0s autopkgtest [08:37:23]: starting date and time: 2025-05-02 08:37:23+0000 0s autopkgtest [08:37:23]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [08:37:23]: host juju-7f2275-prod-proposed-migration-environment-21; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dwi2f07k/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3.13 --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3.13/3.13.3-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-21@bos03-arm64-13.secgroup --name adt-questing-arm64-lammps-20250502-083723-juju-7f2275-prod-proposed-migration-environment-21-e51988ee-3ff4-432f-b31c-86a9599ab89c --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-21 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 111s autopkgtest [08:39:14]: testbed dpkg architecture: arm64 112s autopkgtest [08:39:15]: testbed apt version: 3.0.0 112s autopkgtest [08:39:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 112s autopkgtest [08:39:15]: testbed release detected to be: None 113s autopkgtest [08:39:16]: updating testbed package index (apt update) 113s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 114s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 114s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 114s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 114s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 114s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB] 115s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB] 115s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [219 kB] 115s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1509 kB] 115s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 115s Fetched 4149 kB in 2s (2121 kB/s) 117s Reading package lists... 117s autopkgtest [08:39:20]: upgrading testbed (apt dist-upgrade and autopurge) 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 120s Starting 2 pkgProblemResolver with broken count: 0 120s Done 121s Entering ResolveByKeep 121s 121s Calculating upgrade... 122s The following packages will be upgraded: 122s htop libpython3.13 libpython3.13-minimal libpython3.13-stdlib mtd-utils nano 122s python3.13 python3.13-gdbm python3.13-minimal 122s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Need to get 9181 kB of archives. 122s After this operation, 727 kB of additional disk space will be used. 122s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 python3.13 arm64 3.13.3-2 [739 kB] 123s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libpython3.13 arm64 3.13.3-2 [2281 kB] 123s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [2038 kB] 124s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 python3.13-minimal arm64 3.13.3-2 [2273 kB] 124s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libpython3.13-minimal arm64 3.13.3-2 [881 kB] 124s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 124s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 124s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 python3.13-gdbm arm64 3.13.3-2 [31.5 kB] 124s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 125s Fetched 9181 kB in 2s (4250 kB/s) 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 125s Preparing to unpack .../0-python3.13_3.13.3-2_arm64.deb ... 125s Unpacking python3.13 (3.13.3-2) over (3.13.3-1) ... 126s Preparing to unpack .../1-libpython3.13_3.13.3-2_arm64.deb ... 126s Unpacking libpython3.13:arm64 (3.13.3-2) over (3.13.3-1) ... 126s Preparing to unpack .../2-libpython3.13-stdlib_3.13.3-2_arm64.deb ... 126s Unpacking libpython3.13-stdlib:arm64 (3.13.3-2) over (3.13.3-1) ... 126s Preparing to unpack .../3-python3.13-minimal_3.13.3-2_arm64.deb ... 126s Unpacking python3.13-minimal (3.13.3-2) over (3.13.3-1) ... 126s Preparing to unpack .../4-libpython3.13-minimal_3.13.3-2_arm64.deb ... 126s Unpacking libpython3.13-minimal:arm64 (3.13.3-2) over (3.13.3-1) ... 126s Preparing to unpack .../5-nano_8.4-1_arm64.deb ... 127s Unpacking nano (8.4-1) over (8.3-1) ... 127s Preparing to unpack .../6-htop_3.4.1-4_arm64.deb ... 127s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 127s Preparing to unpack .../7-python3.13-gdbm_3.13.3-2_arm64.deb ... 127s Unpacking python3.13-gdbm (3.13.3-2) over (3.13.3-1) ... 127s Preparing to unpack .../8-mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 127s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 127s Setting up htop (3.4.1-4) ... 127s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 127s Setting up libpython3.13-minimal:arm64 (3.13.3-2) ... 127s Setting up nano (8.4-1) ... 127s Installing new version of config file /etc/nanorc ... 127s Setting up python3.13-minimal (3.13.3-2) ... 129s Setting up libpython3.13-stdlib:arm64 (3.13.3-2) ... 129s Setting up python3.13-gdbm (3.13.3-2) ... 129s Setting up libpython3.13:arm64 (3.13.3-2) ... 129s Setting up python3.13 (3.13.3-2) ... 130s Processing triggers for systemd (257.4-1ubuntu3) ... 131s Processing triggers for man-db (2.13.0-1) ... 132s Processing triggers for install-info (7.1.1-1) ... 133s Processing triggers for libc-bin (2.41-6ubuntu1) ... 133s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s Starting pkgProblemResolver with broken count: 0 134s Starting 2 pkgProblemResolver with broken count: 0 134s Done 135s Solving dependencies... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s autopkgtest [08:39:41]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 139s autopkgtest [08:39:42]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 152s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 152s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 152s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 152s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 152s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 152s gpgv: Can't check signature: No public key 152s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 160s autopkgtest [08:40:03]: testing package lammps version 20240207+dfsg-3build3 161s autopkgtest [08:40:04]: build not needed 181s autopkgtest [08:40:24]: test crack: preparing testbed 181s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s Starting pkgProblemResolver with broken count: 0 182s Starting 2 pkgProblemResolver with broken count: 0 182s Done 184s The following NEW packages will be installed: 184s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 184s libaec0 libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdeflate0 184s libdouble-conversion3 libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 184s libfontconfig1 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 184s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 184s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 184s libibmad5 libibumad3 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26 184s libkim-api2 liblammps0t64 liblapack3 liblerc4 libllvm17t64 libmunge2 184s libnetcdf22 libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 184s libpmix2t64 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 184s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 184s libtk8.6 libucx0 libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 184s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 184s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 184s libxrender1 libxshmfence1 libxss1 libxxf86vm1 mesa-libgallium 184s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 184s x11-common 184s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 184s Need to get 127 MB of archives. 184s After this operation, 575 MB of additional disk space will be used. 184s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 184s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 184s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 184s Get:4 http://ftpmaster.internal/ubuntu questing/universe arm64 lammps-data all 20240207+dfsg-3build3 [9732 kB] 185s Get:5 http://ftpmaster.internal/ubuntu questing/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 185s Get:6 http://ftpmaster.internal/ubuntu questing/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 187s Get:7 http://ftpmaster.internal/ubuntu questing/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 187s Get:8 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 187s Get:9 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 187s Get:10 http://ftpmaster.internal/ubuntu questing/universe arm64 libamdhip64-5 arm64 5.7.1-5build1 [9707 kB] 187s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 187s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 187s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 187s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 187s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 187s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 187s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 187s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 187s Get:19 http://ftpmaster.internal/ubuntu questing/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 187s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 187s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 librdmacm1t64 arm64 56.0-4ubuntu1 [71.4 kB] 187s Get:22 http://ftpmaster.internal/ubuntu questing/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 187s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 187s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 187s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 187s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 187s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 187s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 187s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 187s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 187s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 187s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 187s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 mesa-libgallium arm64 25.0.3-1ubuntu2 [9455 kB] 188s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libgbm1 arm64 25.0.3-1ubuntu2 [33.7 kB] 188s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 188s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 188s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1-mesa-dri arm64 25.0.3-1ubuntu2 [35.4 kB] 188s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 188s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 188s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 188s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 libglx-mesa0 arm64 25.0.3-1ubuntu2 [151 kB] 188s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 188s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 188s Get:44 http://ftpmaster.internal/ubuntu questing/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 188s Get:45 http://ftpmaster.internal/ubuntu questing/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 188s Get:46 http://ftpmaster.internal/ubuntu questing/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 188s Get:47 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 188s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 188s Get:49 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 188s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 188s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 188s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 188s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 188s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 188s Get:55 http://ftpmaster.internal/ubuntu questing/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 188s Get:56 http://ftpmaster.internal/ubuntu questing/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 188s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 188s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 188s Get:59 http://ftpmaster.internal/ubuntu questing/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 188s Get:60 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 188s Get:61 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 188s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 libibumad3 arm64 56.0-4ubuntu1 [31.3 kB] 188s Get:63 http://ftpmaster.internal/ubuntu questing/main arm64 libibmad5 arm64 56.0-4ubuntu1 [44.1 kB] 188s Get:64 http://ftpmaster.internal/ubuntu questing/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 188s Get:65 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 188s Get:66 http://ftpmaster.internal/ubuntu questing/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 188s Get:67 http://ftpmaster.internal/ubuntu questing/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 188s Get:68 http://ftpmaster.internal/ubuntu questing/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 188s Get:69 http://ftpmaster.internal/ubuntu questing/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 188s Get:70 http://ftpmaster.internal/ubuntu questing/universe arm64 proj-data all 9.5.1-1 [7924 kB] 188s Get:71 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 188s Get:72 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 188s Get:73 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 188s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 188s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 188s Get:76 http://ftpmaster.internal/ubuntu questing/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 188s Get:77 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 188s Get:78 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 188s Get:79 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 188s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 188s Get:81 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 188s Get:82 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 188s Get:83 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 188s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 188s Get:85 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 188s Get:86 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 189s Get:87 http://ftpmaster.internal/ubuntu questing/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu1 [24.0 MB] 190s Get:88 http://ftpmaster.internal/ubuntu questing/universe arm64 liblammps0t64 arm64 20240207+dfsg-3build3 [6834 kB] 190s Get:89 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 190s Get:90 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 190s Get:91 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 190s Get:92 http://ftpmaster.internal/ubuntu questing/universe arm64 lammps arm64 20240207+dfsg-3build3 [15.1 kB] 191s Fetched 127 MB in 6s (19.9 MB/s) 191s Selecting previously unselected package fonts-dejavu-mono. 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117821 files and directories currently installed.) 191s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 191s Unpacking fonts-dejavu-mono (2.37-8) ... 191s Selecting previously unselected package fonts-dejavu-core. 191s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 191s Unpacking fonts-dejavu-core (2.37-8) ... 191s Selecting previously unselected package fontconfig-config. 191s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 192s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 192s Selecting previously unselected package lammps-data. 192s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 192s Unpacking lammps-data (20240207+dfsg-3build3) ... 192s Selecting previously unselected package libaec0:arm64. 192s Preparing to unpack .../04-libaec0_1.1.3-1_arm64.deb ... 192s Unpacking libaec0:arm64 (1.1.3-1) ... 192s Selecting previously unselected package libllvm17t64:arm64. 192s Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 192s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 193s Selecting previously unselected package libamd-comgr2:arm64. 193s Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 193s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 193s Selecting previously unselected package libhsakmt1:arm64. 193s Preparing to unpack .../07-libhsakmt1_5.7.0-1build1_arm64.deb ... 193s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 193s Selecting previously unselected package libhsa-runtime64-1. 193s Preparing to unpack .../08-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 193s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 193s Selecting previously unselected package libamdhip64-5. 193s Preparing to unpack .../09-libamdhip64-5_5.7.1-5build1_arm64.deb ... 193s Unpacking libamdhip64-5 (5.7.1-5build1) ... 194s Selecting previously unselected package libblas3:arm64. 194s Preparing to unpack .../10-libblas3_3.12.1-2_arm64.deb ... 194s Unpacking libblas3:arm64 (3.12.1-2) ... 194s Selecting previously unselected package libfontconfig1:arm64. 194s Preparing to unpack .../11-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 194s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 194s Selecting previously unselected package libpixman-1-0:arm64. 194s Preparing to unpack .../12-libpixman-1-0_0.44.0-3_arm64.deb ... 194s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 194s Selecting previously unselected package libxcb-render0:arm64. 194s Preparing to unpack .../13-libxcb-render0_1.17.0-2_arm64.deb ... 194s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 194s Selecting previously unselected package libxcb-shm0:arm64. 194s Preparing to unpack .../14-libxcb-shm0_1.17.0-2_arm64.deb ... 194s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 194s Selecting previously unselected package libxrender1:arm64. 194s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 194s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 194s Selecting previously unselected package libcairo2:arm64. 194s Preparing to unpack .../16-libcairo2_1.18.4-1_arm64.deb ... 194s Unpacking libcairo2:arm64 (1.18.4-1) ... 194s Selecting previously unselected package libdeflate0:arm64. 194s Preparing to unpack .../17-libdeflate0_1.23-1_arm64.deb ... 194s Unpacking libdeflate0:arm64 (1.23-1) ... 194s Selecting previously unselected package libdouble-conversion3:arm64. 194s Preparing to unpack .../18-libdouble-conversion3_3.3.1-1_arm64.deb ... 194s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 194s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 194s Preparing to unpack .../19-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 194s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 194s Selecting previously unselected package librdmacm1t64:arm64. 194s Preparing to unpack .../20-librdmacm1t64_56.0-4ubuntu1_arm64.deb ... 194s Unpacking librdmacm1t64:arm64 (56.0-4ubuntu1) ... 194s Selecting previously unselected package libfabric1:arm64. 194s Preparing to unpack .../21-libfabric1_1.17.0-3.1_arm64.deb ... 194s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 194s Selecting previously unselected package libgomp1:arm64. 194s Preparing to unpack .../22-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 194s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 194s Selecting previously unselected package libfftw3-double3:arm64. 194s Preparing to unpack .../23-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 194s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 194s Selecting previously unselected package libwayland-server0:arm64. 194s Preparing to unpack .../24-libwayland-server0_1.23.1-3_arm64.deb ... 194s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 194s Selecting previously unselected package libx11-xcb1:arm64. 194s Preparing to unpack .../25-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 194s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 194s Selecting previously unselected package libxcb-dri3-0:arm64. 194s Preparing to unpack .../26-libxcb-dri3-0_1.17.0-2_arm64.deb ... 194s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 194s Selecting previously unselected package libxcb-present0:arm64. 195s Preparing to unpack .../27-libxcb-present0_1.17.0-2_arm64.deb ... 195s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 195s Selecting previously unselected package libxcb-randr0:arm64. 195s Preparing to unpack .../28-libxcb-randr0_1.17.0-2_arm64.deb ... 195s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 195s Selecting previously unselected package libxcb-sync1:arm64. 195s Preparing to unpack .../29-libxcb-sync1_1.17.0-2_arm64.deb ... 195s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 195s Selecting previously unselected package libxcb-xfixes0:arm64. 195s Preparing to unpack .../30-libxcb-xfixes0_1.17.0-2_arm64.deb ... 195s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 195s Selecting previously unselected package libxshmfence1:arm64. 195s Preparing to unpack .../31-libxshmfence1_1.3-1build5_arm64.deb ... 195s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 195s Selecting previously unselected package mesa-libgallium:arm64. 195s Preparing to unpack .../32-mesa-libgallium_25.0.3-1ubuntu2_arm64.deb ... 195s Unpacking mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 195s Selecting previously unselected package libgbm1:arm64. 195s Preparing to unpack .../33-libgbm1_25.0.3-1ubuntu2_arm64.deb ... 195s Unpacking libgbm1:arm64 (25.0.3-1ubuntu2) ... 195s Selecting previously unselected package libgfortran5:arm64. 195s Preparing to unpack .../34-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 195s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 195s Selecting previously unselected package libvulkan1:arm64. 195s Preparing to unpack .../35-libvulkan1_1.4.304.0-1_arm64.deb ... 195s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 195s Selecting previously unselected package libgl1-mesa-dri:arm64. 195s Preparing to unpack .../36-libgl1-mesa-dri_25.0.3-1ubuntu2_arm64.deb ... 195s Unpacking libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 195s Selecting previously unselected package libglvnd0:arm64. 195s Preparing to unpack .../37-libglvnd0_1.7.0-1build1_arm64.deb ... 195s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 195s Selecting previously unselected package libxcb-glx0:arm64. 195s Preparing to unpack .../38-libxcb-glx0_1.17.0-2_arm64.deb ... 195s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 195s Selecting previously unselected package libxxf86vm1:arm64. 195s Preparing to unpack .../39-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 195s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 195s Selecting previously unselected package libglx-mesa0:arm64. 195s Preparing to unpack .../40-libglx-mesa0_25.0.3-1ubuntu2_arm64.deb ... 195s Unpacking libglx-mesa0:arm64 (25.0.3-1ubuntu2) ... 196s Selecting previously unselected package libglx0:arm64. 196s Preparing to unpack .../41-libglx0_1.7.0-1build1_arm64.deb ... 196s Unpacking libglx0:arm64 (1.7.0-1build1) ... 196s Selecting previously unselected package libgl1:arm64. 196s Preparing to unpack .../42-libgl1_1.7.0-1build1_arm64.deb ... 196s Unpacking libgl1:arm64 (1.7.0-1build1) ... 196s Selecting previously unselected package libgl2ps1.4. 196s Preparing to unpack .../43-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 196s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 196s Selecting previously unselected package libglew2.2:arm64. 196s Preparing to unpack .../44-libglew2.2_2.2.0-4build1_arm64.deb ... 196s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 196s Selecting previously unselected package libsz2:arm64. 196s Preparing to unpack .../45-libsz2_1.1.3-1_arm64.deb ... 196s Unpacking libsz2:arm64 (1.1.3-1) ... 196s Selecting previously unselected package libhdf5-310:arm64. 196s Preparing to unpack .../46-libhdf5-310_1.14.5+repack-3_arm64.deb ... 196s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 196s Selecting previously unselected package libhdf5-hl-310:arm64. 196s Preparing to unpack .../47-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 196s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 196s Selecting previously unselected package libhwloc15:arm64. 196s Preparing to unpack .../48-libhwloc15_2.12.0-1_arm64.deb ... 196s Unpacking libhwloc15:arm64 (2.12.0-1) ... 196s Selecting previously unselected package libjpeg-turbo8:arm64. 196s Preparing to unpack .../49-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 196s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 196s Selecting previously unselected package libjpeg8:arm64. 196s Preparing to unpack .../50-libjpeg8_8c-2ubuntu11_arm64.deb ... 196s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 196s Selecting previously unselected package libjsoncpp26:arm64. 196s Preparing to unpack .../51-libjsoncpp26_1.9.6-3_arm64.deb ... 196s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 196s Selecting previously unselected package libkim-api2:arm64. 196s Preparing to unpack .../52-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 196s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 196s Selecting previously unselected package liblapack3:arm64. 196s Preparing to unpack .../53-liblapack3_3.12.1-2_arm64.deb ... 196s Unpacking liblapack3:arm64 (3.12.1-2) ... 196s Selecting previously unselected package libnetcdf22:arm64. 196s Preparing to unpack .../54-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 196s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 197s Selecting previously unselected package libmunge2:arm64. 197s Preparing to unpack .../55-libmunge2_0.5.16-1_arm64.deb ... 197s Unpacking libmunge2:arm64 (0.5.16-1) ... 197s Selecting previously unselected package libpciaccess0:arm64. 197s Preparing to unpack .../56-libpciaccess0_0.17-3build1_arm64.deb ... 197s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 197s Selecting previously unselected package libxnvctrl0:arm64. 197s Preparing to unpack .../57-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 197s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 197s Selecting previously unselected package ocl-icd-libopencl1:arm64. 197s Preparing to unpack .../58-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 197s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 197s Selecting previously unselected package libhwloc-plugins:arm64. 197s Preparing to unpack .../59-libhwloc-plugins_2.12.0-1_arm64.deb ... 197s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 197s Selecting previously unselected package libpmix2t64:arm64. 197s Preparing to unpack .../60-libpmix2t64_5.0.6-5_arm64.deb ... 197s Unpacking libpmix2t64:arm64 (5.0.6-5) ... 197s Selecting previously unselected package libibumad3:arm64. 197s Preparing to unpack .../61-libibumad3_56.0-4ubuntu1_arm64.deb ... 197s Unpacking libibumad3:arm64 (56.0-4ubuntu1) ... 197s Selecting previously unselected package libibmad5:arm64. 197s Preparing to unpack .../62-libibmad5_56.0-4ubuntu1_arm64.deb ... 197s Unpacking libibmad5:arm64 (56.0-4ubuntu1) ... 197s Selecting previously unselected package libucx0:arm64. 197s Preparing to unpack .../63-libucx0_1.18.1+ds-2_arm64.deb ... 197s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 197s Selecting previously unselected package libopenmpi40:arm64. 197s Preparing to unpack .../64-libopenmpi40_5.0.7-1_arm64.deb ... 197s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 197s Selecting previously unselected package libpnetcdf6:arm64. 197s Preparing to unpack .../65-libpnetcdf6_1.14.0-2_arm64.deb ... 197s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 197s Selecting previously unselected package libvoro++1. 197s Preparing to unpack .../66-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 197s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 197s Selecting previously unselected package libogg0:arm64. 197s Preparing to unpack .../67-libogg0_1.3.5-3build1_arm64.deb ... 197s Unpacking libogg0:arm64 (1.3.5-3build1) ... 197s Selecting previously unselected package libopengl0:arm64. 198s Preparing to unpack .../68-libopengl0_1.7.0-1build1_arm64.deb ... 198s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 198s Selecting previously unselected package proj-data. 198s Preparing to unpack .../69-proj-data_9.5.1-1_all.deb ... 198s Unpacking proj-data (9.5.1-1) ... 198s Selecting previously unselected package libjbig0:arm64. 198s Preparing to unpack .../70-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 198s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 198s Selecting previously unselected package liblerc4:arm64. 198s Preparing to unpack .../71-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 198s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 198s Selecting previously unselected package libsharpyuv0:arm64. 198s Preparing to unpack .../72-libsharpyuv0_1.5.0-0.1_arm64.deb ... 198s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 198s Selecting previously unselected package libwebp7:arm64. 198s Preparing to unpack .../73-libwebp7_1.5.0-0.1_arm64.deb ... 198s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 198s Selecting previously unselected package libtiff6:arm64. 198s Preparing to unpack .../74-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 198s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 198s Selecting previously unselected package libproj25:arm64. 198s Preparing to unpack .../75-libproj25_9.5.1-1_arm64.deb ... 198s Unpacking libproj25:arm64 (9.5.1-1) ... 198s Selecting previously unselected package libtbbbind-2-5:arm64. 198s Preparing to unpack .../76-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 198s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 198s Selecting previously unselected package libtbbmalloc2:arm64. 198s Preparing to unpack .../77-libtbbmalloc2_2022.0.0-2_arm64.deb ... 198s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 198s Selecting previously unselected package libtbb12:arm64. 198s Preparing to unpack .../78-libtbb12_2022.0.0-2_arm64.deb ... 198s Unpacking libtbb12:arm64 (2022.0.0-2) ... 198s Selecting previously unselected package libtcl8.6:arm64. 198s Preparing to unpack .../79-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 198s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 198s Selecting previously unselected package libtheoradec1:arm64. 198s Preparing to unpack .../80-libtheoradec1_1.2.0~alpha1+dfsg-6_arm64.deb ... 198s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 198s Selecting previously unselected package libtheoraenc1:arm64. 198s Preparing to unpack .../81-libtheoraenc1_1.2.0~alpha1+dfsg-6_arm64.deb ... 198s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 199s Selecting previously unselected package libxft2:arm64. 199s Preparing to unpack .../82-libxft2_2.3.6-1build1_arm64.deb ... 199s Unpacking libxft2:arm64 (2.3.6-1build1) ... 199s Selecting previously unselected package x11-common. 199s Preparing to unpack .../83-x11-common_1%3a7.7+23ubuntu4_all.deb ... 199s Unpacking x11-common (1:7.7+23ubuntu4) ... 199s Selecting previously unselected package libxss1:arm64. 199s Preparing to unpack .../84-libxss1_1%3a1.2.3-1build3_arm64.deb ... 199s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 199s Selecting previously unselected package libtk8.6:arm64. 199s Preparing to unpack .../85-libtk8.6_8.6.16-1_arm64.deb ... 199s Unpacking libtk8.6:arm64 (8.6.16-1) ... 199s Selecting previously unselected package libvtk9.3:arm64. 199s Preparing to unpack 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(20240207+dfsg-3build3) ... 200s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... 200s Setting up libtbbmalloc2:arm64 (2022.0.0-2) ... 200s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 200s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 200s Setting up libwayland-server0:arm64 (1.23.1-3) ... 200s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... 200s Setting up libpciaccess0:arm64 (0.17-3build1) ... 200s Setting up libdouble-conversion3:arm64 (3.3.1-1) ... 200s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ... 200s Setting up libogg0:arm64 (1.3.5-3build1) ... 200s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 200s Setting up proj-data (9.5.1-1) ... 200s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 200s Setting up lammps-data (20240207+dfsg-3build3) ... 200s Setting up libxcb-render0:arm64 (1.17.0-2) ... 200s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 200s Setting up libglvnd0:arm64 (1.7.0-1build1) ... 200s Setting up libxcb-glx0:arm64 (1.17.0-2) ... 200s Setting up x11-common (1:7.7+23ubuntu4) ... 201s Setting up libibumad3:arm64 (56.0-4ubuntu1) ... 201s Setting up libdeflate0:arm64 (1.23-1) ... 201s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 201s Setting up libibmad5:arm64 (56.0-4ubuntu1) ... 201s Setting up libgomp1:arm64 (15-20250404-0ubuntu1) ... 201s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 201s Setting up libaec0:arm64 (1.1.3-1) ... 201s Setting up libopengl0:arm64 (1.7.0-1build1) ... 201s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 201s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 201s Setting up libxcb-present0:arm64 (1.17.0-2) ... 201s Setting up libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 201s Setting up libblas3:arm64 (3.12.1-2) ... 201s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 201s Setting up libmunge2:arm64 (0.5.16-1) ... 201s Setting up libllvm17t64:arm64 (1:17.0.6-21) ... 201s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 201s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 201s Setting up fonts-dejavu-mono (2.37-8) ... 201s Setting up libhwloc15:arm64 (2.12.0-1) ... 201s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 201s Setting up fonts-dejavu-core (2.37-8) ... 201s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 201s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 201s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 201s Setting up libvulkan1:arm64 (1.4.304.0-1) ... 201s Setting up libwebp7:arm64 (1.5.0-0.1) ... 201s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 201s Setting up libxshmfence1:arm64 (1.3-1build5) ... 201s Setting up libxcb-randr0:arm64 (1.17.0-2) ... 201s Setting up openmpi-common (5.0.7-1) ... 201s Setting up librdmacm1t64:arm64 (56.0-4ubuntu1) ... 201s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 201s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 201s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 201s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 201s Setting up libsz2:arm64 (1.1.3-1) ... 201s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 201s Setting up libfabric1:arm64 (1.17.0-3.1) ... 201s Setting up mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 201s Setting up liblapack3:arm64 (3.12.1-2) ... 201s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 201s Setting up libgbm1:arm64 (25.0.3-1ubuntu2) ... 201s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 201s Setting up libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 201s Setting up libkim-api2:arm64 (2.3.0-1ubuntu1) ... 201s Setting up libhwloc-plugins:arm64 (2.12.0-1) ... 201s Setting up libtbbbind-2-5:arm64 (2022.0.0-2) ... 201s Setting up libpmix2t64:arm64 (5.0.6-5) ... 201s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 201s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 201s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 201s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 201s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 201s Setting up libxft2:arm64 (2.3.6-1build1) ... 201s Setting up libglx-mesa0:arm64 (25.0.3-1ubuntu2) ... 201s Setting up libglx0:arm64 (1.7.0-1build1) ... 201s Setting up libproj25:arm64 (9.5.1-1) ... 201s Setting up libtk8.6:arm64 (8.6.16-1) ... 201s Setting up libnetcdf22:arm64 (1:4.9.3-1) ... 201s Setting up libtbb12:arm64 (2022.0.0-2) ... 201s Setting up libcairo2:arm64 (1.18.4-1) ... 201s Setting up libgl1:arm64 (1.7.0-1build1) ... 201s Setting up libamdhip64-5 (5.7.1-5build1) ... 201s Setting up libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 201s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 201s Setting up libucx0:arm64 (1.18.1+ds-2) ... 201s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 201s Setting up libopenmpi40:arm64 (5.0.7-1) ... 201s Setting up libpnetcdf6:arm64 (1.14.0-2) ... 201s Setting up libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 201s Setting up openmpi-bin (5.0.7-1) ... 201s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 201s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 201s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 201s Setting up mpi-default-bin (1.18) ... 201s Setting up liblammps0t64:arm64 (20240207+dfsg-3build3) ... 201s Setting up lammps (20240207+dfsg-3build3) ... 201s Processing triggers for man-db (2.13.0-1) ... 202s Processing triggers for libc-bin (2.41-6ubuntu1) ... 203s autopkgtest [08:40:46]: test crack: [----------------------- 204s LAMMPS (7 Feb 2024 - Update 1) 204s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 204s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 204s using 1 OpenMP thread(s) per MPI task 204s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 204s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 204s 2 by 1 by 1 MPI processor grid 204s Created 8141 atoms 204s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 204s create_atoms CPU = 0.001 seconds 204s 302 atoms in group lower 204s 302 atoms in group upper 204s 604 atoms in group boundary 204s 7537 atoms in group mobile 204s 841 atoms in group leftupper 204s 841 atoms in group leftlower 204s Setting atom values ... 204s 841 settings made for type 204s Setting atom values ... 204s 841 settings made for type 204s Setting atom values ... 204s 302 settings made for type 204s Setting atom values ... 204s 302 settings made for type 204s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 204s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 204s Neighbor list info ... 204s update: every = 1 steps, delay = 5 steps, check = yes 204s max neighbors/atom: 2000, page size: 100000 204s master list distance cutoff = 2.8 204s ghost atom cutoff = 2.8 204s binsize = 1.4, bins = 80 56 1 204s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 204s (1) pair lj/cut, perpetual 204s attributes: half, newton on 204s pair build: half/bin/atomonly/newton 204s stencil: half/bin/2d 204s bin: standard 204s Setting up Verlet run ... 204s Unit style : lj 204s Current step : 0 204s Time step : 0.003 204s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 204s Step Temp E_pair E_mol TotEng Press Volume 204s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 204s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 204s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 204s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 204s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 204s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 204s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 204s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 204s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 205s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 205s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 205s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 205s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 205s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 205s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 205s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 205s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 206s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 206s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 206s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 206s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 206s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 206s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 206s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 206s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 206s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 206s Loop time of 2.95029 on 2 procs for 5000 steps with 8141 atoms 206s 206s Performance: 439279.208 tau/day, 1694.750 timesteps/s, 13.797 Matom-step/s 206s 96.3% CPU use with 2 MPI tasks x 1 OpenMP threads 206s 206s MPI task timing breakdown: 206s Section | min time | avg time | max time |%varavg| %total 206s --------------------------------------------------------------- 206s Pair | 2.1946 | 2.2093 | 2.224 | 1.0 | 74.88 206s Neigh | 0.11358 | 0.11806 | 0.12255 | 1.3 | 4.00 206s Comm | 0.28653 | 0.30563 | 0.32472 | 3.5 | 10.36 206s Output | 0.0010511 | 0.0018316 | 0.0026122 | 1.8 | 0.06 206s Modify | 0.21918 | 0.22003 | 0.22089 | 0.2 | 7.46 206s Other | | 0.09544 | | | 3.24 206s 206s Nlocal: 4070.5 ave 4085 max 4056 min 206s Histogram: 1 0 0 0 0 0 0 0 0 1 206s Nghost: 207 ave 208 max 206 min 206s Histogram: 1 0 0 0 0 0 0 0 0 1 206s Neighs: 35700 ave 35927 max 35473 min 206s Histogram: 1 0 0 0 0 0 0 0 0 1 206s 206s Total # of neighbors = 71400 206s Ave neighs/atom = 8.7704213 206s Neighbor list builds = 106 206s Dangerous builds = 0 206s Total wall time: 0:00:02 207s LAMMPS (7 Feb 2024 - Update 1) 211s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 211s using 1 OpenMP thread(s) per MPI task 211s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 211s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 211s 1 by 1 by 1 MPI processor grid 211s Created 8141 atoms 211s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 211s create_atoms CPU = 0.002 seconds 211s 302 atoms in group lower 211s 302 atoms in group upper 211s 604 atoms in group boundary 211s 7537 atoms in group mobile 211s 841 atoms in group leftupper 211s 841 atoms in group leftlower 211s Setting atom values ... 211s 841 settings made for type 211s Setting atom values ... 211s 841 settings made for type 211s Setting atom values ... 211s 302 settings made for type 211s Setting atom values ... 211s 302 settings made for type 211s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 211s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 211s Neighbor list info ... 211s update: every = 1 steps, delay = 5 steps, check = yes 211s max neighbors/atom: 2000, page size: 100000 211s master list distance cutoff = 2.8 211s ghost atom cutoff = 2.8 211s binsize = 1.4, bins = 80 56 1 211s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 211s (1) pair lj/cut, perpetual 211s attributes: half, newton on 211s pair build: half/bin/atomonly/newton 211s stencil: half/bin/2d 211s bin: standard 211s Setting up Verlet run ... 211s Unit style : lj 211s Current step : 0 211s Time step : 0.003 211s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 211s Step Temp E_pair E_mol TotEng Press Volume 211s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 211s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 211s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 211s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 211s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 211s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 211s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 211s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 211s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 211s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 211s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 211s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 211s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 211s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 211s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 211s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 211s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 211s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 211s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 211s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 211s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 211s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 211s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 212s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 212s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 212s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 212s Loop time of 5.19624 on 1 procs for 5000 steps with 8141 atoms 212s 212s Performance: 249411.282 tau/day, 962.235 timesteps/s, 7.834 Matom-step/s 212s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 212s 212s MPI task timing breakdown: 212s Section | min time | avg time | max time |%varavg| %total 212s --------------------------------------------------------------- 212s Pair | 4.3832 | 4.3832 | 4.3832 | 0.0 | 84.35 212s Neigh | 0.20303 | 0.20303 | 0.20303 | 0.0 | 3.91 212s Comm | 0.0045149 | 0.0045149 | 0.0045149 | 0.0 | 0.09 212s Output | 0.0013368 | 0.0013368 | 0.0013368 | 0.0 | 0.03 212s Modify | 0.45772 | 0.45772 | 0.45772 | 0.0 | 8.81 212s Other | | 0.1464 | | | 2.82 212s 212s Nlocal: 8141 ave 8141 max 8141 min 212s Histogram: 1 0 0 0 0 0 0 0 0 0 212s Nghost: 0 ave 0 max 0 min 212s Histogram: 1 0 0 0 0 0 0 0 0 0 212s Neighs: 71389 ave 71389 max 71389 min 212s Histogram: 1 0 0 0 0 0 0 0 0 0 212s 212s Total # of neighbors = 71389 212s Ave neighs/atom = 8.7690701 212s Neighbor list builds = 100 212s Dangerous builds = 0 212s Total wall time: 0:00:05 212s run: OK 212s autopkgtest [08:40:55]: test crack: -----------------------] 213s crack PASS 213s autopkgtest [08:40:56]: test crack: - - - - - - - - - - results - - - - - - - - - - 213s autopkgtest [08:40:56]: test dipole: preparing testbed 213s Reading package lists... 214s Building dependency tree... 214s Reading state information... 214s Starting pkgProblemResolver with broken count: 0 214s Starting 2 pkgProblemResolver with broken count: 0 214s Done 215s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 216s autopkgtest [08:40:59]: test dipole: [----------------------- 216s LAMMPS (7 Feb 2024 - Update 1) 216s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 216s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 216s using 1 OpenMP thread(s) per MPI task 216s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 216s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 216s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 216s 2 by 1 by 1 MPI processor grid 216s Created 200 atoms 216s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 216s create_atoms CPU = 0.001 seconds 216s Setting atom values ... 216s 200 settings made for mass 216s Setting atom values ... 216s 200 settings made for dipole/random 216s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 216s Neighbor list info ... 216s update: every = 1 steps, delay = 0 steps, check = yes 216s max neighbors/atom: 2000, page size: 100000 216s master list distance cutoff = 2.8 216s ghost atom cutoff = 2.8 216s binsize = 1.4, bins = 13 13 2 216s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 216s (1) pair lj/cut/dipole/cut, perpetual 216s attributes: half, newton on 216s pair build: half/bin/atomonly/newton 216s stencil: half/bin/2d 216s bin: standard 216s Setting up Verlet run ... 216s Unit style : lj 216s Current step : 0 216s Time step : 0.005 216s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 216s Step Temp E_pair c_erot TotEng Press 216s 0 0 -2.0965715 0 -2.0965715 -2.4759659 216s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 216s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 216s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 216s 2000 0.44906518 -2.8037483 0.24422519 -2.3569284 0.15010152 216s 2500 0.46056435 -2.8144144 0.25015831 -2.3561529 -0.38358808 216s 3000 0.4348415 -2.7856362 0.24988108 -2.3529689 0.086257242 216s 3500 0.41528069 -2.7415634 0.22418981 -2.3283591 0.13066802 216s 4000 0.40006774 -2.7153553 0.22170678 -2.3172879 -0.17425321 216s 4500 0.45764976 -2.7751555 0.2288386 -2.319794 -0.22228559 216s 5000 0.45119236 -2.7437941 0.21642728 -2.2948577 0.086840364 216s 5500 0.41805158 -2.7191643 0.2405108 -2.303203 -0.20373032 216s 6000 0.41353959 -2.73374 0.26555768 -2.3222681 0.013197521 217s 6500 0.46952638 -2.7206692 0.19356607 -2.2534905 -0.32099423 217s 7000 0.4308564 -2.6963241 0.21298331 -2.2676219 0.11638995 217s 7500 0.44328381 -2.767933 0.28845767 -2.3268656 -0.055714929 217s 8000 0.48149201 -2.7648936 0.25607634 -2.2858091 -0.24833472 217s 8500 0.44641155 -2.735761 0.26866772 -2.2915815 -0.11006786 217s 9000 0.45443104 -2.70388 0.2307522 -2.2517211 -0.077100374 217s 9500 0.42544663 -2.6959692 0.25023057 -2.2726498 -0.04183171 217s 10000 0.42622279 -2.6434464 0.2125908 -2.2193547 0.052056849 217s Loop time of 0.640793 on 2 procs for 10000 steps with 200 atoms 217s 217s Performance: 6741646.926 tau/day, 15605.664 timesteps/s, 3.121 Matom-step/s 217s 98.7% CPU use with 2 MPI tasks x 1 OpenMP threads 217s 217s MPI task timing breakdown: 217s Section | min time | avg time | max time |%varavg| %total 217s --------------------------------------------------------------- 217s Pair | 0.26292 | 0.29468 | 0.32643 | 5.9 | 45.99 217s Neigh | 0.014994 | 0.01629 | 0.017585 | 1.0 | 2.54 217s Comm | 0.24403 | 0.27572 | 0.3074 | 6.0 | 43.03 217s Output | 0.00076132 | 0.0018219 | 0.0028824 | 2.5 | 0.28 217s Modify | 0.02448 | 0.026126 | 0.027771 | 1.0 | 4.08 217s Other | | 0.02616 | | | 4.08 217s 217s Nlocal: 100 ave 104 max 96 min 217s Histogram: 1 0 0 0 0 0 0 0 0 1 217s Nghost: 123.5 ave 124 max 123 min 217s Histogram: 1 0 0 0 0 0 0 0 0 1 217s Neighs: 820 ave 885 max 755 min 217s Histogram: 1 0 0 0 0 0 0 0 0 1 217s 217s Total # of neighbors = 1640 217s Ave neighs/atom = 8.2 217s Neighbor list builds = 697 217s Dangerous builds = 0 217s Total wall time: 0:00:00 217s LAMMPS (7 Feb 2024 - Update 1) 218s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 218s using 1 OpenMP thread(s) per MPI task 218s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 218s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 218s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 218s 1 by 1 by 1 MPI processor grid 218s Created 200 atoms 218s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 218s create_atoms CPU = 0.001 seconds 218s Setting atom values ... 218s 200 settings made for mass 218s Setting atom values ... 218s 200 settings made for dipole/random 218s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 218s Neighbor list info ... 218s update: every = 1 steps, delay = 0 steps, check = yes 218s max neighbors/atom: 2000, page size: 100000 218s master list distance cutoff = 2.8 218s ghost atom cutoff = 2.8 218s binsize = 1.4, bins = 13 13 2 218s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 218s (1) pair lj/cut/dipole/cut, perpetual 218s attributes: half, newton on 218s pair build: half/bin/atomonly/newton 218s stencil: half/bin/2d 218s bin: standard 218s Setting up Verlet run ... 218s Unit style : lj 218s Current step : 0 218s Time step : 0.005 218s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 218s Step Temp E_pair c_erot TotEng Press 218s 0 0 -2.0965715 0 -2.0965715 -2.4759659 218s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 218s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 218s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 218s 2000 0.44906137 -2.8037446 0.24422529 -2.3569285 0.15012276 218s 2500 0.46036094 -2.8144628 0.25011505 -2.3564037 -0.37955581 218s 3000 0.44916796 -2.7986738 0.24197589 -2.3517517 -0.23759595 218s 3500 0.43708892 -2.7404913 0.20046667 -2.3055878 -0.068108938 218s 4000 0.4277424 -2.7516171 0.22285533 -2.3260134 -0.38856067 218s 4500 0.41051154 -2.7253155 0.22244047 -2.3168566 -0.56435269 218s 5000 0.3930005 -2.7393881 0.26645487 -2.3483526 -0.14501759 218s 5500 0.48374634 -2.7361451 0.17785357 -2.2548175 -0.23588662 218s 6000 0.44341889 -2.7200909 0.2049925 -2.2788891 0.30169398 218s 6500 0.45604374 -2.7449044 0.23816385 -2.2911408 -0.02615159 218s 7000 0.41178901 -2.7023053 0.24691126 -2.2925752 -0.089298567 218s 7500 0.49214202 -2.7631906 0.22991178 -2.2735093 -0.21670068 218s 8000 0.51272822 -2.7861027 0.23867667 -2.2759381 -0.054576195 218s 8500 0.3942697 -2.6555823 0.23621182 -2.263284 -0.15323416 218s 9000 0.44393797 -2.7051517 0.23305036 -2.2634334 -0.32144821 218s 9500 0.49155958 -2.757627 0.23397146 -2.2685252 0.083278026 218s 10000 0.49343489 -2.7193593 0.19771681 -2.2283916 -0.10873755 218s Loop time of 0.696907 on 1 procs for 10000 steps with 200 atoms 218s 218s Performance: 6198820.584 tau/day, 14349.122 timesteps/s, 2.870 Matom-step/s 218s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 218s 218s MPI task timing breakdown: 218s Section | min time | avg time | max time |%varavg| %total 218s --------------------------------------------------------------- 218s Pair | 0.56947 | 0.56947 | 0.56947 | 0.0 | 81.71 218s Neigh | 0.030345 | 0.030345 | 0.030345 | 0.0 | 4.35 218s Comm | 0.034929 | 0.034929 | 0.034929 | 0.0 | 5.01 218s Output | 0.00036557 | 0.00036557 | 0.00036557 | 0.0 | 0.05 218s Modify | 0.048692 | 0.048692 | 0.048692 | 0.0 | 6.99 218s Other | | 0.01311 | | | 1.88 218s 218s Nlocal: 200 ave 200 max 200 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s Nghost: 155 ave 155 max 155 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s Neighs: 1664 ave 1664 max 1664 min 218s Histogram: 1 0 0 0 0 0 0 0 0 0 218s 218s Total # of neighbors = 1664 218s Ave neighs/atom = 8.32 218s Neighbor list builds = 697 218s Dangerous builds = 0 218s Total wall time: 0:00:00 218s run: OK 218s autopkgtest [08:41:01]: test dipole: -----------------------] 218s autopkgtest [08:41:01]: test dipole: - - - - - - - - - - results - - - - - - - - - - 218s dipole PASS 219s autopkgtest [08:41:02]: test ellipse: preparing testbed 219s Reading package lists... 219s Building dependency tree... 219s Reading state information... 220s Starting pkgProblemResolver with broken count: 0 220s Starting 2 pkgProblemResolver with broken count: 0 220s Done 221s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 222s autopkgtest [08:41:05]: test ellipse: [----------------------- 222s LAMMPS (7 Feb 2024 - Update 1) 222s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 222s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 222s using 1 OpenMP thread(s) per MPI task 222s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 222s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 222s 2 by 1 by 1 MPI processor grid 222s Created 400 atoms 222s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 222s create_atoms CPU = 0.002 seconds 222s Setting atom values ... 222s 29 settings made for type/fraction 222s Setting atom values ... 222s 371 settings made for mass 222s Setting atom values ... 222s 29 settings made for mass 222s Setting atom values ... 222s 371 settings made for shape 222s Setting atom values ... 222s 29 settings made for shape 222s Setting atom values ... 222s 400 settings made for quat/random 222s 371 atoms in group spheroid 222s 222s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 222s 222s Your simulation uses code contributions which should be cited: 222s - pair gayberne command: doi:10.1063/1.3058435 222s The log file lists these citations in BibTeX format. 222s 222s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 222s 222s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 222s Neighbor list info ... 222s update: every = 1 steps, delay = 0 steps, check = yes 222s max neighbors/atom: 2000, page size: 100000 222s master list distance cutoff = 4.8 222s ghost atom cutoff = 4.8 222s binsize = 2.4, bins = 59 59 3 222s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 222s (1) pair gayberne, perpetual 222s attributes: half, newton on 222s pair build: half/bin/atomonly/newton 222s stencil: half/bin/2d 222s bin: standard 222s Setting up Verlet run ... 222s Unit style : lj 222s Current step : 0 222s Time step : 0.002 222s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 222s Step c_rot E_pair TotEng Press Volume 222s 0 2.3158404 0 2.394 0.04788 20000 222s 100 1.7101139 0 1.7678302 0.034413192 20548.286 222s 200 2.3115592 0 2.3895743 0.04649702 20556.796 222s 300 1.831333 0 1.8931405 0.041256922 18354.646 222s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 222s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 222s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 222s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 222s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 222s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 222s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 222s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 222s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 222s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 222s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 223s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 223s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 223s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 223s 1800 2.0033499 -3.7524192 -1.7481879 0.76104974 973.71402 223s 1900 2.0083456 -3.7603247 -1.7442111 0.74095065 988.03964 223s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 223s Loop time of 0.452067 on 2 procs for 2000 steps with 400 atoms 223s 223s Performance: 764488.571 tau/day, 4424.124 timesteps/s, 1.770 Matom-step/s 223s 95.1% CPU use with 2 MPI tasks x 1 OpenMP threads 223s 223s MPI task timing breakdown: 223s Section | min time | avg time | max time |%varavg| %total 223s --------------------------------------------------------------- 223s Pair | 0.177 | 0.19665 | 0.21629 | 4.4 | 43.50 223s Neigh | 0.011032 | 0.011367 | 0.011702 | 0.3 | 2.51 223s Comm | 0.09393 | 0.1125 | 0.13108 | 5.5 | 24.89 223s Output | 0.025293 | 0.025691 | 0.026088 | 0.2 | 5.68 223s Modify | 0.0899 | 0.091554 | 0.093209 | 0.5 | 20.25 223s Other | | 0.0143 | | | 3.16 223s 223s Nlocal: 200 ave 211 max 189 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s Nghost: 215 ave 217 max 213 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s Neighs: 1561 ave 1651 max 1471 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s 223s Total # of neighbors = 3122 223s Ave neighs/atom = 7.805 223s Neighbor list builds = 346 223s Dangerous builds = 0 223s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 223s Setting up Verlet run ... 223s Unit style : lj 223s Current step : 2000 223s Time step : 0.002 223s Per MPI rank memory allocation (min/avg/max) = 6.899 | 6.899 | 6.899 Mbytes 223s Step c_rot E_pair TotEng Press Volume 223s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 223s 2100 1.9040485 -3.6005672 -1.6802923 0.39862439 989.96894 223s 2200 1.8951971 -3.5921565 -1.6947174 1.0260215 989.96894 223s 2300 2.0029242 -3.7081932 -1.6838651 0.66970247 989.96894 223s 2400 2.0271892 -3.7314226 -1.7100026 0.89700311 989.96894 223s 2500 2.0661249 -3.7753498 -1.7024133 0.57670823 989.96894 223s 2600 2.0610735 -3.7707906 -1.7111976 0.90913324 989.96894 223s 2700 2.0505182 -3.759913 -1.7337449 0.65661806 989.96894 223s 2800 2.1106611 -3.8219493 -1.7370736 0.55275858 989.96894 223s 2900 2.0346954 -3.7427335 -1.7135138 0.69791414 989.96894 223s 3000 2.0331857 -3.7398391 -1.751581 0.051416398 989.96894 223s 3100 1.9983775 -3.7074162 -1.7156494 0.75643227 989.96894 223s 3200 2.1297315 -3.8450391 -1.7173438 1.0595574 989.96894 223s 3300 2.0798058 -3.793496 -1.6857257 1.1572151 989.96894 223s 3400 2.1441179 -3.8596018 -1.7011723 0.61261295 989.96894 223s 3500 2.1035108 -3.8190033 -1.6997662 0.99653756 989.96894 223s 3600 2.0856923 -3.7988484 -1.7184312 1.1264485 989.96894 223s 3700 2.1029212 -3.8148833 -1.7096948 0.96828131 989.96894 223s 3800 2.0253659 -3.7349822 -1.7382292 0.56254829 989.96894 223s 3900 1.9686055 -3.6775217 -1.7283017 1.2472863 989.96894 223s 4000 2.0951026 -3.8095594 -1.6876041 0.79798093 989.96894 223s Loop time of 0.398423 on 2 procs for 2000 steps with 400 atoms 223s 223s Performance: 867420.873 tau/day, 5019.797 timesteps/s, 2.008 Matom-step/s 223s 97.4% CPU use with 2 MPI tasks x 1 OpenMP threads 223s 223s MPI task timing breakdown: 223s Section | min time | avg time | max time |%varavg| %total 223s --------------------------------------------------------------- 223s Pair | 0.24711 | 0.24832 | 0.24954 | 0.2 | 62.33 223s Neigh | 0.0026565 | 0.00311 | 0.0035635 | 0.8 | 0.78 223s Comm | 0.068345 | 0.070265 | 0.072186 | 0.7 | 17.64 223s Output | 0.021977 | 0.022257 | 0.022538 | 0.2 | 5.59 223s Modify | 0.037326 | 0.042518 | 0.047711 | 2.5 | 10.67 223s Other | | 0.01195 | | | 3.00 223s 223s Nlocal: 200 ave 227 max 173 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s Nghost: 211 ave 219 max 203 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s Neighs: 1650.5 ave 1950 max 1351 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s 223s Total # of neighbors = 3301 223s Ave neighs/atom = 8.2525 223s Neighbor list builds = 49 223s Dangerous builds = 0 223s Total wall time: 0:00:00 223s LAMMPS (7 Feb 2024 - Update 1) 224s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 224s using 1 OpenMP thread(s) per MPI task 224s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 224s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 224s 1 by 1 by 1 MPI processor grid 224s Created 400 atoms 224s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 224s create_atoms CPU = 0.000 seconds 224s Setting atom values ... 224s 29 settings made for type/fraction 224s Setting atom values ... 224s 371 settings made for mass 224s Setting atom values ... 224s 29 settings made for mass 224s Setting atom values ... 224s 371 settings made for shape 224s Setting atom values ... 224s 29 settings made for shape 224s Setting atom values ... 224s 400 settings made for quat/random 224s 371 atoms in group spheroid 224s 224s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 224s 224s Your simulation uses code contributions which should be cited: 224s - pair gayberne command: doi:10.1063/1.3058435 224s The log file lists these citations in BibTeX format. 224s 224s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 224s 224s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 224s Neighbor list info ... 224s update: every = 1 steps, delay = 0 steps, check = yes 224s max neighbors/atom: 2000, page size: 100000 224s master list distance cutoff = 4.8 224s ghost atom cutoff = 4.8 224s binsize = 2.4, bins = 59 59 3 224s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 224s (1) pair gayberne, perpetual 224s attributes: half, newton on 224s pair build: half/bin/atomonly/newton 224s stencil: half/bin/2d 224s bin: standard 224s Setting up Verlet run ... 224s Unit style : lj 224s Current step : 0 224s Time step : 0.002 224s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 224s Step c_rot E_pair TotEng Press Volume 224s 0 2.3158404 0 2.394 0.04788 20000 224s 100 1.7101139 0 1.7678302 0.034413192 20548.286 224s 200 2.3115592 0 2.3895743 0.04649702 20556.796 224s 300 1.831333 0 1.8931405 0.041256922 18354.646 224s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 224s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 224s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 224s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 224s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 224s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 224s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 224s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 224s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 224s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 224s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 224s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 224s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 224s 1700 1.9971755 -3.8166601 -1.8380659 0.41343092 945.60821 224s 1800 2.0033499 -3.7524192 -1.7481879 0.76104975 973.71402 224s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 224s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 224s Loop time of 0.570592 on 1 procs for 2000 steps with 400 atoms 224s 224s Performance: 605686.687 tau/day, 3505.131 timesteps/s, 1.402 Matom-step/s 224s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 224s 224s MPI task timing breakdown: 224s Section | min time | avg time | max time |%varavg| %total 224s --------------------------------------------------------------- 224s Pair | 0.37978 | 0.37978 | 0.37978 | 0.0 | 66.56 224s Neigh | 0.020158 | 0.020158 | 0.020158 | 0.0 | 3.53 224s Comm | 0.010698 | 0.010698 | 0.010698 | 0.0 | 1.87 224s Output | 0.019718 | 0.019718 | 0.019718 | 0.0 | 3.46 224s Modify | 0.13456 | 0.13456 | 0.13456 | 0.0 | 23.58 224s Other | | 0.005683 | | | 1.00 224s 224s Nlocal: 400 ave 400 max 400 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s Nghost: 276 ave 276 max 276 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s Neighs: 3122 ave 3122 max 3122 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s 224s Total # of neighbors = 3122 224s Ave neighs/atom = 7.805 224s Neighbor list builds = 346 224s Dangerous builds = 0 224s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 224s Setting up Verlet run ... 224s Unit style : lj 224s Current step : 2000 224s Time step : 0.002 224s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 224s Step c_rot E_pair TotEng Press Volume 224s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 224s 2100 1.9040485 -3.6005672 -1.6802923 0.39862438 989.96894 224s 2200 1.8951971 -3.5921566 -1.6947174 1.0260215 989.96894 224s 2300 2.0029244 -3.7081934 -1.6838652 0.66970135 989.96894 224s 2400 2.0271885 -3.731422 -1.7100022 0.89700608 989.96894 224s 2500 2.066122 -3.7753468 -1.7024127 0.57671483 989.96894 224s 2600 2.0610701 -3.7707871 -1.7111979 0.90915268 989.96894 224s 2700 2.0505226 -3.7599192 -1.7337496 0.65661546 989.96894 224s 2800 2.1106391 -3.8219307 -1.7370733 0.55280503 989.96894 224s 2900 2.0347598 -3.7428025 -1.7135189 0.69781833 989.96894 224s 3000 2.0330208 -3.7396616 -1.7515118 0.052338568 989.96894 224s 3100 1.9979524 -3.7070895 -1.715955 0.75689837 989.96894 224s 3200 2.1279004 -3.8431144 -1.7172074 1.0681978 989.96894 224s 3300 2.0795122 -3.7933999 -1.6843677 1.160141 989.96894 224s 3400 2.1458506 -3.8618217 -1.7011471 0.60302387 989.96894 224s 3500 2.0922186 -3.8066733 -1.7042032 1.020929 989.96894 224s 3600 2.0923687 -3.8049721 -1.7151823 0.97720853 989.96894 224s 3700 2.1082732 -3.8201734 -1.6945215 0.97495003 989.96894 224s 3800 2.0883146 -3.8011237 -1.6897726 0.59373082 989.96894 224s 3900 2.1821449 -3.8971145 -1.6976484 0.53241288 989.96894 224s 4000 2.103916 -3.8154046 -1.6865256 0.96939819 989.96894 224s Loop time of 0.617427 on 1 procs for 2000 steps with 400 atoms 224s 224s Performance: 559741.989 tau/day, 3239.248 timesteps/s, 1.296 Matom-step/s 224s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 224s 224s MPI task timing breakdown: 224s Section | min time | avg time | max time |%varavg| %total 224s --------------------------------------------------------------- 224s Pair | 0.49257 | 0.49257 | 0.49257 | 0.0 | 79.78 224s Neigh | 0.0060095 | 0.0060095 | 0.0060095 | 0.0 | 0.97 224s Comm | 0.011998 | 0.011998 | 0.011998 | 0.0 | 1.94 224s Output | 0.019484 | 0.019484 | 0.019484 | 0.0 | 3.16 224s Modify | 0.082909 | 0.082909 | 0.082909 | 0.0 | 13.43 224s Other | | 0.004457 | | | 0.72 224s 224s Nlocal: 400 ave 400 max 400 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s Nghost: 284 ave 284 max 284 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s Neighs: 3287 ave 3287 max 3287 min 224s Histogram: 1 0 0 0 0 0 0 0 0 0 224s 224s Total # of neighbors = 3287 224s Ave neighs/atom = 8.2175 224s Neighbor list builds = 51 224s Dangerous builds = 0 224s Total wall time: 0:00:01 225s LAMMPS (7 Feb 2024 - Update 1) 225s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 225s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 225s using 1 OpenMP thread(s) per MPI task 225s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 225s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 225s 2 by 1 by 1 MPI processor grid 225s Created 400 atoms 225s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 225s create_atoms CPU = 0.001 seconds 225s Setting atom values ... 225s 29 settings made for type/fraction 225s Setting atom values ... 225s 371 settings made for mass 225s Setting atom values ... 225s 29 settings made for mass 225s Setting atom values ... 225s 371 settings made for shape 225s Setting atom values ... 225s 29 settings made for shape 225s Setting atom values ... 225s 400 settings made for quat/random 225s 371 atoms in group spheroid 225s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 225s Neighbor list info ... 225s update: every = 1 steps, delay = 0 steps, check = yes 225s max neighbors/atom: 2000, page size: 100000 225s master list distance cutoff = 4.8 225s ghost atom cutoff = 4.8 225s binsize = 2.4, bins = 59 59 3 225s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 225s (1) pair resquared, perpetual 225s attributes: half, newton on 225s pair build: half/bin/atomonly/newton 225s stencil: half/bin/2d 225s bin: standard 225s Setting up Verlet run ... 225s Unit style : lj 225s Current step : 0 225s Time step : 0.002 225s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 225s Step c_rot E_pair TotEng Press Volume 225s 0 2.3158404 0 2.394 0.04788 20000 225s 100 1.7101139 0 1.7678302 0.034413192 20548.286 225s 200 2.3115592 0 2.3895743 0.04649702 20556.796 225s 300 1.831333 0 1.8931405 0.041256922 18354.646 225s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 225s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 225s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 225s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 225s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 225s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 225s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 225s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 225s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 225s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 225s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 225s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 225s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 225s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 225s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 225s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 225s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 225s Loop time of 0.542056 on 2 procs for 2000 steps with 400 atoms 225s 225s Performance: 637571.948 tau/day, 3689.652 timesteps/s, 1.476 Matom-step/s 225s 98.4% CPU use with 2 MPI tasks x 1 OpenMP threads 225s 225s MPI task timing breakdown: 225s Section | min time | avg time | max time |%varavg| %total 225s --------------------------------------------------------------- 225s Pair | 0.38335 | 0.39057 | 0.39779 | 1.2 | 72.05 225s Neigh | 0.0105 | 0.01075 | 0.011 | 0.2 | 1.98 225s Comm | 0.032504 | 0.039635 | 0.046765 | 3.6 | 7.31 225s Output | 0.01575 | 0.015911 | 0.016072 | 0.1 | 2.94 225s Modify | 0.077036 | 0.077623 | 0.07821 | 0.2 | 14.32 225s Other | | 0.007572 | | | 1.40 225s 225s Nlocal: 200 ave 210 max 190 min 225s Histogram: 1 0 0 0 0 0 0 0 0 1 225s Nghost: 164 ave 168 max 160 min 225s Histogram: 1 0 0 0 0 0 0 0 0 1 225s Neighs: 910 ave 958 max 862 min 225s Histogram: 1 0 0 0 0 0 0 0 0 1 225s 225s Total # of neighbors = 1820 225s Ave neighs/atom = 4.55 225s Neighbor list builds = 420 225s Dangerous builds = 0 225s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 225s Setting up Verlet run ... 225s Unit style : lj 225s Current step : 2000 225s Time step : 0.002 225s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 225s Step c_rot E_pair TotEng Press Volume 225s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 225s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 225s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 225s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 225s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 225s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 225s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 225s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 225s 2800 1.9890373 0.15589592 2.1204126 1.2343376 1639.6982 225s 2900 1.9922852 0.15256975 2.0956529 1.2419165 1639.6982 225s 3000 1.9618081 0.18405955 2.1392907 1.3468024 1639.6982 226s 3100 1.920815 0.22640753 2.1223513 1.6487874 1639.6982 226s 3200 1.9201455 0.22718151 2.1360379 1.537008 1639.6982 226s 3300 2.0073207 0.13690691 2.1185858 1.1973827 1639.6982 226s 3400 2.0179674 0.12601938 2.1227815 1.0847666 1639.6982 226s 3500 1.9561038 0.18991636 2.11504 1.3377604 1639.6982 226s 3600 1.9971208 0.14756321 2.1401442 1.2026471 1639.6982 226s 3700 1.9731986 0.17227975 2.1472974 1.2730305 1639.6982 226s 3800 2.0000945 0.1444447 2.0994588 1.1502433 1639.6982 226s 3900 1.9911415 0.15372488 2.1423535 1.227966 1639.6982 226s 4000 1.9822293 0.16299254 2.0899439 1.2166942 1639.6982 226s Loop time of 0.832178 on 2 procs for 2000 steps with 400 atoms 226s 226s Performance: 415295.831 tau/day, 2403.332 timesteps/s, 961.333 katom-step/s 226s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 226s 226s MPI task timing breakdown: 226s Section | min time | avg time | max time |%varavg| %total 226s --------------------------------------------------------------- 226s Pair | 0.66975 | 0.70486 | 0.73996 | 4.2 | 84.70 226s Neigh | 0.0020734 | 0.0022121 | 0.0023508 | 0.3 | 0.27 226s Comm | 0.024917 | 0.06026 | 0.095602 | 14.4 | 7.24 226s Output | 0.01625 | 0.016378 | 0.016506 | 0.1 | 1.97 226s Modify | 0.038921 | 0.041274 | 0.043627 | 1.2 | 4.96 226s Other | | 0.007198 | | | 0.86 226s 226s Nlocal: 200 ave 212 max 188 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Nghost: 171.5 ave 173 max 170 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Neighs: 880.5 ave 946 max 815 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s 226s Total # of neighbors = 1761 226s Ave neighs/atom = 4.4025 226s Neighbor list builds = 49 226s Dangerous builds = 0 226s Total wall time: 0:00:01 226s LAMMPS (7 Feb 2024 - Update 1) 227s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 227s using 1 OpenMP thread(s) per MPI task 227s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 227s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 227s 1 by 1 by 1 MPI processor grid 227s Created 400 atoms 227s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 227s create_atoms CPU = 0.000 seconds 227s Setting atom values ... 227s 29 settings made for type/fraction 227s Setting atom values ... 227s 371 settings made for mass 227s Setting atom values ... 227s 29 settings made for mass 227s Setting atom values ... 227s 371 settings made for shape 227s Setting atom values ... 227s 29 settings made for shape 227s Setting atom values ... 227s 400 settings made for quat/random 227s 371 atoms in group spheroid 227s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 227s Neighbor list info ... 227s update: every = 1 steps, delay = 0 steps, check = yes 227s max neighbors/atom: 2000, page size: 100000 227s master list distance cutoff = 4.8 227s ghost atom cutoff = 4.8 227s binsize = 2.4, bins = 59 59 3 227s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 227s (1) pair resquared, perpetual 227s attributes: half, newton on 227s pair build: half/bin/atomonly/newton 227s stencil: half/bin/2d 227s bin: standard 227s Setting up Verlet run ... 227s Unit style : lj 227s Current step : 0 227s Time step : 0.002 227s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 227s Step c_rot E_pair TotEng Press Volume 227s 0 2.3158404 0 2.394 0.04788 20000 227s 100 1.7101139 0 1.7678302 0.034413192 20548.286 227s 200 2.3115592 0 2.3895743 0.04649702 20556.796 227s 300 1.831333 0 1.8931405 0.041256922 18354.646 227s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 227s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 227s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 227s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 227s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 227s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 227s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 227s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 227s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 227s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 227s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 227s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 227s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 227s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 227s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 227s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 227s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 227s Loop time of 0.961894 on 1 procs for 2000 steps with 400 atoms 227s 227s Performance: 359291.267 tau/day, 2079.232 timesteps/s, 831.693 katom-step/s 227s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 227s 227s MPI task timing breakdown: 227s Section | min time | avg time | max time |%varavg| %total 227s --------------------------------------------------------------- 227s Pair | 0.7736 | 0.7736 | 0.7736 | 0.0 | 80.42 227s Neigh | 0.020982 | 0.020982 | 0.020982 | 0.0 | 2.18 227s Comm | 0.0078943 | 0.0078943 | 0.0078943 | 0.0 | 0.82 227s Output | 0.019285 | 0.019285 | 0.019285 | 0.0 | 2.00 227s Modify | 0.1346 | 0.1346 | 0.1346 | 0.0 | 13.99 229s Other | | 0.005538 | | | 0.58 229s 229s Nlocal: 400 ave 400 max 400 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s Nghost: 206 ave 206 max 206 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s Neighs: 1820 ave 1820 max 1820 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s 229s Total # of neighbors = 1820 229s Ave neighs/atom = 4.55 229s Neighbor list builds = 420 229s Dangerous builds = 0 229s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 229s Setting up Verlet run ... 229s Unit style : lj 229s Current step : 2000 229s Time step : 0.002 229s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 229s Step c_rot E_pair TotEng Press Volume 229s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 229s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 229s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 229s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 229s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 229s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 229s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 229s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 229s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 229s 2900 1.9922852 0.15256971 2.0956529 1.2419163 1639.6982 229s 3000 1.9618081 0.18405956 2.1392907 1.3468024 1639.6982 229s 3100 1.9208147 0.22640783 2.1223514 1.6487893 1639.6982 229s 3200 1.9201454 0.2271816 2.136038 1.5370083 1639.6982 229s 3300 2.0073199 0.13690769 2.1185864 1.1973892 1639.6982 229s 3400 2.0179674 0.12601938 2.1227814 1.0847667 1639.6982 229s 3500 1.9561059 0.1899142 2.1150384 1.3377509 1639.6982 229s 3600 1.9971218 0.14756225 2.1401434 1.2026401 1639.6982 229s 3700 1.9731874 0.17229133 2.1473283 1.2730808 1639.6982 229s 3800 2.0000992 0.14443988 2.0994807 1.1502356 1639.6982 229s 3900 1.9911429 0.15372349 2.1424035 1.227982 1639.6982 229s 4000 1.9823333 0.16288519 2.0899581 1.2162824 1639.6982 229s Loop time of 1.52727 on 1 procs for 2000 steps with 400 atoms 229s 229s Performance: 226286.390 tau/day, 1309.528 timesteps/s, 523.811 katom-step/s 229s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 229s 229s MPI task timing breakdown: 229s Section | min time | avg time | max time |%varavg| %total 229s --------------------------------------------------------------- 229s Pair | 1.4065 | 1.4065 | 1.4065 | 0.0 | 92.10 229s Neigh | 0.0042925 | 0.0042925 | 0.0042925 | 0.0 | 0.28 229s Comm | 0.0091186 | 0.0091186 | 0.0091186 | 0.0 | 0.60 229s Output | 0.019743 | 0.019743 | 0.019743 | 0.0 | 1.29 229s Modify | 0.083 | 0.083 | 0.083 | 0.0 | 5.43 229s Other | | 0.004571 | | | 0.30 229s 229s Nlocal: 400 ave 400 max 400 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s Nghost: 215 ave 215 max 215 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s Neighs: 1761 ave 1761 max 1761 min 229s Histogram: 1 0 0 0 0 0 0 0 0 0 229s 229s Total # of neighbors = 1761 229s Ave neighs/atom = 4.4025 229s Neighbor list builds = 49 229s Dangerous builds = 0 229s Total wall time: 0:00:02 229s run: OK 229s autopkgtest [08:41:12]: test ellipse: -----------------------] 229s autopkgtest [08:41:12]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 229s ellipse PASS 230s autopkgtest [08:41:13]: test flow: preparing testbed 230s Reading package lists... 230s Building dependency tree... 230s Reading state information... 231s Starting pkgProblemResolver with broken count: 0 231s Starting 2 pkgProblemResolver with broken count: 0 231s Done 232s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 232s autopkgtest [08:41:15]: test flow: [----------------------- 233s LAMMPS (7 Feb 2024 - Update 1) 233s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 233s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 233s using 1 OpenMP thread(s) per MPI task 233s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 233s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 233s 2 by 1 by 1 MPI processor grid 233s Created 420 atoms 233s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 233s create_atoms CPU = 0.000 seconds 233s 60 atoms in group lower 233s 60 atoms in group upper 233s 120 atoms in group boundary 233s 300 atoms in group flow 233s Setting atom values ... 233s 60 settings made for type 233s Setting atom values ... 233s 60 settings made for type 233s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 233s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 233s Neighbor list info ... 233s update: every = 1 steps, delay = 5 steps, check = yes 233s max neighbors/atom: 2000, page size: 100000 233s master list distance cutoff = 1.42246 233s ghost atom cutoff = 1.42246 233s binsize = 0.71123, bins = 37 32 1 233s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 233s (1) pair lj/cut, perpetual 233s attributes: half, newton on 233s pair build: half/bin/atomonly/newton 233s stencil: half/bin/2d 233s bin: standard 233s Setting up Verlet run ... 233s Unit style : lj 233s Current step : 0 233s Time step : 0.003 233s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 233s Step Temp E_pair E_mol TotEng Press Volume 233s 0 1 0 0 0.71190476 0.52314537 571.54286 233s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 233s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 233s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 233s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 233s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 233s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 233s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 233s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 233s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 233s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 233s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 233s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 233s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 233s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 233s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 233s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 233s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 233s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 233s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 233s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 233s Loop time of 0.161176 on 2 procs for 10000 steps with 420 atoms 233s 233s Performance: 16081785.558 tau/day, 62043.926 timesteps/s, 26.058 Matom-step/s 233s 97.5% CPU use with 2 MPI tasks x 1 OpenMP threads 233s 233s MPI task timing breakdown: 233s Section | min time | avg time | max time |%varavg| %total 233s --------------------------------------------------------------- 233s Pair | 0.035421 | 0.035557 | 0.035693 | 0.1 | 22.06 233s Neigh | 0.020197 | 0.020225 | 0.020252 | 0.0 | 12.55 233s Comm | 0.060795 | 0.060907 | 0.061019 | 0.0 | 37.79 233s Output | 0.00035315 | 0.0013527 | 0.0023523 | 2.7 | 0.84 233s Modify | 0.025976 | 0.026119 | 0.026261 | 0.1 | 16.21 233s Other | | 0.01702 | | | 10.56 233s 233s Nlocal: 210 ave 214 max 206 min 233s Histogram: 1 0 0 0 0 0 0 0 0 1 233s Nghost: 51 ave 52 max 50 min 233s Histogram: 1 0 0 0 0 0 0 0 0 1 233s Neighs: 472 ave 494 max 450 min 233s Histogram: 1 0 0 0 0 0 0 0 0 1 233s 233s Total # of neighbors = 944 233s Ave neighs/atom = 2.247619 233s Neighbor list builds = 994 233s Dangerous builds = 0 233s Total wall time: 0:00:00 233s LAMMPS (7 Feb 2024 - Update 1) 233s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 233s using 1 OpenMP thread(s) per MPI task 233s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 233s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 233s 1 by 1 by 1 MPI processor grid 233s Created 420 atoms 233s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 233s create_atoms CPU = 0.000 seconds 233s 60 atoms in group lower 233s 60 atoms in group upper 233s 120 atoms in group boundary 233s 300 atoms in group flow 233s Setting atom values ... 233s 60 settings made for type 233s Setting atom values ... 233s 60 settings made for type 233s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 233s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 233s Neighbor list info ... 233s update: every = 1 steps, delay = 5 steps, check = yes 233s max neighbors/atom: 2000, page size: 100000 233s master list distance cutoff = 1.42246 233s ghost atom cutoff = 1.42246 233s binsize = 0.71123, bins = 37 32 1 233s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 233s (1) pair lj/cut, perpetual 233s attributes: half, newton on 233s pair build: half/bin/atomonly/newton 233s stencil: half/bin/2d 233s bin: standard 233s Setting up Verlet run ... 233s Unit style : lj 233s Current step : 0 233s Time step : 0.003 233s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 233s Step Temp E_pair E_mol TotEng Press Volume 233s 0 1 0 0 0.71190476 0.52314537 571.54286 233s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 233s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 233s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 233s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 233s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 233s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 233s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 233s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 233s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 233s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 233s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 233s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 233s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 233s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 233s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 233s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 233s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 233s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 233s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 233s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 233s Loop time of 0.182451 on 1 procs for 10000 steps with 420 atoms 233s 233s Performance: 14206574.100 tau/day, 54809.314 timesteps/s, 23.020 Matom-step/s 233s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 233s 233s MPI task timing breakdown: 233s Section | min time | avg time | max time |%varavg| %total 233s --------------------------------------------------------------- 233s Pair | 0.072025 | 0.072025 | 0.072025 | 0.0 | 39.48 233s Neigh | 0.038899 | 0.038899 | 0.038899 | 0.0 | 21.32 233s Comm | 0.0061981 | 0.0061981 | 0.0061981 | 0.0 | 3.40 233s Output | 0.00036208 | 0.00036208 | 0.00036208 | 0.0 | 0.20 233s Modify | 0.048541 | 0.048541 | 0.048541 | 0.0 | 26.60 233s Other | | 0.01643 | | | 9.00 233s 233s Nlocal: 420 ave 420 max 420 min 233s Histogram: 1 0 0 0 0 0 0 0 0 0 233s Nghost: 50 ave 50 max 50 min 233s Histogram: 1 0 0 0 0 0 0 0 0 0 233s Neighs: 946 ave 946 max 946 min 233s Histogram: 1 0 0 0 0 0 0 0 0 0 233s 233s Total # of neighbors = 946 233s Ave neighs/atom = 2.252381 233s Neighbor list builds = 979 233s Dangerous builds = 0 233s Total wall time: 0:00:00 233s LAMMPS (7 Feb 2024 - Update 1) 233s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 233s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 233s using 1 OpenMP thread(s) per MPI task 233s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 233s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 233s 2 by 1 by 1 MPI processor grid 233s Created 420 atoms 233s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 233s create_atoms CPU = 0.000 seconds 233s 60 atoms in group lower 233s 60 atoms in group upper 233s 120 atoms in group boundary 233s 300 atoms in group flow 233s Setting atom values ... 233s 60 settings made for type 233s Setting atom values ... 233s 60 settings made for type 233s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 233s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 233s Neighbor list info ... 233s update: every = 1 steps, delay = 5 steps, check = yes 233s max neighbors/atom: 2000, page size: 100000 233s master list distance cutoff = 1.42246 233s ghost atom cutoff = 1.42246 233s binsize = 0.71123, bins = 37 32 1 233s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 233s (1) pair lj/cut, perpetual 233s attributes: half, newton on 233s pair build: half/bin/atomonly/newton 233s stencil: half/bin/2d 233s bin: standard 233s Setting up Verlet run ... 233s Unit style : lj 233s Current step : 0 233s Time step : 0.003 233s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 233s Step Temp E_pair E_mol TotEng Press Volume 233s 0 1 0 0 0.71190476 0.52314537 571.54286 233s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 233s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 233s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 233s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 233s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 233s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 233s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 233s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 233s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 233s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 233s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 233s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 233s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 233s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 233s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 233s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 234s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 234s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 234s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 234s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 234s Loop time of 0.183589 on 2 procs for 10000 steps with 420 atoms 234s 234s Performance: 14118481.095 tau/day, 54469.449 timesteps/s, 22.877 Matom-step/s 234s 96.3% CPU use with 2 MPI tasks x 1 OpenMP threads 234s 234s MPI task timing breakdown: 234s Section | min time | avg time | max time |%varavg| %total 234s --------------------------------------------------------------- 234s Pair | 0.039092 | 0.039223 | 0.039354 | 0.1 | 21.36 234s Neigh | 0.011915 | 0.011918 | 0.011921 | 0.0 | 6.49 234s Comm | 0.059061 | 0.059852 | 0.060644 | 0.3 | 32.60 234s Output | 0.00034684 | 0.00080448 | 0.0012621 | 0.0 | 0.44 234s Modify | 0.054567 | 0.055283 | 0.055999 | 0.3 | 30.11 234s Other | | 0.01651 | | | 8.99 234s 234s Nlocal: 210 ave 211 max 209 min 234s Histogram: 1 0 0 0 0 0 0 0 0 1 234s Nghost: 50 ave 51 max 49 min 234s Histogram: 1 0 0 0 0 0 0 0 0 1 234s Neighs: 563.5 ave 569 max 558 min 234s Histogram: 1 0 0 0 0 0 0 0 0 1 234s 234s Total # of neighbors = 1127 234s Ave neighs/atom = 2.6833333 234s Neighbor list builds = 560 234s Dangerous builds = 0 234s Total wall time: 0:00:00 234s LAMMPS (7 Feb 2024 - Update 1) 234s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 234s using 1 OpenMP thread(s) per MPI task 234s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 234s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 234s 1 by 1 by 1 MPI processor grid 234s Created 420 atoms 234s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 234s create_atoms CPU = 0.000 seconds 234s 60 atoms in group lower 234s 60 atoms in group upper 234s 120 atoms in group boundary 234s 300 atoms in group flow 234s Setting atom values ... 234s 60 settings made for type 234s Setting atom values ... 234s 60 settings made for type 234s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 234s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 234s Neighbor list info ... 234s update: every = 1 steps, delay = 5 steps, check = yes 234s max neighbors/atom: 2000, page size: 100000 234s master list distance cutoff = 1.42246 234s ghost atom cutoff = 1.42246 234s binsize = 0.71123, bins = 37 32 1 234s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 234s (1) pair lj/cut, perpetual 234s attributes: half, newton on 234s pair build: half/bin/atomonly/newton 234s stencil: half/bin/2d 234s bin: standard 234s Setting up Verlet run ... 234s Unit style : lj 234s Current step : 0 234s Time step : 0.003 234s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 234s Step Temp E_pair E_mol TotEng Press Volume 234s 0 1 0 0 0.71190476 0.52314537 571.54286 234s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 234s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 234s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 234s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 234s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 234s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 234s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 234s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 234s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 234s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 234s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 234s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 234s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 234s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 234s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 234s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 234s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 234s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 234s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 234s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 234s Loop time of 0.216921 on 1 procs for 10000 steps with 420 atoms 234s 234s Performance: 11949059.114 tau/day, 46099.765 timesteps/s, 19.362 Matom-step/s 234s 98.7% CPU use with 1 MPI tasks x 1 OpenMP threads 234s 234s MPI task timing breakdown: 234s Section | min time | avg time | max time |%varavg| %total 234s --------------------------------------------------------------- 234s Pair | 0.081087 | 0.081087 | 0.081087 | 0.0 | 37.38 234s Neigh | 0.022992 | 0.022992 | 0.022992 | 0.0 | 10.60 234s Comm | 0.0052593 | 0.0052593 | 0.0052593 | 0.0 | 2.42 234s Output | 0.00033227 | 0.00033227 | 0.00033227 | 0.0 | 0.15 234s Modify | 0.091368 | 0.091368 | 0.091368 | 0.0 | 42.12 234s Other | | 0.01588 | | | 7.32 234s 234s Nlocal: 420 ave 420 max 420 min 234s Histogram: 1 0 0 0 0 0 0 0 0 0 234s Nghost: 51 ave 51 max 51 min 234s Histogram: 1 0 0 0 0 0 0 0 0 0 234s Neighs: 1150 ave 1150 max 1150 min 234s Histogram: 1 0 0 0 0 0 0 0 0 0 234s 234s Total # of neighbors = 1150 234s Ave neighs/atom = 2.7380952 234s Neighbor list builds = 563 234s Dangerous builds = 0 234s Total wall time: 0:00:00 234s run: OK 234s autopkgtest [08:41:17]: test flow: -----------------------] 235s flow PASS 235s autopkgtest [08:41:18]: test flow: - - - - - - - - - - results - - - - - - - - - - 235s autopkgtest [08:41:18]: test friction: preparing testbed 235s Reading package lists... 236s Building dependency tree... 236s Reading state information... 236s Starting pkgProblemResolver with broken count: 0 236s Starting 2 pkgProblemResolver with broken count: 0 236s Done 237s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 238s autopkgtest [08:41:21]: test friction: [----------------------- 238s LAMMPS (7 Feb 2024 - Update 1) 238s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 238s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 238s using 1 OpenMP thread(s) per MPI task 238s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 238s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 238s 2 by 1 by 1 MPI processor grid 238s Created 750 atoms 238s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 238s create_atoms CPU = 0.001 seconds 238s Created 750 atoms 238s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 238s create_atoms CPU = 0.000 seconds 238s Created 112 atoms 238s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 238s create_atoms CPU = 0.000 seconds 238s Created 112 atoms 238s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 238s create_atoms CPU = 0.000 seconds 238s 750 atoms in group lo 238s 862 atoms in group lo 238s 750 atoms in group hi 238s 862 atoms in group hi 238s 150 atoms in group lo-fixed 238s 150 atoms in group hi-fixed 238s 300 atoms in group boundary 238s 1424 atoms in group mobile 238s Setting atom values ... 238s 150 settings made for type 238s Setting atom values ... 238s 150 settings made for type 238s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 238s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 238s Neighbor list info ... 238s update: every = 1 steps, delay = 5 steps, check = yes 238s max neighbors/atom: 2000, page size: 100000 238s master list distance cutoff = 2.8 238s ghost atom cutoff = 2.8 238s binsize = 1.4, bins = 41 31 1 238s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 238s (1) pair lj/cut, perpetual 238s attributes: half, newton on 238s pair build: half/bin/atomonly/newton 238s stencil: half/bin/2d 238s bin: standard 238s Setting up Verlet run ... 238s Unit style : lj 238s Current step : 0 238s Time step : 0.0025 238s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 238s Step Temp E_pair E_mol TotEng Press Volume 238s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 238s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 238s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 239s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 239s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 239s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 239s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 239s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 239s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 239s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 239s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 240s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 240s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 240s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 240s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 240s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 240s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 240s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 240s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 241s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 241s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 241s Loop time of 2.45986 on 2 procs for 20000 steps with 1724 atoms 241s 241s Performance: 1756197.559 tau/day, 8130.544 timesteps/s, 14.017 Matom-step/s 241s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 241s 241s MPI task timing breakdown: 241s Section | min time | avg time | max time |%varavg| %total 241s --------------------------------------------------------------- 241s Pair | 1.5993 | 1.721 | 1.8428 | 9.3 | 69.96 241s Neigh | 0.099213 | 0.1097 | 0.12019 | 3.2 | 4.46 241s Comm | 0.1947 | 0.32925 | 0.4638 | 23.4 | 13.38 241s Output | 0.0004288 | 0.00091974 | 0.0014107 | 0.0 | 0.04 241s Modify | 0.19379 | 0.20627 | 0.21874 | 2.7 | 8.39 241s Other | | 0.09269 | | | 3.77 241s 241s Nlocal: 862 ave 874 max 850 min 241s Histogram: 1 0 0 0 0 0 0 0 0 1 241s Nghost: 165.5 ave 166 max 165 min 241s Histogram: 1 0 0 0 0 0 0 0 0 1 241s Neighs: 7198 ave 7283 max 7113 min 241s Histogram: 1 0 0 0 0 0 0 0 0 1 241s 241s Total # of neighbors = 14396 241s Ave neighs/atom = 8.350348 241s Neighbor list builds = 720 241s Dangerous builds = 0 241s Total wall time: 0:00:02 241s LAMMPS (7 Feb 2024 - Update 1) 245s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 245s using 1 OpenMP thread(s) per MPI task 245s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 245s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 245s 1 by 1 by 1 MPI processor grid 245s Created 750 atoms 245s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 245s create_atoms CPU = 0.001 seconds 245s Created 750 atoms 245s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 245s create_atoms CPU = 0.000 seconds 245s Created 112 atoms 245s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 245s create_atoms CPU = 0.000 seconds 245s Created 112 atoms 245s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 245s create_atoms CPU = 0.000 seconds 245s 750 atoms in group lo 245s 862 atoms in group lo 245s 750 atoms in group hi 245s 862 atoms in group hi 245s 150 atoms in group lo-fixed 245s 150 atoms in group hi-fixed 245s 300 atoms in group boundary 245s 1424 atoms in group mobile 245s Setting atom values ... 245s 150 settings made for type 245s Setting atom values ... 245s 150 settings made for type 245s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 245s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 245s Neighbor list info ... 245s update: every = 1 steps, delay = 5 steps, check = yes 245s max neighbors/atom: 2000, page size: 100000 245s master list distance cutoff = 2.8 245s ghost atom cutoff = 2.8 245s binsize = 1.4, bins = 41 31 1 245s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 245s (1) pair lj/cut, perpetual 245s attributes: half, newton on 245s pair build: half/bin/atomonly/newton 245s stencil: half/bin/2d 245s bin: standard 245s Setting up Verlet run ... 245s Unit style : lj 245s Current step : 0 245s Time step : 0.0025 245s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 245s Step Temp E_pair E_mol TotEng Press Volume 245s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 245s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 245s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 245s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 245s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 245s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 245s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 245s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 245s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 245s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 245s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 245s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 245s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 245s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 245s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 245s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 245s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 245s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 245s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 245s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 245s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 245s Loop time of 4.17656 on 1 procs for 20000 steps with 1724 atoms 245s 245s Performance: 1034343.246 tau/day, 4788.626 timesteps/s, 8.256 Matom-step/s 245s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 245s 245s MPI task timing breakdown: 245s Section | min time | avg time | max time |%varavg| %total 245s --------------------------------------------------------------- 245s Pair | 3.408 | 3.408 | 3.408 | 0.0 | 81.60 245s Neigh | 0.20398 | 0.20398 | 0.20398 | 0.0 | 4.88 245s Comm | 0.031384 | 0.031384 | 0.031384 | 0.0 | 0.75 245s Output | 0.00058293 | 0.00058293 | 0.00058293 | 0.0 | 0.01 245s Modify | 0.42014 | 0.42014 | 0.42014 | 0.0 | 10.06 245s Other | | 0.1125 | | | 2.69 245s 245s Nlocal: 1724 ave 1724 max 1724 min 245s Histogram: 1 0 0 0 0 0 0 0 0 0 245s Nghost: 145 ave 145 max 145 min 245s Histogram: 1 0 0 0 0 0 0 0 0 0 245s Neighs: 14397 ave 14397 max 14397 min 245s Histogram: 1 0 0 0 0 0 0 0 0 0 245s 245s Total # of neighbors = 14397 245s Ave neighs/atom = 8.3509281 245s Neighbor list builds = 723 245s Dangerous builds = 0 245s Total wall time: 0:00:04 245s run: OK 245s autopkgtest [08:41:28]: test friction: -----------------------] 246s friction PASS 246s autopkgtest [08:41:29]: test friction: - - - - - - - - - - results - - - - - - - - - - 246s autopkgtest [08:41:29]: test hugo: preparing testbed 246s Reading package lists... 247s Building dependency tree... 247s Reading state information... 247s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 248s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 249s autopkgtest [08:41:32]: test hugo: [----------------------- 249s LAMMPS (7 Feb 2024 - Update 1) 249s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 249s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 249s using 1 OpenMP thread(s) per MPI task 249s Lattice spacing in x,y,z = 1.4142135 2 2 249s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 249s 1 by 1 by 2 MPI processor grid 249s Created 1000 atoms 249s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 249s create_atoms CPU = 0.000 seconds 249s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 249s Neighbor list info ... 249s update: every = 1 steps, delay = 0 steps, check = yes 249s max neighbors/atom: 2000, page size: 100000 249s master list distance cutoff = 1.8475372 249s ghost atom cutoff = 1.8475372 249s binsize = 0.92376862, bins = 8 11 11 249s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 249s (1) pair lj/cubic, perpetual 249s attributes: half, newton on 249s pair build: half/bin/atomonly/newton 249s stencil: half/bin/3d 249s bin: standard 249s Setting up cg style minimization ... 249s Unit style : lj 249s Current step : 0 249s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 249s (src/min.cpp:219) 249s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 249s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 249s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 249s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 249s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 249s Loop time of 0.0353657 on 2 procs for 134 steps with 1000 atoms 249s 249s 88.9% CPU use with 2 MPI tasks x 1 OpenMP threads 249s 249s Minimization stats: 249s Stopping criterion = force tolerance 249s Energy initial, next-to-last, final = 249s -6.29375358358574 -6.33442531515467 -6.33442531515467 249s Force two-norm initial, final = 3395.2895 5.526433e-10 249s Force max component initial, final = 1960.2713 3.2059964e-10 249s Final line search alpha, max atom move = 1 3.2059964e-10 249s Iterations, force evaluations = 134 137 249s 249s MPI task timing breakdown: 249s Section | min time | avg time | max time |%varavg| %total 249s --------------------------------------------------------------- 249s Pair | 0.019731 | 0.02177 | 0.023809 | 1.4 | 61.56 249s Neigh | 0.00040779 | 0.00045221 | 0.00049664 | 0.0 | 1.28 249s Comm | 0.0041504 | 0.0061985 | 0.0082466 | 2.6 | 17.53 249s Output | 2.1482e-05 | 7.7126e-05 | 0.00013277 | 0.0 | 0.22 249s Modify | 0 | 0 | 0 | 0.0 | 0.00 249s Other | | 0.006868 | | | 19.42 249s 249s Nlocal: 500 ave 550 max 450 min 249s Histogram: 1 0 0 0 0 0 0 0 0 1 249s Nghost: 1214 ave 1264 max 1164 min 249s Histogram: 1 0 0 0 0 0 0 0 0 1 249s Neighs: 10500 ave 11550 max 9450 min 249s Histogram: 1 0 0 0 0 0 0 0 0 1 249s 249s Total # of neighbors = 21000 249s Ave neighs/atom = 21 249s Neighbor list builds = 1 249s Dangerous builds = 0 249s System init for write_restart ... 249s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 249s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 249s using 1 OpenMP thread(s) per MPI task 249s Reading restart file ... 249s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 249s restoring atom style atomic from restart 249s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 249s 1 by 1 by 2 MPI processor grid 249s restoring pair style lj/cubic from restart 249s 1000 atoms 249s read_restart CPU = 0.001 seconds 249s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 249s Neighbor list info ... 249s update: every = 1 steps, delay = 0 steps, check = yes 249s max neighbors/atom: 2000, page size: 100000 249s master list distance cutoff = 1.7475372 249s ghost atom cutoff = 1.7475372 249s binsize = 0.87376862, bins = 8 12 12 249s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 249s (1) pair lj/cubic, perpetual 249s attributes: half, newton on 249s pair build: half/bin/atomonly/newton 249s stencil: half/bin/3d 249s bin: standard 249s Setting up Verlet run ... 249s Unit style : lj 249s Current step : 0 249s Time step : 0.001 249s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 249s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 249s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 249s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 250s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 250s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 250s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 251s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 251s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 251s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 252s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 252s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 252s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 252s Loop time of 2.96291 on 2 procs for 10000 steps with 1000 atoms 252s 252s Performance: 291605.467 tau/day, 3375.063 timesteps/s, 3.375 Matom-step/s 252s 94.4% CPU use with 2 MPI tasks x 1 OpenMP threads 252s 252s MPI task timing breakdown: 252s Section | min time | avg time | max time |%varavg| %total 252s --------------------------------------------------------------- 252s Pair | 2.0031 | 2.0084 | 2.0138 | 0.4 | 67.79 252s Neigh | 0.086975 | 0.088775 | 0.090574 | 0.6 | 3.00 252s Comm | 0.39097 | 0.39825 | 0.40553 | 1.2 | 13.44 252s Output | 0.00060516 | 0.0010023 | 0.0013994 | 1.3 | 0.03 252s Modify | 0.41676 | 0.41937 | 0.42199 | 0.4 | 14.15 252s Other | | 0.04707 | | | 1.59 252s 252s Nlocal: 500 ave 509 max 491 min 252s Histogram: 1 0 0 0 0 0 0 0 0 1 252s Nghost: 1346.5 ave 1369 max 1324 min 252s Histogram: 1 0 0 0 0 0 0 0 0 1 252s Neighs: 10311.5 ave 10391 max 10232 min 252s Histogram: 1 0 0 0 0 0 0 0 0 1 252s 252s Total # of neighbors = 20623 252s Ave neighs/atom = 20.623 252s Neighbor list builds = 205 252s Dangerous builds = 0 252s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 252s using 1 OpenMP thread(s) per MPI task 252s Reading restart file ... 252s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 252s restoring atom style atomic from restart 252s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 252s 1 by 1 by 2 MPI processor grid 252s restoring pair style lj/cubic from restart 252s 1000 atoms 252s read_restart CPU = 0.001 seconds 252s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 252s Neighbor list info ... 252s update: every = 1 steps, delay = 0 steps, check = yes 252s max neighbors/atom: 2000, page size: 100000 252s master list distance cutoff = 1.7475372 252s ghost atom cutoff = 1.7475372 252s binsize = 0.87376862, bins = 8 12 12 252s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 252s (1) pair lj/cubic, perpetual 252s attributes: half, newton on 252s pair build: half/bin/atomonly/newton 252s stencil: half/bin/3d 252s bin: standard 252s Setting up Verlet run ... 252s Unit style : lj 252s Current step : 0 252s Time step : 0.001 252s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 252s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 252s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 252s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 253s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 253s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 253s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 253s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 254s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 254s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 254s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 254s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 255s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 255s Loop time of 2.57574 on 2 procs for 10000 steps with 1000 atoms 255s 255s Performance: 335437.910 tau/day, 3882.383 timesteps/s, 3.882 Matom-step/s 255s 94.5% CPU use with 2 MPI tasks x 1 OpenMP threads 255s 255s MPI task timing breakdown: 255s Section | min time | avg time | max time |%varavg| %total 255s --------------------------------------------------------------- 255s Pair | 1.7607 | 1.7814 | 1.8021 | 1.6 | 69.16 255s Neigh | 0.0043401 | 0.0043743 | 0.0044086 | 0.1 | 0.17 255s Comm | 0.31249 | 0.33171 | 0.35093 | 3.3 | 12.88 255s Output | 0.00058544 | 0.0013393 | 0.0020931 | 2.1 | 0.05 255s Modify | 0.41192 | 0.412 | 0.41207 | 0.0 | 16.00 255s Other | | 0.04489 | | | 1.74 255s 255s Nlocal: 500 ave 508 max 492 min 255s Histogram: 1 0 0 0 0 0 0 0 0 1 255s Nghost: 1214 ave 1222 max 1206 min 255s Histogram: 1 0 0 0 0 0 0 0 0 1 255s Neighs: 10500 ave 10668 max 10332 min 255s Histogram: 1 0 0 0 0 0 0 0 0 1 255s 255s Total # of neighbors = 21000 255s Ave neighs/atom = 21 255s Neighbor list builds = 10 255s Dangerous builds = 0 255s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 255s using 1 OpenMP thread(s) per MPI task 255s Reading restart file ... 255s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 255s restoring atom style atomic from restart 255s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 255s 1 by 1 by 2 MPI processor grid 255s restoring pair style lj/cubic from restart 255s 1000 atoms 255s read_restart CPU = 0.001 seconds 255s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 255s Neighbor list info ... 255s update: every = 1 steps, delay = 0 steps, check = yes 255s max neighbors/atom: 2000, page size: 100000 255s master list distance cutoff = 1.7475372 255s ghost atom cutoff = 1.7475372 255s binsize = 0.87376862, bins = 8 12 12 255s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 255s (1) pair lj/cubic, perpetual 255s attributes: half, newton on 255s pair build: half/bin/atomonly/newton 255s stencil: half/bin/3d 255s bin: standard 255s Setting up Verlet run ... 255s Unit style : lj 255s Current step : 0 255s Time step : 0.001 255s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 255s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 255s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 255s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 255s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 255s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 256s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 256s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 256s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 257s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 257s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 257s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 257s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 257s Loop time of 2.65012 on 2 procs for 10000 steps with 1000 atoms 257s 257s Performance: 326023.502 tau/day, 3773.420 timesteps/s, 3.773 Matom-step/s 257s 93.9% CPU use with 2 MPI tasks x 1 OpenMP threads 257s 257s MPI task timing breakdown: 257s Section | min time | avg time | max time |%varavg| %total 257s --------------------------------------------------------------- 257s Pair | 1.8062 | 1.8107 | 1.8152 | 0.3 | 68.33 257s Neigh | 0.041943 | 0.041945 | 0.041948 | 0.0 | 1.58 257s Comm | 0.3254 | 0.33101 | 0.33663 | 1.0 | 12.49 257s Output | 0.00057148 | 0.001494 | 0.0024166 | 2.4 | 0.06 257s Modify | 0.41751 | 0.41943 | 0.42136 | 0.3 | 15.83 257s Other | | 0.04551 | | | 1.72 257s 257s Nlocal: 500 ave 510 max 490 min 257s Histogram: 1 0 0 0 0 0 0 0 0 1 257s Nghost: 1216.5 ave 1227 max 1206 min 257s Histogram: 1 0 0 0 0 0 0 0 0 1 257s Neighs: 10311 ave 10520 max 10102 min 257s Histogram: 1 0 0 0 0 0 0 0 0 1 257s 257s Total # of neighbors = 20622 257s Ave neighs/atom = 20.622 257s Neighbor list builds = 95 257s Dangerous builds = 0 257s Total wall time: 0:00:08 257s LAMMPS (7 Feb 2024 - Update 1) 258s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 258s using 1 OpenMP thread(s) per MPI task 258s Lattice spacing in x,y,z = 1.4142135 2 2 258s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 258s 1 by 1 by 1 MPI processor grid 258s Created 1000 atoms 258s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 258s create_atoms CPU = 0.000 seconds 258s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 258s Neighbor list info ... 258s update: every = 1 steps, delay = 0 steps, check = yes 258s max neighbors/atom: 2000, page size: 100000 258s master list distance cutoff = 1.8475372 258s ghost atom cutoff = 1.8475372 258s binsize = 0.92376862, bins = 8 11 11 258s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 258s (1) pair lj/cubic, perpetual 258s attributes: half, newton on 258s pair build: half/bin/atomonly/newton 258s stencil: half/bin/3d 258s bin: standard 258s Setting up cg style minimization ... 258s Unit style : lj 258s Current step : 0 258s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 258s (src/min.cpp:219) 258s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 258s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 258s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 258s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 258s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 258s Loop time of 0.0537903 on 1 procs for 134 steps with 1000 atoms 258s 258s 98.2% CPU use with 1 MPI tasks x 1 OpenMP threads 258s 258s Minimization stats: 258s Stopping criterion = force tolerance 258s Energy initial, next-to-last, final = 258s -6.29375358358556 -6.33442531515503 -6.33442531515503 258s Force two-norm initial, final = 3395.2895 5.6047601e-10 258s Force max component initial, final = 1960.2713 3.2666928e-10 258s Final line search alpha, max atom move = 1 3.2666928e-10 258s Iterations, force evaluations = 134 137 258s 258s MPI task timing breakdown: 258s Section | min time | avg time | max time |%varavg| %total 258s --------------------------------------------------------------- 258s Pair | 0.042774 | 0.042774 | 0.042774 | 0.0 | 79.52 258s Neigh | 0.00082113 | 0.00082113 | 0.00082113 | 0.0 | 1.53 258s Comm | 0.0012221 | 0.0012221 | 0.0012221 | 0.0 | 2.27 258s Output | 3.0962e-05 | 3.0962e-05 | 3.0962e-05 | 0.0 | 0.06 258s Modify | 0 | 0 | 0 | 0.0 | 0.00 258s Other | | 0.008942 | | | 16.62 258s 258s Nlocal: 1000 ave 1000 max 1000 min 258s Histogram: 1 0 0 0 0 0 0 0 0 0 258s Nghost: 1724 ave 1724 max 1724 min 258s Histogram: 1 0 0 0 0 0 0 0 0 0 258s Neighs: 21000 ave 21000 max 21000 min 258s Histogram: 1 0 0 0 0 0 0 0 0 0 258s 258s Total # of neighbors = 21000 258s Ave neighs/atom = 21 258s Neighbor list builds = 1 258s Dangerous builds = 0 258s System init for write_restart ... 258s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 258s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 258s using 1 OpenMP thread(s) per MPI task 258s Reading restart file ... 258s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 258s restoring atom style atomic from restart 258s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 258s 1 by 1 by 1 MPI processor grid 258s restoring pair style lj/cubic from restart 258s 1000 atoms 258s read_restart CPU = 0.001 seconds 258s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 258s Neighbor list info ... 258s update: every = 1 steps, delay = 0 steps, check = yes 258s max neighbors/atom: 2000, page size: 100000 258s master list distance cutoff = 1.7475372 258s ghost atom cutoff = 1.7475372 258s binsize = 0.87376862, bins = 8 12 12 258s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 262s (1) pair lj/cubic, perpetual 262s attributes: half, newton on 262s pair build: half/bin/atomonly/newton 262s stencil: half/bin/3d 262s bin: standard 262s Setting up Verlet run ... 262s Unit style : lj 262s Current step : 0 262s Time step : 0.001 262s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 262s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 262s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 262s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 262s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 262s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 262s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 262s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 262s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 262s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 262s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 262s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 262s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 262s Loop time of 4.94636 on 1 procs for 10000 steps with 1000 atoms 262s 262s Performance: 174673.912 tau/day, 2021.689 timesteps/s, 2.022 Matom-step/s 262s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 262s 262s MPI task timing breakdown: 262s Section | min time | avg time | max time |%varavg| %total 262s --------------------------------------------------------------- 262s Pair | 4.0404 | 4.0404 | 4.0404 | 0.0 | 81.69 262s Neigh | 0.16406 | 0.16406 | 0.16406 | 0.0 | 3.32 262s Comm | 0.09779 | 0.09779 | 0.09779 | 0.0 | 1.98 262s Output | 0.00053791 | 0.00053791 | 0.00053791 | 0.0 | 0.01 262s Modify | 0.59761 | 0.59761 | 0.59761 | 0.0 | 12.08 262s Other | | 0.04593 | | | 0.93 262s 262s Nlocal: 1000 ave 1000 max 1000 min 262s Histogram: 1 0 0 0 0 0 0 0 0 0 262s Nghost: 1886 ave 1886 max 1886 min 262s Histogram: 1 0 0 0 0 0 0 0 0 0 262s Neighs: 20874 ave 20874 max 20874 min 262s Histogram: 1 0 0 0 0 0 0 0 0 0 262s 262s Total # of neighbors = 20874 262s Ave neighs/atom = 20.874 262s Neighbor list builds = 188 262s Dangerous builds = 0 262s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 262s using 1 OpenMP thread(s) per MPI task 262s Reading restart file ... 262s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 262s restoring atom style atomic from restart 262s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 262s 1 by 1 by 1 MPI processor grid 262s restoring pair style lj/cubic from restart 262s 1000 atoms 262s read_restart CPU = 0.001 seconds 262s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 262s Neighbor list info ... 267s update: every = 1 steps, delay = 0 steps, check = yes 267s max neighbors/atom: 2000, page size: 100000 267s master list distance cutoff = 1.7475372 267s ghost atom cutoff = 1.7475372 267s binsize = 0.87376862, bins = 8 12 12 267s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 267s (1) pair lj/cubic, perpetual 267s attributes: half, newton on 267s pair build: half/bin/atomonly/newton 267s stencil: half/bin/3d 267s bin: standard 267s Setting up Verlet run ... 267s Unit style : lj 267s Current step : 0 267s Time step : 0.001 267s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 267s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 267s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 267s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 267s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 267s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 267s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 267s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 267s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 267s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 267s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 267s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 267s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 267s Loop time of 4.29673 on 1 procs for 10000 steps with 1000 atoms 267s 267s Performance: 201083.049 tau/day, 2327.350 timesteps/s, 2.327 Matom-step/s 267s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 267s 267s MPI task timing breakdown: 267s Section | min time | avg time | max time |%varavg| %total 267s --------------------------------------------------------------- 267s Pair | 3.5645 | 3.5645 | 3.5645 | 0.0 | 82.96 267s Neigh | 0.0093599 | 0.0093599 | 0.0093599 | 0.0 | 0.22 267s Comm | 0.088076 | 0.088076 | 0.088076 | 0.0 | 2.05 267s Output | 0.00058811 | 0.00058811 | 0.00058811 | 0.0 | 0.01 267s Modify | 0.59106 | 0.59106 | 0.59106 | 0.0 | 13.76 267s Other | | 0.04314 | | | 1.00 267s 267s Nlocal: 1000 ave 1000 max 1000 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s Nghost: 1724 ave 1724 max 1724 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s Neighs: 21000 ave 21000 max 21000 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s 267s Total # of neighbors = 21000 267s Ave neighs/atom = 21 267s Neighbor list builds = 11 267s Dangerous builds = 0 267s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 267s using 1 OpenMP thread(s) per MPI task 267s Reading restart file ... 267s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 267s restoring atom style atomic from restart 271s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 271s 1 by 1 by 1 MPI processor grid 271s restoring pair style lj/cubic from restart 271s 1000 atoms 271s read_restart CPU = 0.001 seconds 271s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 271s Neighbor list info ... 271s update: every = 1 steps, delay = 0 steps, check = yes 271s max neighbors/atom: 2000, page size: 100000 271s master list distance cutoff = 1.7475372 271s ghost atom cutoff = 1.7475372 271s binsize = 0.87376862, bins = 8 12 12 271s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 271s (1) pair lj/cubic, perpetual 271s attributes: half, newton on 271s pair build: half/bin/atomonly/newton 271s stencil: half/bin/3d 271s bin: standard 271s Setting up Verlet run ... 271s Unit style : lj 271s Current step : 0 271s Time step : 0.001 271s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 271s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 271s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 271s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 271s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 271s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 271s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 271s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 271s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 271s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 271s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 271s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 271s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 271s Loop time of 4.44496 on 1 procs for 10000 steps with 1000 atoms 271s 271s Performance: 194377.313 tau/day, 2249.737 timesteps/s, 2.250 Matom-step/s 271s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 271s 271s MPI task timing breakdown: 271s Section | min time | avg time | max time |%varavg| %total 271s --------------------------------------------------------------- 271s Pair | 3.6294 | 3.6294 | 3.6294 | 0.0 | 81.65 271s Neigh | 0.082529 | 0.082529 | 0.082529 | 0.0 | 1.86 271s Comm | 0.089022 | 0.089022 | 0.089022 | 0.0 | 2.00 271s Output | 0.00051051 | 0.00051051 | 0.00051051 | 0.0 | 0.01 271s Modify | 0.5994 | 0.5994 | 0.5994 | 0.0 | 13.48 271s Other | | 0.04413 | | | 0.99 271s 271s Nlocal: 1000 ave 1000 max 1000 min 271s Histogram: 1 0 0 0 0 0 0 0 0 0 271s Nghost: 1724 ave 1724 max 1724 min 271s Histogram: 1 0 0 0 0 0 0 0 0 0 271s Neighs: 20654 ave 20654 max 20654 min 271s Histogram: 1 0 0 0 0 0 0 0 0 0 271s 271s Total # of neighbors = 20654 271s Ave neighs/atom = 20.654 271s Neighbor list builds = 94 271s Dangerous builds = 0 271s Total wall time: 0:00:13 271s run: OK 272s autopkgtest [08:41:55]: test hugo: -----------------------] 272s hugo PASS 272s autopkgtest [08:41:55]: test hugo: - - - - - - - - - - results - - - - - - - - - - 273s autopkgtest [08:41:56]: test command1: preparing testbed 381s autopkgtest [08:43:44]: testbed dpkg architecture: arm64 382s autopkgtest [08:43:45]: testbed apt version: 3.0.0 382s autopkgtest [08:43:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 382s autopkgtest [08:43:45]: testbed release detected to be: questing 383s autopkgtest [08:43:46]: updating testbed package index (apt update) 383s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 384s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 384s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 384s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 384s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 384s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB] 384s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB] 384s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [219 kB] 384s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1509 kB] 384s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 385s Fetched 4149 kB in 1s (3153 kB/s) 386s Reading package lists... 387s autopkgtest [08:43:50]: upgrading testbed (apt dist-upgrade and autopurge) 387s Reading package lists... 388s Building dependency tree... 388s Reading state information... 389s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 389s Starting 2 pkgProblemResolver with broken count: 0 389s Done 391s Entering ResolveByKeep 391s 392s Calculating upgrade... 393s The following packages will be upgraded: 393s htop libpython3.13 libpython3.13-minimal libpython3.13-stdlib mtd-utils nano 393s python3.13 python3.13-gdbm python3.13-minimal 393s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 393s Need to get 9181 kB of archives. 393s After this operation, 727 kB of additional disk space will be used. 393s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 python3.13 arm64 3.13.3-2 [739 kB] 394s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libpython3.13 arm64 3.13.3-2 [2281 kB] 394s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [2038 kB] 394s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 python3.13-minimal arm64 3.13.3-2 [2273 kB] 394s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libpython3.13-minimal arm64 3.13.3-2 [881 kB] 394s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 394s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 394s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 python3.13-gdbm arm64 3.13.3-2 [31.5 kB] 394s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 395s Fetched 9181 kB in 1s (8377 kB/s) 395s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 395s Preparing to unpack .../0-python3.13_3.13.3-2_arm64.deb ... 395s Unpacking python3.13 (3.13.3-2) over (3.13.3-1) ... 395s Preparing to unpack .../1-libpython3.13_3.13.3-2_arm64.deb ... 395s Unpacking libpython3.13:arm64 (3.13.3-2) over (3.13.3-1) ... 395s Preparing to unpack .../2-libpython3.13-stdlib_3.13.3-2_arm64.deb ... 396s Unpacking libpython3.13-stdlib:arm64 (3.13.3-2) over (3.13.3-1) ... 396s Preparing to unpack .../3-python3.13-minimal_3.13.3-2_arm64.deb ... 396s Unpacking python3.13-minimal (3.13.3-2) over (3.13.3-1) ... 396s Preparing to unpack .../4-libpython3.13-minimal_3.13.3-2_arm64.deb ... 396s Unpacking libpython3.13-minimal:arm64 (3.13.3-2) over (3.13.3-1) ... 396s Preparing to unpack .../5-nano_8.4-1_arm64.deb ... 396s Unpacking nano (8.4-1) over (8.3-1) ... 396s Preparing to unpack .../6-htop_3.4.1-4_arm64.deb ... 396s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 396s Preparing to unpack .../7-python3.13-gdbm_3.13.3-2_arm64.deb ... 396s Unpacking python3.13-gdbm (3.13.3-2) over (3.13.3-1) ... 397s Preparing to unpack .../8-mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 397s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 397s Setting up htop (3.4.1-4) ... 397s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 397s Setting up libpython3.13-minimal:arm64 (3.13.3-2) ... 397s Setting up nano (8.4-1) ... 397s Installing new version of config file /etc/nanorc ... 397s Setting up python3.13-minimal (3.13.3-2) ... 398s Setting up libpython3.13-stdlib:arm64 (3.13.3-2) ... 398s Setting up python3.13-gdbm (3.13.3-2) ... 398s Setting up libpython3.13:arm64 (3.13.3-2) ... 399s Setting up python3.13 (3.13.3-2) ... 400s Processing triggers for systemd (257.4-1ubuntu3) ... 400s Processing triggers for man-db (2.13.0-1) ... 402s Processing triggers for install-info (7.1.1-1) ... 402s Processing triggers for libc-bin (2.41-6ubuntu1) ... 403s Reading package lists... 403s Building dependency tree... 403s Reading state information... 404s Starting pkgProblemResolver with broken count: 0 405s Starting 2 pkgProblemResolver with broken count: 0 405s Done 406s Solving dependencies... 407s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 410s Reading package lists... 411s Building dependency tree... 411s Reading state information... 411s Starting pkgProblemResolver with broken count: 0 411s Starting 2 pkgProblemResolver with broken count: 0 411s Done 413s The following NEW packages will be installed: 413s autoconf automake autotools-dev cpp-14 cpp-14-aarch64-linux-gnu 413s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14 413s gcc-14-aarch64-linux-gnu gfortran-14 gfortran-14-aarch64-linux-gnu libaec0 413s libamd-comgr2 libamdhip64-5 libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 413s libdouble-conversion3 libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 413s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 413s libfftw3-double3 libfontconfig1 libgbm1 libgcc-14-dev libgfortran-14-dev 413s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 413s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 413s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 413s libibumad3 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 413s libjs-jquery libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev 413s liblammps0t64 liblapack3 liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 413s libmpc3 libmunge2 libnetcdf22 libnl-3-dev libnl-route-3-dev libnuma-dev 413s libogg0 libopengl0 libopenmpi-dev libopenmpi40 libpciaccess0 libpixman-1-0 413s libpmix-dev libpmix2t64 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 413s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 413s libtheoraenc1 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 413s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 413s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 413s libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 413s libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin mpi-default-dev 413s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 413s x11-common zlib1g-dev 413s 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded. 413s Need to get 185 MB of archives. 413s After this operation, 743 MB of additional disk space will be used. 413s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 m4 arm64 1.4.19-7 [244 kB] 413s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 autoconf all 2.72-3ubuntu1 [383 kB] 414s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 autotools-dev all 20220109.1 [44.9 kB] 414s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 automake all 1:1.17-3ubuntu1 [572 kB] 414s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB] 414s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 414s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [10.6 MB] 414s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14 arm64 14.2.0-19ubuntu2 [1026 B] 414s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 414s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 414s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 414s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libcc1-0 arm64 15-20250404-0ubuntu1 [49.1 kB] 414s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 414s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libitm1 arm64 15-20250404-0ubuntu1 [27.8 kB] 414s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libasan8 arm64 15-20250404-0ubuntu1 [2922 kB] 414s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 liblsan0 arm64 15-20250404-0ubuntu1 [1318 kB] 414s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libtsan2 arm64 15-20250404-0ubuntu1 [2692 kB] 415s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libubsan1 arm64 15-20250404-0ubuntu1 [1177 kB] 415s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libhwasan0 arm64 15-20250404-0ubuntu1 [1640 kB] 415s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libgcc-14-dev arm64 14.2.0-19ubuntu2 [2593 kB] 415s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [20.9 MB] 415s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14 arm64 14.2.0-19ubuntu2 [529 kB] 415s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 415s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran-14-dev arm64 14.2.0-19ubuntu2 [498 kB] 415s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [11.4 MB] 416s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14 arm64 14.2.0-19ubuntu2 [14.2 kB] 416s Get:27 http://ftpmaster.internal/ubuntu questing/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 416s Get:28 http://ftpmaster.internal/ubuntu questing/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 416s Get:29 http://ftpmaster.internal/ubuntu questing/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 416s Get:30 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 416s Get:31 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 416s Get:32 http://ftpmaster.internal/ubuntu questing/universe arm64 libamdhip64-5 arm64 5.7.1-5build1 [9707 kB] 417s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 417s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 417s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 417s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 417s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 417s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 417s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 417s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 417s Get:41 http://ftpmaster.internal/ubuntu questing/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 417s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 417s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10 [62.0 kB] 417s Get:44 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 417s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10 [14.7 kB] 417s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-dev arm64 2.1.12-stable-10 [283 kB] 417s Get:47 http://ftpmaster.internal/ubuntu questing/main arm64 librdmacm1t64 arm64 56.0-4ubuntu1 [71.4 kB] 417s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 417s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 417s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 417s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 417s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 417s Get:53 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 417s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 417s Get:55 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 417s Get:56 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 417s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 417s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 mesa-libgallium arm64 25.0.3-1ubuntu2 [9455 kB] 417s Get:59 http://ftpmaster.internal/ubuntu questing/main arm64 libgbm1 arm64 25.0.3-1ubuntu2 [33.7 kB] 417s Get:60 http://ftpmaster.internal/ubuntu questing/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 417s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1-mesa-dri arm64 25.0.3-1ubuntu2 [35.4 kB] 417s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 417s Get:63 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 417s Get:64 http://ftpmaster.internal/ubuntu questing/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 417s Get:65 http://ftpmaster.internal/ubuntu questing/main arm64 libglx-mesa0 arm64 25.0.3-1ubuntu2 [151 kB] 417s Get:66 http://ftpmaster.internal/ubuntu questing/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 417s Get:67 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 417s Get:68 http://ftpmaster.internal/ubuntu questing/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 417s Get:69 http://ftpmaster.internal/ubuntu questing/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 417s Get:70 http://ftpmaster.internal/ubuntu questing/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 417s Get:71 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 417s Get:72 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 417s Get:73 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 417s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 417s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 417s Get:76 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 417s Get:77 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 417s Get:78 http://ftpmaster.internal/ubuntu questing/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 417s Get:79 http://ftpmaster.internal/ubuntu questing/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 417s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 417s Get:81 http://ftpmaster.internal/ubuntu questing/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 417s Get:82 http://ftpmaster.internal/ubuntu questing/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 417s Get:83 http://ftpmaster.internal/ubuntu questing/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 417s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 417s Get:85 http://ftpmaster.internal/ubuntu questing/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 417s Get:86 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 417s Get:87 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 417s Get:88 http://ftpmaster.internal/ubuntu questing/main arm64 libibumad3 arm64 56.0-4ubuntu1 [31.3 kB] 417s Get:89 http://ftpmaster.internal/ubuntu questing/main arm64 libibmad5 arm64 56.0-4ubuntu1 [44.1 kB] 417s Get:90 http://ftpmaster.internal/ubuntu questing/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 417s Get:91 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 418s Get:92 http://ftpmaster.internal/ubuntu questing/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 418s Get:93 http://ftpmaster.internal/ubuntu questing/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 418s Get:94 http://ftpmaster.internal/ubuntu questing/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 418s Get:95 http://ftpmaster.internal/ubuntu questing/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 418s Get:96 http://ftpmaster.internal/ubuntu questing/universe arm64 proj-data all 9.5.1-1 [7924 kB] 418s Get:97 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 418s Get:98 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 418s Get:99 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 418s Get:100 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 418s Get:101 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 418s Get:102 http://ftpmaster.internal/ubuntu questing/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 418s Get:103 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 418s Get:104 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 418s Get:105 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 418s Get:106 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 418s Get:107 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 418s Get:108 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 418s Get:109 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 418s Get:110 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 418s Get:111 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 418s Get:112 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 419s Get:113 http://ftpmaster.internal/ubuntu questing/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu1 [24.0 MB] 420s Get:114 http://ftpmaster.internal/ubuntu questing/universe arm64 liblammps0t64 arm64 20240207+dfsg-3build3 [6834 kB] 420s Get:115 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 420s Get:116 http://ftpmaster.internal/ubuntu questing/main arm64 libnl-3-dev arm64 3.7.0-2 [105 kB] 420s Get:117 http://ftpmaster.internal/ubuntu questing/main arm64 libnl-route-3-dev arm64 3.7.0-2 [226 kB] 420s Get:118 http://ftpmaster.internal/ubuntu questing/main arm64 libibverbs-dev arm64 56.0-4ubuntu1 [705 kB] 420s Get:119 http://ftpmaster.internal/ubuntu questing/main arm64 libnuma-dev arm64 2.0.18-1build1 [39.6 kB] 420s Get:120 http://ftpmaster.internal/ubuntu questing/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 420s Get:121 http://ftpmaster.internal/ubuntu questing/main arm64 libltdl-dev arm64 2.5.4-4 [173 kB] 420s Get:122 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-dev arm64 2.12.0-1 [266 kB] 420s Get:123 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 420s Get:124 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix-dev arm64 5.0.6-5 [4055 kB] 420s Get:125 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 420s Get:126 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi-dev arm64 5.0.7-1 [1085 kB] 420s Get:127 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-dev arm64 1.18 [3324 B] 420s Get:128 http://ftpmaster.internal/ubuntu questing/universe arm64 liblammps-dev arm64 20240207+dfsg-3build3 [112 kB] 420s Get:129 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 420s Get:130 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-lammps arm64 20240207+dfsg-3build3 [70.5 kB] 421s Fetched 185 MB in 7s (25.5 MB/s) 421s Selecting previously unselected package m4. 421s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117821 files and directories currently installed.) 421s Preparing to unpack .../000-m4_1.4.19-7_arm64.deb ... 421s Unpacking m4 (1.4.19-7) ... 421s Selecting previously unselected package autoconf. 421s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 421s Unpacking autoconf (2.72-3ubuntu1) ... 421s Selecting previously unselected package autotools-dev. 421s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 421s Unpacking autotools-dev (20220109.1) ... 421s Selecting previously unselected package automake. 421s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 421s Unpacking automake (1:1.17-3ubuntu1) ... 421s Selecting previously unselected package libisl23:arm64. 421s Preparing to unpack .../004-libisl23_0.27-1_arm64.deb ... 421s Unpacking libisl23:arm64 (0.27-1) ... 422s Selecting previously unselected package libmpc3:arm64. 422s Preparing to unpack .../005-libmpc3_1.3.1-1build2_arm64.deb ... 422s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 422s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 422s Preparing to unpack .../006-cpp-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 422s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 422s Selecting previously unselected package cpp-14. 422s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_arm64.deb ... 422s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 422s Selecting previously unselected package fonts-dejavu-mono. 422s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 422s Unpacking fonts-dejavu-mono (2.37-8) ... 422s Selecting previously unselected package fonts-dejavu-core. 422s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 422s Unpacking fonts-dejavu-core (2.37-8) ... 422s Selecting previously unselected package fontconfig-config. 422s Preparing to unpack .../010-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 423s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 423s Selecting previously unselected package libcc1-0:arm64. 423s Preparing to unpack .../011-libcc1-0_15-20250404-0ubuntu1_arm64.deb ... 423s Unpacking libcc1-0:arm64 (15-20250404-0ubuntu1) ... 423s Selecting previously unselected package libgomp1:arm64. 423s Preparing to unpack .../012-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 423s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 423s Selecting previously unselected package libitm1:arm64. 423s Preparing to unpack .../013-libitm1_15-20250404-0ubuntu1_arm64.deb ... 423s Unpacking libitm1:arm64 (15-20250404-0ubuntu1) ... 423s Selecting previously unselected package libasan8:arm64. 423s Preparing to unpack .../014-libasan8_15-20250404-0ubuntu1_arm64.deb ... 423s Unpacking libasan8:arm64 (15-20250404-0ubuntu1) ... 423s Selecting previously unselected package liblsan0:arm64. 423s Preparing to unpack .../015-liblsan0_15-20250404-0ubuntu1_arm64.deb ... 423s Unpacking liblsan0:arm64 (15-20250404-0ubuntu1) ... 423s Selecting previously unselected package libtsan2:arm64. 423s Preparing to unpack .../016-libtsan2_15-20250404-0ubuntu1_arm64.deb ... 423s Unpacking libtsan2:arm64 (15-20250404-0ubuntu1) ... 423s Selecting previously unselected package libubsan1:arm64. 423s Preparing to unpack .../017-libubsan1_15-20250404-0ubuntu1_arm64.deb ... 423s Unpacking libubsan1:arm64 (15-20250404-0ubuntu1) ... 424s Selecting previously unselected package libhwasan0:arm64. 424s Preparing to unpack .../018-libhwasan0_15-20250404-0ubuntu1_arm64.deb ... 424s Unpacking libhwasan0:arm64 (15-20250404-0ubuntu1) ... 424s Selecting previously unselected package libgcc-14-dev:arm64. 424s Preparing to unpack .../019-libgcc-14-dev_14.2.0-19ubuntu2_arm64.deb ... 424s Unpacking libgcc-14-dev:arm64 (14.2.0-19ubuntu2) ... 424s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 424s Preparing to unpack .../020-gcc-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 424s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 424s Selecting previously unselected package gcc-14. 424s Preparing to unpack .../021-gcc-14_14.2.0-19ubuntu2_arm64.deb ... 424s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 424s Selecting previously unselected package libgfortran5:arm64. 424s Preparing to unpack .../022-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 424s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 425s Selecting previously unselected package libgfortran-14-dev:arm64. 425s Preparing to unpack .../023-libgfortran-14-dev_14.2.0-19ubuntu2_arm64.deb ... 425s Unpacking libgfortran-14-dev:arm64 (14.2.0-19ubuntu2) ... 425s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 425s Preparing to unpack .../024-gfortran-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 425s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 425s Selecting previously unselected package gfortran-14. 425s Preparing to unpack .../025-gfortran-14_14.2.0-19ubuntu2_arm64.deb ... 425s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 425s Selecting previously unselected package libaec0:arm64. 425s Preparing to unpack .../026-libaec0_1.1.3-1_arm64.deb ... 425s Unpacking libaec0:arm64 (1.1.3-1) ... 425s Selecting previously unselected package libllvm17t64:arm64. 425s Preparing to unpack .../027-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 425s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 426s Selecting previously unselected package libamd-comgr2:arm64. 426s Preparing to unpack .../028-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 426s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 426s Selecting previously unselected package libhsakmt1:arm64. 426s Preparing to unpack .../029-libhsakmt1_5.7.0-1build1_arm64.deb ... 426s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 426s Selecting previously unselected package libhsa-runtime64-1. 427s Preparing to unpack .../030-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 427s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 427s Selecting previously unselected package libamdhip64-5. 427s Preparing to unpack .../031-libamdhip64-5_5.7.1-5build1_arm64.deb ... 427s Unpacking libamdhip64-5 (5.7.1-5build1) ... 427s Selecting previously unselected package libblas3:arm64. 427s Preparing to unpack .../032-libblas3_3.12.1-2_arm64.deb ... 427s Unpacking libblas3:arm64 (3.12.1-2) ... 427s Selecting previously unselected package libfontconfig1:arm64. 427s Preparing to unpack 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427s Unpacking libcairo2:arm64 (1.18.4-1) ... 427s Selecting previously unselected package libdeflate0:arm64. 427s Preparing to unpack .../039-libdeflate0_1.23-1_arm64.deb ... 427s Unpacking libdeflate0:arm64 (1.23-1) ... 427s Selecting previously unselected package libdouble-conversion3:arm64. 427s Preparing to unpack .../040-libdouble-conversion3_3.3.1-1_arm64.deb ... 427s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 428s Selecting previously unselected package libevent-2.1-7t64:arm64. 428s Preparing to unpack .../041-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... 428s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 428s Selecting previously unselected package libevent-extra-2.1-7t64:arm64. 428s Preparing to unpack .../042-libevent-extra-2.1-7t64_2.1.12-stable-10_arm64.deb ... 428s Unpacking libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10) ... 428s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 428s Preparing to unpack .../043-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 428s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 428s Selecting previously unselected package libevent-openssl-2.1-7t64:arm64. 428s Preparing to unpack .../044-libevent-openssl-2.1-7t64_2.1.12-stable-10_arm64.deb ... 428s Unpacking libevent-openssl-2.1-7t64:arm64 (2.1.12-stable-10) ... 428s Selecting previously unselected package libevent-dev. 428s Preparing to unpack .../045-libevent-dev_2.1.12-stable-10_arm64.deb ... 428s Unpacking libevent-dev (2.1.12-stable-10) ... 428s Selecting previously unselected package librdmacm1t64:arm64. 428s Preparing to unpack .../046-librdmacm1t64_56.0-4ubuntu1_arm64.deb ... 428s Unpacking librdmacm1t64:arm64 (56.0-4ubuntu1) ... 428s Selecting previously unselected package libfabric1:arm64. 428s Preparing to unpack .../047-libfabric1_1.17.0-3.1_arm64.deb ... 428s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 428s Selecting previously unselected package libfftw3-double3:arm64. 428s Preparing to unpack .../048-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 428s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 428s Selecting previously unselected package libwayland-server0:arm64. 428s Preparing to unpack .../049-libwayland-server0_1.23.1-3_arm64.deb ... 428s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 428s Selecting previously unselected package libx11-xcb1:arm64. 428s Preparing to unpack .../050-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 428s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 428s Selecting previously unselected package libxcb-dri3-0:arm64. 428s Preparing to unpack .../051-libxcb-dri3-0_1.17.0-2_arm64.deb ... 428s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 428s Selecting previously unselected package libxcb-present0:arm64. 428s Preparing to unpack .../052-libxcb-present0_1.17.0-2_arm64.deb ... 428s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 428s Selecting previously unselected package libxcb-randr0:arm64. 428s Preparing to unpack .../053-libxcb-randr0_1.17.0-2_arm64.deb ... 428s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 428s Selecting previously unselected package libxcb-sync1:arm64. 429s Preparing to unpack .../054-libxcb-sync1_1.17.0-2_arm64.deb ... 429s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 429s Selecting previously unselected package libxcb-xfixes0:arm64. 429s Preparing to unpack .../055-libxcb-xfixes0_1.17.0-2_arm64.deb ... 429s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 429s Selecting previously unselected package libxshmfence1:arm64. 429s Preparing to unpack .../056-libxshmfence1_1.3-1build5_arm64.deb ... 429s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 429s Selecting previously unselected package mesa-libgallium:arm64. 429s Preparing to unpack .../057-mesa-libgallium_25.0.3-1ubuntu2_arm64.deb ... 429s Unpacking mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 429s Selecting previously unselected package libgbm1:arm64. 429s Preparing to unpack .../058-libgbm1_25.0.3-1ubuntu2_arm64.deb ... 429s Unpacking libgbm1:arm64 (25.0.3-1ubuntu2) ... 429s Selecting previously unselected package libvulkan1:arm64. 429s Preparing to unpack .../059-libvulkan1_1.4.304.0-1_arm64.deb ... 429s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 429s Selecting previously unselected package libgl1-mesa-dri:arm64. 429s Preparing to unpack .../060-libgl1-mesa-dri_25.0.3-1ubuntu2_arm64.deb ... 429s Unpacking libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 429s Selecting previously unselected package libglvnd0:arm64. 429s Preparing to unpack .../061-libglvnd0_1.7.0-1build1_arm64.deb ... 429s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 429s Selecting previously unselected package libxcb-glx0:arm64. 429s Preparing to unpack .../062-libxcb-glx0_1.17.0-2_arm64.deb ... 429s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 429s Selecting previously unselected package libxxf86vm1:arm64. 429s Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 429s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 430s Selecting previously unselected package libglx-mesa0:arm64. 430s Preparing to unpack .../064-libglx-mesa0_25.0.3-1ubuntu2_arm64.deb ... 430s Unpacking libglx-mesa0:arm64 (25.0.3-1ubuntu2) ... 430s Selecting previously unselected package libglx0:arm64. 430s Preparing to unpack .../065-libglx0_1.7.0-1build1_arm64.deb ... 430s Unpacking libglx0:arm64 (1.7.0-1build1) ... 430s Selecting previously unselected package libgl1:arm64. 430s Preparing to unpack .../066-libgl1_1.7.0-1build1_arm64.deb ... 430s Unpacking libgl1:arm64 (1.7.0-1build1) ... 430s Selecting previously unselected package libgl2ps1.4. 430s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 430s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 430s Selecting previously unselected package libglew2.2:arm64. 430s Preparing to unpack .../068-libglew2.2_2.2.0-4build1_arm64.deb ... 430s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 430s Selecting previously unselected package libsz2:arm64. 430s Preparing to unpack .../069-libsz2_1.1.3-1_arm64.deb ... 430s Unpacking libsz2:arm64 (1.1.3-1) ... 430s Selecting previously unselected package libhdf5-310:arm64. 430s Preparing to unpack .../070-libhdf5-310_1.14.5+repack-3_arm64.deb ... 430s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 430s Selecting previously unselected package libhdf5-hl-310:arm64. 430s Preparing to unpack .../071-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 430s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 430s Selecting previously unselected package libhwloc15:arm64. 430s Preparing to unpack .../072-libhwloc15_2.12.0-1_arm64.deb ... 430s Unpacking libhwloc15:arm64 (2.12.0-1) ... 430s Selecting previously unselected package libjpeg-turbo8:arm64. 430s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 430s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 430s Selecting previously unselected package libjpeg8:arm64. 430s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 430s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 430s Selecting previously unselected package libjs-jquery. 430s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 430s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 431s Selecting previously unselected package libjs-jquery-ui. 431s Preparing to unpack .../076-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 431s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 431s Selecting previously unselected package libjsoncpp26:arm64. 431s Preparing to unpack .../077-libjsoncpp26_1.9.6-3_arm64.deb ... 431s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 431s Selecting previously unselected package libkim-api2:arm64. 431s Preparing to unpack .../078-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 431s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 431s Selecting previously unselected package liblapack3:arm64. 431s Preparing to unpack .../079-liblapack3_3.12.1-2_arm64.deb ... 431s Unpacking liblapack3:arm64 (3.12.1-2) ... 431s Selecting previously unselected package libnetcdf22:arm64. 431s Preparing to unpack .../080-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 431s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 431s Selecting previously unselected package libmunge2:arm64. 431s Preparing to unpack .../081-libmunge2_0.5.16-1_arm64.deb ... 431s Unpacking libmunge2:arm64 (0.5.16-1) ... 431s Selecting previously unselected package libpciaccess0:arm64. 431s Preparing to unpack .../082-libpciaccess0_0.17-3build1_arm64.deb ... 431s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 431s Selecting previously unselected package libxnvctrl0:arm64. 431s Preparing to unpack .../083-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 431s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 431s Selecting previously unselected package ocl-icd-libopencl1:arm64. 431s Preparing to unpack .../084-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 431s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) 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Preparing to unpack .../090-libopenmpi40_5.0.7-1_arm64.deb ... 432s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 432s Selecting previously unselected package libpnetcdf6:arm64. 432s Preparing to unpack .../091-libpnetcdf6_1.14.0-2_arm64.deb ... 432s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 432s Selecting previously unselected package libvoro++1. 432s Preparing to unpack .../092-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 432s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 432s Selecting previously unselected package libogg0:arm64. 432s Preparing to unpack .../093-libogg0_1.3.5-3build1_arm64.deb ... 432s Unpacking libogg0:arm64 (1.3.5-3build1) ... 432s Selecting previously unselected package libopengl0:arm64. 432s Preparing to unpack .../094-libopengl0_1.7.0-1build1_arm64.deb ... 432s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 432s Selecting previously unselected package proj-data. 432s Preparing to unpack .../095-proj-data_9.5.1-1_all.deb ... 432s Unpacking proj-data (9.5.1-1) ... 433s Selecting previously unselected package libjbig0:arm64. 433s Preparing to unpack .../096-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 433s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 433s Selecting previously unselected package liblerc4:arm64. 433s Preparing to unpack .../097-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 433s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 433s Selecting previously unselected package libsharpyuv0:arm64. 433s Preparing to unpack .../098-libsharpyuv0_1.5.0-0.1_arm64.deb ... 433s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 433s Selecting previously unselected package libwebp7:arm64. 433s Preparing to unpack .../099-libwebp7_1.5.0-0.1_arm64.deb ... 433s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 433s Selecting previously unselected package libtiff6:arm64. 433s Preparing to unpack .../100-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 433s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 433s Selecting previously unselected package libproj25:arm64. 433s Preparing to unpack .../101-libproj25_9.5.1-1_arm64.deb ... 433s Unpacking libproj25:arm64 (9.5.1-1) ... 433s Selecting previously unselected package libtbbbind-2-5:arm64. 433s Preparing to unpack .../102-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 433s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 433s Selecting previously unselected package libtbbmalloc2:arm64. 433s Preparing to unpack .../103-libtbbmalloc2_2022.0.0-2_arm64.deb ... 433s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 433s Selecting previously unselected package libtbb12:arm64. 433s Preparing to unpack .../104-libtbb12_2022.0.0-2_arm64.deb ... 433s Unpacking libtbb12:arm64 (2022.0.0-2) ... 433s Selecting previously unselected package libtcl8.6:arm64. 433s Preparing to unpack .../105-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 433s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 433s Selecting previously unselected package libtheoradec1:arm64. 433s Preparing to unpack .../106-libtheoradec1_1.2.0~alpha1+dfsg-6_arm64.deb ... 433s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 434s Selecting previously unselected package libtheoraenc1:arm64. 434s Preparing to unpack .../107-libtheoraenc1_1.2.0~alpha1+dfsg-6_arm64.deb ... 434s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 434s Selecting previously unselected package libxft2:arm64. 434s Preparing to unpack .../108-libxft2_2.3.6-1build1_arm64.deb ... 434s Unpacking libxft2:arm64 (2.3.6-1build1) ... 434s Selecting previously unselected package x11-common. 434s Preparing to unpack .../109-x11-common_1%3a7.7+23ubuntu4_all.deb ... 434s Unpacking x11-common (1:7.7+23ubuntu4) ... 434s Selecting previously unselected package libxss1:arm64. 434s Preparing to unpack .../110-libxss1_1%3a1.2.3-1build3_arm64.deb ... 434s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 434s Selecting previously unselected package libtk8.6:arm64. 434s Preparing to unpack .../111-libtk8.6_8.6.16-1_arm64.deb ... 434s Unpacking libtk8.6:arm64 (8.6.16-1) ... 434s Selecting previously unselected package libvtk9.3:arm64. 434s Preparing to unpack .../112-libvtk9.3_9.3.0+dfsg1-4ubuntu1_arm64.deb ... 434s Unpacking libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 435s Selecting previously unselected package liblammps0t64:arm64. 435s Preparing to unpack .../113-liblammps0t64_20240207+dfsg-3build3_arm64.deb ... 435s Unpacking liblammps0t64:arm64 (20240207+dfsg-3build3) ... 435s Selecting previously unselected package openmpi-common. 435s Preparing to unpack .../114-openmpi-common_5.0.7-1_all.deb ... 435s Unpacking openmpi-common (5.0.7-1) ... 435s Selecting previously unselected package libnl-3-dev:arm64. 435s Preparing to unpack .../115-libnl-3-dev_3.7.0-2_arm64.deb ... 435s Unpacking libnl-3-dev:arm64 (3.7.0-2) ... 435s Selecting previously unselected package libnl-route-3-dev:arm64. 435s Preparing to unpack .../116-libnl-route-3-dev_3.7.0-2_arm64.deb ... 435s Unpacking libnl-route-3-dev:arm64 (3.7.0-2) ... 435s Selecting previously unselected package libibverbs-dev:arm64. 436s Preparing to unpack .../117-libibverbs-dev_56.0-4ubuntu1_arm64.deb ... 436s Unpacking libibverbs-dev:arm64 (56.0-4ubuntu1) ... 436s Selecting previously unselected package libnuma-dev:arm64. 436s Preparing to unpack .../118-libnuma-dev_2.0.18-1build1_arm64.deb ... 436s Unpacking libnuma-dev:arm64 (2.0.18-1build1) ... 436s Selecting previously unselected package libltdl7:arm64. 436s Preparing to unpack .../119-libltdl7_2.5.4-4_arm64.deb ... 436s Unpacking libltdl7:arm64 (2.5.4-4) ... 436s Selecting previously unselected package libltdl-dev:arm64. 436s Preparing to unpack .../120-libltdl-dev_2.5.4-4_arm64.deb ... 436s Unpacking libltdl-dev:arm64 (2.5.4-4) ... 436s Selecting previously unselected package libhwloc-dev:arm64. 436s Preparing to unpack .../121-libhwloc-dev_2.12.0-1_arm64.deb ... 436s Unpacking libhwloc-dev:arm64 (2.12.0-1) ... 436s Selecting previously unselected package zlib1g-dev:arm64. 436s Preparing to unpack .../122-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 436s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 436s Selecting previously unselected package libpmix-dev:arm64. 436s Preparing to unpack .../123-libpmix-dev_5.0.6-5_arm64.deb ... 436s Unpacking libpmix-dev:arm64 (5.0.6-5) ... 436s Selecting previously unselected package openmpi-bin. 436s Preparing to unpack .../124-openmpi-bin_5.0.7-1_arm64.deb ... 436s Unpacking openmpi-bin (5.0.7-1) ... 436s Selecting previously unselected package libopenmpi-dev:arm64. 436s Preparing to unpack .../125-libopenmpi-dev_5.0.7-1_arm64.deb ... 436s Unpacking libopenmpi-dev:arm64 (5.0.7-1) ... 436s Selecting previously unselected package mpi-default-dev. 436s Preparing to unpack .../126-mpi-default-dev_1.18_arm64.deb ... 436s Unpacking mpi-default-dev (1.18) ... 437s Selecting previously unselected package liblammps-dev. 437s Preparing to unpack .../127-liblammps-dev_20240207+dfsg-3build3_arm64.deb ... 437s 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Setting up mpi-default-bin (1.18) ... 438s Setting up liblammps0t64:arm64 (20240207+dfsg-3build3) ... 438s Setting up libopenmpi-dev:arm64 (5.0.7-1) ... 438s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 438s Setting up mpi-default-dev (1.18) ... 438s Setting up liblammps-dev (20240207+dfsg-3build3) ... 438s Setting up python3-lammps (20240207+dfsg-3build3) ... 438s Processing triggers for man-db (2.13.0-1) ... 439s Processing triggers for install-info (7.1.1-1) ... 439s Processing triggers for libc-bin (2.41-6ubuntu1) ... 464s autopkgtest [08:45:07]: test command1: cd python/examples; python3 demo.py 464s autopkgtest [08:45:07]: test command1: [----------------------- 465s LAMMPS (7 Feb 2024 - Update 1) 465s 465s Python output: 465s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 465s Temperature from compute = 0.7683848148006238 465s Energy from equal-style variable = -5.774392400140566 465s Velocity component from atom-style variable = -0.1669643026996425 465s Volume from get_thermo = 4738.213693437576 465s Natoms from get_natoms = 4000 465s Global coords from gather_atoms = 16.651271530416228 16.790010773016775 0.19047524160174037 465s Changed x[0][0] via scatter_atoms = 17.651271530416228 465s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 465s using 1 OpenMP thread(s) per MPI task 465s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 465s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 465s 1 by 1 by 1 MPI processor grid 465s Created 4000 atoms 465s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 465s create_atoms CPU = 0.001 seconds 465s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 465s Neighbor list info ... 465s update: every = 20 steps, delay = 0 steps, check = no 465s max neighbors/atom: 2000, page size: 100000 465s master list distance cutoff = 2.8 465s ghost atom cutoff = 2.8 465s binsize = 1.4, bins = 12 12 12 465s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 465s (1) pair lj/cut, perpetual 465s attributes: half, newton on 465s pair build: half/bin/atomonly/newton 465s stencil: half/bin/3d 465s bin: standard 465s Setting up Verlet run ... 465s Unit style : lj 465s Current step : 0 465s Time step : 0.005 465s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 465s Step Temp E_pair E_mol TotEng Press 465s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 465s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 465s Loop time of 0.239123 on 1 procs for 100 steps with 4000 atoms 465s 465s Performance: 180659.896 tau/day, 418.194 timesteps/s, 1.673 Matom-step/s 465s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 465s 465s MPI task timing breakdown: 465s Section | min time | avg time | max time |%varavg| %total 465s --------------------------------------------------------------- 465s Pair | 0.20158 | 0.20158 | 0.20158 | 0.0 | 84.30 465s Neigh | 0.027605 | 0.027605 | 0.027605 | 0.0 | 11.54 465s Comm | 0.0051211 | 0.0051211 | 0.0051211 | 0.0 | 2.14 465s Output | 3.4884e-05 | 3.4884e-05 | 3.4884e-05 | 0.0 | 0.01 465s Modify | 0.0040319 | 0.0040319 | 0.0040319 | 0.0 | 1.69 465s Other | | 0.0007494 | | | 0.31 465s 465s Nlocal: 4000 ave 4000 max 4000 min 465s Histogram: 1 0 0 0 0 0 0 0 0 0 465s Nghost: 5758 ave 5758 max 5758 min 465s Histogram: 1 0 0 0 0 0 0 0 0 0 465s Neighs: 150488 ave 150488 max 150488 min 465s Histogram: 1 0 0 0 0 0 0 0 0 0 465s 465s Total # of neighbors = 150488 465s Ave neighs/atom = 37.622 465s Neighbor list builds = 5 465s Dangerous builds not checked 465s Total wall time: 0:00:00 466s autopkgtest [08:45:09]: test command1: -----------------------] 466s command1 PASS 466s autopkgtest [08:45:09]: test command1: - - - - - - - - - - results - - - - - - - - - - 466s autopkgtest [08:45:09]: @@@@@@@@@@@@@@@@@@@@ summary 466s crack PASS 466s dipole PASS 466s ellipse PASS 466s flow PASS 466s friction PASS 466s hugo PASS 466s command1 PASS 485s nova [W] Using flock in prodstack6-arm64 485s Creating nova instance adt-questing-arm64-lammps-20250502-083723-juju-7f2275-prod-proposed-migration-environment-21-e51988ee-3ff4-432f-b31c-86a9599ab89c from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)... 485s nova [W] Timed out waiting for 66659aa2-5b1b-48e2-8bb7-97316947e2f3 to get deleted. 485s nova [W] Using flock in prodstack6-arm64 485s Creating nova instance adt-questing-arm64-lammps-20250502-083723-juju-7f2275-prod-proposed-migration-environment-21-e51988ee-3ff4-432f-b31c-86a9599ab89c from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)... 485s nova [W] Timed out waiting for 90b4addf-9664-4f8f-9dbe-200b5fdfd56b to get deleted.