6-3_arm64.deb ... 175s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 175s Selecting previously unselected package libkim-api2:arm64. 175s Preparing to unpack .../52-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 175s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 175s Selecting previously unselected package liblapack3:arm64. 175s Preparing to unpack .../53-liblapack3_3.12.1-2_arm64.deb ... 175s Unpacking liblapack3:arm64 (3.12.1-2) ... 175s Selecting previously unselected package libnetcdf22:arm64. 175s Preparing to unpack .../54-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 175s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 175s Selecting previously unselected package libmunge2:arm64. 175s Preparing to unpack .../55-libmunge2_0.5.16-1_arm64.deb ... 175s Unpacking libmunge2:arm64 (0.5.16-1) ... 175s Selecting previously unselected package libpciaccess0:arm64. 175s Preparing to unpack .../56-libpciaccess0_0.17-3build1_arm64.deb ... 175s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 175s Selecting previously unselected package libxnvctrl0:arm64. 176s Preparing to unpack .../57-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 176s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 176s Selecting previously unselected package ocl-icd-libopencl1:arm64. 176s Preparing to unpack .../58-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 176s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 176s Selecting previously unselected package libhwloc-plugins:arm64. 176s Preparing to unpack .../59-libhwloc-plugins_2.12.0-1_arm64.deb ... 176s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 176s Selecting previously unselected package libpmix2t64:arm64. 176s Preparing to unpack .../60-libpmix2t64_5.0.6-5_arm64.deb ... 176s Unpacking libpmix2t64:arm64 (5.0.6-5) ... 176s Selecting previously unselected package libibumad3:arm64. 176s Preparing to unpack .../61-libibumad3_56.0-4ubuntu1_arm64.deb ... 176s Unpacking libibumad3:arm64 (56.0-4ubuntu1) ... 176s Selecting previously unselected package libibmad5:arm64. 176s Preparing to unpack .../62-libibmad5_56.0-4ubuntu1_arm64.deb ... 176s Unpacking libibmad5:arm64 (56.0-4ubuntu1) ... 176s Selecting previously unselected package libucx0:arm64. 176s Preparing to unpack .../63-libucx0_1.18.1+ds-2_arm64.deb ... 176s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 176s Selecting previously unselected package libopenmpi40:arm64. 176s Preparing to unpack .../64-libopenmpi40_5.0.7-1_arm64.deb ... 176s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 176s Selecting previously unselected package libpnetcdf6:arm64. 176s Preparing to unpack .../65-libpnetcdf6_1.14.0-2_arm64.deb ... 176s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 176s Selecting previously unselected package libvoro++1. 176s Preparing to unpack .../66-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 176s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 176s Selecting previously unselected package libogg0:arm64. 176s Preparing to unpack .../67-libogg0_1.3.5-3build1_arm64.deb ... 176s Unpacking libogg0:arm64 (1.3.5-3build1) ... 176s Selecting previously unselected package libopengl0:arm64. 176s Preparing to unpack .../68-libopengl0_1.7.0-1build1_arm64.deb ... 176s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 176s Selecting previously unselected package proj-data. 176s Preparing to unpack .../69-proj-data_9.5.1-1_all.deb ... 176s Unpacking proj-data (9.5.1-1) ... 176s Selecting previously unselected package libjbig0:arm64. 176s Preparing to unpack .../70-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 176s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 176s Selecting previously unselected package liblerc4:arm64. 176s Preparing to unpack .../71-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 176s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 176s Selecting previously unselected package libsharpyuv0:arm64. 176s Preparing to unpack .../72-libsharpyuv0_1.5.0-0.1_arm64.deb ... 176s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 176s Selecting previously unselected package libwebp7:arm64. 176s Preparing to unpack .../73-libwebp7_1.5.0-0.1_arm64.deb ... 176s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 177s Selecting previously unselected package libtiff6:arm64. 177s Preparing to unpack .../74-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 177s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 177s Selecting previously unselected package libproj25:arm64. 177s Preparing to unpack .../75-libproj25_9.5.1-1_arm64.deb ... 177s Unpacking libproj25:arm64 (9.5.1-1) ... 177s Selecting previously unselected package libtbbbind-2-5:arm64. 177s Preparing to unpack .../76-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 177s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 177s Selecting previously unselected package libtbbmalloc2:arm64. 177s Preparing to unpack .../77-libtbbmalloc2_2022.0.0-2_arm64.deb ... 177s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 177s Selecting previously unselected package libtbb12:arm64. 177s Preparing to unpack .../78-libtbb12_2022.0.0-2_arm64.deb ... 177s Unpacking libtbb12:arm64 (2022.0.0-2) ... 177s Selecting previously unselected package libtcl8.6:arm64. 177s Preparing to unpack .../79-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 177s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 177s Selecting previously unselected package libtheoradec1:arm64. 177s Preparing to unpack .../80-libtheoradec1_1.2.0~alpha1+dfsg-6_arm64.deb ... 177s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 177s Selecting previously unselected package libtheoraenc1:arm64. 177s Preparing to unpack .../81-libtheoraenc1_1.2.0~alpha1+dfsg-6_arm64.deb ... 177s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 177s Selecting previously unselected package libxft2:arm64. 177s Preparing to unpack .../82-libxft2_2.3.6-1build1_arm64.deb ... 177s Unpacking libxft2:arm64 (2.3.6-1build1) ... 177s Selecting previously unselected package x11-common. 177s Preparing to unpack .../83-x11-common_1%3a7.7+23ubuntu4_all.deb ... 177s Unpacking x11-common (1:7.7+23ubuntu4) ... 177s Selecting previously unselected package libxss1:arm64. 177s Preparing to unpack .../84-libxss1_1%3a1.2.3-1build3_arm64.deb ... 177s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 177s Selecting previously unselected package libtk8.6:arm64. 177s Preparing to unpack .../85-libtk8.6_8.6.16-1_arm64.deb ... 177s Unpacking libtk8.6:arm64 (8.6.16-1) ... 177s Selecting previously unselected package libvtk9.3:arm64. 177s Preparing to unpack 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(20240207+dfsg-3build3) ... 178s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... 178s Setting up libtbbmalloc2:arm64 (2022.0.0-2) ... 178s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 178s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 178s Setting up libwayland-server0:arm64 (1.23.1-3) ... 178s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... 178s Setting up libpciaccess0:arm64 (0.17-3build1) ... 178s Setting up libdouble-conversion3:arm64 (3.3.1-1) ... 178s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ... 178s Setting up libogg0:arm64 (1.3.5-3build1) ... 178s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 178s Setting up proj-data (9.5.1-1) ... 178s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 178s Setting up lammps-data (20240207+dfsg-3build3) ... 178s Setting up libxcb-render0:arm64 (1.17.0-2) ... 178s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 178s Setting up libglvnd0:arm64 (1.7.0-1build1) ... 178s Setting up libxcb-glx0:arm64 (1.17.0-2) ... 178s Setting up x11-common (1:7.7+23ubuntu4) ... 179s Setting up libibumad3:arm64 (56.0-4ubuntu1) ... 179s Setting up libdeflate0:arm64 (1.23-1) ... 179s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 179s Setting up libibmad5:arm64 (56.0-4ubuntu1) ... 179s Setting up libgomp1:arm64 (15-20250404-0ubuntu1) ... 179s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 179s Setting up libaec0:arm64 (1.1.3-1) ... 179s Setting up libopengl0:arm64 (1.7.0-1build1) ... 179s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 179s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 179s Setting up libxcb-present0:arm64 (1.17.0-2) ... 179s Setting up libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 179s Setting up libblas3:arm64 (3.12.1-2) ... 179s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 179s Setting up libmunge2:arm64 (0.5.16-1) ... 179s Setting up libllvm17t64:arm64 (1:17.0.6-21) ... 179s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 179s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 179s Setting up fonts-dejavu-mono (2.37-8) ... 179s Setting up libhwloc15:arm64 (2.12.0-1) ... 179s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 179s Setting up fonts-dejavu-core (2.37-8) ... 179s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 179s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 179s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 179s Setting up libvulkan1:arm64 (1.4.304.0-1) ... 179s Setting up libwebp7:arm64 (1.5.0-0.1) ... 179s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 179s Setting up libxshmfence1:arm64 (1.3-1build5) ... 179s Setting up libxcb-randr0:arm64 (1.17.0-2) ... 179s Setting up openmpi-common (5.0.7-1) ... 179s Setting up librdmacm1t64:arm64 (56.0-4ubuntu1) ... 179s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 179s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 179s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 179s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 179s Setting up libsz2:arm64 (1.1.3-1) ... 179s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 179s Setting up libfabric1:arm64 (1.17.0-3.1) ... 179s Setting up mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 179s Setting up liblapack3:arm64 (3.12.1-2) ... 179s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 179s Setting up libgbm1:arm64 (25.0.3-1ubuntu2) ... 179s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 179s Setting up libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 179s Setting up libkim-api2:arm64 (2.3.0-1ubuntu1) ... 179s Setting up libhwloc-plugins:arm64 (2.12.0-1) ... 179s Setting up libtbbbind-2-5:arm64 (2022.0.0-2) ... 179s Setting up libpmix2t64:arm64 (5.0.6-5) ... 179s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 179s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 179s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 179s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 179s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 179s Setting up libxft2:arm64 (2.3.6-1build1) ... 179s Setting up libglx-mesa0:arm64 (25.0.3-1ubuntu2) ... 179s Setting up libglx0:arm64 (1.7.0-1build1) ... 179s Setting up libproj25:arm64 (9.5.1-1) ... 179s Setting up libtk8.6:arm64 (8.6.16-1) ... 179s Setting up libnetcdf22:arm64 (1:4.9.3-1) ... 179s Setting up libtbb12:arm64 (2022.0.0-2) ... 179s Setting up libcairo2:arm64 (1.18.4-1) ... 179s Setting up libgl1:arm64 (1.7.0-1build1) ... 179s Setting up libamdhip64-5 (5.7.1-5build1) ... 179s Setting up libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 179s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 179s Setting up libucx0:arm64 (1.18.1+ds-2) ... 179s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 179s Setting up libopenmpi40:arm64 (5.0.7-1) ... 179s Setting up libpnetcdf6:arm64 (1.14.0-2) ... 179s Setting up libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 179s Setting up openmpi-bin (5.0.7-1) ... 179s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 179s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 179s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 179s Setting up mpi-default-bin (1.18) ... 179s Setting up liblammps0t64:arm64 (20240207+dfsg-3build3) ... 179s Setting up lammps (20240207+dfsg-3build3) ... 179s Processing triggers for man-db (2.13.0-1) ... 180s Processing triggers for libc-bin (2.41-6ubuntu1) ... 181s autopkgtest [10:40:44]: test crack: [----------------------- 181s LAMMPS (7 Feb 2024 - Update 1) 181s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 181s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 181s using 1 OpenMP thread(s) per MPI task 181s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 181s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 181s 2 by 1 by 1 MPI processor grid 181s Created 8141 atoms 181s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 181s create_atoms CPU = 0.001 seconds 181s 302 atoms in group lower 181s 302 atoms in group upper 181s 604 atoms in group boundary 181s 7537 atoms in group mobile 181s 841 atoms in group leftupper 181s 841 atoms in group leftlower 181s Setting atom values ... 181s 841 settings made for type 181s Setting atom values ... 181s 841 settings made for type 181s Setting atom values ... 181s 302 settings made for type 181s Setting atom values ... 181s 302 settings made for type 181s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 181s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 181s Neighbor list info ... 181s update: every = 1 steps, delay = 5 steps, check = yes 181s max neighbors/atom: 2000, page size: 100000 181s master list distance cutoff = 2.8 181s ghost atom cutoff = 2.8 181s binsize = 1.4, bins = 80 56 1 181s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 181s (1) pair lj/cut, perpetual 181s attributes: half, newton on 181s pair build: half/bin/atomonly/newton 181s stencil: half/bin/2d 181s bin: standard 181s Setting up Verlet run ... 181s Unit style : lj 181s Current step : 0 181s Time step : 0.003 181s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 181s Step Temp E_pair E_mol TotEng Press Volume 181s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 181s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 181s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 181s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 181s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 182s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 182s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 182s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 182s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 182s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 182s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 182s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 182s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 182s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 183s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 183s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 183s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 183s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 183s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 183s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 183s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 183s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 184s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 184s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 184s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 184s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 184s Loop time of 2.81657 on 2 procs for 5000 steps with 8141 atoms 184s 184s Performance: 460133.809 tau/day, 1775.208 timesteps/s, 14.452 Matom-step/s 184s 97.3% CPU use with 2 MPI tasks x 1 OpenMP threads 184s 184s MPI task timing breakdown: 184s Section | min time | avg time | max time |%varavg| %total 184s --------------------------------------------------------------- 184s Pair | 2.172 | 2.1746 | 2.1773 | 0.2 | 77.21 184s Neigh | 0.1079 | 0.11094 | 0.11398 | 0.9 | 3.94 184s Comm | 0.21911 | 0.22056 | 0.22201 | 0.3 | 7.83 184s Output | 0.00090765 | 0.0023764 | 0.0038452 | 3.0 | 0.08 184s Modify | 0.21756 | 0.21918 | 0.2208 | 0.3 | 7.78 184s Other | | 0.08886 | | | 3.15 184s 184s Nlocal: 4070.5 ave 4085 max 4056 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s Nghost: 207 ave 208 max 206 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s Neighs: 35700 ave 35927 max 35473 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s 184s Total # of neighbors = 71400 184s Ave neighs/atom = 8.7704213 184s Neighbor list builds = 106 184s Dangerous builds = 0 184s Total wall time: 0:00:02 184s LAMMPS (7 Feb 2024 - Update 1) 189s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 189s using 1 OpenMP thread(s) per MPI task 189s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 189s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 189s 1 by 1 by 1 MPI processor grid 189s Created 8141 atoms 189s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 189s create_atoms CPU = 0.002 seconds 189s 302 atoms in group lower 189s 302 atoms in group upper 189s 604 atoms in group boundary 189s 7537 atoms in group mobile 189s 841 atoms in group leftupper 189s 841 atoms in group leftlower 189s Setting atom values ... 189s 841 settings made for type 189s Setting atom values ... 189s 841 settings made for type 189s Setting atom values ... 189s 302 settings made for type 189s Setting atom values ... 189s 302 settings made for type 189s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 189s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 189s Neighbor list info ... 189s update: every = 1 steps, delay = 5 steps, check = yes 189s max neighbors/atom: 2000, page size: 100000 189s master list distance cutoff = 2.8 189s ghost atom cutoff = 2.8 189s binsize = 1.4, bins = 80 56 1 189s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 189s (1) pair lj/cut, perpetual 189s attributes: half, newton on 189s pair build: half/bin/atomonly/newton 189s stencil: half/bin/2d 189s bin: standard 189s Setting up Verlet run ... 189s Unit style : lj 189s Current step : 0 189s Time step : 0.003 189s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 189s Step Temp E_pair E_mol TotEng Press Volume 189s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 189s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 189s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 189s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 189s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 189s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 189s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 189s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 189s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 189s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 189s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 189s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 189s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 189s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 189s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 189s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 189s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 189s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 189s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 189s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 189s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 189s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 189s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 189s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 189s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 189s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 189s Loop time of 5.14908 on 1 procs for 5000 steps with 8141 atoms 189s 189s Performance: 251695.341 tau/day, 971.047 timesteps/s, 7.905 Matom-step/s 189s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 189s 189s MPI task timing breakdown: 189s Section | min time | avg time | max time |%varavg| %total 189s --------------------------------------------------------------- 189s Pair | 4.3454 | 4.3454 | 4.3454 | 0.0 | 84.39 189s Neigh | 0.20323 | 0.20323 | 0.20323 | 0.0 | 3.95 189s Comm | 0.0045142 | 0.0045142 | 0.0045142 | 0.0 | 0.09 189s Output | 0.0013146 | 0.0013146 | 0.0013146 | 0.0 | 0.03 189s Modify | 0.44953 | 0.44953 | 0.44953 | 0.0 | 8.73 189s Other | | 0.145 | | | 2.82 189s 189s Nlocal: 8141 ave 8141 max 8141 min 189s Histogram: 1 0 0 0 0 0 0 0 0 0 189s Nghost: 0 ave 0 max 0 min 189s Histogram: 1 0 0 0 0 0 0 0 0 0 189s Neighs: 71389 ave 71389 max 71389 min 189s Histogram: 1 0 0 0 0 0 0 0 0 0 189s 189s Total # of neighbors = 71389 189s Ave neighs/atom = 8.7690701 189s Neighbor list builds = 100 189s Dangerous builds = 0 189s Total wall time: 0:00:05 189s run: OK 190s autopkgtest [10:40:53]: test crack: -----------------------] 190s crack PASS 190s autopkgtest [10:40:53]: test crack: - - - - - - - - - - results - - - - - - - - - - 190s autopkgtest [10:40:53]: test dipole: preparing testbed 191s Reading package lists... 191s Building dependency tree... 191s Reading state information... 191s Starting pkgProblemResolver with broken count: 0 191s Starting 2 pkgProblemResolver with broken count: 0 191s Done 192s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 193s autopkgtest [10:40:56]: test dipole: [----------------------- 193s LAMMPS (7 Feb 2024 - Update 1) 193s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 193s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 193s using 1 OpenMP thread(s) per MPI task 193s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 193s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 193s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 193s 2 by 1 by 1 MPI processor grid 193s Created 200 atoms 193s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 193s create_atoms CPU = 0.001 seconds 193s Setting atom values ... 193s 200 settings made for mass 193s Setting atom values ... 193s 200 settings made for dipole/random 193s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 193s Neighbor list info ... 193s update: every = 1 steps, delay = 0 steps, check = yes 193s max neighbors/atom: 2000, page size: 100000 193s master list distance cutoff = 2.8 193s ghost atom cutoff = 2.8 193s binsize = 1.4, bins = 13 13 2 193s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 193s (1) pair lj/cut/dipole/cut, perpetual 193s attributes: half, newton on 193s pair build: half/bin/atomonly/newton 193s stencil: half/bin/2d 193s bin: standard 193s Setting up Verlet run ... 193s Unit style : lj 193s Current step : 0 193s Time step : 0.005 193s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 193s Step Temp E_pair c_erot TotEng Press 193s 0 0 -2.0965715 0 -2.0965715 -2.4759659 193s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 193s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 193s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 194s 2000 0.44906518 -2.8037483 0.24422519 -2.3569284 0.15010152 194s 2500 0.46056435 -2.8144144 0.25015831 -2.3561529 -0.38358808 194s 3000 0.4348415 -2.7856362 0.24988108 -2.3529689 0.086257242 194s 3500 0.41528069 -2.7415634 0.22418981 -2.3283591 0.13066802 194s 4000 0.40006774 -2.7153553 0.22170678 -2.3172879 -0.17425321 194s 4500 0.45764976 -2.7751555 0.2288386 -2.319794 -0.22228559 194s 5000 0.45119236 -2.7437941 0.21642728 -2.2948577 0.086840364 194s 5500 0.41805158 -2.7191643 0.2405108 -2.303203 -0.20373032 194s 6000 0.41353959 -2.73374 0.26555768 -2.3222681 0.013197521 194s 6500 0.46952638 -2.7206692 0.19356607 -2.2534905 -0.32099423 194s 7000 0.4308564 -2.6963241 0.21298331 -2.2676219 0.11638995 194s 7500 0.44328381 -2.767933 0.28845767 -2.3268656 -0.055714929 194s 8000 0.48149201 -2.7648936 0.25607634 -2.2858091 -0.24833472 194s 8500 0.44641155 -2.735761 0.26866772 -2.2915815 -0.11006786 194s 9000 0.45443104 -2.70388 0.2307522 -2.2517211 -0.077100374 194s 9500 0.42544663 -2.6959692 0.25023057 -2.2726498 -0.04183171 194s 10000 0.42622279 -2.6434464 0.2125908 -2.2193547 0.052056849 194s Loop time of 0.488148 on 2 procs for 10000 steps with 200 atoms 194s 194s Performance: 8849768.786 tau/day, 20485.576 timesteps/s, 4.097 Matom-step/s 194s 98.7% CPU use with 2 MPI tasks x 1 OpenMP threads 194s 194s MPI task timing breakdown: 194s Section | min time | avg time | max time |%varavg| %total 194s --------------------------------------------------------------- 194s Pair | 0.25857 | 0.28998 | 0.3214 | 5.8 | 59.40 194s Neigh | 0.014371 | 0.015538 | 0.016706 | 0.9 | 3.18 194s Comm | 0.10524 | 0.13702 | 0.1688 | 8.6 | 28.07 194s Output | 0.00040546 | 0.00086563 | 0.0013258 | 0.0 | 0.18 194s Modify | 0.02423 | 0.025918 | 0.027607 | 1.0 | 5.31 194s Other | | 0.01883 | | | 3.86 194s 194s Nlocal: 100 ave 104 max 96 min 194s Histogram: 1 0 0 0 0 0 0 0 0 1 194s Nghost: 123.5 ave 124 max 123 min 194s Histogram: 1 0 0 0 0 0 0 0 0 1 194s Neighs: 820 ave 885 max 755 min 194s Histogram: 1 0 0 0 0 0 0 0 0 1 194s 194s Total # of neighbors = 1640 194s Ave neighs/atom = 8.2 194s Neighbor list builds = 697 194s Dangerous builds = 0 194s Total wall time: 0:00:00 194s LAMMPS (7 Feb 2024 - Update 1) 195s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 195s using 1 OpenMP thread(s) per MPI task 195s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 195s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 195s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 195s 1 by 1 by 1 MPI processor grid 195s Created 200 atoms 195s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 195s create_atoms CPU = 0.000 seconds 195s Setting atom values ... 195s 200 settings made for mass 195s Setting atom values ... 195s 200 settings made for dipole/random 195s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 195s Neighbor list info ... 195s update: every = 1 steps, delay = 0 steps, check = yes 195s max neighbors/atom: 2000, page size: 100000 195s master list distance cutoff = 2.8 195s ghost atom cutoff = 2.8 195s binsize = 1.4, bins = 13 13 2 195s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 195s (1) pair lj/cut/dipole/cut, perpetual 195s attributes: half, newton on 195s pair build: half/bin/atomonly/newton 195s stencil: half/bin/2d 195s bin: standard 195s Setting up Verlet run ... 195s Unit style : lj 195s Current step : 0 195s Time step : 0.005 195s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 195s Step Temp E_pair c_erot TotEng Press 195s 0 0 -2.0965715 0 -2.0965715 -2.4759659 195s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 195s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 195s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 195s 2000 0.44906137 -2.8037446 0.24422529 -2.3569285 0.15012276 195s 2500 0.46036094 -2.8144628 0.25011505 -2.3564037 -0.37955581 195s 3000 0.44916796 -2.7986738 0.24197589 -2.3517517 -0.23759595 195s 3500 0.43708892 -2.7404913 0.20046667 -2.3055878 -0.068108938 195s 4000 0.4277424 -2.7516171 0.22285533 -2.3260134 -0.38856067 195s 4500 0.41051154 -2.7253155 0.22244047 -2.3168566 -0.56435269 195s 5000 0.3930005 -2.7393881 0.26645487 -2.3483526 -0.14501759 195s 5500 0.48374634 -2.7361451 0.17785357 -2.2548175 -0.23588662 195s 6000 0.44341889 -2.7200909 0.2049925 -2.2788891 0.30169398 195s 6500 0.45604374 -2.7449044 0.23816385 -2.2911408 -0.02615159 195s 7000 0.41178901 -2.7023053 0.24691126 -2.2925752 -0.089298567 195s 7500 0.49214202 -2.7631906 0.22991178 -2.2735093 -0.21670068 195s 8000 0.51272822 -2.7861027 0.23867667 -2.2759381 -0.054576195 195s 8500 0.3942697 -2.6555823 0.23621182 -2.263284 -0.15323416 195s 9000 0.44393797 -2.7051517 0.23305036 -2.2634334 -0.32144821 195s 9500 0.49155958 -2.757627 0.23397146 -2.2685252 0.083278026 195s 10000 0.49343489 -2.7193593 0.19771681 -2.2283916 -0.10873755 195s Loop time of 0.697899 on 1 procs for 10000 steps with 200 atoms 195s 195s Performance: 6190006.904 tau/day, 14328.720 timesteps/s, 2.866 Matom-step/s 195s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 195s 195s MPI task timing breakdown: 195s Section | min time | avg time | max time |%varavg| %total 195s --------------------------------------------------------------- 195s Pair | 0.56967 | 0.56967 | 0.56967 | 0.0 | 81.63 195s Neigh | 0.030392 | 0.030392 | 0.030392 | 0.0 | 4.35 195s Comm | 0.035297 | 0.035297 | 0.035297 | 0.0 | 5.06 195s Output | 0.0003359 | 0.0003359 | 0.0003359 | 0.0 | 0.05 195s Modify | 0.048965 | 0.048965 | 0.048965 | 0.0 | 7.02 195s Other | | 0.01324 | | | 1.90 195s 195s Nlocal: 200 ave 200 max 200 min 195s Histogram: 1 0 0 0 0 0 0 0 0 0 195s Nghost: 155 ave 155 max 155 min 195s Histogram: 1 0 0 0 0 0 0 0 0 0 195s Neighs: 1664 ave 1664 max 1664 min 195s Histogram: 1 0 0 0 0 0 0 0 0 0 195s 195s Total # of neighbors = 1664 195s Ave neighs/atom = 8.32 195s Neighbor list builds = 697 195s Dangerous builds = 0 195s Total wall time: 0:00:00 195s run: OK 195s autopkgtest [10:40:58]: test dipole: -----------------------] 196s dipole PASS 196s autopkgtest [10:40:59]: test dipole: - - - - - - - - - - results - - - - - - - - - - 196s autopkgtest [10:40:59]: test ellipse: preparing testbed 196s Reading package lists... 197s Building dependency tree... 197s Reading state information... 197s Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 198s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 199s autopkgtest [10:41:02]: test ellipse: [----------------------- 199s LAMMPS (7 Feb 2024 - Update 1) 199s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 199s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 199s using 1 OpenMP thread(s) per MPI task 199s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 199s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 199s 2 by 1 by 1 MPI processor grid 199s Created 400 atoms 199s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 199s create_atoms CPU = 0.000 seconds 199s Setting atom values ... 199s 29 settings made for type/fraction 199s Setting atom values ... 199s 371 settings made for mass 199s Setting atom values ... 199s 29 settings made for mass 199s Setting atom values ... 199s 371 settings made for shape 199s Setting atom values ... 199s 29 settings made for shape 199s Setting atom values ... 199s 400 settings made for quat/random 199s 371 atoms in group spheroid 199s 199s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 199s 199s Your simulation uses code contributions which should be cited: 199s - pair gayberne command: doi:10.1063/1.3058435 199s The log file lists these citations in BibTeX format. 199s 199s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 199s 199s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 199s Neighbor list info ... 199s update: every = 1 steps, delay = 0 steps, check = yes 199s max neighbors/atom: 2000, page size: 100000 199s master list distance cutoff = 4.8 199s ghost atom cutoff = 4.8 199s binsize = 2.4, bins = 59 59 3 199s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 199s (1) pair gayberne, perpetual 199s attributes: half, newton on 199s pair build: half/bin/atomonly/newton 199s stencil: half/bin/2d 199s bin: standard 199s Setting up Verlet run ... 199s Unit style : lj 199s Current step : 0 199s Time step : 0.002 199s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 199s Step c_rot E_pair TotEng Press Volume 199s 0 2.3158404 0 2.394 0.04788 20000 199s 100 1.7101139 0 1.7678302 0.034413192 20548.286 199s 200 2.3115592 0 2.3895743 0.04649702 20556.796 199s 300 1.831333 0 1.8931405 0.041256922 18354.646 199s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 199s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 199s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 199s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 199s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 199s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 199s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 199s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 199s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 199s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 199s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 199s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 199s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 199s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 199s 1800 2.0033499 -3.7524192 -1.7481879 0.76104974 973.71402 199s 1900 2.0083456 -3.7603247 -1.7442111 0.74095065 988.03964 199s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 199s Loop time of 0.375266 on 2 procs for 2000 steps with 400 atoms 199s 199s Performance: 920945.787 tau/day, 5329.547 timesteps/s, 2.132 Matom-step/s 199s 96.0% CPU use with 2 MPI tasks x 1 OpenMP threads 199s 199s MPI task timing breakdown: 199s Section | min time | avg time | max time |%varavg| %total 199s --------------------------------------------------------------- 199s Pair | 0.1711 | 0.19571 | 0.22033 | 5.6 | 52.15 199s Neigh | 0.010575 | 0.01066 | 0.010744 | 0.1 | 2.84 199s Comm | 0.037229 | 0.06177 | 0.086311 | 9.9 | 16.46 199s Output | 0.017673 | 0.017813 | 0.017953 | 0.1 | 4.75 199s Modify | 0.079561 | 0.079876 | 0.08019 | 0.1 | 21.29 199s Other | | 0.009434 | | | 2.51 199s 199s Nlocal: 200 ave 211 max 189 min 199s Histogram: 1 0 0 0 0 0 0 0 0 1 199s Nghost: 215 ave 217 max 213 min 199s Histogram: 1 0 0 0 0 0 0 0 0 1 199s Neighs: 1561 ave 1651 max 1471 min 199s Histogram: 1 0 0 0 0 0 0 0 0 1 199s 199s Total # of neighbors = 3122 199s Ave neighs/atom = 7.805 199s Neighbor list builds = 346 199s Dangerous builds = 0 199s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 199s Setting up Verlet run ... 199s Unit style : lj 199s Current step : 2000 199s Time step : 0.002 199s Per MPI rank memory allocation (min/avg/max) = 6.899 | 6.899 | 6.899 Mbytes 199s Step c_rot E_pair TotEng Press Volume 199s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 199s 2100 1.9040485 -3.6005672 -1.6802923 0.39862439 989.96894 199s 2200 1.8951971 -3.5921565 -1.6947174 1.0260215 989.96894 199s 2300 2.0029242 -3.7081932 -1.6838651 0.66970247 989.96894 199s 2400 2.0271892 -3.7314226 -1.7100026 0.89700311 989.96894 199s 2500 2.0661249 -3.7753498 -1.7024133 0.57670823 989.96894 199s 2600 2.0610735 -3.7707906 -1.7111976 0.90913324 989.96894 200s 2700 2.0505182 -3.759913 -1.7337449 0.65661806 989.96894 200s 2800 2.1106611 -3.8219493 -1.7370736 0.55275858 989.96894 200s 2900 2.0346954 -3.7427335 -1.7135138 0.69791414 989.96894 200s 3000 2.0331857 -3.7398391 -1.751581 0.051416398 989.96894 200s 3100 1.9983775 -3.7074162 -1.7156494 0.75643227 989.96894 200s 3200 2.1297315 -3.8450391 -1.7173438 1.0595574 989.96894 200s 3300 2.0798058 -3.793496 -1.6857257 1.1572151 989.96894 200s 3400 2.1441179 -3.8596018 -1.7011723 0.61261295 989.96894 200s 3500 2.1035108 -3.8190033 -1.6997662 0.99653756 989.96894 200s 3600 2.0856923 -3.7988484 -1.7184312 1.1264485 989.96894 200s 3700 2.1029212 -3.8148833 -1.7096948 0.96828131 989.96894 200s 3800 2.0253659 -3.7349822 -1.7382292 0.56254829 989.96894 200s 3900 1.9686055 -3.6775217 -1.7283017 1.2472863 989.96894 200s 4000 2.0951026 -3.8095594 -1.6876041 0.79798093 989.96894 200s Loop time of 0.354902 on 2 procs for 2000 steps with 400 atoms 200s 200s Performance: 973790.549 tau/day, 5635.362 timesteps/s, 2.254 Matom-step/s 200s 98.0% CPU use with 2 MPI tasks x 1 OpenMP threads 200s 200s MPI task timing breakdown: 200s Section | min time | avg time | max time |%varavg| %total 200s --------------------------------------------------------------- 200s Pair | 0.24483 | 0.24499 | 0.24514 | 0.0 | 69.03 200s Neigh | 0.0026951 | 0.0030429 | 0.0033908 | 0.6 | 0.86 200s Comm | 0.039338 | 0.039808 | 0.040278 | 0.2 | 11.22 200s Output | 0.016631 | 0.016772 | 0.016913 | 0.1 | 4.73 200s Modify | 0.036868 | 0.04115 | 0.045432 | 2.1 | 11.59 200s Other | | 0.009142 | | | 2.58 200s 200s Nlocal: 200 ave 227 max 173 min 200s Histogram: 1 0 0 0 0 0 0 0 0 1 200s Nghost: 211 ave 219 max 203 min 200s Histogram: 1 0 0 0 0 0 0 0 0 1 200s Neighs: 1650.5 ave 1950 max 1351 min 200s Histogram: 1 0 0 0 0 0 0 0 0 1 200s 200s Total # of neighbors = 3301 200s Ave neighs/atom = 8.2525 200s Neighbor list builds = 49 200s Dangerous builds = 0 200s Total wall time: 0:00:00 200s LAMMPS (7 Feb 2024 - Update 1) 200s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 200s using 1 OpenMP thread(s) per MPI task 200s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 200s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 200s 1 by 1 by 1 MPI processor grid 200s Created 400 atoms 200s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 200s create_atoms CPU = 0.000 seconds 200s Setting atom values ... 200s 29 settings made for type/fraction 200s Setting atom values ... 200s 371 settings made for mass 200s Setting atom values ... 200s 29 settings made for mass 200s Setting atom values ... 200s 371 settings made for shape 200s Setting atom values ... 200s 29 settings made for shape 200s Setting atom values ... 200s 400 settings made for quat/random 200s 371 atoms in group spheroid 200s 200s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 200s 200s Your simulation uses code contributions which should be cited: 200s - pair gayberne command: doi:10.1063/1.3058435 200s The log file lists these citations in BibTeX format. 200s 200s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 200s 200s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 200s Neighbor list info ... 200s update: every = 1 steps, delay = 0 steps, check = yes 200s max neighbors/atom: 2000, page size: 100000 200s master list distance cutoff = 4.8 200s ghost atom cutoff = 4.8 200s binsize = 2.4, bins = 59 59 3 200s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 200s (1) pair gayberne, perpetual 200s attributes: half, newton on 200s pair build: half/bin/atomonly/newton 200s stencil: half/bin/2d 200s bin: standard 200s Setting up Verlet run ... 200s Unit style : lj 200s Current step : 0 200s Time step : 0.002 200s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 200s Step c_rot E_pair TotEng Press Volume 200s 0 2.3158404 0 2.394 0.04788 20000 200s 100 1.7101139 0 1.7678302 0.034413192 20548.286 200s 200 2.3115592 0 2.3895743 0.04649702 20556.796 200s 300 1.831333 0 1.8931405 0.041256922 18354.646 200s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 200s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 200s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 200s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 200s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 200s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 200s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 200s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 200s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 200s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 200s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 200s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 200s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 200s 1700 1.9971755 -3.8166601 -1.8380659 0.41343092 945.60821 200s 1800 2.0033499 -3.7524192 -1.7481879 0.76104975 973.71402 200s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 200s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 200s Loop time of 0.56927 on 1 procs for 2000 steps with 400 atoms 200s 200s Performance: 607093.567 tau/day, 3513.273 timesteps/s, 1.405 Matom-step/s 200s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 200s 200s MPI task timing breakdown: 200s Section | min time | avg time | max time |%varavg| %total 200s --------------------------------------------------------------- 200s Pair | 0.37828 | 0.37828 | 0.37828 | 0.0 | 66.45 201s Neigh | 0.020057 | 0.020057 | 0.020057 | 0.0 | 3.52 201s Comm | 0.010785 | 0.010785 | 0.010785 | 0.0 | 1.89 201s Output | 0.019479 | 0.019479 | 0.019479 | 0.0 | 3.42 201s Modify | 0.13479 | 0.13479 | 0.13479 | 0.0 | 23.68 201s Other | | 0.005874 | | | 1.03 201s 201s Nlocal: 400 ave 400 max 400 min 201s Histogram: 1 0 0 0 0 0 0 0 0 0 201s Nghost: 276 ave 276 max 276 min 201s Histogram: 1 0 0 0 0 0 0 0 0 0 201s Neighs: 3122 ave 3122 max 3122 min 201s Histogram: 1 0 0 0 0 0 0 0 0 0 201s 201s Total # of neighbors = 3122 201s Ave neighs/atom = 7.805 201s Neighbor list builds = 346 201s Dangerous builds = 0 201s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 201s Setting up Verlet run ... 201s Unit style : lj 201s Current step : 2000 201s Time step : 0.002 201s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 201s Step c_rot E_pair TotEng Press Volume 201s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 201s 2100 1.9040485 -3.6005672 -1.6802923 0.39862438 989.96894 201s 2200 1.8951971 -3.5921566 -1.6947174 1.0260215 989.96894 201s 2300 2.0029244 -3.7081934 -1.6838652 0.66970135 989.96894 201s 2400 2.0271885 -3.731422 -1.7100022 0.89700608 989.96894 201s 2500 2.066122 -3.7753468 -1.7024127 0.57671483 989.96894 201s 2600 2.0610701 -3.7707871 -1.7111979 0.90915268 989.96894 201s 2700 2.0505226 -3.7599192 -1.7337496 0.65661546 989.96894 201s 2800 2.1106391 -3.8219307 -1.7370733 0.55280503 989.96894 201s 2900 2.0347598 -3.7428025 -1.7135189 0.69781833 989.96894 201s 3000 2.0330208 -3.7396616 -1.7515118 0.052338568 989.96894 201s 3100 1.9979524 -3.7070895 -1.715955 0.75689837 989.96894 201s 3200 2.1279004 -3.8431144 -1.7172074 1.0681978 989.96894 201s 3300 2.0795122 -3.7933999 -1.6843677 1.160141 989.96894 201s 3400 2.1458506 -3.8618217 -1.7011471 0.60302387 989.96894 201s 3500 2.0922186 -3.8066733 -1.7042032 1.020929 989.96894 201s 3600 2.0923687 -3.8049721 -1.7151823 0.97720853 989.96894 201s 3700 2.1082732 -3.8201734 -1.6945215 0.97495003 989.96894 201s 3800 2.0883146 -3.8011237 -1.6897726 0.59373082 989.96894 201s 3900 2.1821449 -3.8971145 -1.6976484 0.53241288 989.96894 201s 4000 2.103916 -3.8154046 -1.6865256 0.96939819 989.96894 201s Loop time of 0.614017 on 1 procs for 2000 steps with 400 atoms 201s 201s Performance: 562850.460 tau/day, 3257.236 timesteps/s, 1.303 Matom-step/s 201s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 201s 201s MPI task timing breakdown: 201s Section | min time | avg time | max time |%varavg| %total 201s --------------------------------------------------------------- 201s Pair | 0.49066 | 0.49066 | 0.49066 | 0.0 | 79.91 201s Neigh | 0.0059996 | 0.0059996 | 0.0059996 | 0.0 | 0.98 201s Comm | 0.011742 | 0.011742 | 0.011742 | 0.0 | 1.91 201s Output | 0.019253 | 0.019253 | 0.019253 | 0.0 | 3.14 201s Modify | 0.081861 | 0.081861 | 0.081861 | 0.0 | 13.33 201s Other | | 0.004498 | | | 0.73 201s 201s Nlocal: 400 ave 400 max 400 min 201s Histogram: 1 0 0 0 0 0 0 0 0 0 201s Nghost: 284 ave 284 max 284 min 201s Histogram: 1 0 0 0 0 0 0 0 0 0 201s Neighs: 3287 ave 3287 max 3287 min 201s Histogram: 1 0 0 0 0 0 0 0 0 0 201s 201s Total # of neighbors = 3287 201s Ave neighs/atom = 8.2175 201s Neighbor list builds = 51 201s Dangerous builds = 0 201s Total wall time: 0:00:01 201s LAMMPS (7 Feb 2024 - Update 1) 201s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 201s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 201s using 1 OpenMP thread(s) per MPI task 201s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 201s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 201s 2 by 1 by 1 MPI processor grid 201s Created 400 atoms 201s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 201s create_atoms CPU = 0.001 seconds 201s Setting atom values ... 201s 29 settings made for type/fraction 201s Setting atom values ... 201s 371 settings made for mass 201s Setting atom values ... 201s 29 settings made for mass 201s Setting atom values ... 201s 371 settings made for shape 201s Setting atom values ... 201s 29 settings made for shape 201s Setting atom values ... 201s 400 settings made for quat/random 201s 371 atoms in group spheroid 201s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 201s Neighbor list info ... 201s update: every = 1 steps, delay = 0 steps, check = yes 201s max neighbors/atom: 2000, page size: 100000 201s master list distance cutoff = 4.8 201s ghost atom cutoff = 4.8 201s binsize = 2.4, bins = 59 59 3 201s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 201s (1) pair resquared, perpetual 201s attributes: half, newton on 201s pair build: half/bin/atomonly/newton 201s stencil: half/bin/2d 201s bin: standard 201s Setting up Verlet run ... 201s Unit style : lj 201s Current step : 0 201s Time step : 0.002 201s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 201s Step c_rot E_pair TotEng Press Volume 201s 0 2.3158404 0 2.394 0.04788 20000 201s 100 1.7101139 0 1.7678302 0.034413192 20548.286 201s 200 2.3115592 0 2.3895743 0.04649702 20556.796 201s 300 1.831333 0 1.8931405 0.041256922 18354.646 201s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 201s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 201s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 201s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 201s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 201s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 201s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 201s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 202s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 202s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 202s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 202s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 202s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 202s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 202s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 202s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 202s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 202s Loop time of 0.549536 on 2 procs for 2000 steps with 400 atoms 202s 202s Performance: 628894.363 tau/day, 3639.435 timesteps/s, 1.456 Matom-step/s 202s 98.3% CPU use with 2 MPI tasks x 1 OpenMP threads 202s 202s MPI task timing breakdown: 202s Section | min time | avg time | max time |%varavg| %total 202s --------------------------------------------------------------- 202s Pair | 0.3818 | 0.39211 | 0.40241 | 1.6 | 71.35 202s Neigh | 0.010831 | 0.010985 | 0.011138 | 0.1 | 2.00 202s Comm | 0.032399 | 0.04237 | 0.052341 | 4.8 | 7.71 202s Output | 0.01573 | 0.015832 | 0.015935 | 0.1 | 2.88 202s Modify | 0.078972 | 0.079375 | 0.079779 | 0.1 | 14.44 202s Other | | 0.008868 | | | 1.61 202s 202s Nlocal: 200 ave 210 max 190 min 202s Histogram: 1 0 0 0 0 0 0 0 0 1 202s Nghost: 164 ave 168 max 160 min 202s Histogram: 1 0 0 0 0 0 0 0 0 1 202s Neighs: 910 ave 958 max 862 min 202s Histogram: 1 0 0 0 0 0 0 0 0 1 202s 202s Total # of neighbors = 1820 202s Ave neighs/atom = 4.55 202s Neighbor list builds = 420 202s Dangerous builds = 0 202s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 202s Setting up Verlet run ... 202s Unit style : lj 202s Current step : 2000 202s Time step : 0.002 202s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 202s Step c_rot E_pair TotEng Press Volume 202s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 202s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 202s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 202s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 202s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 202s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 202s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 202s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 202s 2800 1.9890373 0.15589592 2.1204126 1.2343376 1639.6982 202s 2900 1.9922852 0.15256975 2.0956529 1.2419165 1639.6982 202s 3000 1.9618081 0.18405955 2.1392907 1.3468024 1639.6982 202s 3100 1.920815 0.22640753 2.1223513 1.6487874 1639.6982 202s 3200 1.9201455 0.22718151 2.1360379 1.537008 1639.6982 202s 3300 2.0073207 0.13690691 2.1185858 1.1973827 1639.6982 202s 3400 2.0179674 0.12601938 2.1227815 1.0847666 1639.6982 202s 3500 1.9561038 0.18991636 2.11504 1.3377604 1639.6982 202s 3600 1.9971208 0.14756321 2.1401442 1.2026471 1639.6982 202s 3700 1.9731986 0.17227975 2.1472974 1.2730305 1639.6982 203s 3800 2.0000945 0.1444447 2.0994588 1.1502433 1639.6982 203s 3900 1.9911415 0.15372488 2.1423535 1.227966 1639.6982 203s 4000 1.9822293 0.16299254 2.0899439 1.2166942 1639.6982 203s Loop time of 0.837236 on 2 procs for 2000 steps with 400 atoms 203s 203s Performance: 412786.759 tau/day, 2388.812 timesteps/s, 955.525 katom-step/s 203s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 203s 203s MPI task timing breakdown: 203s Section | min time | avg time | max time |%varavg| %total 203s --------------------------------------------------------------- 203s Pair | 0.67854 | 0.70887 | 0.73919 | 3.6 | 84.67 203s Neigh | 0.0020815 | 0.0022719 | 0.0024622 | 0.4 | 0.27 203s Comm | 0.029586 | 0.060073 | 0.090561 | 12.4 | 7.18 203s Output | 0.016433 | 0.016549 | 0.016665 | 0.1 | 1.98 203s Modify | 0.039722 | 0.041679 | 0.043636 | 1.0 | 4.98 203s Other | | 0.007797 | | | 0.93 203s 203s Nlocal: 200 ave 212 max 188 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s Nghost: 171.5 ave 173 max 170 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s Neighs: 880.5 ave 946 max 815 min 203s Histogram: 1 0 0 0 0 0 0 0 0 1 203s 203s Total # of neighbors = 1761 203s Ave neighs/atom = 4.4025 203s Neighbor list builds = 49 203s Dangerous builds = 0 203s Total wall time: 0:00:01 203s LAMMPS (7 Feb 2024 - Update 1) 204s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 204s using 1 OpenMP thread(s) per MPI task 204s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 204s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 204s 1 by 1 by 1 MPI processor grid 204s Created 400 atoms 204s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 204s create_atoms CPU = 0.000 seconds 204s Setting atom values ... 204s 29 settings made for type/fraction 204s Setting atom values ... 204s 371 settings made for mass 204s Setting atom values ... 204s 29 settings made for mass 204s Setting atom values ... 204s 371 settings made for shape 204s Setting atom values ... 204s 29 settings made for shape 204s Setting atom values ... 204s 400 settings made for quat/random 204s 371 atoms in group spheroid 204s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 204s Neighbor list info ... 204s update: every = 1 steps, delay = 0 steps, check = yes 204s max neighbors/atom: 2000, page size: 100000 204s master list distance cutoff = 4.8 204s ghost atom cutoff = 4.8 204s binsize = 2.4, bins = 59 59 3 204s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 204s (1) pair resquared, perpetual 204s attributes: half, newton on 204s pair build: half/bin/atomonly/newton 204s stencil: half/bin/2d 204s bin: standard 204s Setting up Verlet run ... 204s Unit style : lj 204s Current step : 0 204s Time step : 0.002 204s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 204s Step c_rot E_pair TotEng Press Volume 204s 0 2.3158404 0 2.394 0.04788 20000 204s 100 1.7101139 0 1.7678302 0.034413192 20548.286 204s 200 2.3115592 0 2.3895743 0.04649702 20556.796 204s 300 1.831333 0 1.8931405 0.041256922 18354.646 204s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 204s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 204s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 204s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 204s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 204s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 204s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 204s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 204s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 204s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 204s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 204s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 204s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 204s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 204s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 204s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 204s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 204s Loop time of 0.966056 on 1 procs for 2000 steps with 400 atoms 204s 204s Performance: 357743.216 tau/day, 2070.273 timesteps/s, 828.109 katom-step/s 204s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 204s 204s MPI task timing breakdown: 204s Section | min time | avg time | max time |%varavg| %total 204s --------------------------------------------------------------- 204s Pair | 0.77561 | 0.77561 | 0.77561 | 0.0 | 80.29 204s Neigh | 0.021284 | 0.021284 | 0.021284 | 0.0 | 2.20 204s Comm | 0.0082354 | 0.0082354 | 0.0082354 | 0.0 | 0.85 204s Output | 0.019365 | 0.019365 | 0.019365 | 0.0 | 2.00 204s Modify | 0.13556 | 0.13556 | 0.13556 | 0.0 | 14.03 205s Other | | 0.005998 | | | 0.62 205s 205s Nlocal: 400 ave 400 max 400 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s Nghost: 206 ave 206 max 206 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s Neighs: 1820 ave 1820 max 1820 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s 205s Total # of neighbors = 1820 205s Ave neighs/atom = 4.55 205s Neighbor list builds = 420 205s Dangerous builds = 0 205s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 205s Setting up Verlet run ... 205s Unit style : lj 205s Current step : 2000 205s Time step : 0.002 205s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 205s Step c_rot E_pair TotEng Press Volume 205s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 205s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 205s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 205s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 205s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 205s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 205s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 205s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 205s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 205s 2900 1.9922852 0.15256971 2.0956529 1.2419163 1639.6982 205s 3000 1.9618081 0.18405956 2.1392907 1.3468024 1639.6982 205s 3100 1.9208147 0.22640783 2.1223514 1.6487893 1639.6982 205s 3200 1.9201454 0.2271816 2.136038 1.5370083 1639.6982 205s 3300 2.0073199 0.13690769 2.1185864 1.1973892 1639.6982 205s 3400 2.0179674 0.12601938 2.1227814 1.0847667 1639.6982 205s 3500 1.9561059 0.1899142 2.1150384 1.3377509 1639.6982 205s 3600 1.9971218 0.14756225 2.1401434 1.2026401 1639.6982 205s 3700 1.9731874 0.17229133 2.1473283 1.2730808 1639.6982 205s 3800 2.0000992 0.14443988 2.0994807 1.1502356 1639.6982 205s 3900 1.9911429 0.15372349 2.1424035 1.227982 1639.6982 205s 4000 1.9823333 0.16288519 2.0899581 1.2162824 1639.6982 205s Loop time of 1.54086 on 1 procs for 2000 steps with 400 atoms 205s 205s Performance: 224291.050 tau/day, 1297.981 timesteps/s, 519.192 katom-step/s 205s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 205s 205s MPI task timing breakdown: 205s Section | min time | avg time | max time |%varavg| %total 205s --------------------------------------------------------------- 205s Pair | 1.4196 | 1.4196 | 1.4196 | 0.0 | 92.13 205s Neigh | 0.0044685 | 0.0044685 | 0.0044685 | 0.0 | 0.29 205s Comm | 0.0091675 | 0.0091675 | 0.0091675 | 0.0 | 0.59 205s Output | 0.019419 | 0.019419 | 0.019419 | 0.0 | 1.26 205s Modify | 0.083502 | 0.083502 | 0.083502 | 0.0 | 5.42 205s Other | | 0.004652 | | | 0.30 205s 205s Nlocal: 400 ave 400 max 400 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s Nghost: 215 ave 215 max 215 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s Neighs: 1761 ave 1761 max 1761 min 205s Histogram: 1 0 0 0 0 0 0 0 0 0 205s 205s Total # of neighbors = 1761 205s Ave neighs/atom = 4.4025 205s Neighbor list builds = 49 205s Dangerous builds = 0 205s Total wall time: 0:00:02 205s run: OK 206s autopkgtest [10:41:09]: test ellipse: -----------------------] 206s autopkgtest [10:41:09]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 206s ellipse PASS 207s autopkgtest [10:41:10]: test flow: preparing testbed 207s Reading package lists... 207s Building dependency tree... 207s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 208s Starting 2 pkgProblemResolver with broken count: 0 208s Done 208s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 209s autopkgtest [10:41:12]: test flow: [----------------------- 210s LAMMPS (7 Feb 2024 - Update 1) 210s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 210s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 210s using 1 OpenMP thread(s) per MPI task 210s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 210s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 210s 2 by 1 by 1 MPI processor grid 210s Created 420 atoms 210s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 210s create_atoms CPU = 0.000 seconds 210s 60 atoms in group lower 210s 60 atoms in group upper 210s 120 atoms in group boundary 210s 300 atoms in group flow 210s Setting atom values ... 210s 60 settings made for type 210s Setting atom values ... 210s 60 settings made for type 210s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 210s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 210s Neighbor list info ... 210s update: every = 1 steps, delay = 5 steps, check = yes 210s max neighbors/atom: 2000, page size: 100000 210s master list distance cutoff = 1.42246 210s ghost atom cutoff = 1.42246 210s binsize = 0.71123, bins = 37 32 1 210s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 210s (1) pair lj/cut, perpetual 210s attributes: half, newton on 210s pair build: half/bin/atomonly/newton 210s stencil: half/bin/2d 210s bin: standard 210s Setting up Verlet run ... 210s Unit style : lj 210s Current step : 0 210s Time step : 0.003 210s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 210s Step Temp E_pair E_mol TotEng Press Volume 210s 0 1 0 0 0.71190476 0.52314537 571.54286 210s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 210s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 210s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 210s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 210s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 210s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 210s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 210s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 210s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 210s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 210s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 210s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 210s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 210s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 210s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 210s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 210s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 210s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 210s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 210s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 210s Loop time of 0.15094 on 2 procs for 10000 steps with 420 atoms 210s 210s Performance: 17172441.330 tau/day, 66251.703 timesteps/s, 27.826 Matom-step/s 210s 97.0% CPU use with 2 MPI tasks x 1 OpenMP threads 210s 210s MPI task timing breakdown: 210s Section | min time | avg time | max time |%varavg| %total 210s --------------------------------------------------------------- 210s Pair | 0.035289 | 0.035337 | 0.035384 | 0.0 | 23.41 210s Neigh | 0.019821 | 0.020003 | 0.020185 | 0.1 | 13.25 210s Comm | 0.051824 | 0.051942 | 0.05206 | 0.1 | 34.41 210s Output | 0.00031555 | 0.0011907 | 0.0020659 | 2.5 | 0.79 210s Modify | 0.025621 | 0.025772 | 0.025923 | 0.1 | 17.07 210s Other | | 0.0167 | | | 11.06 210s 210s Nlocal: 210 ave 214 max 206 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s Nghost: 51 ave 52 max 50 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s Neighs: 472 ave 494 max 450 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s 210s Total # of neighbors = 944 210s Ave neighs/atom = 2.247619 210s Neighbor list builds = 994 210s Dangerous builds = 0 210s Total wall time: 0:00:00 210s LAMMPS (7 Feb 2024 - Update 1) 210s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 210s using 1 OpenMP thread(s) per MPI task 210s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 210s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 210s 1 by 1 by 1 MPI processor grid 210s Created 420 atoms 210s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 210s create_atoms CPU = 0.000 seconds 210s 60 atoms in group lower 210s 60 atoms in group upper 210s 120 atoms in group boundary 210s 300 atoms in group flow 210s Setting atom values ... 210s 60 settings made for type 210s Setting atom values ... 210s 60 settings made for type 210s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 210s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 210s Neighbor list info ... 210s update: every = 1 steps, delay = 5 steps, check = yes 210s max neighbors/atom: 2000, page size: 100000 210s master list distance cutoff = 1.42246 210s ghost atom cutoff = 1.42246 210s binsize = 0.71123, bins = 37 32 1 210s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 210s (1) pair lj/cut, perpetual 210s attributes: half, newton on 210s pair build: half/bin/atomonly/newton 210s stencil: half/bin/2d 210s bin: standard 210s Setting up Verlet run ... 210s Unit style : lj 210s Current step : 0 210s Time step : 0.003 210s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 210s Step Temp E_pair E_mol TotEng Press Volume 210s 0 1 0 0 0.71190476 0.52314537 571.54286 210s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 210s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 210s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 210s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 210s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 210s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 210s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 210s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 210s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 210s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 210s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 210s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 210s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 210s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 210s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 210s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 210s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 210s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 210s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 210s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 210s Loop time of 0.223053 on 1 procs for 10000 steps with 420 atoms 210s 210s Performance: 11620580.202 tau/day, 44832.485 timesteps/s, 18.830 Matom-step/s 210s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 210s 210s MPI task timing breakdown: 210s Section | min time | avg time | max time |%varavg| %total 210s --------------------------------------------------------------- 210s Pair | 0.077646 | 0.077646 | 0.077646 | 0.0 | 34.81 210s Neigh | 0.041027 | 0.041027 | 0.041027 | 0.0 | 18.39 210s Comm | 0.012788 | 0.012788 | 0.012788 | 0.0 | 5.73 210s Output | 0.0003559 | 0.0003559 | 0.0003559 | 0.0 | 0.16 210s Modify | 0.060611 | 0.060611 | 0.060611 | 0.0 | 27.17 210s Other | | 0.03062 | | | 13.73 210s 210s Nlocal: 420 ave 420 max 420 min 210s Histogram: 1 0 0 0 0 0 0 0 0 0 210s Nghost: 50 ave 50 max 50 min 210s Histogram: 1 0 0 0 0 0 0 0 0 0 210s Neighs: 946 ave 946 max 946 min 210s Histogram: 1 0 0 0 0 0 0 0 0 0 210s 210s Total # of neighbors = 946 210s Ave neighs/atom = 2.252381 210s Neighbor list builds = 979 210s Dangerous builds = 0 210s Total wall time: 0:00:00 210s LAMMPS (7 Feb 2024 - Update 1) 210s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 210s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 210s using 1 OpenMP thread(s) per MPI task 210s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 210s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 210s 2 by 1 by 1 MPI processor grid 210s Created 420 atoms 210s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 210s create_atoms CPU = 0.001 seconds 210s 60 atoms in group lower 210s 60 atoms in group upper 210s 120 atoms in group boundary 210s 300 atoms in group flow 210s Setting atom values ... 210s 60 settings made for type 210s Setting atom values ... 210s 60 settings made for type 210s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 210s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 210s Neighbor list info ... 210s update: every = 1 steps, delay = 5 steps, check = yes 210s max neighbors/atom: 2000, page size: 100000 210s master list distance cutoff = 1.42246 210s ghost atom cutoff = 1.42246 210s binsize = 0.71123, bins = 37 32 1 210s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 210s (1) pair lj/cut, perpetual 210s attributes: half, newton on 210s pair build: half/bin/atomonly/newton 210s stencil: half/bin/2d 210s bin: standard 210s Setting up Verlet run ... 210s Unit style : lj 210s Current step : 0 210s Time step : 0.003 210s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 210s Step Temp E_pair E_mol TotEng Press Volume 210s 0 1 0 0 0.71190476 0.52314537 571.54286 210s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 210s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 210s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 211s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 211s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 211s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 211s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 211s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 211s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 211s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 211s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 211s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 211s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 211s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 211s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 211s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 211s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 211s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 211s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 211s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 211s Loop time of 0.225774 on 2 procs for 10000 steps with 420 atoms 211s 211s Performance: 11480524.243 tau/day, 44292.146 timesteps/s, 18.603 Matom-step/s 211s 98.3% CPU use with 2 MPI tasks x 1 OpenMP threads 211s 211s MPI task timing breakdown: 211s Section | min time | avg time | max time |%varavg| %total 211s --------------------------------------------------------------- 211s Pair | 0.040377 | 0.040574 | 0.040771 | 0.1 | 17.97 211s Neigh | 0.011909 | 0.012232 | 0.012555 | 0.3 | 5.42 211s Comm | 0.081614 | 0.081744 | 0.081873 | 0.0 | 36.21 211s Output | 0.00036682 | 0.001913 | 0.0034592 | 3.5 | 0.85 211s Modify | 0.064348 | 0.064729 | 0.06511 | 0.1 | 28.67 211s Other | | 0.02458 | | | 10.89 211s 211s Nlocal: 210 ave 211 max 209 min 211s Histogram: 1 0 0 0 0 0 0 0 0 1 211s Nghost: 50 ave 51 max 49 min 211s Histogram: 1 0 0 0 0 0 0 0 0 1 211s Neighs: 563.5 ave 569 max 558 min 211s Histogram: 1 0 0 0 0 0 0 0 0 1 211s 211s Total # of neighbors = 1127 211s Ave neighs/atom = 2.6833333 211s Neighbor list builds = 560 211s Dangerous builds = 0 211s Total wall time: 0:00:00 211s LAMMPS (7 Feb 2024 - Update 1) 211s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 211s using 1 OpenMP thread(s) per MPI task 211s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 211s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 211s 1 by 1 by 1 MPI processor grid 211s Created 420 atoms 211s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 211s create_atoms CPU = 0.000 seconds 211s 60 atoms in group lower 211s 60 atoms in group upper 211s 120 atoms in group boundary 211s 300 atoms in group flow 211s Setting atom values ... 211s 60 settings made for type 211s Setting atom values ... 211s 60 settings made for type 211s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 211s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 211s Neighbor list info ... 211s update: every = 1 steps, delay = 5 steps, check = yes 211s max neighbors/atom: 2000, page size: 100000 211s master list distance cutoff = 1.42246 211s ghost atom cutoff = 1.42246 211s binsize = 0.71123, bins = 37 32 1 211s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 211s (1) pair lj/cut, perpetual 211s attributes: half, newton on 211s pair build: half/bin/atomonly/newton 211s stencil: half/bin/2d 211s bin: standard 211s Setting up Verlet run ... 211s Unit style : lj 211s Current step : 0 211s Time step : 0.003 211s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 211s Step Temp E_pair E_mol TotEng Press Volume 211s 0 1 0 0 0.71190476 0.52314537 571.54286 211s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 211s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 211s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 211s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 211s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 211s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 211s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 211s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 211s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 211s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 211s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 211s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 211s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 211s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 211s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 211s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 211s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 211s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 211s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 211s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 211s Loop time of 0.247519 on 1 procs for 10000 steps with 420 atoms 211s 211s Performance: 10471924.002 tau/day, 40400.941 timesteps/s, 16.968 Matom-step/s 211s 86.2% CPU use with 1 MPI tasks x 1 OpenMP threads 211s 211s MPI task timing breakdown: 211s Section | min time | avg time | max time |%varavg| %total 211s --------------------------------------------------------------- 211s Pair | 0.087659 | 0.087659 | 0.087659 | 0.0 | 35.42 211s Neigh | 0.024258 | 0.024258 | 0.024258 | 0.0 | 9.80 211s Comm | 0.0074461 | 0.0074461 | 0.0074461 | 0.0 | 3.01 211s Output | 0.00041782 | 0.00041782 | 0.00041782 | 0.0 | 0.17 211s Modify | 0.11132 | 0.11132 | 0.11132 | 0.0 | 44.98 211s Other | | 0.01642 | | | 6.63 211s 211s Nlocal: 420 ave 420 max 420 min 211s Histogram: 1 0 0 0 0 0 0 0 0 0 211s Nghost: 51 ave 51 max 51 min 211s Histogram: 1 0 0 0 0 0 0 0 0 0 211s Neighs: 1150 ave 1150 max 1150 min 211s Histogram: 1 0 0 0 0 0 0 0 0 0 211s 211s Total # of neighbors = 1150 211s Ave neighs/atom = 2.7380952 211s Neighbor list builds = 563 211s Dangerous builds = 0 211s Total wall time: 0:00:00 211s run: OK 211s autopkgtest [10:41:14]: test flow: -----------------------] 212s autopkgtest [10:41:15]: test flow: - - - - - - - - - - results - - - - - - - - - - 212s flow PASS 212s autopkgtest [10:41:15]: test friction: preparing testbed 212s Reading package lists... 213s Building dependency tree... 213s Reading state information... 213s Starting pkgProblemResolver with broken count: 0 213s Starting 2 pkgProblemResolver with broken count: 0 213s Done 214s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 215s autopkgtest [10:41:18]: test friction: [----------------------- 215s LAMMPS (7 Feb 2024 - Update 1) 215s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 215s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 215s using 1 OpenMP thread(s) per MPI task 215s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 215s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 215s 2 by 1 by 1 MPI processor grid 215s Created 750 atoms 215s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 215s create_atoms CPU = 0.000 seconds 215s Created 750 atoms 215s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 215s create_atoms CPU = 0.000 seconds 215s Created 112 atoms 215s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 215s create_atoms CPU = 0.000 seconds 215s Created 112 atoms 215s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 215s create_atoms CPU = 0.000 seconds 215s 750 atoms in group lo 215s 862 atoms in group lo 215s 750 atoms in group hi 215s 862 atoms in group hi 215s 150 atoms in group lo-fixed 215s 150 atoms in group hi-fixed 215s 300 atoms in group boundary 215s 1424 atoms in group mobile 215s Setting atom values ... 215s 150 settings made for type 215s Setting atom values ... 215s 150 settings made for type 215s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 215s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 215s Neighbor list info ... 215s update: every = 1 steps, delay = 5 steps, check = yes 215s max neighbors/atom: 2000, page size: 100000 215s master list distance cutoff = 2.8 215s ghost atom cutoff = 2.8 215s binsize = 1.4, bins = 41 31 1 215s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 215s (1) pair lj/cut, perpetual 215s attributes: half, newton on 215s pair build: half/bin/atomonly/newton 215s stencil: half/bin/2d 215s bin: standard 215s Setting up Verlet run ... 215s Unit style : lj 215s Current step : 0 215s Time step : 0.0025 215s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 215s Step Temp E_pair E_mol TotEng Press Volume 215s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 215s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 215s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 216s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 216s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 216s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 216s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 216s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 216s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 216s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 216s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 217s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 217s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 217s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 217s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 217s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 217s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 217s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 217s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 218s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 218s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 218s Loop time of 2.46922 on 2 procs for 20000 steps with 1724 atoms 218s 218s Performance: 1749542.567 tau/day, 8099.734 timesteps/s, 13.964 Matom-step/s 218s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 218s 218s MPI task timing breakdown: 218s Section | min time | avg time | max time |%varavg| %total 218s --------------------------------------------------------------- 218s Pair | 1.6184 | 1.7291 | 1.8397 | 8.4 | 70.02 218s Neigh | 0.099548 | 0.10968 | 0.11982 | 3.1 | 4.44 218s Comm | 0.20133 | 0.32436 | 0.44739 | 21.6 | 13.14 218s Output | 0.00042623 | 0.0011282 | 0.0018303 | 2.1 | 0.05 218s Modify | 0.19886 | 0.20856 | 0.21827 | 2.1 | 8.45 218s Other | | 0.09642 | | | 3.90 218s 218s Nlocal: 862 ave 874 max 850 min 218s Histogram: 1 0 0 0 0 0 0 0 0 1 218s Nghost: 165.5 ave 166 max 165 min 218s Histogram: 1 0 0 0 0 0 0 0 0 1 218s Neighs: 7198 ave 7283 max 7113 min 218s Histogram: 1 0 0 0 0 0 0 0 0 1 218s 218s Total # of neighbors = 14396 218s Ave neighs/atom = 8.350348 218s Neighbor list builds = 720 218s Dangerous builds = 0 218s Total wall time: 0:00:02 218s LAMMPS (7 Feb 2024 - Update 1) 222s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 222s using 1 OpenMP thread(s) per MPI task 222s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 222s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 222s 1 by 1 by 1 MPI processor grid 222s Created 750 atoms 222s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 222s create_atoms CPU = 0.000 seconds 222s Created 750 atoms 222s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 222s create_atoms CPU = 0.000 seconds 222s Created 112 atoms 222s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 222s create_atoms CPU = 0.000 seconds 222s Created 112 atoms 222s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 222s create_atoms CPU = 0.000 seconds 222s 750 atoms in group lo 222s 862 atoms in group lo 222s 750 atoms in group hi 222s 862 atoms in group hi 222s 150 atoms in group lo-fixed 222s 150 atoms in group hi-fixed 222s 300 atoms in group boundary 222s 1424 atoms in group mobile 222s Setting atom values ... 222s 150 settings made for type 222s Setting atom values ... 222s 150 settings made for type 222s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 222s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 222s Neighbor list info ... 222s update: every = 1 steps, delay = 5 steps, check = yes 222s max neighbors/atom: 2000, page size: 100000 222s master list distance cutoff = 2.8 222s ghost atom cutoff = 2.8 222s binsize = 1.4, bins = 41 31 1 222s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 222s (1) pair lj/cut, perpetual 222s attributes: half, newton on 222s pair build: half/bin/atomonly/newton 222s stencil: half/bin/2d 222s bin: standard 222s Setting up Verlet run ... 222s Unit style : lj 222s Current step : 0 222s Time step : 0.0025 222s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 222s Step Temp E_pair E_mol TotEng Press Volume 222s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 222s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 222s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 222s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 222s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 222s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 222s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 222s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 222s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 222s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 222s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 222s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 222s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 222s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 222s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 222s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 222s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 222s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 222s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 222s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 222s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 222s Loop time of 4.21213 on 1 procs for 20000 steps with 1724 atoms 222s 222s Performance: 1025609.774 tau/day, 4748.193 timesteps/s, 8.186 Matom-step/s 222s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 222s 222s MPI task timing breakdown: 222s Section | min time | avg time | max time |%varavg| %total 222s --------------------------------------------------------------- 222s Pair | 3.4372 | 3.4372 | 3.4372 | 0.0 | 81.60 222s Neigh | 0.2069 | 0.2069 | 0.2069 | 0.0 | 4.91 222s Comm | 0.029716 | 0.029716 | 0.029716 | 0.0 | 0.71 222s Output | 0.00056066 | 0.00056066 | 0.00056066 | 0.0 | 0.01 222s Modify | 0.42254 | 0.42254 | 0.42254 | 0.0 | 10.03 222s Other | | 0.1152 | | | 2.73 222s 222s Nlocal: 1724 ave 1724 max 1724 min 222s Histogram: 1 0 0 0 0 0 0 0 0 0 222s Nghost: 145 ave 145 max 145 min 222s Histogram: 1 0 0 0 0 0 0 0 0 0 222s Neighs: 14397 ave 14397 max 14397 min 222s Histogram: 1 0 0 0 0 0 0 0 0 0 222s 222s Total # of neighbors = 14397 222s Ave neighs/atom = 8.3509281 222s Neighbor list builds = 723 222s Dangerous builds = 0 222s Total wall time: 0:00:04 222s run: OK 222s autopkgtest [10:41:25]: test friction: -----------------------] 223s autopkgtest [10:41:26]: test friction: - - - - - - - - - - results - - - - - - - - - - 223s friction PASS 223s autopkgtest [10:41:26]: test hugo: preparing testbed 223s Reading package lists... 224s Building dependency tree... 224s Reading state information... 224s Starting pkgProblemResolver with broken count: 0 224s Starting 2 pkgProblemResolver with broken count: 0 224s Done 225s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 226s autopkgtest [10:41:29]: test hugo: [----------------------- 226s LAMMPS (7 Feb 2024 - Update 1) 226s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 226s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 226s using 1 OpenMP thread(s) per MPI task 226s Lattice spacing in x,y,z = 1.4142135 2 2 226s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 226s 1 by 1 by 2 MPI processor grid 226s Created 1000 atoms 226s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 226s create_atoms CPU = 0.001 seconds 226s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 226s Neighbor list info ... 226s update: every = 1 steps, delay = 0 steps, check = yes 226s max neighbors/atom: 2000, page size: 100000 226s master list distance cutoff = 1.8475372 226s ghost atom cutoff = 1.8475372 226s binsize = 0.92376862, bins = 8 11 11 226s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 226s (1) pair lj/cubic, perpetual 226s attributes: half, newton on 226s pair build: half/bin/atomonly/newton 226s stencil: half/bin/3d 226s bin: standard 226s Setting up cg style minimization ... 226s Unit style : lj 226s Current step : 0 226s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 226s (src/min.cpp:219) 226s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 226s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 226s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 226s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 226s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 226s Loop time of 0.0346078 on 2 procs for 134 steps with 1000 atoms 226s 226s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 226s 226s Minimization stats: 226s Stopping criterion = force tolerance 226s Energy initial, next-to-last, final = 226s -6.29375358358574 -6.33442531515467 -6.33442531515467 226s Force two-norm initial, final = 3395.2895 5.526433e-10 226s Force max component initial, final = 1960.2713 3.2059964e-10 226s Final line search alpha, max atom move = 1 3.2059964e-10 226s Iterations, force evaluations = 134 137 226s 226s MPI task timing breakdown: 226s Section | min time | avg time | max time |%varavg| %total 226s --------------------------------------------------------------- 226s Pair | 0.019466 | 0.021465 | 0.023464 | 1.4 | 62.02 226s Neigh | 0.00039879 | 0.00043643 | 0.00047407 | 0.0 | 1.26 226s Comm | 0.0041091 | 0.0060549 | 0.0080008 | 2.5 | 17.50 226s Output | 2.0959e-05 | 4.6938e-05 | 7.2918e-05 | 0.0 | 0.14 226s Modify | 0 | 0 | 0 | 0.0 | 0.00 226s Other | | 0.006605 | | | 19.08 226s 226s Nlocal: 500 ave 550 max 450 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Nghost: 1214 ave 1264 max 1164 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Neighs: 10500 ave 11550 max 9450 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s 226s Total # of neighbors = 21000 226s Ave neighs/atom = 21 226s Neighbor list builds = 1 226s Dangerous builds = 0 226s System init for write_restart ... 226s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 226s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 226s using 1 OpenMP thread(s) per MPI task 226s Reading restart file ... 226s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 226s restoring atom style atomic from restart 226s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 226s 1 by 1 by 2 MPI processor grid 226s restoring pair style lj/cubic from restart 226s 1000 atoms 226s read_restart CPU = 0.001 seconds 226s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 226s Neighbor list info ... 226s update: every = 1 steps, delay = 0 steps, check = yes 226s max neighbors/atom: 2000, page size: 100000 226s master list distance cutoff = 1.7475372 226s ghost atom cutoff = 1.7475372 226s binsize = 0.87376862, bins = 8 12 12 226s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 226s (1) pair lj/cubic, perpetual 226s attributes: half, newton on 226s pair build: half/bin/atomonly/newton 226s stencil: half/bin/3d 226s bin: standard 226s Setting up Verlet run ... 226s Unit style : lj 226s Current step : 0 226s Time step : 0.001 226s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 226s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 226s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 227s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 227s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 227s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 227s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 228s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 228s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 228s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 229s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 229s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 229s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 229s Loop time of 2.99155 on 2 procs for 10000 steps with 1000 atoms 229s 229s Performance: 288813.697 tau/day, 3342.751 timesteps/s, 3.343 Matom-step/s 229s 93.8% CPU use with 2 MPI tasks x 1 OpenMP threads 229s 229s MPI task timing breakdown: 229s Section | min time | avg time | max time |%varavg| %total 229s --------------------------------------------------------------- 229s Pair | 2.0081 | 2.0117 | 2.0154 | 0.3 | 67.25 229s Neigh | 0.087611 | 0.089147 | 0.090683 | 0.5 | 2.98 229s Comm | 0.40809 | 0.41307 | 0.41805 | 0.8 | 13.81 229s Output | 0.00061742 | 0.00092486 | 0.0012323 | 0.0 | 0.03 229s Modify | 0.42539 | 0.42643 | 0.42747 | 0.2 | 14.25 229s Other | | 0.05024 | | | 1.68 229s 229s Nlocal: 500 ave 509 max 491 min 229s Histogram: 1 0 0 0 0 0 0 0 0 1 229s Nghost: 1346.5 ave 1369 max 1324 min 229s Histogram: 1 0 0 0 0 0 0 0 0 1 229s Neighs: 10311.5 ave 10391 max 10232 min 229s Histogram: 1 0 0 0 0 0 0 0 0 1 229s 229s Total # of neighbors = 20623 229s Ave neighs/atom = 20.623 229s Neighbor list builds = 205 229s Dangerous builds = 0 229s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 229s using 1 OpenMP thread(s) per MPI task 229s Reading restart file ... 229s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 229s restoring atom style atomic from restart 229s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 229s 1 by 1 by 2 MPI processor grid 229s restoring pair style lj/cubic from restart 229s 1000 atoms 229s read_restart CPU = 0.001 seconds 229s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 229s Neighbor list info ... 229s update: every = 1 steps, delay = 0 steps, check = yes 229s max neighbors/atom: 2000, page size: 100000 229s master list distance cutoff = 1.7475372 229s ghost atom cutoff = 1.7475372 229s binsize = 0.87376862, bins = 8 12 12 229s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 229s (1) pair lj/cubic, perpetual 229s attributes: half, newton on 229s pair build: half/bin/atomonly/newton 229s stencil: half/bin/3d 229s bin: standard 229s Setting up Verlet run ... 229s Unit style : lj 229s Current step : 0 229s Time step : 0.001 229s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 229s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 229s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 230s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 230s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 230s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 230s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 231s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 231s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 231s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 231s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 232s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 232s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 232s Loop time of 2.6142 on 2 procs for 10000 steps with 1000 atoms 232s 232s Performance: 330503.207 tau/day, 3825.269 timesteps/s, 3.825 Matom-step/s 232s 94.0% CPU use with 2 MPI tasks x 1 OpenMP threads 232s 232s MPI task timing breakdown: 232s Section | min time | avg time | max time |%varavg| %total 232s --------------------------------------------------------------- 232s Pair | 1.756 | 1.7818 | 1.8076 | 1.9 | 68.16 232s Neigh | 0.0042568 | 0.0042904 | 0.0043241 | 0.1 | 0.16 232s Comm | 0.33276 | 0.35923 | 0.38569 | 4.4 | 13.74 232s Output | 0.00064598 | 0.0011614 | 0.0016768 | 1.5 | 0.04 232s Modify | 0.41677 | 0.41949 | 0.42221 | 0.4 | 16.05 232s Other | | 0.04822 | | | 1.84 232s 232s Nlocal: 500 ave 508 max 492 min 232s Histogram: 1 0 0 0 0 0 0 0 0 1 232s Nghost: 1214 ave 1222 max 1206 min 232s Histogram: 1 0 0 0 0 0 0 0 0 1 232s Neighs: 10500 ave 10668 max 10332 min 232s Histogram: 1 0 0 0 0 0 0 0 0 1 232s 232s Total # of neighbors = 21000 232s Ave neighs/atom = 21 232s Neighbor list builds = 10 232s Dangerous builds = 0 232s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 232s using 1 OpenMP thread(s) per MPI task 232s Reading restart file ... 232s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 232s restoring atom style atomic from restart 232s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 232s 1 by 1 by 2 MPI processor grid 232s restoring pair style lj/cubic from restart 232s 1000 atoms 232s read_restart CPU = 0.001 seconds 232s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 232s Neighbor list info ... 232s update: every = 1 steps, delay = 0 steps, check = yes 232s max neighbors/atom: 2000, page size: 100000 232s master list distance cutoff = 1.7475372 232s ghost atom cutoff = 1.7475372 232s binsize = 0.87376862, bins = 8 12 12 232s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 232s (1) pair lj/cubic, perpetual 232s attributes: half, newton on 232s pair build: half/bin/atomonly/newton 232s stencil: half/bin/3d 232s bin: standard 232s Setting up Verlet run ... 232s Unit style : lj 232s Current step : 0 232s Time step : 0.001 232s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 232s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 232s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 232s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 232s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 233s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 233s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 233s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 234s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 234s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 234s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 234s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 235s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 235s Loop time of 2.72355 on 2 procs for 10000 steps with 1000 atoms 235s 235s Performance: 317233.344 tau/day, 3671.682 timesteps/s, 3.672 Matom-step/s 235s 93.4% CPU use with 2 MPI tasks x 1 OpenMP threads 235s 235s MPI task timing breakdown: 235s Section | min time | avg time | max time |%varavg| %total 235s --------------------------------------------------------------- 235s Pair | 1.8276 | 1.828 | 1.8284 | 0.0 | 67.12 235s Neigh | 0.042127 | 0.042244 | 0.042362 | 0.1 | 1.55 235s Comm | 0.37274 | 0.37285 | 0.37297 | 0.0 | 13.69 235s Output | 0.00067174 | 0.0021799 | 0.0036881 | 3.2 | 0.08 235s Modify | 0.42497 | 0.42801 | 0.43104 | 0.5 | 15.72 235s Other | | 0.05029 | | | 1.85 235s 235s Nlocal: 500 ave 510 max 490 min 235s Histogram: 1 0 0 0 0 0 0 0 0 1 235s Nghost: 1216.5 ave 1227 max 1206 min 235s Histogram: 1 0 0 0 0 0 0 0 0 1 235s Neighs: 10311 ave 10520 max 10102 min 235s Histogram: 1 0 0 0 0 0 0 0 0 1 235s 235s Total # of neighbors = 20622 235s Ave neighs/atom = 20.622 235s Neighbor list builds = 95 235s Dangerous builds = 0 235s Total wall time: 0:00:08 235s LAMMPS (7 Feb 2024 - Update 1) 235s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 235s using 1 OpenMP thread(s) per MPI task 235s Lattice spacing in x,y,z = 1.4142135 2 2 235s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 235s 1 by 1 by 1 MPI processor grid 235s Created 1000 atoms 235s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 235s create_atoms CPU = 0.000 seconds 235s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 235s Neighbor list info ... 235s update: every = 1 steps, delay = 0 steps, check = yes 235s max neighbors/atom: 2000, page size: 100000 235s master list distance cutoff = 1.8475372 235s ghost atom cutoff = 1.8475372 235s binsize = 0.92376862, bins = 8 11 11 235s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 235s (1) pair lj/cubic, perpetual 235s attributes: half, newton on 235s pair build: half/bin/atomonly/newton 235s stencil: half/bin/3d 235s bin: standard 235s Setting up cg style minimization ... 235s Unit style : lj 235s Current step : 0 235s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 235s (src/min.cpp:219) 235s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 235s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 235s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 235s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 235s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 235s Loop time of 0.0535911 on 1 procs for 134 steps with 1000 atoms 235s 235s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 235s 235s Minimization stats: 235s Stopping criterion = force tolerance 235s Energy initial, next-to-last, final = 235s -6.29375358358556 -6.33442531515503 -6.33442531515503 235s Force two-norm initial, final = 3395.2895 5.6047601e-10 235s Force max component initial, final = 1960.2713 3.2666928e-10 235s Final line search alpha, max atom move = 1 3.2666928e-10 235s Iterations, force evaluations = 134 137 235s 235s MPI task timing breakdown: 235s Section | min time | avg time | max time |%varavg| %total 235s --------------------------------------------------------------- 235s Pair | 0.042831 | 0.042831 | 0.042831 | 0.0 | 79.92 235s Neigh | 0.0008297 | 0.0008297 | 0.0008297 | 0.0 | 1.55 235s Comm | 0.0012519 | 0.0012519 | 0.0012519 | 0.0 | 2.34 235s Output | 2.4639e-05 | 2.4639e-05 | 2.4639e-05 | 0.0 | 0.05 235s Modify | 0 | 0 | 0 | 0.0 | 0.00 235s Other | | 0.008654 | | | 16.15 235s 235s Nlocal: 1000 ave 1000 max 1000 min 235s Histogram: 1 0 0 0 0 0 0 0 0 0 235s Nghost: 1724 ave 1724 max 1724 min 235s Histogram: 1 0 0 0 0 0 0 0 0 0 235s Neighs: 21000 ave 21000 max 21000 min 235s Histogram: 1 0 0 0 0 0 0 0 0 0 235s 235s Total # of neighbors = 21000 235s Ave neighs/atom = 21 235s Neighbor list builds = 1 235s Dangerous builds = 0 235s System init for write_restart ... 235s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 235s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 235s using 1 OpenMP thread(s) per MPI task 235s Reading restart file ... 235s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 235s restoring atom style atomic from restart 235s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 235s 1 by 1 by 1 MPI processor grid 235s restoring pair style lj/cubic from restart 235s 1000 atoms 235s read_restart CPU = 0.001 seconds 235s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 235s Neighbor list info ... 235s update: every = 1 steps, delay = 0 steps, check = yes 235s max neighbors/atom: 2000, page size: 100000 235s master list distance cutoff = 1.7475372 235s ghost atom cutoff = 1.7475372 235s binsize = 0.87376862, bins = 8 12 12 235s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 240s (1) pair lj/cubic, perpetual 240s attributes: half, newton on 240s pair build: half/bin/atomonly/newton 240s stencil: half/bin/3d 240s bin: standard 240s Setting up Verlet run ... 240s Unit style : lj 240s Current step : 0 240s Time step : 0.001 240s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 240s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 240s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 240s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 240s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 240s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 240s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 240s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 240s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 240s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 240s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 240s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 240s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 240s Loop time of 4.93645 on 1 procs for 10000 steps with 1000 atoms 240s 240s Performance: 175024.399 tau/day, 2025.745 timesteps/s, 2.026 Matom-step/s 240s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 240s 240s MPI task timing breakdown: 240s Section | min time | avg time | max time |%varavg| %total 240s --------------------------------------------------------------- 240s Pair | 4.0317 | 4.0317 | 4.0317 | 0.0 | 81.67 240s Neigh | 0.16132 | 0.16132 | 0.16132 | 0.0 | 3.27 240s Comm | 0.098037 | 0.098037 | 0.098037 | 0.0 | 1.99 240s Output | 0.00055843 | 0.00055843 | 0.00055843 | 0.0 | 0.01 240s Modify | 0.59754 | 0.59754 | 0.59754 | 0.0 | 12.10 240s Other | | 0.04732 | | | 0.96 240s 240s Nlocal: 1000 ave 1000 max 1000 min 240s Histogram: 1 0 0 0 0 0 0 0 0 0 240s Nghost: 1886 ave 1886 max 1886 min 240s Histogram: 1 0 0 0 0 0 0 0 0 0 240s Neighs: 20874 ave 20874 max 20874 min 240s Histogram: 1 0 0 0 0 0 0 0 0 0 240s 240s Total # of neighbors = 20874 240s Ave neighs/atom = 20.874 240s Neighbor list builds = 188 240s Dangerous builds = 0 240s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 240s using 1 OpenMP thread(s) per MPI task 240s Reading restart file ... 240s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 240s restoring atom style atomic from restart 240s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 240s 1 by 1 by 1 MPI processor grid 240s restoring pair style lj/cubic from restart 240s 1000 atoms 240s read_restart CPU = 0.000 seconds 240s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 240s Neighbor list info ... 244s update: every = 1 steps, delay = 0 steps, check = yes 244s max neighbors/atom: 2000, page size: 100000 244s master list distance cutoff = 1.7475372 244s ghost atom cutoff = 1.7475372 244s binsize = 0.87376862, bins = 8 12 12 244s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 244s (1) pair lj/cubic, perpetual 244s attributes: half, newton on 244s pair build: half/bin/atomonly/newton 244s stencil: half/bin/3d 244s bin: standard 244s Setting up Verlet run ... 244s Unit style : lj 244s Current step : 0 244s Time step : 0.001 244s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 244s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 244s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 244s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 244s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 244s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 244s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 244s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 244s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 244s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 244s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 244s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 244s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 244s Loop time of 4.29972 on 1 procs for 10000 steps with 1000 atoms 244s 244s Performance: 200943.119 tau/day, 2325.731 timesteps/s, 2.326 Matom-step/s 244s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 244s 244s MPI task timing breakdown: 244s Section | min time | avg time | max time |%varavg| %total 244s --------------------------------------------------------------- 244s Pair | 3.567 | 3.567 | 3.567 | 0.0 | 82.96 244s Neigh | 0.009409 | 0.009409 | 0.009409 | 0.0 | 0.22 244s Comm | 0.085586 | 0.085586 | 0.085586 | 0.0 | 1.99 244s Output | 0.00050303 | 0.00050303 | 0.00050303 | 0.0 | 0.01 244s Modify | 0.59396 | 0.59396 | 0.59396 | 0.0 | 13.81 244s Other | | 0.04328 | | | 1.01 244s 244s Nlocal: 1000 ave 1000 max 1000 min 244s Histogram: 1 0 0 0 0 0 0 0 0 0 244s Nghost: 1724 ave 1724 max 1724 min 244s Histogram: 1 0 0 0 0 0 0 0 0 0 244s Neighs: 21000 ave 21000 max 21000 min 244s Histogram: 1 0 0 0 0 0 0 0 0 0 244s 244s Total # of neighbors = 21000 244s Ave neighs/atom = 21 244s Neighbor list builds = 11 244s Dangerous builds = 0 244s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 244s using 1 OpenMP thread(s) per MPI task 244s Reading restart file ... 244s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 244s restoring atom style atomic from restart 249s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 249s 1 by 1 by 1 MPI processor grid 249s restoring pair style lj/cubic from restart 249s 1000 atoms 249s read_restart CPU = 0.000 seconds 249s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 249s Neighbor list info ... 249s update: every = 1 steps, delay = 0 steps, check = yes 249s max neighbors/atom: 2000, page size: 100000 249s master list distance cutoff = 1.7475372 249s ghost atom cutoff = 1.7475372 249s binsize = 0.87376862, bins = 8 12 12 249s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 249s (1) pair lj/cubic, perpetual 249s attributes: half, newton on 249s pair build: half/bin/atomonly/newton 249s stencil: half/bin/3d 249s bin: standard 249s Setting up Verlet run ... 249s Unit style : lj 249s Current step : 0 249s Time step : 0.001 249s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 249s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 249s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 249s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 249s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 249s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 249s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 249s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 249s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 249s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 249s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 249s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 249s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 249s Loop time of 4.42027 on 1 procs for 10000 steps with 1000 atoms 249s 249s Performance: 195463.150 tau/day, 2262.305 timesteps/s, 2.262 Matom-step/s 249s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 249s 249s MPI task timing breakdown: 249s Section | min time | avg time | max time |%varavg| %total 249s --------------------------------------------------------------- 249s Pair | 3.6172 | 3.6172 | 3.6172 | 0.0 | 81.83 249s Neigh | 0.081786 | 0.081786 | 0.081786 | 0.0 | 1.85 249s Comm | 0.087103 | 0.087103 | 0.087103 | 0.0 | 1.97 249s Output | 0.00050471 | 0.00050471 | 0.00050471 | 0.0 | 0.01 249s Modify | 0.59001 | 0.59001 | 0.59001 | 0.0 | 13.35 249s Other | | 0.04369 | | | 0.99 249s 249s Nlocal: 1000 ave 1000 max 1000 min 249s Histogram: 1 0 0 0 0 0 0 0 0 0 249s Nghost: 1724 ave 1724 max 1724 min 249s Histogram: 1 0 0 0 0 0 0 0 0 0 249s Neighs: 20654 ave 20654 max 20654 min 249s Histogram: 1 0 0 0 0 0 0 0 0 0 249s 249s Total # of neighbors = 20654 249s Ave neighs/atom = 20.654 249s Neighbor list builds = 94 249s Dangerous builds = 0 249s Total wall time: 0:00:13 249s run: OK 249s autopkgtest [10:41:52]: test hugo: -----------------------] 249s autopkgtest [10:41:52]: test hugo: - - - - - - - - - - results - - - - - - - - - - 249s hugo PASS 250s autopkgtest [10:41:53]: test command1: preparing testbed 406s autopkgtest [10:44:29]: testbed dpkg architecture: arm64 406s autopkgtest [10:44:29]: testbed apt version: 3.0.0 407s autopkgtest [10:44:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 407s autopkgtest [10:44:30]: testbed release detected to be: questing 408s autopkgtest [10:44:31]: updating testbed package index (apt update) 408s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 408s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 408s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 408s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 408s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB] 409s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 409s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB] 409s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [219 kB] 409s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1509 kB] 409s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 409s Fetched 4149 kB in 1s (3352 kB/s) 410s Reading package lists... 411s autopkgtest [10:44:34]: upgrading testbed (apt dist-upgrade and autopurge) 411s Reading package lists... 411s Building dependency tree... 411s Reading state information... 412s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 412s Starting 2 pkgProblemResolver with broken count: 0 412s Done 413s Entering ResolveByKeep 413s 413s Calculating upgrade... 414s The following packages will be upgraded: 414s htop mtd-utils nano 414s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 414s Need to get 936 kB of archives. 414s After this operation, 727 kB of additional disk space will be used. 414s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 414s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 414s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 415s Fetched 936 kB in 1s (1386 kB/s) 415s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 415s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 415s Unpacking nano (8.4-1) over (8.3-1) ... 415s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 415s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 415s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 415s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 415s Setting up htop (3.4.1-4) ... 415s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 415s Setting up nano (8.4-1) ... 415s Installing new version of config file /etc/nanorc ... 415s Processing triggers for man-db (2.13.0-1) ... 417s Processing triggers for install-info (7.1.1-1) ... 418s Reading package lists... 418s Building dependency tree... 418s Reading state information... 418s Starting pkgProblemResolver with broken count: 0 418s Starting 2 pkgProblemResolver with broken count: 0 418s Done 419s Solving dependencies... 419s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 422s Reading package lists... 422s Building dependency tree... 422s Reading state information... 423s Starting pkgProblemResolver with broken count: 0 423s Starting 2 pkgProblemResolver with broken count: 0 423s Done 424s The following NEW packages will be installed: 424s autoconf automake autotools-dev cpp-14 cpp-14-aarch64-linux-gnu 424s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14 424s gcc-14-aarch64-linux-gnu gfortran-14 gfortran-14-aarch64-linux-gnu libaec0 424s libamd-comgr2 libamdhip64-5 libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 424s libdouble-conversion3 libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 424s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 424s libfftw3-double3 libfontconfig1 libgbm1 libgcc-14-dev libgfortran-14-dev 424s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 424s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 424s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 424s libibumad3 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 424s libjs-jquery libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev 424s liblammps0t64 liblapack3 liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 424s libmpc3 libmunge2 libnetcdf22 libnl-3-dev libnl-route-3-dev libnuma-dev 424s libogg0 libopengl0 libopenmpi-dev libopenmpi40 libpciaccess0 libpixman-1-0 424s libpmix-dev libpmix2t64 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 424s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 424s libtheoraenc1 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 424s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 424s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 424s libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 424s libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin mpi-default-dev 424s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 424s x11-common zlib1g-dev 424s 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded. 424s Need to get 185 MB of archives. 424s After this operation, 743 MB of additional disk space will be used. 424s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 m4 arm64 1.4.19-7 [244 kB] 424s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 autoconf all 2.72-3ubuntu1 [383 kB] 424s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 autotools-dev all 20220109.1 [44.9 kB] 424s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 automake all 1:1.17-3ubuntu1 [572 kB] 425s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB] 425s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 425s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [10.6 MB] 426s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14 arm64 14.2.0-19ubuntu2 [1026 B] 426s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 426s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 426s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 426s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libcc1-0 arm64 15-20250404-0ubuntu1 [49.1 kB] 426s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 426s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libitm1 arm64 15-20250404-0ubuntu1 [27.8 kB] 426s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libasan8 arm64 15-20250404-0ubuntu1 [2922 kB] 426s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 liblsan0 arm64 15-20250404-0ubuntu1 [1318 kB] 427s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libtsan2 arm64 15-20250404-0ubuntu1 [2692 kB] 427s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libubsan1 arm64 15-20250404-0ubuntu1 [1177 kB] 427s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libhwasan0 arm64 15-20250404-0ubuntu1 [1640 kB] 427s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libgcc-14-dev arm64 14.2.0-19ubuntu2 [2593 kB] 427s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [20.9 MB] 428s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14 arm64 14.2.0-19ubuntu2 [529 kB] 428s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 428s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran-14-dev arm64 14.2.0-19ubuntu2 [498 kB] 428s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [11.4 MB] 428s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14 arm64 14.2.0-19ubuntu2 [14.2 kB] 428s Get:27 http://ftpmaster.internal/ubuntu questing/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 428s Get:28 http://ftpmaster.internal/ubuntu questing/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 429s Get:29 http://ftpmaster.internal/ubuntu questing/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 429s Get:30 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 429s Get:31 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 429s Get:32 http://ftpmaster.internal/ubuntu questing/universe arm64 libamdhip64-5 arm64 5.7.1-5build1 [9707 kB] 429s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 429s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 429s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 429s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 429s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 429s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 429s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 429s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 429s Get:41 http://ftpmaster.internal/ubuntu questing/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 429s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 430s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10 [62.0 kB] 430s Get:44 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 430s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10 [14.7 kB] 430s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-dev arm64 2.1.12-stable-10 [283 kB] 430s Get:47 http://ftpmaster.internal/ubuntu questing/main arm64 librdmacm1t64 arm64 56.0-4ubuntu1 [71.4 kB] 430s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 430s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 430s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 430s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 430s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 430s Get:53 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 430s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 430s Get:55 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 430s Get:56 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 430s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 430s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 mesa-libgallium arm64 25.0.3-1ubuntu2 [9455 kB] 430s Get:59 http://ftpmaster.internal/ubuntu questing/main arm64 libgbm1 arm64 25.0.3-1ubuntu2 [33.7 kB] 430s Get:60 http://ftpmaster.internal/ubuntu questing/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 430s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1-mesa-dri arm64 25.0.3-1ubuntu2 [35.4 kB] 430s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 430s Get:63 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 430s Get:64 http://ftpmaster.internal/ubuntu questing/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 430s Get:65 http://ftpmaster.internal/ubuntu questing/main arm64 libglx-mesa0 arm64 25.0.3-1ubuntu2 [151 kB] 430s Get:66 http://ftpmaster.internal/ubuntu questing/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 430s Get:67 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 430s Get:68 http://ftpmaster.internal/ubuntu questing/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 430s Get:69 http://ftpmaster.internal/ubuntu questing/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 430s Get:70 http://ftpmaster.internal/ubuntu questing/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 430s Get:71 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 430s Get:72 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 430s Get:73 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 430s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 430s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 430s Get:76 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 430s Get:77 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 430s Get:78 http://ftpmaster.internal/ubuntu questing/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 430s Get:79 http://ftpmaster.internal/ubuntu questing/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 430s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 430s Get:81 http://ftpmaster.internal/ubuntu questing/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 430s Get:82 http://ftpmaster.internal/ubuntu questing/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 430s Get:83 http://ftpmaster.internal/ubuntu questing/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 430s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 430s Get:85 http://ftpmaster.internal/ubuntu questing/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 430s Get:86 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 430s Get:87 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 430s Get:88 http://ftpmaster.internal/ubuntu questing/main arm64 libibumad3 arm64 56.0-4ubuntu1 [31.3 kB] 430s Get:89 http://ftpmaster.internal/ubuntu questing/main arm64 libibmad5 arm64 56.0-4ubuntu1 [44.1 kB] 430s Get:90 http://ftpmaster.internal/ubuntu questing/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 430s Get:91 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 430s Get:92 http://ftpmaster.internal/ubuntu questing/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 430s Get:93 http://ftpmaster.internal/ubuntu questing/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 430s Get:94 http://ftpmaster.internal/ubuntu questing/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 430s Get:95 http://ftpmaster.internal/ubuntu questing/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 430s Get:96 http://ftpmaster.internal/ubuntu questing/universe arm64 proj-data all 9.5.1-1 [7924 kB] 431s Get:97 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 431s Get:98 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 431s Get:99 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 431s Get:100 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 431s Get:101 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 431s Get:102 http://ftpmaster.internal/ubuntu questing/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 431s Get:103 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 431s Get:104 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 431s Get:105 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 431s Get:106 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 431s Get:107 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 431s Get:108 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 431s Get:109 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 431s Get:110 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 431s Get:111 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 431s Get:112 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 431s Get:113 http://ftpmaster.internal/ubuntu questing/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu1 [24.0 MB] 432s Get:114 http://ftpmaster.internal/ubuntu questing/universe arm64 liblammps0t64 arm64 20240207+dfsg-3build3 [6834 kB] 433s Get:115 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 433s Get:116 http://ftpmaster.internal/ubuntu questing/main arm64 libnl-3-dev arm64 3.7.0-2 [105 kB] 433s Get:117 http://ftpmaster.internal/ubuntu questing/main arm64 libnl-route-3-dev arm64 3.7.0-2 [226 kB] 433s Get:118 http://ftpmaster.internal/ubuntu questing/main arm64 libibverbs-dev arm64 56.0-4ubuntu1 [705 kB] 434s Get:119 http://ftpmaster.internal/ubuntu questing/main arm64 libnuma-dev arm64 2.0.18-1build1 [39.6 kB] 434s Get:120 http://ftpmaster.internal/ubuntu questing/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 434s Get:121 http://ftpmaster.internal/ubuntu questing/main arm64 libltdl-dev arm64 2.5.4-4 [173 kB] 434s Get:122 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-dev arm64 2.12.0-1 [266 kB] 434s Get:123 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 434s Get:124 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix-dev arm64 5.0.6-5 [4055 kB] 434s Get:125 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 434s Get:126 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi-dev arm64 5.0.7-1 [1085 kB] 434s Get:127 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-dev arm64 1.18 [3324 B] 434s Get:128 http://ftpmaster.internal/ubuntu questing/universe arm64 liblammps-dev arm64 20240207+dfsg-3build3 [112 kB] 434s Get:129 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 434s Get:130 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-lammps arm64 20240207+dfsg-3build3 [70.5 kB] 435s Fetched 185 MB in 11s (17.4 MB/s) 435s Selecting previously unselected package m4. 435s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117821 files and directories currently installed.) 435s Preparing to unpack .../000-m4_1.4.19-7_arm64.deb ... 435s Unpacking m4 (1.4.19-7) ... 435s Selecting previously unselected package autoconf. 435s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 435s Unpacking autoconf (2.72-3ubuntu1) ... 435s Selecting previously unselected package autotools-dev. 435s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 435s Unpacking autotools-dev (20220109.1) ... 435s Selecting previously unselected package automake. 435s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 435s Unpacking automake (1:1.17-3ubuntu1) ... 435s Selecting previously unselected package libisl23:arm64. 435s Preparing to unpack .../004-libisl23_0.27-1_arm64.deb ... 435s Unpacking libisl23:arm64 (0.27-1) ... 435s Selecting previously unselected package libmpc3:arm64. 435s Preparing to unpack .../005-libmpc3_1.3.1-1build2_arm64.deb ... 435s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 435s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 435s Preparing to unpack .../006-cpp-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 435s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 436s Selecting previously unselected package cpp-14. 436s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_arm64.deb ... 436s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 436s Selecting previously unselected package fonts-dejavu-mono. 436s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 436s Unpacking fonts-dejavu-mono (2.37-8) ... 436s Selecting previously unselected package fonts-dejavu-core. 436s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 436s Unpacking fonts-dejavu-core (2.37-8) ... 436s Selecting previously unselected package fontconfig-config. 436s Preparing to unpack .../010-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 436s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 436s Selecting previously unselected package libcc1-0:arm64. 436s Preparing to unpack .../011-libcc1-0_15-20250404-0ubuntu1_arm64.deb ... 436s Unpacking libcc1-0:arm64 (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package libgomp1:arm64. 436s Preparing to unpack .../012-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 436s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package libitm1:arm64. 436s Preparing to unpack .../013-libitm1_15-20250404-0ubuntu1_arm64.deb ... 436s Unpacking libitm1:arm64 (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package libasan8:arm64. 436s Preparing to unpack .../014-libasan8_15-20250404-0ubuntu1_arm64.deb ... 436s Unpacking libasan8:arm64 (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package liblsan0:arm64. 436s Preparing to unpack .../015-liblsan0_15-20250404-0ubuntu1_arm64.deb ... 436s Unpacking liblsan0:arm64 (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package libtsan2:arm64. 436s Preparing to unpack .../016-libtsan2_15-20250404-0ubuntu1_arm64.deb ... 436s Unpacking libtsan2:arm64 (15-20250404-0ubuntu1) ... 436s Selecting previously unselected package libubsan1:arm64. 436s Preparing to unpack .../017-libubsan1_15-20250404-0ubuntu1_arm64.deb ... 436s Unpacking libubsan1:arm64 (15-20250404-0ubuntu1) ... 437s Selecting previously unselected package libhwasan0:arm64. 437s Preparing to unpack .../018-libhwasan0_15-20250404-0ubuntu1_arm64.deb ... 437s Unpacking libhwasan0:arm64 (15-20250404-0ubuntu1) ... 437s Selecting previously unselected package libgcc-14-dev:arm64. 437s Preparing to unpack .../019-libgcc-14-dev_14.2.0-19ubuntu2_arm64.deb ... 437s Unpacking libgcc-14-dev:arm64 (14.2.0-19ubuntu2) ... 437s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 437s Preparing to unpack .../020-gcc-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 437s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 437s Selecting previously unselected package gcc-14. 437s Preparing to unpack .../021-gcc-14_14.2.0-19ubuntu2_arm64.deb ... 437s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 437s Selecting previously unselected package libgfortran5:arm64. 437s Preparing to unpack .../022-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 437s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 437s Selecting previously unselected package libgfortran-14-dev:arm64. 437s Preparing to unpack .../023-libgfortran-14-dev_14.2.0-19ubuntu2_arm64.deb ... 437s Unpacking libgfortran-14-dev:arm64 (14.2.0-19ubuntu2) ... 437s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 437s Preparing to unpack .../024-gfortran-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 437s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 438s Selecting previously unselected package gfortran-14. 438s Preparing to unpack .../025-gfortran-14_14.2.0-19ubuntu2_arm64.deb ... 438s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 438s Selecting previously unselected package libaec0:arm64. 438s Preparing to unpack .../026-libaec0_1.1.3-1_arm64.deb ... 438s Unpacking libaec0:arm64 (1.1.3-1) ... 438s Selecting previously unselected package libllvm17t64:arm64. 438s Preparing to unpack .../027-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 438s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 438s Selecting previously unselected package libamd-comgr2:arm64. 438s Preparing to unpack .../028-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 438s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 439s Selecting previously unselected package libhsakmt1:arm64. 439s Preparing to unpack .../029-libhsakmt1_5.7.0-1build1_arm64.deb ... 439s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 439s Selecting previously unselected package libhsa-runtime64-1. 439s Preparing to unpack .../030-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 439s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 439s Selecting previously unselected package libamdhip64-5. 439s Preparing to unpack .../031-libamdhip64-5_5.7.1-5build1_arm64.deb ... 439s Unpacking libamdhip64-5 (5.7.1-5build1) ... 439s Selecting previously unselected package libblas3:arm64. 439s Preparing to unpack .../032-libblas3_3.12.1-2_arm64.deb ... 439s Unpacking libblas3:arm64 (3.12.1-2) ... 439s Selecting previously unselected package libfontconfig1:arm64. 439s Preparing to unpack .../033-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 439s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 439s Selecting previously unselected package libpixman-1-0:arm64. 439s Preparing to unpack .../034-libpixman-1-0_0.44.0-3_arm64.deb ... 439s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 439s Selecting previously unselected package libxcb-render0:arm64. 439s Preparing to unpack .../035-libxcb-render0_1.17.0-2_arm64.deb ... 439s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 439s Selecting previously unselected package libxcb-shm0:arm64. 439s Preparing to unpack .../036-libxcb-shm0_1.17.0-2_arm64.deb ... 439s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 439s Selecting previously unselected package libxrender1:arm64. 439s Preparing to unpack .../037-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 439s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 439s Selecting previously unselected package libcairo2:arm64. 439s Preparing to unpack .../038-libcairo2_1.18.4-1_arm64.deb ... 439s Unpacking libcairo2:arm64 (1.18.4-1) ... 439s Selecting previously unselected package libdeflate0:arm64. 439s Preparing to unpack .../039-libdeflate0_1.23-1_arm64.deb ... 439s Unpacking libdeflate0:arm64 (1.23-1) ... 439s Selecting previously unselected package libdouble-conversion3:arm64. 439s Preparing to unpack .../040-libdouble-conversion3_3.3.1-1_arm64.deb ... 439s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 439s Selecting previously unselected package libevent-2.1-7t64:arm64. 439s Preparing to unpack .../041-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... 439s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 440s Selecting previously unselected package libevent-extra-2.1-7t64:arm64. 440s Preparing to unpack .../042-libevent-extra-2.1-7t64_2.1.12-stable-10_arm64.deb ... 440s Unpacking libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10) ... 440s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 440s Preparing to unpack .../043-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 440s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 440s Selecting previously unselected package libevent-openssl-2.1-7t64:arm64. 440s Preparing to unpack .../044-libevent-openssl-2.1-7t64_2.1.12-stable-10_arm64.deb ... 440s Unpacking libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10) ... 440s Selecting previously unselected package libevent-dev. 440s Preparing to unpack .../045-libevent-dev_2.1.12-stable-10_arm64.deb ... 440s Unpacking libevent-dev (2.1.12-stable-10) ... 440s Selecting previously unselected package librdmacm1t64:arm64. 440s Preparing to unpack .../046-librdmacm1t64_56.0-4ubuntu1_arm64.deb ... 440s Unpacking librdmacm1t64:arm64 (56.0-4ubuntu1) ... 440s Selecting previously unselected package libfabric1:arm64. 440s Preparing to unpack .../047-libfabric1_1.17.0-3.1_arm64.deb ... 440s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 440s Selecting previously unselected package libfftw3-double3:arm64. 440s Preparing to unpack .../048-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 440s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 440s Selecting previously unselected package libwayland-server0:arm64. 440s Preparing to unpack .../049-libwayland-server0_1.23.1-3_arm64.deb ... 440s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 440s Selecting previously unselected package libx11-xcb1:arm64. 440s Preparing to unpack .../050-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 440s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 440s Selecting previously unselected package libxcb-dri3-0:arm64. 440s Preparing to unpack .../051-libxcb-dri3-0_1.17.0-2_arm64.deb ... 440s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 440s Selecting previously unselected package libxcb-present0:arm64. 440s Preparing to unpack .../052-libxcb-present0_1.17.0-2_arm64.deb ... 440s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 440s Selecting previously unselected package libxcb-randr0:arm64. 440s Preparing to unpack .../053-libxcb-randr0_1.17.0-2_arm64.deb ... 440s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 440s Selecting previously unselected package libxcb-sync1:arm64. 440s Preparing to unpack .../054-libxcb-sync1_1.17.0-2_arm64.deb ... 440s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 440s Selecting previously unselected package libxcb-xfixes0:arm64. 440s Preparing to unpack .../055-libxcb-xfixes0_1.17.0-2_arm64.deb ... 440s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 440s Selecting previously unselected package libxshmfence1:arm64. 440s Preparing to unpack .../056-libxshmfence1_1.3-1build5_arm64.deb ... 440s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 440s Selecting previously unselected package mesa-libgallium:arm64. 440s Preparing to unpack .../057-mesa-libgallium_25.0.3-1ubuntu2_arm64.deb ... 440s Unpacking mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 440s Selecting previously unselected package libgbm1:arm64. 440s Preparing to unpack .../058-libgbm1_25.0.3-1ubuntu2_arm64.deb ... 440s Unpacking libgbm1:arm64 (25.0.3-1ubuntu2) ... 440s Selecting previously unselected package libvulkan1:arm64. 441s Preparing to unpack .../059-libvulkan1_1.4.304.0-1_arm64.deb ... 441s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 441s Selecting previously unselected package libgl1-mesa-dri:arm64. 441s Preparing to unpack .../060-libgl1-mesa-dri_25.0.3-1ubuntu2_arm64.deb ... 441s Unpacking libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 441s Selecting previously unselected package libglvnd0:arm64. 441s Preparing to unpack .../061-libglvnd0_1.7.0-1build1_arm64.deb ... 441s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 441s Selecting previously unselected package libxcb-glx0:arm64. 441s Preparing to unpack .../062-libxcb-glx0_1.17.0-2_arm64.deb ... 441s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 441s Selecting previously unselected package libxxf86vm1:arm64. 441s Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 441s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 441s Selecting previously unselected package libglx-mesa0:arm64. 441s Preparing to unpack .../064-libglx-mesa0_25.0.3-1ubuntu2_arm64.deb ... 441s Unpacking libglx-mesa0:arm64 (25.0.3-1ubuntu2) ... 441s Selecting previously unselected package libglx0:arm64. 441s Preparing to unpack .../065-libglx0_1.7.0-1build1_arm64.deb ... 441s Unpacking libglx0:arm64 (1.7.0-1build1) ... 441s Selecting previously unselected package libgl1:arm64. 441s Preparing to unpack .../066-libgl1_1.7.0-1build1_arm64.deb ... 441s Unpacking libgl1:arm64 (1.7.0-1build1) ... 441s Selecting previously unselected package libgl2ps1.4. 441s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 441s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 441s Selecting previously unselected package libglew2.2:arm64. 441s Preparing to unpack .../068-libglew2.2_2.2.0-4build1_arm64.deb ... 441s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 441s Selecting previously unselected package libsz2:arm64. 441s Preparing to unpack .../069-libsz2_1.1.3-1_arm64.deb ... 441s Unpacking libsz2:arm64 (1.1.3-1) ... 441s Selecting previously unselected package libhdf5-310:arm64. 441s Preparing to unpack .../070-libhdf5-310_1.14.5+repack-3_arm64.deb ... 441s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 441s Selecting previously unselected package libhdf5-hl-310:arm64. 441s Preparing to unpack .../071-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 441s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 441s Selecting previously unselected package libhwloc15:arm64. 441s Preparing to unpack .../072-libhwloc15_2.12.0-1_arm64.deb ... 441s Unpacking libhwloc15:arm64 (2.12.0-1) ... 441s Selecting previously unselected package libjpeg-turbo8:arm64. 441s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 441s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 441s Selecting previously unselected package libjpeg8:arm64. 441s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 441s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 441s Selecting previously unselected package libjs-jquery. 441s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 441s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 441s Selecting previously unselected package libjs-jquery-ui. 441s Preparing to unpack .../076-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 441s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 441s Selecting previously unselected package libjsoncpp26:arm64. 441s Preparing to unpack .../077-libjsoncpp26_1.9.6-3_arm64.deb ... 441s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 441s Selecting previously unselected package libkim-api2:arm64. 441s Preparing to unpack .../078-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 441s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 442s Selecting previously unselected package liblapack3:arm64. 442s Preparing to unpack .../079-liblapack3_3.12.1-2_arm64.deb ... 442s Unpacking liblapack3:arm64 (3.12.1-2) ... 442s Selecting previously unselected package libnetcdf22:arm64. 442s Preparing to unpack .../080-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 442s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 442s Selecting previously unselected package libmunge2:arm64. 442s Preparing to unpack .../081-libmunge2_0.5.16-1_arm64.deb ... 442s Unpacking libmunge2:arm64 (0.5.16-1) ... 442s Selecting previously unselected package libpciaccess0:arm64. 442s Preparing to unpack .../082-libpciaccess0_0.17-3build1_arm64.deb ... 442s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 442s Selecting previously unselected package libxnvctrl0:arm64. 442s Preparing to unpack .../083-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 442s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 442s Selecting previously unselected package ocl-icd-libopencl1:arm64. 442s Preparing to unpack .../084-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 442s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 442s Selecting previously unselected package libhwloc-plugins:arm64. 442s Preparing to unpack .../085-libhwloc-plugins_2.12.0-1_arm64.deb ... 442s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 442s Selecting previously unselected package libpmix2t64:arm64. 442s Preparing to unpack .../086-libpmix2t64_5.0.6-5_arm64.deb ... 442s Unpacking libpmix2t64:arm64 (5.0.6-5) ... 442s Selecting previously unselected package libibumad3:arm64. 442s Preparing to unpack .../087-libibumad3_56.0-4ubuntu1_arm64.deb ... 442s Unpacking libibumad3:arm64 (56.0-4ubuntu1) ... 442s Selecting previously unselected package libibmad5:arm64. 442s Preparing to unpack .../088-libibmad5_56.0-4ubuntu1_arm64.deb ... 442s Unpacking libibmad5:arm64 (56.0-4ubuntu1) ... 442s Selecting previously unselected package libucx0:arm64. 442s Preparing to unpack .../089-libucx0_1.18.1+ds-2_arm64.deb ... 442s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 442s Selecting previously unselected package libopenmpi40:arm64. 442s Preparing to unpack .../090-libopenmpi40_5.0.7-1_arm64.deb ... 442s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 442s Selecting previously unselected package libpnetcdf6:arm64. 442s Preparing to unpack .../091-libpnetcdf6_1.14.0-2_arm64.deb ... 442s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 442s Selecting previously unselected package libvoro++1. 442s Preparing to unpack .../092-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 442s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 442s Selecting previously unselected package libogg0:arm64. 442s Preparing to unpack .../093-libogg0_1.3.5-3build1_arm64.deb ... 442s Unpacking libogg0:arm64 (1.3.5-3build1) ... 442s Selecting previously unselected package libopengl0:arm64. 442s Preparing to unpack .../094-libopengl0_1.7.0-1build1_arm64.deb ... 442s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 442s Selecting previously unselected package proj-data. 443s Preparing to unpack .../095-proj-data_9.5.1-1_all.deb ... 443s Unpacking proj-data (9.5.1-1) ... 443s Selecting previously unselected package libjbig0:arm64. 443s Preparing to unpack .../096-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 443s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 443s Selecting previously unselected package liblerc4:arm64. 443s Preparing to unpack .../097-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 443s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 443s Selecting previously unselected package libsharpyuv0:arm64. 443s Preparing to unpack .../098-libsharpyuv0_1.5.0-0.1_arm64.deb ... 443s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 443s Selecting previously unselected package libwebp7:arm64. 443s Preparing to unpack .../099-libwebp7_1.5.0-0.1_arm64.deb ... 443s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 443s Selecting previously unselected package libtiff6:arm64. 443s Preparing to unpack .../100-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 443s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 443s Selecting previously unselected package libproj25:arm64. 443s Preparing to unpack .../101-libproj25_9.5.1-1_arm64.deb ... 443s Unpacking libproj25:arm64 (9.5.1-1) ... 443s Selecting previously unselected package libtbbbind-2-5:arm64. 443s Preparing to unpack .../102-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 443s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 443s Selecting previously unselected package libtbbmalloc2:arm64. 443s Preparing to unpack .../103-libtbbmalloc2_2022.0.0-2_arm64.deb ... 443s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 443s Selecting previously unselected package libtbb12:arm64. 443s Preparing to unpack .../104-libtbb12_2022.0.0-2_arm64.deb ... 443s Unpacking libtbb12:arm64 (2022.0.0-2) ... 443s Selecting previously unselected package libtcl8.6:arm64. 443s Preparing to unpack .../105-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 443s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 443s Selecting previously unselected package libtheoradec1:arm64. 443s Preparing to unpack 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Unpacking libtk8.6:arm64 (8.6.16-1) ... 444s Selecting previously unselected package libvtk9.3:arm64. 444s Preparing to unpack .../112-libvtk9.3_9.3.0+dfsg1-4ubuntu1_arm64.deb ... 444s Unpacking libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 445s Selecting previously unselected package liblammps0t64:arm64. 445s Preparing to unpack .../113-liblammps0t64_20240207+dfsg-3build3_arm64.deb ... 445s Unpacking liblammps0t64:arm64 (20240207+dfsg-3build3) ... 445s Selecting previously unselected package openmpi-common. 445s Preparing to unpack .../114-openmpi-common_5.0.7-1_all.deb ... 445s Unpacking openmpi-common (5.0.7-1) ... 445s Selecting previously unselected package libnl-3-dev:arm64. 445s Preparing to unpack .../115-libnl-3-dev_3.7.0-2_arm64.deb ... 445s Unpacking libnl-3-dev:arm64 (3.7.0-2) ... 445s Selecting previously unselected package libnl-route-3-dev:arm64. 445s Preparing to unpack .../116-libnl-route-3-dev_3.7.0-2_arm64.deb ... 445s Unpacking libnl-route-3-dev:arm64 (3.7.0-2) ... 445s Selecting previously unselected package libibverbs-dev:arm64. 445s Preparing to unpack .../117-libibverbs-dev_56.0-4ubuntu1_arm64.deb ... 445s Unpacking libibverbs-dev:arm64 (56.0-4ubuntu1) ... 445s Selecting previously unselected package libnuma-dev:arm64. 445s Preparing to unpack .../118-libnuma-dev_2.0.18-1build1_arm64.deb ... 445s Unpacking libnuma-dev:arm64 (2.0.18-1build1) ... 445s Selecting previously unselected package libltdl7:arm64. 445s Preparing to unpack .../119-libltdl7_2.5.4-4_arm64.deb ... 445s Unpacking libltdl7:arm64 (2.5.4-4) ... 445s Selecting previously unselected package libltdl-dev:arm64. 445s Preparing to unpack .../120-libltdl-dev_2.5.4-4_arm64.deb ... 445s Unpacking libltdl-dev:arm64 (2.5.4-4) ... 445s Selecting previously unselected package libhwloc-dev:arm64. 445s Preparing to unpack .../121-libhwloc-dev_2.12.0-1_arm64.deb ... 445s Unpacking libhwloc-dev:arm64 (2.12.0-1) ... 445s Selecting previously unselected package zlib1g-dev:arm64. 445s Preparing to unpack .../122-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 445s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 445s Selecting previously unselected package libpmix-dev:arm64. 445s Preparing to unpack .../123-libpmix-dev_5.0.6-5_arm64.deb ... 445s Unpacking libpmix-dev:arm64 (5.0.6-5) ... 445s Selecting previously unselected package openmpi-bin. 445s Preparing to unpack .../124-openmpi-bin_5.0.7-1_arm64.deb ... 445s Unpacking openmpi-bin (5.0.7-1) ... 446s Selecting previously unselected package libopenmpi-dev:arm64. 446s Preparing to unpack .../125-libopenmpi-dev_5.0.7-1_arm64.deb ... 446s Unpacking libopenmpi-dev:arm64 (5.0.7-1) ... 446s Selecting previously unselected package mpi-default-dev. 446s Preparing to unpack .../126-mpi-default-dev_1.18_arm64.deb ... 446s Unpacking mpi-default-dev (1.18) ... 446s Selecting previously unselected package liblammps-dev. 446s Preparing to unpack .../127-liblammps-dev_20240207+dfsg-3build3_arm64.deb ... 446s 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Setting up mpi-default-bin (1.18) ... 447s Setting up liblammps0t64:arm64 (20240207+dfsg-3build3) ... 447s Setting up libopenmpi-dev:arm64 (5.0.7-1) ... 447s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 447s Setting up mpi-default-dev (1.18) ... 447s Setting up liblammps-dev (20240207+dfsg-3build3) ... 447s Setting up python3-lammps (20240207+dfsg-3build3) ... 447s Processing triggers for man-db (2.13.0-1) ... 448s Processing triggers for install-info (7.1.1-1) ... 448s Processing triggers for libc-bin (2.41-6ubuntu1) ... 492s autopkgtest [10:45:55]: test command1: cd python/examples; python3 demo.py 492s autopkgtest [10:45:55]: test command1: [----------------------- 492s LAMMPS (7 Feb 2024 - Update 1) 492s 492s Python output: 492s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 492s Temperature from compute = 0.7683848148006238 492s Energy from equal-style variable = -5.774392400140566 492s Velocity component from atom-style variable = -0.1669643026996425 492s Volume from get_thermo = 4738.213693437576 492s Natoms from get_natoms = 4000 492s Global coords from gather_atoms = 16.651271530416228 16.790010773016775 0.19047524160174037 492s Changed x[0][0] via scatter_atoms = 17.651271530416228 492s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 492s using 1 OpenMP thread(s) per MPI task 492s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 492s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 492s 1 by 1 by 1 MPI processor grid 492s Created 4000 atoms 492s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 492s create_atoms CPU = 0.001 seconds 492s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 492s Neighbor list info ... 492s update: every = 20 steps, delay = 0 steps, check = no 492s max neighbors/atom: 2000, page size: 100000 492s master list distance cutoff = 2.8 492s ghost atom cutoff = 2.8 492s binsize = 1.4, bins = 12 12 12 492s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 492s (1) pair lj/cut, perpetual 492s attributes: half, newton on 492s pair build: half/bin/atomonly/newton 492s stencil: half/bin/3d 492s bin: standard 492s Setting up Verlet run ... 492s Unit style : lj 492s Current step : 0 492s Time step : 0.005 492s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 492s Step Temp E_pair E_mol TotEng Press 492s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 492s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 492s Loop time of 0.234924 on 1 procs for 100 steps with 4000 atoms 492s 492s Performance: 183889.350 tau/day, 425.670 timesteps/s, 1.703 Matom-step/s 492s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 492s 492s MPI task timing breakdown: 492s Section | min time | avg time | max time |%varavg| %total 492s --------------------------------------------------------------- 492s Pair | 0.19763 | 0.19763 | 0.19763 | 0.0 | 84.12 492s Neigh | 0.027609 | 0.027609 | 0.027609 | 0.0 | 11.75 492s Comm | 0.0047815 | 0.0047815 | 0.0047815 | 0.0 | 2.04 492s Output | 3.4639e-05 | 3.4639e-05 | 3.4639e-05 | 0.0 | 0.01 492s Modify | 0.0042142 | 0.0042142 | 0.0042142 | 0.0 | 1.79 492s Other | | 0.0006583 | | | 0.28 492s 492s Nlocal: 4000 ave 4000 max 4000 min 492s Histogram: 1 0 0 0 0 0 0 0 0 0 492s Nghost: 5758 ave 5758 max 5758 min 492s Histogram: 1 0 0 0 0 0 0 0 0 0 492s Neighs: 150488 ave 150488 max 150488 min 492s Histogram: 1 0 0 0 0 0 0 0 0 0 492s 492s Total # of neighbors = 150488 492s Ave neighs/atom = 37.622 492s Neighbor list builds = 5 492s Dangerous builds not checked 492s Total wall time: 0:00:00 493s autopkgtest [10:45:56]: test command1: -----------------------] 493s autopkgtest [10:45:56]: test command1: - - - - - - - - - - results - - - - - - - - - - 493s command1 PASS 494s autopkgtest [10:45:57]: @@@@@@@@@@@@@@@@@@@@ summary 494s crack PASS 494s dipole PASS 494s ellipse PASS 494s flow PASS 494s friction PASS 494s hugo PASS 494s command1 PASS 499s nova [W] Using flock in prodstack6-arm64 499s Creating nova instance adt-questing-arm64-lammps-20250502-103742-juju-7f2275-prod-proposed-migration-environment-21-5c0915ed-228b-43ae-9a6f-548fbd40126f from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)... 499s nova [W] Timed out waiting for dcd90838-6851-4056-b0c0-c14e4a3f22cc to get deleted. 499s nova [W] Using flock in prodstack6-arm64 499s flock: timeout while waiting to get lock 499s Creating nova instance adt-questing-arm64-lammps-20250502-103742-juju-7f2275-prod-proposed-migration-environment-21-5c0915ed-228b-43ae-9a6f-548fbd40126f from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)... 499s nova [W] Timed out waiting for e776ecd3-a095-44eb-b5fc-057a20aeaa40 to get deleted.