0s autopkgtest [00:06:07]: starting date and time: 2025-05-02 00:06:07+0000 0s autopkgtest [00:06:07]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [00:06:07]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3ziu5fgs/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libzstd --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libzstd/1.5.7+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-22.secgroup --name adt-questing-arm64-lammps-20250502-000606-juju-7f2275-prod-proposed-migration-environment-2-d39758d3-b7f4-4319-8dc5-35044eed3fa8 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 158s autopkgtest [00:08:45]: testbed dpkg architecture: arm64 158s autopkgtest [00:08:45]: testbed apt version: 3.0.0 158s autopkgtest [00:08:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 158s autopkgtest [00:08:45]: testbed release detected to be: None 159s autopkgtest [00:08:46]: updating testbed package index (apt update) 160s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 160s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 160s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 160s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 160s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [179 kB] 160s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2255 kB] 160s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [57.4 kB] 160s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [196 kB] 160s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [567 kB] 160s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [3024 B] 161s Fetched 3367 kB in 1s (2907 kB/s) 162s Reading package lists... 162s autopkgtest [00:08:49]: upgrading testbed (apt dist-upgrade and autopurge) 162s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 163s Starting 2 pkgProblemResolver with broken count: 0 163s Done 164s Entering ResolveByKeep 165s 165s Calculating upgrade... 165s The following packages will be upgraded: 165s dpkg dpkg-dev libdpkg-perl libzstd1 zstd 165s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 165s Need to get 3549 kB of archives. 165s After this operation, 132 kB of additional disk space will be used. 165s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 dpkg arm64 1.22.18ubuntu3 [1288 kB] 166s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libzstd1 arm64 1.5.7+dfsg-1 [283 kB] 166s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 dpkg-dev all 1.22.18ubuntu3 [1089 kB] 166s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 libdpkg-perl all 1.22.18ubuntu3 [281 kB] 166s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 zstd arm64 1.5.7+dfsg-1 [607 kB] 167s Fetched 3549 kB in 1s (5048 kB/s) 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 167s Preparing to unpack .../dpkg_1.22.18ubuntu3_arm64.deb ... 167s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 167s Setting up dpkg (1.22.18ubuntu3) ... 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 168s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_arm64.deb ... 168s Unpacking libzstd1:arm64 (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 168s Setting up libzstd1:arm64 (1.5.7+dfsg-1) ... 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 168s Preparing to unpack .../dpkg-dev_1.22.18ubuntu3_all.deb ... 168s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 168s Preparing to unpack .../libdpkg-perl_1.22.18ubuntu3_all.deb ... 168s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 168s Preparing to unpack .../zstd_1.5.7+dfsg-1_arm64.deb ... 168s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 168s Setting up libdpkg-perl (1.22.18ubuntu3) ... 168s Setting up zstd (1.5.7+dfsg-1) ... 168s Setting up dpkg-dev (1.22.18ubuntu3) ... 168s Processing triggers for man-db (2.13.0-1) ... 170s Processing triggers for libc-bin (2.41-6ubuntu1) ... 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 172s Starting pkgProblemResolver with broken count: 0 172s Starting 2 pkgProblemResolver with broken count: 0 172s Done 172s Solving dependencies... 173s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s autopkgtest [00:09:00]: rebooting testbed after setup commands that affected boot 197s autopkgtest [00:09:24]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 200s autopkgtest [00:09:27]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 212s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 212s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 212s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 212s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 212s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 212s gpgv: Can't check signature: No public key 212s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 219s autopkgtest [00:09:46]: testing package lammps version 20240207+dfsg-3build3 220s autopkgtest [00:09:47]: build not needed 246s autopkgtest [00:10:13]: test crack: preparing testbed 247s Reading package lists... 247s Building dependency tree... 247s Reading state information... 247s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 248s The following NEW packages will be installed: 248s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 248s libaec0 libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdeflate0 248s libdouble-conversion3 libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 248s libfontconfig1 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 248s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 248s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 248s libibmad5 libibumad3 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26 248s libkim-api2 liblammps0t64 liblapack3 liblerc4 libllvm17t64 libmunge2 248s libnetcdf22 libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 248s libpmix2t64 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 248s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 248s libtk8.6 libucx0 libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 248s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 248s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 248s libxrender1 libxshmfence1 libxss1 libxxf86vm1 mesa-libgallium 248s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 248s x11-common 249s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 249s Need to get 127 MB of archives. 249s After this operation, 575 MB of additional disk space will be used. 249s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 249s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 249s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 249s Get:4 http://ftpmaster.internal/ubuntu questing/universe arm64 lammps-data all 20240207+dfsg-3build3 [9732 kB] 250s Get:5 http://ftpmaster.internal/ubuntu questing/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 250s Get:6 http://ftpmaster.internal/ubuntu questing/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 250s Get:7 http://ftpmaster.internal/ubuntu questing/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 251s Get:8 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 251s Get:9 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 251s Get:10 http://ftpmaster.internal/ubuntu questing/universe arm64 libamdhip64-5 arm64 5.7.1-5build1 [9707 kB] 251s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 251s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 251s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 251s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 251s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 251s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 251s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 251s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 251s Get:19 http://ftpmaster.internal/ubuntu questing/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 251s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 251s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 librdmacm1t64 arm64 56.0-4ubuntu1 [71.4 kB] 251s Get:22 http://ftpmaster.internal/ubuntu questing/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 251s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 251s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 251s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 251s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 251s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 251s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 251s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 251s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 251s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 251s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 251s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 mesa-libgallium arm64 25.0.3-1ubuntu2 [9455 kB] 251s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libgbm1 arm64 25.0.3-1ubuntu2 [33.7 kB] 251s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 251s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 251s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1-mesa-dri arm64 25.0.3-1ubuntu2 [35.4 kB] 251s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 251s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 251s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 251s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 libglx-mesa0 arm64 25.0.3-1ubuntu2 [151 kB] 251s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 251s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 251s Get:44 http://ftpmaster.internal/ubuntu questing/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 251s Get:45 http://ftpmaster.internal/ubuntu questing/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 251s Get:46 http://ftpmaster.internal/ubuntu questing/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 251s Get:47 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 252s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 252s Get:49 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 252s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 252s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 252s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 252s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 252s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 252s Get:55 http://ftpmaster.internal/ubuntu questing/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 252s Get:56 http://ftpmaster.internal/ubuntu questing/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 252s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 252s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 252s Get:59 http://ftpmaster.internal/ubuntu questing/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 252s Get:60 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 252s Get:61 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 252s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 libibumad3 arm64 56.0-4ubuntu1 [31.3 kB] 252s Get:63 http://ftpmaster.internal/ubuntu questing/main arm64 libibmad5 arm64 56.0-4ubuntu1 [44.1 kB] 252s Get:64 http://ftpmaster.internal/ubuntu questing/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 252s Get:65 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 252s Get:66 http://ftpmaster.internal/ubuntu questing/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 252s Get:67 http://ftpmaster.internal/ubuntu questing/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 252s Get:68 http://ftpmaster.internal/ubuntu questing/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 252s Get:69 http://ftpmaster.internal/ubuntu questing/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 252s Get:70 http://ftpmaster.internal/ubuntu questing/universe arm64 proj-data all 9.5.1-1 [7924 kB] 252s Get:71 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 252s Get:72 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 252s Get:73 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 252s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 252s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 252s Get:76 http://ftpmaster.internal/ubuntu questing/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 252s Get:77 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 252s Get:78 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 252s Get:79 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 252s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 252s Get:81 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 252s Get:82 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 252s Get:83 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 252s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 252s Get:85 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 252s Get:86 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 252s Get:87 http://ftpmaster.internal/ubuntu questing/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu1 [24.0 MB] 253s Get:88 http://ftpmaster.internal/ubuntu questing/universe arm64 liblammps0t64 arm64 20240207+dfsg-3build3 [6834 kB] 253s Get:89 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 253s Get:90 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 253s Get:91 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 253s Get:92 http://ftpmaster.internal/ubuntu questing/universe arm64 lammps arm64 20240207+dfsg-3build3 [15.1 kB] 254s Fetched 127 MB in 5s (27.4 MB/s) 254s Selecting previously unselected package fonts-dejavu-mono. 254s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 254s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 254s Unpacking fonts-dejavu-mono (2.37-8) ... 254s Selecting previously unselected package fonts-dejavu-core. 254s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 254s Unpacking fonts-dejavu-core (2.37-8) ... 254s Selecting previously unselected package fontconfig-config. 254s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 255s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 255s Selecting previously unselected package lammps-data. 255s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 255s Unpacking lammps-data (20240207+dfsg-3build3) ... 255s Selecting previously unselected package libaec0:arm64. 255s Preparing to unpack .../04-libaec0_1.1.3-1_arm64.deb ... 255s Unpacking libaec0:arm64 (1.1.3-1) ... 255s Selecting previously unselected package libllvm17t64:arm64. 255s Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 255s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 256s Selecting previously unselected package libamd-comgr2:arm64. 256s Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 256s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 256s Selecting previously unselected package libhsakmt1:arm64. 256s Preparing to unpack .../07-libhsakmt1_5.7.0-1build1_arm64.deb ... 256s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 256s Selecting previously unselected package libhsa-runtime64-1. 256s Preparing to unpack .../08-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 256s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 256s Selecting previously unselected package libamdhip64-5. 256s Preparing to unpack .../09-libamdhip64-5_5.7.1-5build1_arm64.deb ... 256s Unpacking libamdhip64-5 (5.7.1-5build1) ... 257s Selecting previously unselected package libblas3:arm64. 257s Preparing to unpack .../10-libblas3_3.12.1-2_arm64.deb ... 257s Unpacking libblas3:arm64 (3.12.1-2) ... 257s Selecting previously unselected package libfontconfig1:arm64. 257s Preparing to unpack .../11-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 257s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 257s Selecting previously unselected package libpixman-1-0:arm64. 257s Preparing to unpack .../12-libpixman-1-0_0.44.0-3_arm64.deb ... 257s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 257s Selecting previously unselected package libxcb-render0:arm64. 257s Preparing to unpack .../13-libxcb-render0_1.17.0-2_arm64.deb ... 257s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 257s Selecting previously unselected package libxcb-shm0:arm64. 257s Preparing to unpack .../14-libxcb-shm0_1.17.0-2_arm64.deb ... 257s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 257s Selecting previously unselected package libxrender1:arm64. 257s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 257s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 257s Selecting previously unselected package libcairo2:arm64. 257s Preparing to unpack .../16-libcairo2_1.18.4-1_arm64.deb ... 257s Unpacking libcairo2:arm64 (1.18.4-1) ... 257s Selecting previously unselected package libdeflate0:arm64. 257s Preparing to unpack .../17-libdeflate0_1.23-1_arm64.deb ... 257s Unpacking libdeflate0:arm64 (1.23-1) ... 257s Selecting previously unselected package libdouble-conversion3:arm64. 257s Preparing to unpack .../18-libdouble-conversion3_3.3.1-1_arm64.deb ... 257s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 257s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 257s Preparing to unpack .../19-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 257s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 257s Selecting previously unselected package librdmacm1t64:arm64. 257s Preparing to unpack .../20-librdmacm1t64_56.0-4ubuntu1_arm64.deb ... 257s Unpacking librdmacm1t64:arm64 (56.0-4ubuntu1) ... 257s Selecting previously unselected package libfabric1:arm64. 257s Preparing to unpack .../21-libfabric1_1.17.0-3.1_arm64.deb ... 257s Unpacking libfabric1:arm64 (1.17.0-3.1) ... 257s Selecting previously unselected package libgomp1:arm64. 257s Preparing to unpack .../22-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 257s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 257s Selecting previously unselected package libfftw3-double3:arm64. 257s Preparing to unpack .../23-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 257s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 257s Selecting previously unselected package libwayland-server0:arm64. 257s Preparing to unpack .../24-libwayland-server0_1.23.1-3_arm64.deb ... 257s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 257s Selecting previously unselected package libx11-xcb1:arm64. 257s Preparing to unpack .../25-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 257s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 257s Selecting previously unselected package libxcb-dri3-0:arm64. 257s Preparing to unpack .../26-libxcb-dri3-0_1.17.0-2_arm64.deb ... 257s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 257s Selecting previously unselected package libxcb-present0:arm64. 258s Preparing to unpack .../27-libxcb-present0_1.17.0-2_arm64.deb ... 258s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 258s Selecting previously unselected package libxcb-randr0:arm64. 258s Preparing to unpack .../28-libxcb-randr0_1.17.0-2_arm64.deb ... 258s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 258s Selecting previously unselected package libxcb-sync1:arm64. 258s Preparing to unpack .../29-libxcb-sync1_1.17.0-2_arm64.deb ... 258s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 258s Selecting previously unselected package libxcb-xfixes0:arm64. 258s Preparing to unpack .../30-libxcb-xfixes0_1.17.0-2_arm64.deb ... 258s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 258s Selecting previously unselected package libxshmfence1:arm64. 258s Preparing to unpack .../31-libxshmfence1_1.3-1build5_arm64.deb ... 258s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 258s Selecting previously unselected package mesa-libgallium:arm64. 258s Preparing to unpack .../32-mesa-libgallium_25.0.3-1ubuntu2_arm64.deb ... 258s Unpacking mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 258s Selecting previously unselected package libgbm1:arm64. 258s Preparing to unpack .../33-libgbm1_25.0.3-1ubuntu2_arm64.deb ... 258s Unpacking libgbm1:arm64 (25.0.3-1ubuntu2) ... 258s Selecting previously unselected package libgfortran5:arm64. 258s Preparing to unpack .../34-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 258s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 258s Selecting previously unselected package libvulkan1:arm64. 258s Preparing to unpack .../35-libvulkan1_1.4.304.0-1_arm64.deb ... 258s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 258s Selecting previously unselected package libgl1-mesa-dri:arm64. 258s Preparing to unpack .../36-libgl1-mesa-dri_25.0.3-1ubuntu2_arm64.deb ... 258s Unpacking libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 258s Selecting previously unselected package libglvnd0:arm64. 258s Preparing to unpack .../37-libglvnd0_1.7.0-1build1_arm64.deb ... 258s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 258s Selecting previously unselected package libxcb-glx0:arm64. 258s Preparing to unpack .../38-libxcb-glx0_1.17.0-2_arm64.deb ... 258s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 258s Selecting previously unselected package libxxf86vm1:arm64. 258s Preparing to unpack .../39-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 258s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 259s Selecting previously unselected package libglx-mesa0:arm64. 259s Preparing to unpack .../40-libglx-mesa0_25.0.3-1ubuntu2_arm64.deb ... 259s Unpacking libglx-mesa0:arm64 (25.0.3-1ubuntu2) ... 259s Selecting previously unselected package libglx0:arm64. 259s Preparing to unpack .../41-libglx0_1.7.0-1build1_arm64.deb ... 259s Unpacking libglx0:arm64 (1.7.0-1build1) ... 259s Selecting previously unselected package libgl1:arm64. 259s Preparing to unpack .../42-libgl1_1.7.0-1build1_arm64.deb ... 259s Unpacking libgl1:arm64 (1.7.0-1build1) ... 259s Selecting previously unselected package libgl2ps1.4. 259s Preparing to unpack .../43-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 259s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 259s Selecting previously unselected package libglew2.2:arm64. 259s Preparing to unpack .../44-libglew2.2_2.2.0-4build1_arm64.deb ... 259s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 259s Selecting previously unselected package libsz2:arm64. 259s Preparing to unpack .../45-libsz2_1.1.3-1_arm64.deb ... 259s Unpacking libsz2:arm64 (1.1.3-1) ... 259s Selecting previously unselected package libhdf5-310:arm64. 259s Preparing to unpack .../46-libhdf5-310_1.14.5+repack-3_arm64.deb ... 259s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 259s Selecting previously unselected package libhdf5-hl-310:arm64. 259s Preparing to unpack .../47-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 259s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 259s Selecting previously unselected package libhwloc15:arm64. 259s Preparing to unpack .../48-libhwloc15_2.12.0-1_arm64.deb ... 259s Unpacking libhwloc15:arm64 (2.12.0-1) ... 259s Selecting previously unselected package libjpeg-turbo8:arm64. 259s Preparing to unpack .../49-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 259s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 259s Selecting previously unselected package libjpeg8:arm64. 259s Preparing to unpack .../50-libjpeg8_8c-2ubuntu11_arm64.deb ... 259s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 259s Selecting previously unselected package libjsoncpp26:arm64. 259s Preparing to unpack .../51-libjsoncpp26_1.9.6-3_arm64.deb ... 259s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 259s Selecting previously unselected package libkim-api2:arm64. 259s Preparing to unpack .../52-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 259s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 259s Selecting previously unselected package liblapack3:arm64. 259s Preparing to unpack .../53-liblapack3_3.12.1-2_arm64.deb ... 259s Unpacking liblapack3:arm64 (3.12.1-2) ... 259s Selecting previously unselected package libnetcdf22:arm64. 260s Preparing to unpack .../54-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 260s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 260s Selecting previously unselected package libmunge2:arm64. 260s Preparing to unpack .../55-libmunge2_0.5.16-1_arm64.deb ... 260s Unpacking libmunge2:arm64 (0.5.16-1) ... 260s Selecting previously unselected package libpciaccess0:arm64. 260s Preparing to unpack .../56-libpciaccess0_0.17-3build1_arm64.deb ... 260s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 260s Selecting previously unselected package libxnvctrl0:arm64. 260s Preparing to unpack .../57-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 260s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 260s Selecting previously unselected package ocl-icd-libopencl1:arm64. 260s Preparing to unpack .../58-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 260s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 260s Selecting previously unselected package libhwloc-plugins:arm64. 260s Preparing to unpack .../59-libhwloc-plugins_2.12.0-1_arm64.deb ... 260s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 260s Selecting previously unselected package libpmix2t64:arm64. 260s Preparing to unpack .../60-libpmix2t64_5.0.6-5_arm64.deb ... 260s Unpacking libpmix2t64:arm64 (5.0.6-5) ... 260s Selecting previously unselected package libibumad3:arm64. 260s Preparing to unpack .../61-libibumad3_56.0-4ubuntu1_arm64.deb ... 260s Unpacking libibumad3:arm64 (56.0-4ubuntu1) ... 260s Selecting previously unselected package libibmad5:arm64. 260s Preparing to unpack .../62-libibmad5_56.0-4ubuntu1_arm64.deb ... 260s Unpacking libibmad5:arm64 (56.0-4ubuntu1) ... 260s Selecting previously unselected package libucx0:arm64. 260s Preparing to unpack .../63-libucx0_1.18.1+ds-2_arm64.deb ... 260s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 260s Selecting previously unselected package libopenmpi40:arm64. 260s Preparing to unpack .../64-libopenmpi40_5.0.7-1_arm64.deb ... 260s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 260s Selecting previously unselected package libpnetcdf6:arm64. 260s Preparing to unpack .../65-libpnetcdf6_1.14.0-2_arm64.deb ... 260s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 260s Selecting previously unselected package libvoro++1. 260s Preparing to unpack .../66-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 260s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 260s Selecting previously unselected package libogg0:arm64. 261s Preparing to unpack .../67-libogg0_1.3.5-3build1_arm64.deb ... 261s Unpacking libogg0:arm64 (1.3.5-3build1) ... 261s Selecting previously unselected package libopengl0:arm64. 261s Preparing to unpack .../68-libopengl0_1.7.0-1build1_arm64.deb ... 261s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 261s Selecting previously unselected package proj-data. 261s Preparing to unpack .../69-proj-data_9.5.1-1_all.deb ... 261s Unpacking proj-data (9.5.1-1) ... 261s Selecting previously unselected package libjbig0:arm64. 261s Preparing to unpack .../70-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 261s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 261s Selecting previously unselected package liblerc4:arm64. 261s Preparing to unpack .../71-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 261s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 261s Selecting previously unselected package libsharpyuv0:arm64. 261s Preparing to unpack .../72-libsharpyuv0_1.5.0-0.1_arm64.deb ... 261s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 261s Selecting previously unselected package libwebp7:arm64. 261s Preparing to unpack .../73-libwebp7_1.5.0-0.1_arm64.deb ... 261s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 261s Selecting previously unselected package libtiff6:arm64. 261s Preparing to unpack .../74-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 261s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 261s Selecting previously unselected package libproj25:arm64. 261s Preparing to unpack .../75-libproj25_9.5.1-1_arm64.deb ... 261s Unpacking libproj25:arm64 (9.5.1-1) ... 261s Selecting previously unselected package libtbbbind-2-5:arm64. 261s Preparing to unpack .../76-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 261s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 261s Selecting previously unselected package libtbbmalloc2:arm64. 261s Preparing to unpack .../77-libtbbmalloc2_2022.0.0-2_arm64.deb ... 261s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 261s Selecting previously unselected package libtbb12:arm64. 261s Preparing to unpack .../78-libtbb12_2022.0.0-2_arm64.deb ... 261s Unpacking libtbb12:arm64 (2022.0.0-2) ... 261s Selecting previously unselected package libtcl8.6:arm64. 261s Preparing to unpack .../79-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 261s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 261s Selecting previously unselected package libtheoradec1:arm64. 262s Preparing to unpack .../80-libtheoradec1_1.2.0~alpha1+dfsg-6_arm64.deb ... 262s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 262s Selecting previously unselected package libtheoraenc1:arm64. 262s Preparing to unpack .../81-libtheoraenc1_1.2.0~alpha1+dfsg-6_arm64.deb ... 262s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 262s Selecting previously unselected package libxft2:arm64. 262s Preparing to unpack .../82-libxft2_2.3.6-1build1_arm64.deb ... 262s Unpacking libxft2:arm64 (2.3.6-1build1) ... 262s Selecting previously unselected package x11-common. 262s Preparing to unpack .../83-x11-common_1%3a7.7+23ubuntu4_all.deb ... 262s Unpacking x11-common (1:7.7+23ubuntu4) ... 262s Selecting previously unselected package libxss1:arm64. 262s Preparing to unpack .../84-libxss1_1%3a1.2.3-1build3_arm64.deb ... 262s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 262s Selecting previously unselected package libtk8.6:arm64. 262s Preparing to unpack .../85-libtk8.6_8.6.16-1_arm64.deb ... 262s Unpacking libtk8.6:arm64 (8.6.16-1) ... 262s Selecting previously unselected package libvtk9.3:arm64. 262s Preparing to unpack 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(20240207+dfsg-3build3) ... 264s Setting up libxcb-dri3-0:arm64 (1.17.0-2) ... 264s Setting up libtbbmalloc2:arm64 (2022.0.0-2) ... 264s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 264s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 264s Setting up libwayland-server0:arm64 (1.23.1-3) ... 264s Setting up libx11-xcb1:arm64 (2:1.8.10-2) ... 264s Setting up libpciaccess0:arm64 (0.17-3build1) ... 264s Setting up libdouble-conversion3:arm64 (3.3.1-1) ... 264s Setting up libxcb-xfixes0:arm64 (1.17.0-2) ... 264s Setting up libogg0:arm64 (1.3.5-3build1) ... 264s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 264s Setting up proj-data (9.5.1-1) ... 264s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 264s Setting up lammps-data (20240207+dfsg-3build3) ... 264s Setting up libxcb-render0:arm64 (1.17.0-2) ... 264s Setting up libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 264s Setting up libglvnd0:arm64 (1.7.0-1build1) ... 264s Setting up libxcb-glx0:arm64 (1.17.0-2) ... 264s Setting up x11-common (1:7.7+23ubuntu4) ... 264s Setting up libibumad3:arm64 (56.0-4ubuntu1) ... 264s Setting up libdeflate0:arm64 (1.23-1) ... 264s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 264s Setting up libibmad5:arm64 (56.0-4ubuntu1) ... 264s Setting up libgomp1:arm64 (15-20250404-0ubuntu1) ... 264s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 264s Setting up libaec0:arm64 (1.1.3-1) ... 264s Setting up libopengl0:arm64 (1.7.0-1build1) ... 264s Setting up libxxf86vm1:arm64 (1:1.1.4-1build4) ... 264s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 264s Setting up libxcb-present0:arm64 (1.17.0-2) ... 264s Setting up libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 264s Setting up libblas3:arm64 (3.12.1-2) ... 264s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 264s Setting up libmunge2:arm64 (0.5.16-1) ... 264s Setting up libllvm17t64:arm64 (1:17.0.6-21) ... 264s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 264s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 264s Setting up fonts-dejavu-mono (2.37-8) ... 264s Setting up libhwloc15:arm64 (2.12.0-1) ... 264s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 264s Setting up fonts-dejavu-core (2.37-8) ... 264s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 264s Setting up libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 264s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 264s Setting up libvulkan1:arm64 (1.4.304.0-1) ... 264s Setting up libwebp7:arm64 (1.5.0-0.1) ... 264s Setting up ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 264s Setting up libxshmfence1:arm64 (1.3-1build5) ... 264s Setting up libxcb-randr0:arm64 (1.17.0-2) ... 264s Setting up openmpi-common (5.0.7-1) ... 264s Setting up librdmacm1t64:arm64 (56.0-4ubuntu1) ... 264s Setting up libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 264s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 264s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 264s Setting up libhsakmt1:arm64 (5.7.0-1build1) ... 264s Setting up libsz2:arm64 (1.1.3-1) ... 264s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 264s Setting up libfabric1:arm64 (1.17.0-3.1) ... 264s Setting up mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 264s Setting up liblapack3:arm64 (3.12.1-2) ... 264s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 264s Setting up libgbm1:arm64 (25.0.3-1ubuntu2) ... 264s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 264s Setting up libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 264s Setting up libkim-api2:arm64 (2.3.0-1ubuntu1) ... 264s Setting up libhwloc-plugins:arm64 (2.12.0-1) ... 264s Setting up libtbbbind-2-5:arm64 (2022.0.0-2) ... 264s Setting up libpmix2t64:arm64 (5.0.6-5) ... 264s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 264s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 264s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 264s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 264s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 264s Setting up libxft2:arm64 (2.3.6-1build1) ... 264s Setting up libglx-mesa0:arm64 (25.0.3-1ubuntu2) ... 264s Setting up libglx0:arm64 (1.7.0-1build1) ... 264s Setting up libproj25:arm64 (9.5.1-1) ... 264s Setting up libtk8.6:arm64 (8.6.16-1) ... 264s Setting up libnetcdf22:arm64 (1:4.9.3-1) ... 264s Setting up libtbb12:arm64 (2022.0.0-2) ... 264s Setting up libcairo2:arm64 (1.18.4-1) ... 264s Setting up libgl1:arm64 (1.7.0-1build1) ... 264s Setting up libamdhip64-5 (5.7.1-5build1) ... 264s Setting up libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 264s Setting up libglew2.2:arm64 (2.2.0-4build1) ... 264s Setting up libucx0:arm64 (1.18.1+ds-2) ... 264s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 264s Setting up libopenmpi40:arm64 (5.0.7-1) ... 264s Setting up libpnetcdf6:arm64 (1.14.0-2) ... 264s Setting up libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 264s Setting up openmpi-bin (5.0.7-1) ... 264s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 264s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 264s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 264s Setting up mpi-default-bin (1.18) ... 264s Setting up liblammps0t64:arm64 (20240207+dfsg-3build3) ... 264s Setting up lammps (20240207+dfsg-3build3) ... 264s Processing triggers for man-db (2.13.0-1) ... 266s Processing triggers for libc-bin (2.41-6ubuntu1) ... 267s autopkgtest [00:10:34]: test crack: [----------------------- 268s LAMMPS (7 Feb 2024 - Update 1) 268s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 268s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 268s using 1 OpenMP thread(s) per MPI task 268s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 268s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 268s 2 by 1 by 1 MPI processor grid 268s Created 8141 atoms 268s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 268s create_atoms CPU = 0.001 seconds 268s 302 atoms in group lower 268s 302 atoms in group upper 268s 604 atoms in group boundary 268s 7537 atoms in group mobile 268s 841 atoms in group leftupper 268s 841 atoms in group leftlower 268s Setting atom values ... 268s 841 settings made for type 268s Setting atom values ... 268s 841 settings made for type 268s Setting atom values ... 268s 302 settings made for type 268s Setting atom values ... 268s 302 settings made for type 268s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 268s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 268s Neighbor list info ... 268s update: every = 1 steps, delay = 5 steps, check = yes 268s max neighbors/atom: 2000, page size: 100000 268s master list distance cutoff = 2.8 268s ghost atom cutoff = 2.8 268s binsize = 1.4, bins = 80 56 1 268s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 268s (1) pair lj/cut, perpetual 268s attributes: half, newton on 268s pair build: half/bin/atomonly/newton 268s stencil: half/bin/2d 268s bin: standard 268s Setting up Verlet run ... 268s Unit style : lj 268s Current step : 0 268s Time step : 0.003 268s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 268s Step Temp E_pair E_mol TotEng Press Volume 268s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 268s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 268s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 268s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 268s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 268s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 269s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 269s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 269s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 269s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 269s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 269s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 269s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 269s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 269s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 270s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 270s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 270s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 270s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 270s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 270s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 270s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 270s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 270s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 271s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 271s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 271s Loop time of 2.92581 on 2 procs for 5000 steps with 8141 atoms 271s 271s Performance: 442954.925 tau/day, 1708.931 timesteps/s, 13.912 Matom-step/s 271s 96.8% CPU use with 2 MPI tasks x 1 OpenMP threads 271s 271s MPI task timing breakdown: 271s Section | min time | avg time | max time |%varavg| %total 271s --------------------------------------------------------------- 271s Pair | 2.2225 | 2.2263 | 2.2302 | 0.3 | 76.09 271s Neigh | 0.11569 | 0.11698 | 0.11828 | 0.4 | 4.00 271s Comm | 0.24674 | 0.25435 | 0.26197 | 1.5 | 8.69 271s Output | 0.0010527 | 0.0020969 | 0.0031411 | 2.3 | 0.07 271s Modify | 0.22226 | 0.22283 | 0.2234 | 0.1 | 7.62 271s Other | | 0.1032 | | | 3.53 271s 271s Nlocal: 4070.5 ave 4085 max 4056 min 271s Histogram: 1 0 0 0 0 0 0 0 0 1 271s Nghost: 207 ave 208 max 206 min 271s Histogram: 1 0 0 0 0 0 0 0 0 1 271s Neighs: 35700 ave 35927 max 35473 min 271s Histogram: 1 0 0 0 0 0 0 0 0 1 271s 271s Total # of neighbors = 71400 271s Ave neighs/atom = 8.7704213 271s Neighbor list builds = 106 271s Dangerous builds = 0 271s Total wall time: 0:00:02 271s LAMMPS (7 Feb 2024 - Update 1) 276s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 276s using 1 OpenMP thread(s) per MPI task 276s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 276s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 276s 1 by 1 by 1 MPI processor grid 276s Created 8141 atoms 276s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 276s create_atoms CPU = 0.002 seconds 276s 302 atoms in group lower 276s 302 atoms in group upper 276s 604 atoms in group boundary 276s 7537 atoms in group mobile 276s 841 atoms in group leftupper 276s 841 atoms in group leftlower 276s Setting atom values ... 276s 841 settings made for type 276s Setting atom values ... 276s 841 settings made for type 276s Setting atom values ... 276s 302 settings made for type 276s Setting atom values ... 276s 302 settings made for type 276s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 276s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 276s Neighbor list info ... 276s update: every = 1 steps, delay = 5 steps, check = yes 276s max neighbors/atom: 2000, page size: 100000 276s master list distance cutoff = 2.8 276s ghost atom cutoff = 2.8 276s binsize = 1.4, bins = 80 56 1 276s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 276s (1) pair lj/cut, perpetual 276s attributes: half, newton on 276s pair build: half/bin/atomonly/newton 276s stencil: half/bin/2d 276s bin: standard 276s Setting up Verlet run ... 276s Unit style : lj 276s Current step : 0 276s Time step : 0.003 276s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 276s Step Temp E_pair E_mol TotEng Press Volume 276s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 276s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 276s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 276s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 276s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 276s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 276s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 276s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 276s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 276s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 276s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 276s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 276s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 276s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 276s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 276s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 276s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 276s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 276s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 276s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 276s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 276s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 276s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 276s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 276s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 276s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 276s Loop time of 5.32904 on 1 procs for 5000 steps with 8141 atoms 276s 276s Performance: 243195.553 tau/day, 938.254 timesteps/s, 7.638 Matom-step/s 276s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 276s 276s MPI task timing breakdown: 276s Section | min time | avg time | max time |%varavg| %total 276s --------------------------------------------------------------- 276s Pair | 4.495 | 4.495 | 4.495 | 0.0 | 84.35 276s Neigh | 0.20714 | 0.20714 | 0.20714 | 0.0 | 3.89 276s Comm | 0.0048901 | 0.0048901 | 0.0048901 | 0.0 | 0.09 276s Output | 0.0015131 | 0.0015131 | 0.0015131 | 0.0 | 0.03 276s Modify | 0.4616 | 0.4616 | 0.4616 | 0.0 | 8.66 276s Other | | 0.1589 | | | 2.98 276s 276s Nlocal: 8141 ave 8141 max 8141 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s Nghost: 0 ave 0 max 0 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s Neighs: 71389 ave 71389 max 71389 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s 276s Total # of neighbors = 71389 276s Ave neighs/atom = 8.7690701 276s Neighbor list builds = 100 276s Dangerous builds = 0 276s Total wall time: 0:00:05 276s run: OK 277s autopkgtest [00:10:44]: test crack: -----------------------] 277s autopkgtest [00:10:44]: test crack: - - - - - - - - - - results - - - - - - - - - - 277s crack PASS 278s autopkgtest [00:10:45]: test dipole: preparing testbed 278s Reading package lists... 278s Building dependency tree... 278s Reading state information... 279s Starting pkgProblemResolver with broken count: 0 279s Starting 2 pkgProblemResolver with broken count: 0 279s Done 280s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 280s autopkgtest [00:10:47]: test dipole: [----------------------- 281s LAMMPS (7 Feb 2024 - Update 1) 281s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 281s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 281s using 1 OpenMP thread(s) per MPI task 281s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 281s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 281s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 281s 2 by 1 by 1 MPI processor grid 281s Created 200 atoms 281s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 281s create_atoms CPU = 0.001 seconds 281s Setting atom values ... 281s 200 settings made for mass 281s Setting atom values ... 281s 200 settings made for dipole/random 281s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 281s Neighbor list info ... 281s update: every = 1 steps, delay = 0 steps, check = yes 281s max neighbors/atom: 2000, page size: 100000 281s master list distance cutoff = 2.8 281s ghost atom cutoff = 2.8 281s binsize = 1.4, bins = 13 13 2 281s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 281s (1) pair lj/cut/dipole/cut, perpetual 281s attributes: half, newton on 281s pair build: half/bin/atomonly/newton 281s stencil: half/bin/2d 281s bin: standard 281s Setting up Verlet run ... 281s Unit style : lj 281s Current step : 0 281s Time step : 0.005 281s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 281s Step Temp E_pair c_erot TotEng Press 281s 0 0 -2.0965715 0 -2.0965715 -2.4759659 281s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 281s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 281s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 281s 2000 0.44906518 -2.8037483 0.24422519 -2.3569284 0.15010152 281s 2500 0.46056435 -2.8144144 0.25015831 -2.3561529 -0.38358808 281s 3000 0.4348415 -2.7856362 0.24988108 -2.3529689 0.086257242 281s 3500 0.41528069 -2.7415634 0.22418981 -2.3283591 0.13066802 281s 4000 0.40006774 -2.7153553 0.22170678 -2.3172879 -0.17425321 281s 4500 0.45764976 -2.7751555 0.2288386 -2.319794 -0.22228559 281s 5000 0.45119236 -2.7437941 0.21642728 -2.2948577 0.086840364 281s 5500 0.41805158 -2.7191643 0.2405108 -2.303203 -0.20373032 281s 6000 0.41353959 -2.73374 0.26555768 -2.3222681 0.013197521 281s 6500 0.46952638 -2.7206692 0.19356607 -2.2534905 -0.32099423 281s 7000 0.4308564 -2.6963241 0.21298331 -2.2676219 0.11638995 281s 7500 0.44328381 -2.767933 0.28845767 -2.3268656 -0.055714929 281s 8000 0.48149201 -2.7648936 0.25607634 -2.2858091 -0.24833472 281s 8500 0.44641155 -2.735761 0.26866772 -2.2915815 -0.11006786 281s 9000 0.45443104 -2.70388 0.2307522 -2.2517211 -0.077100374 281s 9500 0.42544663 -2.6959692 0.25023057 -2.2726498 -0.04183171 281s 10000 0.42622279 -2.6434464 0.2125908 -2.2193547 0.052056849 281s Loop time of 0.47916 on 2 procs for 10000 steps with 200 atoms 281s 281s Performance: 9015774.252 tau/day, 20869.848 timesteps/s, 4.174 Matom-step/s 281s 99.1% CPU use with 2 MPI tasks x 1 OpenMP threads 281s 281s MPI task timing breakdown: 281s Section | min time | avg time | max time |%varavg| %total 281s --------------------------------------------------------------- 281s Pair | 0.26345 | 0.29508 | 0.32671 | 5.8 | 61.58 281s Neigh | 0.01455 | 0.015813 | 0.017077 | 1.0 | 3.30 281s Comm | 0.089007 | 0.12066 | 0.1523 | 9.1 | 25.18 281s Output | 0.0003791 | 0.0013303 | 0.0022814 | 2.6 | 0.28 281s Modify | 0.025358 | 0.02674 | 0.028122 | 0.8 | 5.58 281s Other | | 0.01954 | | | 4.08 281s 281s Nlocal: 100 ave 104 max 96 min 281s Histogram: 1 0 0 0 0 0 0 0 0 1 281s Nghost: 123.5 ave 124 max 123 min 281s Histogram: 1 0 0 0 0 0 0 0 0 1 281s Neighs: 820 ave 885 max 755 min 281s Histogram: 1 0 0 0 0 0 0 0 0 1 281s 281s Total # of neighbors = 1640 281s Ave neighs/atom = 8.2 281s Neighbor list builds = 697 281s Dangerous builds = 0 281s Total wall time: 0:00:00 281s LAMMPS (7 Feb 2024 - Update 1) 282s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 282s using 1 OpenMP thread(s) per MPI task 282s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 282s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 282s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 282s 1 by 1 by 1 MPI processor grid 282s Created 200 atoms 282s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 282s create_atoms CPU = 0.001 seconds 282s Setting atom values ... 282s 200 settings made for mass 282s Setting atom values ... 282s 200 settings made for dipole/random 282s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 282s Neighbor list info ... 282s update: every = 1 steps, delay = 0 steps, check = yes 282s max neighbors/atom: 2000, page size: 100000 282s master list distance cutoff = 2.8 282s ghost atom cutoff = 2.8 282s binsize = 1.4, bins = 13 13 2 282s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 282s (1) pair lj/cut/dipole/cut, perpetual 282s attributes: half, newton on 282s pair build: half/bin/atomonly/newton 282s stencil: half/bin/2d 282s bin: standard 282s Setting up Verlet run ... 282s Unit style : lj 282s Current step : 0 282s Time step : 0.005 282s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 282s Step Temp E_pair c_erot TotEng Press 282s 0 0 -2.0965715 0 -2.0965715 -2.4759659 282s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 282s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 282s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 282s 2000 0.44906137 -2.8037446 0.24422529 -2.3569285 0.15012276 282s 2500 0.46036094 -2.8144628 0.25011505 -2.3564037 -0.37955581 282s 3000 0.44916796 -2.7986738 0.24197589 -2.3517517 -0.23759595 282s 3500 0.43708892 -2.7404913 0.20046667 -2.3055878 -0.068108938 282s 4000 0.4277424 -2.7516171 0.22285533 -2.3260134 -0.38856067 282s 4500 0.41051154 -2.7253155 0.22244047 -2.3168566 -0.56435269 282s 5000 0.3930005 -2.7393881 0.26645487 -2.3483526 -0.14501759 282s 5500 0.48374634 -2.7361451 0.17785357 -2.2548175 -0.23588662 282s 6000 0.44341889 -2.7200909 0.2049925 -2.2788891 0.30169398 282s 6500 0.45604374 -2.7449044 0.23816385 -2.2911408 -0.02615159 282s 7000 0.41178901 -2.7023053 0.24691126 -2.2925752 -0.089298567 282s 7500 0.49214202 -2.7631906 0.22991178 -2.2735093 -0.21670068 282s 8000 0.51272822 -2.7861027 0.23867667 -2.2759381 -0.054576195 282s 8500 0.3942697 -2.6555823 0.23621182 -2.263284 -0.15323416 282s 9000 0.44393797 -2.7051517 0.23305036 -2.2634334 -0.32144821 282s 9500 0.49155958 -2.757627 0.23397146 -2.2685252 0.083278026 282s 10000 0.49343489 -2.7193593 0.19771681 -2.2283916 -0.10873755 282s Loop time of 0.717132 on 1 procs for 10000 steps with 200 atoms 282s 282s Performance: 6023998.909 tau/day, 13944.442 timesteps/s, 2.789 Matom-step/s 282s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 282s 282s MPI task timing breakdown: 282s Section | min time | avg time | max time |%varavg| %total 282s --------------------------------------------------------------- 282s Pair | 0.58219 | 0.58219 | 0.58219 | 0.0 | 81.18 282s Neigh | 0.03176 | 0.03176 | 0.03176 | 0.0 | 4.43 282s Comm | 0.037329 | 0.037329 | 0.037329 | 0.0 | 5.21 282s Output | 0.00040566 | 0.00040566 | 0.00040566 | 0.0 | 0.06 282s Modify | 0.050177 | 0.050177 | 0.050177 | 0.0 | 7.00 282s Other | | 0.01527 | | | 2.13 282s 282s Nlocal: 200 ave 200 max 200 min 282s Histogram: 1 0 0 0 0 0 0 0 0 0 282s Nghost: 155 ave 155 max 155 min 282s Histogram: 1 0 0 0 0 0 0 0 0 0 282s Neighs: 1664 ave 1664 max 1664 min 282s Histogram: 1 0 0 0 0 0 0 0 0 0 282s 282s Total # of neighbors = 1664 282s Ave neighs/atom = 8.32 282s Neighbor list builds = 697 282s Dangerous builds = 0 282s Total wall time: 0:00:00 282s run: OK 283s autopkgtest [00:10:50]: test dipole: -----------------------] 283s dipole PASS 283s autopkgtest [00:10:50]: test dipole: - - - - - - - - - - results - - - - - - - - - - 284s autopkgtest [00:10:51]: test ellipse: preparing testbed 284s Reading package lists... 284s Building dependency tree... 284s Reading state information... 285s Starting pkgProblemResolver with broken count: 0 285s Starting 2 pkgProblemResolver with broken count: 0 285s Done 286s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 287s autopkgtest [00:10:54]: test ellipse: [----------------------- 287s LAMMPS (7 Feb 2024 - Update 1) 287s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 287s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 287s using 1 OpenMP thread(s) per MPI task 287s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 287s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 287s 2 by 1 by 1 MPI processor grid 287s Created 400 atoms 287s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 287s create_atoms CPU = 0.001 seconds 287s Setting atom values ... 287s 29 settings made for type/fraction 287s Setting atom values ... 287s 371 settings made for mass 287s Setting atom values ... 287s 29 settings made for mass 287s Setting atom values ... 287s 371 settings made for shape 287s Setting atom values ... 287s 29 settings made for shape 287s Setting atom values ... 287s 400 settings made for quat/random 287s 371 atoms in group spheroid 287s 287s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 287s 287s Your simulation uses code contributions which should be cited: 287s - pair gayberne command: doi:10.1063/1.3058435 287s The log file lists these citations in BibTeX format. 287s 287s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 287s 287s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 287s Neighbor list info ... 287s update: every = 1 steps, delay = 0 steps, check = yes 287s max neighbors/atom: 2000, page size: 100000 287s master list distance cutoff = 4.8 287s ghost atom cutoff = 4.8 287s binsize = 2.4, bins = 59 59 3 287s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 287s (1) pair gayberne, perpetual 287s attributes: half, newton on 287s pair build: half/bin/atomonly/newton 287s stencil: half/bin/2d 287s bin: standard 287s Setting up Verlet run ... 287s Unit style : lj 287s Current step : 0 287s Time step : 0.002 287s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 287s Step c_rot E_pair TotEng Press Volume 287s 0 2.3158404 0 2.394 0.04788 20000 287s 100 1.7101139 0 1.7678302 0.034413192 20548.286 287s 200 2.3115592 0 2.3895743 0.04649702 20556.796 287s 300 1.831333 0 1.8931405 0.041256922 18354.646 287s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 287s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 287s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 287s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 287s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 287s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 287s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 287s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 287s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 287s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 287s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 287s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 287s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 287s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 287s 1800 2.0033499 -3.7524192 -1.7481879 0.76104974 973.71402 287s 1900 2.0083456 -3.7603247 -1.7442111 0.74095065 988.03964 287s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 287s Loop time of 0.372214 on 2 procs for 2000 steps with 400 atoms 287s 287s Performance: 928497.915 tau/day, 5373.252 timesteps/s, 2.149 Matom-step/s 287s 96.3% CPU use with 2 MPI tasks x 1 OpenMP threads 287s 287s MPI task timing breakdown: 287s Section | min time | avg time | max time |%varavg| %total 287s --------------------------------------------------------------- 287s Pair | 0.17586 | 0.19553 | 0.2152 | 4.4 | 52.53 287s Neigh | 0.010294 | 0.010942 | 0.01159 | 0.6 | 2.94 287s Comm | 0.03981 | 0.058653 | 0.077496 | 7.8 | 15.76 287s Output | 0.016923 | 0.017062 | 0.017202 | 0.1 | 4.58 287s Modify | 0.079485 | 0.080779 | 0.082072 | 0.5 | 21.70 287s Other | | 0.009246 | | | 2.48 287s 287s Nlocal: 200 ave 211 max 189 min 287s Histogram: 1 0 0 0 0 0 0 0 0 1 287s Nghost: 215 ave 217 max 213 min 287s Histogram: 1 0 0 0 0 0 0 0 0 1 287s Neighs: 1561 ave 1651 max 1471 min 287s Histogram: 1 0 0 0 0 0 0 0 0 1 287s 287s Total # of neighbors = 3122 287s Ave neighs/atom = 7.805 287s Neighbor list builds = 346 287s Dangerous builds = 0 287s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 287s Setting up Verlet run ... 287s Unit style : lj 287s Current step : 2000 287s Time step : 0.002 287s Per MPI rank memory allocation (min/avg/max) = 6.899 | 6.899 | 6.899 Mbytes 287s Step c_rot E_pair TotEng Press Volume 287s 2000 1.952518 -3.6531717 -1.7078819 0.50248125 989.96894 288s 2100 1.9040485 -3.6005672 -1.6802923 0.39862439 989.96894 288s 2200 1.8951971 -3.5921565 -1.6947174 1.0260215 989.96894 288s 2300 2.0029242 -3.7081932 -1.6838651 0.66970247 989.96894 288s 2400 2.0271892 -3.7314226 -1.7100026 0.89700311 989.96894 288s 2500 2.0661249 -3.7753498 -1.7024133 0.57670823 989.96894 288s 2600 2.0610735 -3.7707906 -1.7111976 0.90913324 989.96894 288s 2700 2.0505182 -3.759913 -1.7337449 0.65661806 989.96894 288s 2800 2.1106611 -3.8219493 -1.7370736 0.55275858 989.96894 288s 2900 2.0346954 -3.7427335 -1.7135138 0.69791414 989.96894 288s 3000 2.0331857 -3.7398391 -1.751581 0.051416398 989.96894 288s 3100 1.9983775 -3.7074162 -1.7156494 0.75643227 989.96894 288s 3200 2.1297315 -3.8450391 -1.7173438 1.0595574 989.96894 288s 3300 2.0798058 -3.793496 -1.6857257 1.1572151 989.96894 288s 3400 2.1441179 -3.8596018 -1.7011723 0.61261295 989.96894 288s 3500 2.1035108 -3.8190033 -1.6997662 0.99653756 989.96894 288s 3600 2.0856923 -3.7988484 -1.7184312 1.1264485 989.96894 288s 3700 2.1029212 -3.8148833 -1.7096948 0.96828131 989.96894 288s 3800 2.0253659 -3.7349822 -1.7382292 0.56254829 989.96894 288s 3900 1.9686055 -3.6775217 -1.7283017 1.2472863 989.96894 288s 4000 2.0951026 -3.8095594 -1.6876041 0.79798093 989.96894 288s Loop time of 0.362581 on 2 procs for 2000 steps with 400 atoms 288s 288s Performance: 953166.054 tau/day, 5516.007 timesteps/s, 2.206 Matom-step/s 288s 98.5% CPU use with 2 MPI tasks x 1 OpenMP threads 288s 288s MPI task timing breakdown: 288s Section | min time | avg time | max time |%varavg| %total 288s --------------------------------------------------------------- 288s Pair | 0.24833 | 0.24908 | 0.24982 | 0.1 | 68.70 288s Neigh | 0.002697 | 0.0030563 | 0.0034156 | 0.6 | 0.84 288s Comm | 0.040116 | 0.041304 | 0.042492 | 0.6 | 11.39 288s Output | 0.017138 | 0.017288 | 0.017438 | 0.1 | 4.77 288s Modify | 0.037811 | 0.042238 | 0.046666 | 2.2 | 11.65 288s Other | | 0.009618 | | | 2.65 288s 288s Nlocal: 200 ave 227 max 173 min 288s Histogram: 1 0 0 0 0 0 0 0 0 1 288s Nghost: 211 ave 219 max 203 min 288s Histogram: 1 0 0 0 0 0 0 0 0 1 288s Neighs: 1650.5 ave 1950 max 1351 min 288s Histogram: 1 0 0 0 0 0 0 0 0 1 288s 288s Total # of neighbors = 3301 288s Ave neighs/atom = 8.2525 288s Neighbor list builds = 49 288s Dangerous builds = 0 288s Total wall time: 0:00:00 288s LAMMPS (7 Feb 2024 - Update 1) 289s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 289s using 1 OpenMP thread(s) per MPI task 289s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 289s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 289s 1 by 1 by 1 MPI processor grid 289s Created 400 atoms 289s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 289s create_atoms CPU = 0.000 seconds 289s Setting atom values ... 289s 29 settings made for type/fraction 289s Setting atom values ... 289s 371 settings made for mass 289s Setting atom values ... 289s 29 settings made for mass 289s Setting atom values ... 289s 371 settings made for shape 289s Setting atom values ... 289s 29 settings made for shape 289s Setting atom values ... 289s 400 settings made for quat/random 289s 371 atoms in group spheroid 289s 289s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 289s 289s Your simulation uses code contributions which should be cited: 289s - pair gayberne command: doi:10.1063/1.3058435 289s The log file lists these citations in BibTeX format. 289s 289s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 289s 289s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 289s Neighbor list info ... 289s update: every = 1 steps, delay = 0 steps, check = yes 289s max neighbors/atom: 2000, page size: 100000 289s master list distance cutoff = 4.8 289s ghost atom cutoff = 4.8 289s binsize = 2.4, bins = 59 59 3 289s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 289s (1) pair gayberne, perpetual 289s attributes: half, newton on 289s pair build: half/bin/atomonly/newton 289s stencil: half/bin/2d 289s bin: standard 289s Setting up Verlet run ... 289s Unit style : lj 289s Current step : 0 289s Time step : 0.002 289s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 289s Step c_rot E_pair TotEng Press Volume 289s 0 2.3158404 0 2.394 0.04788 20000 289s 100 1.7101139 0 1.7678302 0.034413192 20548.286 289s 200 2.3115592 0 2.3895743 0.04649702 20556.796 289s 300 1.831333 0 1.8931405 0.041256922 18354.646 289s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 289s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 289s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 289s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 289s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 289s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 289s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 289s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 289s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 289s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 289s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 289s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 289s 1600 2.1414975 -3.9792878 -1.8690882 0.79530679 899.00645 289s 1700 1.9971755 -3.8166601 -1.8380659 0.41343092 945.60821 289s 1800 2.0033499 -3.7524192 -1.7481879 0.76104975 973.71402 289s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 289s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 289s Loop time of 0.578977 on 1 procs for 2000 steps with 400 atoms 289s 289s Performance: 596915.101 tau/day, 3454.370 timesteps/s, 1.382 Matom-step/s 289s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads 289s 289s MPI task timing breakdown: 289s Section | min time | avg time | max time |%varavg| %total 289s --------------------------------------------------------------- 289s Pair | 0.38613 | 0.38613 | 0.38613 | 0.0 | 66.69 289s Neigh | 0.020234 | 0.020234 | 0.020234 | 0.0 | 3.49 289s Comm | 0.010952 | 0.010952 | 0.010952 | 0.0 | 1.89 289s Output | 0.019709 | 0.019709 | 0.019709 | 0.0 | 3.40 289s Modify | 0.13611 | 0.13611 | 0.13611 | 0.0 | 23.51 289s Other | | 0.005848 | | | 1.01 289s 289s Nlocal: 400 ave 400 max 400 min 289s Histogram: 1 0 0 0 0 0 0 0 0 0 289s Nghost: 276 ave 276 max 276 min 289s Histogram: 1 0 0 0 0 0 0 0 0 0 289s Neighs: 3122 ave 3122 max 3122 min 289s Histogram: 1 0 0 0 0 0 0 0 0 0 289s 289s Total # of neighbors = 3122 289s Ave neighs/atom = 7.805 289s Neighbor list builds = 346 289s Dangerous builds = 0 289s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 289s Setting up Verlet run ... 289s Unit style : lj 289s Current step : 2000 289s Time step : 0.002 289s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 289s Step c_rot E_pair TotEng Press Volume 289s 2000 1.952518 -3.6531717 -1.7078819 0.50248128 989.96894 289s 2100 1.9040485 -3.6005672 -1.6802923 0.39862438 989.96894 289s 2200 1.8951971 -3.5921566 -1.6947174 1.0260215 989.96894 289s 2300 2.0029244 -3.7081934 -1.6838652 0.66970135 989.96894 289s 2400 2.0271885 -3.731422 -1.7100022 0.89700608 989.96894 289s 2500 2.066122 -3.7753468 -1.7024127 0.57671483 989.96894 289s 2600 2.0610701 -3.7707871 -1.7111979 0.90915268 989.96894 289s 2700 2.0505226 -3.7599192 -1.7337496 0.65661546 989.96894 289s 2800 2.1106391 -3.8219307 -1.7370733 0.55280503 989.96894 289s 2900 2.0347598 -3.7428025 -1.7135189 0.69781833 989.96894 289s 3000 2.0330208 -3.7396616 -1.7515118 0.052338568 989.96894 289s 3100 1.9979524 -3.7070895 -1.715955 0.75689837 989.96894 289s 3200 2.1279004 -3.8431144 -1.7172074 1.0681978 989.96894 289s 3300 2.0795122 -3.7933999 -1.6843677 1.160141 989.96894 289s 3400 2.1458506 -3.8618217 -1.7011471 0.60302387 989.96894 289s 3500 2.0922186 -3.8066733 -1.7042032 1.020929 989.96894 289s 3600 2.0923687 -3.8049721 -1.7151823 0.97720853 989.96894 289s 3700 2.1082732 -3.8201734 -1.6945215 0.97495003 989.96894 289s 3800 2.0883146 -3.8011237 -1.6897726 0.59373082 989.96894 289s 3900 2.1821449 -3.8971145 -1.6976484 0.53241288 989.96894 289s 4000 2.103916 -3.8154046 -1.6865256 0.96939819 989.96894 289s Loop time of 0.629517 on 1 procs for 2000 steps with 400 atoms 289s 289s Performance: 548992.651 tau/day, 3177.041 timesteps/s, 1.271 Matom-step/s 289s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 289s 289s MPI task timing breakdown: 289s Section | min time | avg time | max time |%varavg| %total 289s --------------------------------------------------------------- 289s Pair | 0.50262 | 0.50262 | 0.50262 | 0.0 | 79.84 289s Neigh | 0.0061577 | 0.0061577 | 0.0061577 | 0.0 | 0.98 289s Comm | 0.012216 | 0.012216 | 0.012216 | 0.0 | 1.94 289s Output | 0.019944 | 0.019944 | 0.019944 | 0.0 | 3.17 289s Modify | 0.083991 | 0.083991 | 0.083991 | 0.0 | 13.34 289s Other | | 0.004587 | | | 0.73 289s 289s Nlocal: 400 ave 400 max 400 min 289s Histogram: 1 0 0 0 0 0 0 0 0 0 289s Nghost: 284 ave 284 max 284 min 289s Histogram: 1 0 0 0 0 0 0 0 0 0 289s Neighs: 3287 ave 3287 max 3287 min 289s Histogram: 1 0 0 0 0 0 0 0 0 0 289s 289s Total # of neighbors = 3287 289s Ave neighs/atom = 8.2175 289s Neighbor list builds = 51 289s Dangerous builds = 0 289s Total wall time: 0:00:01 289s LAMMPS (7 Feb 2024 - Update 1) 289s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 289s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 289s using 1 OpenMP thread(s) per MPI task 289s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 289s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 289s 2 by 1 by 1 MPI processor grid 289s Created 400 atoms 289s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 289s create_atoms CPU = 0.000 seconds 289s Setting atom values ... 289s 29 settings made for type/fraction 289s Setting atom values ... 289s 371 settings made for mass 289s Setting atom values ... 289s 29 settings made for mass 289s Setting atom values ... 289s 371 settings made for shape 289s Setting atom values ... 289s 29 settings made for shape 289s Setting atom values ... 289s 400 settings made for quat/random 289s 371 atoms in group spheroid 289s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 289s Neighbor list info ... 289s update: every = 1 steps, delay = 0 steps, check = yes 289s max neighbors/atom: 2000, page size: 100000 289s master list distance cutoff = 4.8 289s ghost atom cutoff = 4.8 289s binsize = 2.4, bins = 59 59 3 289s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 289s (1) pair resquared, perpetual 289s attributes: half, newton on 289s pair build: half/bin/atomonly/newton 289s stencil: half/bin/2d 289s bin: standard 289s Setting up Verlet run ... 289s Unit style : lj 289s Current step : 0 289s Time step : 0.002 289s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 289s Step c_rot E_pair TotEng Press Volume 289s 0 2.3158404 0 2.394 0.04788 20000 289s 100 1.7101139 0 1.7678302 0.034413192 20548.286 289s 200 2.3115592 0 2.3895743 0.04649702 20556.796 289s 300 1.831333 0 1.8931405 0.041256922 18354.646 289s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 289s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 289s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 289s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 289s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 290s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 290s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 290s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 290s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 290s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 290s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 290s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 290s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 290s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 290s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 290s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 290s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 290s Loop time of 0.568519 on 2 procs for 2000 steps with 400 atoms 290s 290s Performance: 607895.469 tau/day, 3517.914 timesteps/s, 1.407 Matom-step/s 290s 98.0% CPU use with 2 MPI tasks x 1 OpenMP threads 290s 290s MPI task timing breakdown: 290s Section | min time | avg time | max time |%varavg| %total 290s --------------------------------------------------------------- 290s Pair | 0.39062 | 0.40223 | 0.41384 | 1.8 | 70.75 290s Neigh | 0.010603 | 0.010713 | 0.010822 | 0.1 | 1.88 290s Comm | 0.03718 | 0.048649 | 0.060118 | 5.2 | 8.56 290s Output | 0.016227 | 0.01637 | 0.016514 | 0.1 | 2.88 290s Modify | 0.080286 | 0.081035 | 0.081784 | 0.3 | 14.25 290s Other | | 0.009518 | | | 1.67 290s 290s Nlocal: 200 ave 210 max 190 min 290s Histogram: 1 0 0 0 0 0 0 0 0 1 290s Nghost: 164 ave 168 max 160 min 290s Histogram: 1 0 0 0 0 0 0 0 0 1 290s Neighs: 910 ave 958 max 862 min 290s Histogram: 1 0 0 0 0 0 0 0 0 1 290s 290s Total # of neighbors = 1820 290s Ave neighs/atom = 4.55 290s Neighbor list builds = 420 290s Dangerous builds = 0 290s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 290s Setting up Verlet run ... 290s Unit style : lj 290s Current step : 2000 290s Time step : 0.002 290s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 290s Step c_rot E_pair TotEng Press Volume 290s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 290s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 290s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 290s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 290s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 290s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 290s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 290s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 290s 2800 1.9890373 0.15589592 2.1204126 1.2343376 1639.6982 290s 2900 1.9922852 0.15256975 2.0956529 1.2419165 1639.6982 290s 3000 1.9618081 0.18405955 2.1392907 1.3468024 1639.6982 290s 3100 1.920815 0.22640753 2.1223513 1.6487874 1639.6982 290s 3200 1.9201455 0.22718151 2.1360379 1.537008 1639.6982 290s 3300 2.0073207 0.13690691 2.1185858 1.1973827 1639.6982 291s 3400 2.0179674 0.12601938 2.1227815 1.0847666 1639.6982 291s 3500 1.9561038 0.18991636 2.11504 1.3377604 1639.6982 291s 3600 1.9971208 0.14756321 2.1401442 1.2026471 1639.6982 291s 3700 1.9731986 0.17227975 2.1472974 1.2730305 1639.6982 291s 3800 2.0000945 0.1444447 2.0994588 1.1502433 1639.6982 291s 3900 1.9911415 0.15372488 2.1423535 1.227966 1639.6982 291s 4000 1.9822293 0.16299254 2.0899439 1.2166942 1639.6982 291s Loop time of 0.852921 on 2 procs for 2000 steps with 400 atoms 291s 291s Performance: 405195.563 tau/day, 2344.882 timesteps/s, 937.953 katom-step/s 291s 99.0% CPU use with 2 MPI tasks x 1 OpenMP threads 291s 291s MPI task timing breakdown: 291s Section | min time | avg time | max time |%varavg| %total 291s --------------------------------------------------------------- 291s Pair | 0.68156 | 0.71826 | 0.75495 | 4.3 | 84.21 291s Neigh | 0.0020851 | 0.002237 | 0.0023889 | 0.3 | 0.26 291s Comm | 0.028707 | 0.065519 | 0.10233 | 14.4 | 7.68 291s Output | 0.016816 | 0.016953 | 0.01709 | 0.1 | 1.99 291s Modify | 0.039324 | 0.041878 | 0.044433 | 1.2 | 4.91 291s Other | | 0.008079 | | | 0.95 291s 291s Nlocal: 200 ave 212 max 188 min 291s Histogram: 1 0 0 0 0 0 0 0 0 1 291s Nghost: 171.5 ave 173 max 170 min 291s Histogram: 1 0 0 0 0 0 0 0 0 1 291s Neighs: 880.5 ave 946 max 815 min 291s Histogram: 1 0 0 0 0 0 0 0 0 1 291s 291s Total # of neighbors = 1761 291s Ave neighs/atom = 4.4025 291s Neighbor list builds = 49 291s Dangerous builds = 0 291s Total wall time: 0:00:01 291s LAMMPS (7 Feb 2024 - Update 1) 292s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 292s using 1 OpenMP thread(s) per MPI task 292s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 292s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 292s 1 by 1 by 1 MPI processor grid 292s Created 400 atoms 292s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 292s create_atoms CPU = 0.000 seconds 292s Setting atom values ... 292s 29 settings made for type/fraction 292s Setting atom values ... 292s 371 settings made for mass 292s Setting atom values ... 292s 29 settings made for mass 292s Setting atom values ... 292s 371 settings made for shape 292s Setting atom values ... 292s 29 settings made for shape 292s Setting atom values ... 292s 400 settings made for quat/random 292s 371 atoms in group spheroid 292s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 292s Neighbor list info ... 292s update: every = 1 steps, delay = 0 steps, check = yes 292s max neighbors/atom: 2000, page size: 100000 292s master list distance cutoff = 4.8 292s ghost atom cutoff = 4.8 292s binsize = 2.4, bins = 59 59 3 292s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 292s (1) pair resquared, perpetual 292s attributes: half, newton on 292s pair build: half/bin/atomonly/newton 292s stencil: half/bin/2d 292s bin: standard 292s Setting up Verlet run ... 292s Unit style : lj 292s Current step : 0 292s Time step : 0.002 292s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 292s Step c_rot E_pair TotEng Press Volume 292s 0 2.3158404 0 2.394 0.04788 20000 292s 100 1.7101139 0 1.7678302 0.034413192 20548.286 292s 200 2.3115592 0 2.3895743 0.04649702 20556.796 292s 300 1.831333 0 1.8931405 0.041256922 18354.646 292s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 292s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 292s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 292s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 292s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 292s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 292s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 292s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 292s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 292s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 292s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 292s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 292s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 292s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 292s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 292s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 292s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 292s Loop time of 0.982127 on 1 procs for 2000 steps with 400 atoms 292s 292s Performance: 351889.337 tau/day, 2036.397 timesteps/s, 814.559 katom-step/s 292s 98.7% CPU use with 1 MPI tasks x 1 OpenMP threads 292s 292s MPI task timing breakdown: 292s Section | min time | avg time | max time |%varavg| %total 292s --------------------------------------------------------------- 292s Pair | 0.79018 | 0.79018 | 0.79018 | 0.0 | 80.46 292s Neigh | 0.021498 | 0.021498 | 0.021498 | 0.0 | 2.19 292s Comm | 0.0083636 | 0.0083636 | 0.0083636 | 0.0 | 0.85 292s Output | 0.01955 | 0.01955 | 0.01955 | 0.0 | 1.99 292s Modify | 0.13662 | 0.13662 | 0.13662 | 0.0 | 13.91 293s Other | | 0.005913 | | | 0.60 293s 293s Nlocal: 400 ave 400 max 400 min 293s Histogram: 1 0 0 0 0 0 0 0 0 0 293s Nghost: 206 ave 206 max 206 min 293s Histogram: 1 0 0 0 0 0 0 0 0 0 293s Neighs: 1820 ave 1820 max 1820 min 293s Histogram: 1 0 0 0 0 0 0 0 0 0 293s 293s Total # of neighbors = 1820 293s Ave neighs/atom = 4.55 293s Neighbor list builds = 420 293s Dangerous builds = 0 293s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 293s Setting up Verlet run ... 293s Unit style : lj 293s Current step : 2000 293s Time step : 0.002 293s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 293s Step c_rot E_pair TotEng Press Volume 293s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 293s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 293s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 293s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 293s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 293s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 293s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 293s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 293s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 293s 2900 1.9922852 0.15256971 2.0956529 1.2419163 1639.6982 293s 3000 1.9618081 0.18405956 2.1392907 1.3468024 1639.6982 293s 3100 1.9208147 0.22640783 2.1223514 1.6487893 1639.6982 293s 3200 1.9201454 0.2271816 2.136038 1.5370083 1639.6982 293s 3300 2.0073199 0.13690769 2.1185864 1.1973892 1639.6982 293s 3400 2.0179674 0.12601938 2.1227814 1.0847667 1639.6982 293s 3500 1.9561059 0.1899142 2.1150384 1.3377509 1639.6982 293s 3600 1.9971218 0.14756225 2.1401434 1.2026401 1639.6982 293s 3700 1.9731874 0.17229133 2.1473283 1.2730808 1639.6982 293s 3800 2.0000992 0.14443988 2.0994807 1.1502356 1639.6982 293s 3900 1.9911429 0.15372349 2.1424035 1.227982 1639.6982 293s 4000 1.9823333 0.16288519 2.0899581 1.2162824 1639.6982 293s Loop time of 1.54934 on 1 procs for 2000 steps with 400 atoms 293s 293s Performance: 223062.638 tau/day, 1290.872 timesteps/s, 516.349 katom-step/s 293s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 293s 293s MPI task timing breakdown: 293s Section | min time | avg time | max time |%varavg| %total 293s --------------------------------------------------------------- 293s Pair | 1.4266 | 1.4266 | 1.4266 | 0.0 | 92.08 293s Neigh | 0.0042994 | 0.0042994 | 0.0042994 | 0.0 | 0.28 293s Comm | 0.0094501 | 0.0094501 | 0.0094501 | 0.0 | 0.61 293s Output | 0.019713 | 0.019713 | 0.019713 | 0.0 | 1.27 293s Modify | 0.084465 | 0.084465 | 0.084465 | 0.0 | 5.45 293s Other | | 0.00481 | | | 0.31 293s 293s Nlocal: 400 ave 400 max 400 min 293s Histogram: 1 0 0 0 0 0 0 0 0 0 293s Nghost: 215 ave 215 max 215 min 293s Histogram: 1 0 0 0 0 0 0 0 0 0 293s Neighs: 1761 ave 1761 max 1761 min 293s Histogram: 1 0 0 0 0 0 0 0 0 0 293s 293s Total # of neighbors = 1761 293s Ave neighs/atom = 4.4025 293s Neighbor list builds = 49 293s Dangerous builds = 0 293s Total wall time: 0:00:02 293s run: OK 294s autopkgtest [00:11:01]: test ellipse: -----------------------] 294s ellipse PASS 294s autopkgtest [00:11:01]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 295s autopkgtest [00:11:02]: test flow: preparing testbed 295s Reading package lists... 295s Building dependency tree... 295s Reading state information... 296s Starting pkgProblemResolver with broken count: 0 296s Starting 2 pkgProblemResolver with broken count: 0 296s Done 297s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 298s autopkgtest [00:11:05]: test flow: [----------------------- 298s LAMMPS (7 Feb 2024 - Update 1) 298s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 298s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 298s using 1 OpenMP thread(s) per MPI task 298s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 298s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 298s 2 by 1 by 1 MPI processor grid 298s Created 420 atoms 298s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 298s create_atoms CPU = 0.000 seconds 298s 60 atoms in group lower 298s 60 atoms in group upper 298s 120 atoms in group boundary 298s 300 atoms in group flow 298s Setting atom values ... 298s 60 settings made for type 298s Setting atom values ... 298s 60 settings made for type 298s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 298s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 298s Neighbor list info ... 298s update: every = 1 steps, delay = 5 steps, check = yes 298s max neighbors/atom: 2000, page size: 100000 298s master list distance cutoff = 1.42246 298s ghost atom cutoff = 1.42246 298s binsize = 0.71123, bins = 37 32 1 298s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 298s (1) pair lj/cut, perpetual 298s attributes: half, newton on 298s pair build: half/bin/atomonly/newton 298s stencil: half/bin/2d 298s bin: standard 298s Setting up Verlet run ... 298s Unit style : lj 298s Current step : 0 298s Time step : 0.003 298s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 298s Step Temp E_pair E_mol TotEng Press Volume 298s 0 1 0 0 0.71190476 0.52314537 571.54286 298s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 298s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 298s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 298s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 298s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 298s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 298s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 298s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 298s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 298s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 298s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 298s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 298s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 298s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 298s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 298s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 298s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 298s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 298s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 298s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 298s Loop time of 0.149749 on 2 procs for 10000 steps with 420 atoms 298s 298s Performance: 17308917.547 tau/day, 66778.231 timesteps/s, 28.047 Matom-step/s 298s 96.3% CPU use with 2 MPI tasks x 1 OpenMP threads 298s 298s MPI task timing breakdown: 298s Section | min time | avg time | max time |%varavg| %total 298s --------------------------------------------------------------- 298s Pair | 0.036138 | 0.036219 | 0.0363 | 0.0 | 24.19 298s Neigh | 0.020183 | 0.020455 | 0.020726 | 0.2 | 13.66 298s Comm | 0.047141 | 0.047817 | 0.048492 | 0.3 | 31.93 298s Output | 0.00040033 | 0.00086546 | 0.0013306 | 0.0 | 0.58 298s Modify | 0.026642 | 0.027141 | 0.02764 | 0.3 | 18.12 298s Other | | 0.01725 | | | 11.52 298s 298s Nlocal: 210 ave 214 max 206 min 298s Histogram: 1 0 0 0 0 0 0 0 0 1 298s Nghost: 51 ave 52 max 50 min 298s Histogram: 1 0 0 0 0 0 0 0 0 1 298s Neighs: 472 ave 494 max 450 min 298s Histogram: 1 0 0 0 0 0 0 0 0 1 298s 298s Total # of neighbors = 944 298s Ave neighs/atom = 2.247619 298s Neighbor list builds = 994 298s Dangerous builds = 0 298s Total wall time: 0:00:00 298s LAMMPS (7 Feb 2024 - Update 1) 298s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 298s using 1 OpenMP thread(s) per MPI task 298s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 298s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 298s 1 by 1 by 1 MPI processor grid 298s Created 420 atoms 298s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 298s create_atoms CPU = 0.000 seconds 298s 60 atoms in group lower 298s 60 atoms in group upper 298s 120 atoms in group boundary 298s 300 atoms in group flow 298s Setting atom values ... 298s 60 settings made for type 298s Setting atom values ... 298s 60 settings made for type 298s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 298s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 298s Neighbor list info ... 298s update: every = 1 steps, delay = 5 steps, check = yes 298s max neighbors/atom: 2000, page size: 100000 298s master list distance cutoff = 1.42246 298s ghost atom cutoff = 1.42246 298s binsize = 0.71123, bins = 37 32 1 298s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 298s (1) pair lj/cut, perpetual 298s attributes: half, newton on 298s pair build: half/bin/atomonly/newton 298s stencil: half/bin/2d 298s bin: standard 298s Setting up Verlet run ... 298s Unit style : lj 298s Current step : 0 298s Time step : 0.003 298s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 298s Step Temp E_pair E_mol TotEng Press Volume 298s 0 1 0 0 0.71190476 0.52314537 571.54286 298s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 298s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 298s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 298s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 298s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 298s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 298s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 298s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 298s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 298s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 298s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 298s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 298s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 298s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 298s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 298s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 298s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 298s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 298s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 298s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 298s Loop time of 0.185634 on 1 procs for 10000 steps with 420 atoms 298s 298s Performance: 13962930.714 tau/day, 53869.331 timesteps/s, 22.625 Matom-step/s 298s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 298s 298s MPI task timing breakdown: 298s Section | min time | avg time | max time |%varavg| %total 298s --------------------------------------------------------------- 298s Pair | 0.072627 | 0.072627 | 0.072627 | 0.0 | 39.12 298s Neigh | 0.039256 | 0.039256 | 0.039256 | 0.0 | 21.15 298s Comm | 0.0065925 | 0.0065925 | 0.0065925 | 0.0 | 3.55 298s Output | 0.00033097 | 0.00033097 | 0.00033097 | 0.0 | 0.18 298s Modify | 0.050119 | 0.050119 | 0.050119 | 0.0 | 27.00 298s Other | | 0.01671 | | | 9.00 298s 298s Nlocal: 420 ave 420 max 420 min 298s Histogram: 1 0 0 0 0 0 0 0 0 0 298s Nghost: 50 ave 50 max 50 min 298s Histogram: 1 0 0 0 0 0 0 0 0 0 298s Neighs: 946 ave 946 max 946 min 298s Histogram: 1 0 0 0 0 0 0 0 0 0 298s 298s Total # of neighbors = 946 298s Ave neighs/atom = 2.252381 298s Neighbor list builds = 979 298s Dangerous builds = 0 298s Total wall time: 0:00:00 299s LAMMPS (7 Feb 2024 - Update 1) 299s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 299s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 299s using 1 OpenMP thread(s) per MPI task 299s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 299s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 299s 2 by 1 by 1 MPI processor grid 299s Created 420 atoms 299s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 299s create_atoms CPU = 0.000 seconds 299s 60 atoms in group lower 299s 60 atoms in group upper 299s 120 atoms in group boundary 299s 300 atoms in group flow 299s Setting atom values ... 299s 60 settings made for type 299s Setting atom values ... 299s 60 settings made for type 299s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 299s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 299s Neighbor list info ... 299s update: every = 1 steps, delay = 5 steps, check = yes 299s max neighbors/atom: 2000, page size: 100000 299s master list distance cutoff = 1.42246 299s ghost atom cutoff = 1.42246 299s binsize = 0.71123, bins = 37 32 1 299s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 299s (1) pair lj/cut, perpetual 299s attributes: half, newton on 299s pair build: half/bin/atomonly/newton 299s stencil: half/bin/2d 299s bin: standard 299s Setting up Verlet run ... 299s Unit style : lj 299s Current step : 0 299s Time step : 0.003 299s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 299s Step Temp E_pair E_mol TotEng Press Volume 299s 0 1 0 0 0.71190476 0.52314537 571.54286 299s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 299s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 299s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 299s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 299s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 299s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 299s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 299s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 299s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 299s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 299s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 299s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 299s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 299s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 299s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 299s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 299s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 299s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 299s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 299s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 299s Loop time of 0.183615 on 2 procs for 10000 steps with 420 atoms 299s 299s Performance: 14116500.900 tau/day, 54461.809 timesteps/s, 22.874 Matom-step/s 299s 97.6% CPU use with 2 MPI tasks x 1 OpenMP threads 299s 299s MPI task timing breakdown: 299s Section | min time | avg time | max time |%varavg| %total 299s --------------------------------------------------------------- 299s Pair | 0.040043 | 0.040209 | 0.040375 | 0.1 | 21.90 299s Neigh | 0.012008 | 0.012039 | 0.012071 | 0.0 | 6.56 299s Comm | 0.056533 | 0.05715 | 0.057767 | 0.3 | 31.12 299s Output | 0.00034317 | 0.0013792 | 0.0024152 | 2.8 | 0.75 299s Modify | 0.055522 | 0.055682 | 0.055841 | 0.1 | 30.33 299s Other | | 0.01716 | | | 9.34 299s 299s Nlocal: 210 ave 211 max 209 min 299s Histogram: 1 0 0 0 0 0 0 0 0 1 299s Nghost: 50 ave 51 max 49 min 299s Histogram: 1 0 0 0 0 0 0 0 0 1 299s Neighs: 563.5 ave 569 max 558 min 299s Histogram: 1 0 0 0 0 0 0 0 0 1 299s 299s Total # of neighbors = 1127 299s Ave neighs/atom = 2.6833333 299s Neighbor list builds = 560 299s Dangerous builds = 0 299s Total wall time: 0:00:00 299s LAMMPS (7 Feb 2024 - Update 1) 299s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 299s using 1 OpenMP thread(s) per MPI task 299s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 299s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 299s 1 by 1 by 1 MPI processor grid 299s Created 420 atoms 299s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 299s create_atoms CPU = 0.000 seconds 299s 60 atoms in group lower 299s 60 atoms in group upper 299s 120 atoms in group boundary 299s 300 atoms in group flow 299s Setting atom values ... 299s 60 settings made for type 299s Setting atom values ... 299s 60 settings made for type 299s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 299s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 299s Neighbor list info ... 299s update: every = 1 steps, delay = 5 steps, check = yes 299s max neighbors/atom: 2000, page size: 100000 299s master list distance cutoff = 1.42246 299s ghost atom cutoff = 1.42246 299s binsize = 0.71123, bins = 37 32 1 299s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 299s (1) pair lj/cut, perpetual 299s attributes: half, newton on 299s pair build: half/bin/atomonly/newton 299s stencil: half/bin/2d 299s bin: standard 299s Setting up Verlet run ... 299s Unit style : lj 299s Current step : 0 299s Time step : 0.003 299s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 299s Step Temp E_pair E_mol TotEng Press Volume 299s 0 1 0 0 0.71190476 0.52314537 571.54286 299s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 299s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 299s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 299s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 299s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 299s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 299s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 299s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 299s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 299s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 299s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 299s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 299s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 299s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 299s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 299s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 299s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 299s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 299s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 299s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 299s Loop time of 0.216153 on 1 procs for 10000 steps with 420 atoms 299s 299s Performance: 11991521.550 tau/day, 46263.586 timesteps/s, 19.431 Matom-step/s 299s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 299s 299s MPI task timing breakdown: 299s Section | min time | avg time | max time |%varavg| %total 299s --------------------------------------------------------------- 299s Pair | 0.07911 | 0.07911 | 0.07911 | 0.0 | 36.60 299s Neigh | 0.022769 | 0.022769 | 0.022769 | 0.0 | 10.53 299s Comm | 0.0052813 | 0.0052813 | 0.0052813 | 0.0 | 2.44 299s Output | 0.00033609 | 0.00033609 | 0.00033609 | 0.0 | 0.16 299s Modify | 0.092562 | 0.092562 | 0.092562 | 0.0 | 42.82 299s Other | | 0.01609 | | | 7.45 299s 299s Nlocal: 420 ave 420 max 420 min 299s Histogram: 1 0 0 0 0 0 0 0 0 0 299s Nghost: 51 ave 51 max 51 min 299s Histogram: 1 0 0 0 0 0 0 0 0 0 299s Neighs: 1150 ave 1150 max 1150 min 299s Histogram: 1 0 0 0 0 0 0 0 0 0 299s 299s Total # of neighbors = 1150 299s Ave neighs/atom = 2.7380952 299s Neighbor list builds = 563 299s Dangerous builds = 0 299s Total wall time: 0:00:00 299s run: OK 300s autopkgtest [00:11:07]: test flow: -----------------------] 300s flow PASS 300s autopkgtest [00:11:07]: test flow: - - - - - - - - - - results - - - - - - - - - - 301s autopkgtest [00:11:08]: test friction: preparing testbed 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 302s Starting pkgProblemResolver with broken count: 0 302s Starting 2 pkgProblemResolver with broken count: 0 302s Done 302s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 303s autopkgtest [00:11:10]: test friction: [----------------------- 304s LAMMPS (7 Feb 2024 - Update 1) 304s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 304s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 304s using 1 OpenMP thread(s) per MPI task 304s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 304s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 304s 2 by 1 by 1 MPI processor grid 304s Created 750 atoms 304s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 304s create_atoms CPU = 0.001 seconds 304s Created 750 atoms 304s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 304s create_atoms CPU = 0.000 seconds 304s Created 112 atoms 304s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 304s create_atoms CPU = 0.000 seconds 304s Created 112 atoms 304s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 304s create_atoms CPU = 0.000 seconds 304s 750 atoms in group lo 304s 862 atoms in group lo 304s 750 atoms in group hi 304s 862 atoms in group hi 304s 150 atoms in group lo-fixed 304s 150 atoms in group hi-fixed 304s 300 atoms in group boundary 304s 1424 atoms in group mobile 304s Setting atom values ... 304s 150 settings made for type 304s Setting atom values ... 304s 150 settings made for type 304s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 304s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 304s Neighbor list info ... 304s update: every = 1 steps, delay = 5 steps, check = yes 304s max neighbors/atom: 2000, page size: 100000 304s master list distance cutoff = 2.8 304s ghost atom cutoff = 2.8 304s binsize = 1.4, bins = 41 31 1 304s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 304s (1) pair lj/cut, perpetual 304s attributes: half, newton on 304s pair build: half/bin/atomonly/newton 304s stencil: half/bin/2d 304s bin: standard 304s Setting up Verlet run ... 304s Unit style : lj 304s Current step : 0 304s Time step : 0.0025 304s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 304s Step Temp E_pair E_mol TotEng Press Volume 304s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 304s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 304s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 304s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 304s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 304s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 304s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 305s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 305s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 305s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 305s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 305s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 305s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 305s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 306s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 306s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 306s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 306s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 306s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 306s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 306s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 306s Loop time of 2.50842 on 2 procs for 20000 steps with 1724 atoms 306s 306s Performance: 1722197.078 tau/day, 7973.135 timesteps/s, 13.746 Matom-step/s 306s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 306s 306s MPI task timing breakdown: 306s Section | min time | avg time | max time |%varavg| %total 306s --------------------------------------------------------------- 306s Pair | 1.631 | 1.7519 | 1.8727 | 9.1 | 69.84 306s Neigh | 0.10186 | 0.11203 | 0.1222 | 3.0 | 4.47 306s Comm | 0.20426 | 0.33798 | 0.47169 | 23.0 | 13.47 306s Output | 0.00047373 | 0.0015662 | 0.0026587 | 2.8 | 0.06 306s Modify | 0.19671 | 0.20929 | 0.22186 | 2.7 | 8.34 306s Other | | 0.09567 | | | 3.81 306s 306s Nlocal: 862 ave 874 max 850 min 306s Histogram: 1 0 0 0 0 0 0 0 0 1 306s Nghost: 165.5 ave 166 max 165 min 306s Histogram: 1 0 0 0 0 0 0 0 0 1 306s Neighs: 7198 ave 7283 max 7113 min 306s Histogram: 1 0 0 0 0 0 0 0 0 1 306s 306s Total # of neighbors = 14396 306s Ave neighs/atom = 8.350348 306s Neighbor list builds = 720 306s Dangerous builds = 0 306s Total wall time: 0:00:02 306s LAMMPS (7 Feb 2024 - Update 1) 310s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 310s using 1 OpenMP thread(s) per MPI task 310s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 310s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 310s 1 by 1 by 1 MPI processor grid 310s Created 750 atoms 310s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 310s create_atoms CPU = 0.000 seconds 310s Created 750 atoms 310s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 310s create_atoms CPU = 0.000 seconds 310s Created 112 atoms 310s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 310s create_atoms CPU = 0.000 seconds 310s Created 112 atoms 310s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 310s create_atoms CPU = 0.000 seconds 310s 750 atoms in group lo 310s 862 atoms in group lo 310s 750 atoms in group hi 310s 862 atoms in group hi 310s 150 atoms in group lo-fixed 310s 150 atoms in group hi-fixed 310s 300 atoms in group boundary 310s 1424 atoms in group mobile 310s Setting atom values ... 310s 150 settings made for type 310s Setting atom values ... 310s 150 settings made for type 310s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 310s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 310s Neighbor list info ... 310s update: every = 1 steps, delay = 5 steps, check = yes 310s max neighbors/atom: 2000, page size: 100000 310s master list distance cutoff = 2.8 310s ghost atom cutoff = 2.8 310s binsize = 1.4, bins = 41 31 1 310s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 310s (1) pair lj/cut, perpetual 310s attributes: half, newton on 310s pair build: half/bin/atomonly/newton 310s stencil: half/bin/2d 310s bin: standard 310s Setting up Verlet run ... 310s Unit style : lj 310s Current step : 0 310s Time step : 0.0025 310s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 310s Step Temp E_pair E_mol TotEng Press Volume 310s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 310s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 310s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 310s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 310s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 310s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 310s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 310s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 310s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 310s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 310s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 310s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 310s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 310s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 310s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 310s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 310s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 310s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 310s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 311s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 311s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 311s Loop time of 4.27393 on 1 procs for 20000 steps with 1724 atoms 311s 311s Performance: 1010779.344 tau/day, 4679.534 timesteps/s, 8.068 Matom-step/s 311s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 311s 311s MPI task timing breakdown: 311s Section | min time | avg time | max time |%varavg| %total 311s --------------------------------------------------------------- 311s Pair | 3.4833 | 3.4833 | 3.4833 | 0.0 | 81.50 311s Neigh | 0.21221 | 0.21221 | 0.21221 | 0.0 | 4.97 311s Comm | 0.031038 | 0.031038 | 0.031038 | 0.0 | 0.73 311s Output | 0.00053388 | 0.00053388 | 0.00053388 | 0.0 | 0.01 311s Modify | 0.43025 | 0.43025 | 0.43025 | 0.0 | 10.07 311s Other | | 0.1166 | | | 2.73 311s 311s Nlocal: 1724 ave 1724 max 1724 min 311s Histogram: 1 0 0 0 0 0 0 0 0 0 311s Nghost: 145 ave 145 max 145 min 311s Histogram: 1 0 0 0 0 0 0 0 0 0 311s Neighs: 14397 ave 14397 max 14397 min 311s Histogram: 1 0 0 0 0 0 0 0 0 0 311s 311s Total # of neighbors = 14397 311s Ave neighs/atom = 8.3509281 311s Neighbor list builds = 723 311s Dangerous builds = 0 311s Total wall time: 0:00:04 311s run: OK 311s autopkgtest [00:11:18]: test friction: -----------------------] 311s friction PASS 311s autopkgtest [00:11:18]: test friction: - - - - - - - - - - results - - - - - - - - - - 312s autopkgtest [00:11:19]: test hugo: preparing testbed 312s Reading package lists... 312s Building dependency tree... 312s Reading state information... 313s Starting pkgProblemResolver with broken count: 0 313s Starting 2 pkgProblemResolver with broken count: 0 313s Done 314s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 315s autopkgtest [00:11:22]: test hugo: [----------------------- 315s LAMMPS (7 Feb 2024 - Update 1) 315s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 315s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 315s using 1 OpenMP thread(s) per MPI task 315s Lattice spacing in x,y,z = 1.4142135 2 2 315s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 315s 1 by 1 by 2 MPI processor grid 315s Created 1000 atoms 315s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 315s create_atoms CPU = 0.000 seconds 315s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 315s Neighbor list info ... 315s update: every = 1 steps, delay = 0 steps, check = yes 315s max neighbors/atom: 2000, page size: 100000 315s master list distance cutoff = 1.8475372 315s ghost atom cutoff = 1.8475372 315s binsize = 0.92376862, bins = 8 11 11 315s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 315s (1) pair lj/cubic, perpetual 315s attributes: half, newton on 315s pair build: half/bin/atomonly/newton 315s stencil: half/bin/3d 315s bin: standard 315s Setting up cg style minimization ... 315s Unit style : lj 315s Current step : 0 315s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 315s (src/min.cpp:219) 315s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 315s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 315s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 315s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 315s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 315s Loop time of 0.0345735 on 2 procs for 134 steps with 1000 atoms 315s 315s 96.1% CPU use with 2 MPI tasks x 1 OpenMP threads 315s 315s Minimization stats: 315s Stopping criterion = force tolerance 315s Energy initial, next-to-last, final = 315s -6.29375358358574 -6.33442531515467 -6.33442531515467 315s Force two-norm initial, final = 3395.2895 5.526433e-10 315s Force max component initial, final = 1960.2713 3.2059964e-10 315s Final line search alpha, max atom move = 1 3.2059964e-10 315s Iterations, force evaluations = 134 137 315s 315s MPI task timing breakdown: 315s Section | min time | avg time | max time |%varavg| %total 315s --------------------------------------------------------------- 315s Pair | 0.01977 | 0.021697 | 0.023624 | 1.3 | 62.76 315s Neigh | 0.00041141 | 0.00044555 | 0.00047969 | 0.0 | 1.29 315s Comm | 0.0036626 | 0.0055888 | 0.007515 | 2.6 | 16.16 315s Output | 2.164e-05 | 7.6821e-05 | 0.000132 | 0.0 | 0.22 315s Modify | 0 | 0 | 0 | 0.0 | 0.00 315s Other | | 0.006765 | | | 19.57 315s 315s Nlocal: 500 ave 550 max 450 min 315s Histogram: 1 0 0 0 0 0 0 0 0 1 315s Nghost: 1214 ave 1264 max 1164 min 315s Histogram: 1 0 0 0 0 0 0 0 0 1 315s Neighs: 10500 ave 11550 max 9450 min 315s Histogram: 1 0 0 0 0 0 0 0 0 1 315s 315s Total # of neighbors = 21000 315s Ave neighs/atom = 21 315s Neighbor list builds = 1 315s Dangerous builds = 0 315s System init for write_restart ... 315s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 315s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 315s using 1 OpenMP thread(s) per MPI task 315s Reading restart file ... 315s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 315s restoring atom style atomic from restart 315s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 315s 1 by 1 by 2 MPI processor grid 315s restoring pair style lj/cubic from restart 315s 1000 atoms 315s read_restart CPU = 0.001 seconds 315s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 315s Neighbor list info ... 315s update: every = 1 steps, delay = 0 steps, check = yes 315s max neighbors/atom: 2000, page size: 100000 315s master list distance cutoff = 1.7475372 315s ghost atom cutoff = 1.7475372 315s binsize = 0.87376862, bins = 8 12 12 315s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 315s (1) pair lj/cubic, perpetual 315s attributes: half, newton on 315s pair build: half/bin/atomonly/newton 315s stencil: half/bin/3d 315s bin: standard 315s Setting up Verlet run ... 315s Unit style : lj 315s Current step : 0 315s Time step : 0.001 315s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 315s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 315s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 315s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 316s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 316s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 316s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 316s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 317s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 317s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 317s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 318s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 318s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 318s Loop time of 3.07489 on 2 procs for 10000 steps with 1000 atoms 318s 318s Performance: 280985.534 tau/day, 3252.147 timesteps/s, 3.252 Matom-step/s 318s 93.9% CPU use with 2 MPI tasks x 1 OpenMP threads 318s 318s MPI task timing breakdown: 318s Section | min time | avg time | max time |%varavg| %total 318s --------------------------------------------------------------- 318s Pair | 2.0422 | 2.051 | 2.0599 | 0.6 | 66.70 318s Neigh | 0.089669 | 0.091617 | 0.093565 | 0.6 | 2.98 318s Comm | 0.42236 | 0.43321 | 0.44405 | 1.6 | 14.09 318s Output | 0.00066413 | 0.0011834 | 0.0017027 | 1.5 | 0.04 318s Modify | 0.43859 | 0.44142 | 0.44426 | 0.4 | 14.36 318s Other | | 0.05641 | | | 1.83 318s 318s Nlocal: 500 ave 509 max 491 min 318s Histogram: 1 0 0 0 0 0 0 0 0 1 318s Nghost: 1346.5 ave 1369 max 1324 min 318s Histogram: 1 0 0 0 0 0 0 0 0 1 318s Neighs: 10311.5 ave 10391 max 10232 min 318s Histogram: 1 0 0 0 0 0 0 0 0 1 318s 318s Total # of neighbors = 20623 318s Ave neighs/atom = 20.623 318s Neighbor list builds = 205 318s Dangerous builds = 0 318s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 318s using 1 OpenMP thread(s) per MPI task 318s Reading restart file ... 318s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 318s restoring atom style atomic from restart 318s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 318s 1 by 1 by 2 MPI processor grid 318s restoring pair style lj/cubic from restart 318s 1000 atoms 318s read_restart CPU = 0.001 seconds 318s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 318s Neighbor list info ... 318s update: every = 1 steps, delay = 0 steps, check = yes 318s max neighbors/atom: 2000, page size: 100000 318s master list distance cutoff = 1.7475372 318s ghost atom cutoff = 1.7475372 318s binsize = 0.87376862, bins = 8 12 12 318s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 318s (1) pair lj/cubic, perpetual 318s attributes: half, newton on 318s pair build: half/bin/atomonly/newton 318s stencil: half/bin/3d 318s bin: standard 318s Setting up Verlet run ... 318s Unit style : lj 318s Current step : 0 318s Time step : 0.001 318s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 318s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 318s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 318s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 319s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 319s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 319s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 319s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 320s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 320s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 320s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 320s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 321s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 321s Loop time of 2.7141 on 2 procs for 10000 steps with 1000 atoms 321s 321s Performance: 318337.545 tau/day, 3684.462 timesteps/s, 3.684 Matom-step/s 321s 93.2% CPU use with 2 MPI tasks x 1 OpenMP threads 321s 321s MPI task timing breakdown: 321s Section | min time | avg time | max time |%varavg| %total 321s --------------------------------------------------------------- 321s Pair | 1.8113 | 1.8264 | 1.8416 | 1.1 | 67.29 321s Neigh | 0.0042964 | 0.0043386 | 0.0043808 | 0.1 | 0.16 321s Comm | 0.3675 | 0.38121 | 0.39493 | 2.2 | 14.05 321s Output | 0.00075889 | 0.0016592 | 0.0025595 | 2.2 | 0.06 321s Modify | 0.44646 | 0.44772 | 0.44897 | 0.2 | 16.50 321s Other | | 0.05274 | | | 1.94 321s 321s Nlocal: 500 ave 508 max 492 min 321s Histogram: 1 0 0 0 0 0 0 0 0 1 321s Nghost: 1214 ave 1222 max 1206 min 321s Histogram: 1 0 0 0 0 0 0 0 0 1 321s Neighs: 10500 ave 10668 max 10332 min 321s Histogram: 1 0 0 0 0 0 0 0 0 1 321s 321s Total # of neighbors = 21000 321s Ave neighs/atom = 21 321s Neighbor list builds = 10 321s Dangerous builds = 0 321s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 321s using 1 OpenMP thread(s) per MPI task 321s Reading restart file ... 321s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 321s restoring atom style atomic from restart 321s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 321s 1 by 1 by 2 MPI processor grid 321s restoring pair style lj/cubic from restart 321s 1000 atoms 321s read_restart CPU = 0.001 seconds 321s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 321s Neighbor list info ... 321s update: every = 1 steps, delay = 0 steps, check = yes 321s max neighbors/atom: 2000, page size: 100000 321s master list distance cutoff = 1.7475372 321s ghost atom cutoff = 1.7475372 321s binsize = 0.87376862, bins = 8 12 12 321s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 321s (1) pair lj/cubic, perpetual 321s attributes: half, newton on 321s pair build: half/bin/atomonly/newton 321s stencil: half/bin/3d 321s bin: standard 321s Setting up Verlet run ... 321s Unit style : lj 321s Current step : 0 321s Time step : 0.001 321s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 321s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 321s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 321s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 321s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 322s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 322s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 322s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 322s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 323s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 323s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 323s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 324s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 324s Loop time of 2.76564 on 2 procs for 10000 steps with 1000 atoms 324s 324s Performance: 312405.560 tau/day, 3615.805 timesteps/s, 3.616 Matom-step/s 324s 94.3% CPU use with 2 MPI tasks x 1 OpenMP threads 324s 324s MPI task timing breakdown: 324s Section | min time | avg time | max time |%varavg| %total 324s --------------------------------------------------------------- 324s Pair | 1.8439 | 1.8531 | 1.8623 | 0.7 | 67.01 324s Neigh | 0.043159 | 0.043188 | 0.043218 | 0.0 | 1.56 324s Comm | 0.35679 | 0.36649 | 0.37619 | 1.6 | 13.25 324s Output | 0.00072689 | 0.0016876 | 0.0026484 | 2.3 | 0.06 324s Modify | 0.44661 | 0.44808 | 0.44955 | 0.2 | 16.20 324s Other | | 0.05307 | | | 1.92 324s 324s Nlocal: 500 ave 510 max 490 min 324s Histogram: 1 0 0 0 0 0 0 0 0 1 324s Nghost: 1216.5 ave 1227 max 1206 min 324s Histogram: 1 0 0 0 0 0 0 0 0 1 324s Neighs: 10311 ave 10520 max 10102 min 324s Histogram: 1 0 0 0 0 0 0 0 0 1 324s 324s Total # of neighbors = 20622 324s Ave neighs/atom = 20.622 324s Neighbor list builds = 95 324s Dangerous builds = 0 324s Total wall time: 0:00:08 324s LAMMPS (7 Feb 2024 - Update 1) 324s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 324s using 1 OpenMP thread(s) per MPI task 324s Lattice spacing in x,y,z = 1.4142135 2 2 324s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 324s 1 by 1 by 1 MPI processor grid 324s Created 1000 atoms 324s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 324s create_atoms CPU = 0.001 seconds 324s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 324s Neighbor list info ... 324s update: every = 1 steps, delay = 0 steps, check = yes 324s max neighbors/atom: 2000, page size: 100000 324s master list distance cutoff = 1.8475372 324s ghost atom cutoff = 1.8475372 324s binsize = 0.92376862, bins = 8 11 11 324s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 324s (1) pair lj/cubic, perpetual 324s attributes: half, newton on 324s pair build: half/bin/atomonly/newton 324s stencil: half/bin/3d 324s bin: standard 324s Setting up cg style minimization ... 324s Unit style : lj 324s Current step : 0 324s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 324s (src/min.cpp:219) 324s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 324s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 324s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 324s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 324s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 324s Loop time of 0.0551304 on 1 procs for 134 steps with 1000 atoms 324s 324s 97.9% CPU use with 1 MPI tasks x 1 OpenMP threads 324s 324s Minimization stats: 324s Stopping criterion = force tolerance 324s Energy initial, next-to-last, final = 324s -6.29375358358556 -6.33442531515503 -6.33442531515503 324s Force two-norm initial, final = 3395.2895 5.6047601e-10 324s Force max component initial, final = 1960.2713 3.2666928e-10 324s Final line search alpha, max atom move = 1 3.2666928e-10 324s Iterations, force evaluations = 134 137 324s 324s MPI task timing breakdown: 324s Section | min time | avg time | max time |%varavg| %total 324s --------------------------------------------------------------- 324s Pair | 0.043898 | 0.043898 | 0.043898 | 0.0 | 79.63 324s Neigh | 0.00082445 | 0.00082445 | 0.00082445 | 0.0 | 1.50 324s Comm | 0.001265 | 0.001265 | 0.001265 | 0.0 | 2.29 324s Output | 2.6121e-05 | 2.6121e-05 | 2.6121e-05 | 0.0 | 0.05 324s Modify | 0 | 0 | 0 | 0.0 | 0.00 324s Other | | 0.009117 | | | 16.54 324s 324s Nlocal: 1000 ave 1000 max 1000 min 324s Histogram: 1 0 0 0 0 0 0 0 0 0 324s Nghost: 1724 ave 1724 max 1724 min 324s Histogram: 1 0 0 0 0 0 0 0 0 0 324s Neighs: 21000 ave 21000 max 21000 min 324s Histogram: 1 0 0 0 0 0 0 0 0 0 324s 324s Total # of neighbors = 21000 324s Ave neighs/atom = 21 324s Neighbor list builds = 1 324s Dangerous builds = 0 324s System init for write_restart ... 324s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 324s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 324s using 1 OpenMP thread(s) per MPI task 324s Reading restart file ... 324s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 324s restoring atom style atomic from restart 324s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 324s 1 by 1 by 1 MPI processor grid 324s restoring pair style lj/cubic from restart 324s 1000 atoms 324s read_restart CPU = 0.001 seconds 324s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 324s Neighbor list info ... 324s update: every = 1 steps, delay = 0 steps, check = yes 324s max neighbors/atom: 2000, page size: 100000 324s master list distance cutoff = 1.7475372 324s ghost atom cutoff = 1.7475372 324s binsize = 0.87376862, bins = 8 12 12 324s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 329s (1) pair lj/cubic, perpetual 329s attributes: half, newton on 329s pair build: half/bin/atomonly/newton 329s stencil: half/bin/3d 329s bin: standard 329s Setting up Verlet run ... 329s Unit style : lj 329s Current step : 0 329s Time step : 0.001 329s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 329s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 329s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 329s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 329s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 329s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 329s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 329s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 329s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 329s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 329s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 329s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 329s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 329s Loop time of 4.99531 on 1 procs for 10000 steps with 1000 atoms 329s 329s Performance: 172962.307 tau/day, 2001.879 timesteps/s, 2.002 Matom-step/s 329s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 329s 329s MPI task timing breakdown: 329s Section | min time | avg time | max time |%varavg| %total 329s --------------------------------------------------------------- 329s Pair | 4.0733 | 4.0733 | 4.0733 | 0.0 | 81.54 329s Neigh | 0.16458 | 0.16458 | 0.16458 | 0.0 | 3.29 329s Comm | 0.098813 | 0.098813 | 0.098813 | 0.0 | 1.98 329s Output | 0.00049257 | 0.00049257 | 0.00049257 | 0.0 | 0.01 329s Modify | 0.61123 | 0.61123 | 0.61123 | 0.0 | 12.24 329s Other | | 0.04687 | | | 0.94 329s 329s Nlocal: 1000 ave 1000 max 1000 min 329s Histogram: 1 0 0 0 0 0 0 0 0 0 329s Nghost: 1886 ave 1886 max 1886 min 329s Histogram: 1 0 0 0 0 0 0 0 0 0 329s Neighs: 20874 ave 20874 max 20874 min 329s Histogram: 1 0 0 0 0 0 0 0 0 0 329s 329s Total # of neighbors = 20874 329s Ave neighs/atom = 20.874 329s Neighbor list builds = 188 329s Dangerous builds = 0 329s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 329s using 1 OpenMP thread(s) per MPI task 329s Reading restart file ... 329s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 329s restoring atom style atomic from restart 329s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 329s 1 by 1 by 1 MPI processor grid 329s restoring pair style lj/cubic from restart 329s 1000 atoms 329s read_restart CPU = 0.000 seconds 329s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 329s Neighbor list info ... 333s update: every = 1 steps, delay = 0 steps, check = yes 333s max neighbors/atom: 2000, page size: 100000 333s master list distance cutoff = 1.7475372 333s ghost atom cutoff = 1.7475372 333s binsize = 0.87376862, bins = 8 12 12 333s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 333s (1) pair lj/cubic, perpetual 333s attributes: half, newton on 333s pair build: half/bin/atomonly/newton 333s stencil: half/bin/3d 333s bin: standard 333s Setting up Verlet run ... 333s Unit style : lj 333s Current step : 0 333s Time step : 0.001 333s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 333s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 333s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 333s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 333s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 333s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 333s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 333s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 333s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 333s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 333s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 333s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 333s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 333s Loop time of 4.38474 on 1 procs for 10000 steps with 1000 atoms 333s 333s Performance: 197047.208 tau/day, 2280.639 timesteps/s, 2.281 Matom-step/s 333s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 333s 333s MPI task timing breakdown: 333s Section | min time | avg time | max time |%varavg| %total 333s --------------------------------------------------------------- 333s Pair | 3.6256 | 3.6256 | 3.6256 | 0.0 | 82.69 333s Neigh | 0.0095313 | 0.0095313 | 0.0095313 | 0.0 | 0.22 333s Comm | 0.087978 | 0.087978 | 0.087978 | 0.0 | 2.01 333s Output | 0.00049476 | 0.00049476 | 0.00049476 | 0.0 | 0.01 333s Modify | 0.61638 | 0.61638 | 0.61638 | 0.0 | 14.06 333s Other | | 0.04479 | | | 1.02 333s 333s Nlocal: 1000 ave 1000 max 1000 min 333s Histogram: 1 0 0 0 0 0 0 0 0 0 333s Nghost: 1724 ave 1724 max 1724 min 333s Histogram: 1 0 0 0 0 0 0 0 0 0 333s Neighs: 21000 ave 21000 max 21000 min 333s Histogram: 1 0 0 0 0 0 0 0 0 0 333s 333s Total # of neighbors = 21000 333s Ave neighs/atom = 21 333s Neighbor list builds = 11 333s Dangerous builds = 0 333s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 333s using 1 OpenMP thread(s) per MPI task 333s Reading restart file ... 333s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 333s restoring atom style atomic from restart 338s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 338s 1 by 1 by 1 MPI processor grid 338s restoring pair style lj/cubic from restart 338s 1000 atoms 338s read_restart CPU = 0.000 seconds 338s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 338s Neighbor list info ... 338s update: every = 1 steps, delay = 0 steps, check = yes 338s max neighbors/atom: 2000, page size: 100000 338s master list distance cutoff = 1.7475372 338s ghost atom cutoff = 1.7475372 338s binsize = 0.87376862, bins = 8 12 12 338s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 338s (1) pair lj/cubic, perpetual 338s attributes: half, newton on 338s pair build: half/bin/atomonly/newton 338s stencil: half/bin/3d 338s bin: standard 338s Setting up Verlet run ... 338s Unit style : lj 338s Current step : 0 338s Time step : 0.001 338s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 338s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 338s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 338s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 338s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 338s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 338s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 338s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 338s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 338s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 338s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 338s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 338s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 338s Loop time of 4.54437 on 1 procs for 10000 steps with 1000 atoms 338s 338s Performance: 190125.198 tau/day, 2200.523 timesteps/s, 2.201 Matom-step/s 338s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 338s 338s MPI task timing breakdown: 338s Section | min time | avg time | max time |%varavg| %total 338s --------------------------------------------------------------- 338s Pair | 3.7017 | 3.7017 | 3.7017 | 0.0 | 81.46 338s Neigh | 0.084164 | 0.084164 | 0.084164 | 0.0 | 1.85 338s Comm | 0.091689 | 0.091689 | 0.091689 | 0.0 | 2.02 338s Output | 0.00050329 | 0.00050329 | 0.00050329 | 0.0 | 0.01 338s Modify | 0.61888 | 0.61888 | 0.61888 | 0.0 | 13.62 338s Other | | 0.04744 | | | 1.04 338s 338s Nlocal: 1000 ave 1000 max 1000 min 338s Histogram: 1 0 0 0 0 0 0 0 0 0 338s Nghost: 1724 ave 1724 max 1724 min 338s Histogram: 1 0 0 0 0 0 0 0 0 0 338s Neighs: 20654 ave 20654 max 20654 min 338s Histogram: 1 0 0 0 0 0 0 0 0 0 338s 338s Total # of neighbors = 20654 338s Ave neighs/atom = 20.654 338s Neighbor list builds = 94 338s Dangerous builds = 0 338s Total wall time: 0:00:13 338s run: OK 338s autopkgtest [00:11:45]: test hugo: -----------------------] 339s autopkgtest [00:11:46]: test hugo: - - - - - - - - - - results - - - - - - - - - - 339s hugo PASS 339s autopkgtest [00:11:46]: test command1: preparing testbed 496s autopkgtest [00:14:23]: testbed dpkg architecture: arm64 497s autopkgtest [00:14:24]: testbed apt version: 3.0.0 497s autopkgtest [00:14:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 497s autopkgtest [00:14:24]: testbed release detected to be: questing 498s autopkgtest [00:14:25]: updating testbed package index (apt update) 499s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 499s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 499s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 499s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 499s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [57.4 kB] 499s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [179 kB] 499s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2255 kB] 500s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [196 kB] 500s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [567 kB] 500s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [3024 B] 500s Fetched 3367 kB in 2s (2149 kB/s) 501s Reading package lists... 502s autopkgtest [00:14:29]: upgrading testbed (apt dist-upgrade and autopurge) 502s Reading package lists... 502s Building dependency tree... 502s Reading state information... 503s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 503s Starting 2 pkgProblemResolver with broken count: 0 503s Done 504s Entering ResolveByKeep 504s 504s Calculating upgrade... 505s The following packages will be upgraded: 505s dpkg dpkg-dev libdpkg-perl libzstd1 zstd 505s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 505s Need to get 3549 kB of archives. 505s After this operation, 132 kB of additional disk space will be used. 505s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 dpkg arm64 1.22.18ubuntu3 [1288 kB] 506s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 libzstd1 arm64 1.5.7+dfsg-1 [283 kB] 506s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 dpkg-dev all 1.22.18ubuntu3 [1089 kB] 506s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 libdpkg-perl all 1.22.18ubuntu3 [281 kB] 506s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 zstd arm64 1.5.7+dfsg-1 [607 kB] 506s Fetched 3549 kB in 1s (4860 kB/s) 507s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 507s Preparing to unpack .../dpkg_1.22.18ubuntu3_arm64.deb ... 507s Unpacking dpkg (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 507s Setting up dpkg (1.22.18ubuntu3) ... 508s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 508s Preparing to unpack .../libzstd1_1.5.7+dfsg-1_arm64.deb ... 508s Unpacking libzstd1:arm64 (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 508s Setting up libzstd1:arm64 (1.5.7+dfsg-1) ... 508s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 508s Preparing to unpack .../dpkg-dev_1.22.18ubuntu3_all.deb ... 508s Unpacking dpkg-dev (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 508s Preparing to unpack .../libdpkg-perl_1.22.18ubuntu3_all.deb ... 508s Unpacking libdpkg-perl (1.22.18ubuntu3) over (1.22.18ubuntu2) ... 508s Preparing to unpack .../zstd_1.5.7+dfsg-1_arm64.deb ... 508s Unpacking zstd (1.5.7+dfsg-1) over (1.5.6+dfsg-2) ... 508s Setting up libdpkg-perl (1.22.18ubuntu3) ... 508s Setting up zstd (1.5.7+dfsg-1) ... 508s Setting up dpkg-dev (1.22.18ubuntu3) ... 508s Processing triggers for man-db (2.13.0-1) ... 511s Processing triggers for libc-bin (2.41-6ubuntu1) ... 512s Reading package lists... 512s Building dependency tree... 512s Reading state information... 513s Starting pkgProblemResolver with broken count: 0 513s Starting 2 pkgProblemResolver with broken count: 0 513s Done 513s Solving dependencies... 514s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 514s autopkgtest [00:14:41]: rebooting testbed after setup commands that affected boot 548s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 559s Reading package lists... 559s Building dependency tree... 559s Reading state information... 559s Starting pkgProblemResolver with broken count: 0 559s Starting 2 pkgProblemResolver with broken count: 0 559s Done 560s The following NEW packages will be installed: 560s autoconf automake autotools-dev cpp-14 cpp-14-aarch64-linux-gnu 560s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14 560s gcc-14-aarch64-linux-gnu gfortran-14 gfortran-14-aarch64-linux-gnu libaec0 560s libamd-comgr2 libamdhip64-5 libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 560s libdouble-conversion3 libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 560s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 560s libfftw3-double3 libfontconfig1 libgbm1 libgcc-14-dev libgfortran-14-dev 560s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 560s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 560s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 libibmad5 560s libibumad3 libibverbs-dev libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 560s libjs-jquery libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev 560s liblammps0t64 liblapack3 liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 560s libmpc3 libmunge2 libnetcdf22 libnl-3-dev libnl-route-3-dev libnuma-dev 560s libogg0 libopengl0 libopenmpi-dev libopenmpi40 libpciaccess0 libpixman-1-0 560s libpmix-dev libpmix2t64 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 560s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 560s libtheoraenc1 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 libvoro++1 560s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 560s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 560s libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 560s libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin mpi-default-dev 560s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 560s x11-common zlib1g-dev 560s 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded. 560s Need to get 185 MB of archives. 560s After this operation, 743 MB of additional disk space will be used. 560s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 m4 arm64 1.4.19-7 [244 kB] 561s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 autoconf all 2.72-3ubuntu1 [383 kB] 561s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 autotools-dev all 20220109.1 [44.9 kB] 561s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 automake all 1:1.17-3ubuntu1 [572 kB] 561s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 libisl23 arm64 0.27-1 [676 kB] 561s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 561s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [10.6 MB] 561s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 cpp-14 arm64 14.2.0-19ubuntu2 [1026 B] 561s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 561s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 561s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 561s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libcc1-0 arm64 15-20250404-0ubuntu1 [49.1 kB] 561s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 561s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libitm1 arm64 15-20250404-0ubuntu1 [27.8 kB] 561s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libasan8 arm64 15-20250404-0ubuntu1 [2922 kB] 561s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 liblsan0 arm64 15-20250404-0ubuntu1 [1318 kB] 562s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libtsan2 arm64 15-20250404-0ubuntu1 [2692 kB] 562s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libubsan1 arm64 15-20250404-0ubuntu1 [1177 kB] 562s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libhwasan0 arm64 15-20250404-0ubuntu1 [1640 kB] 562s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libgcc-14-dev arm64 14.2.0-19ubuntu2 [2593 kB] 562s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [20.9 MB] 562s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 gcc-14 arm64 14.2.0-19ubuntu2 [529 kB] 562s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 562s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran-14-dev arm64 14.2.0-19ubuntu2 [498 kB] 562s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-19ubuntu2 [11.4 MB] 563s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 gfortran-14 arm64 14.2.0-19ubuntu2 [14.2 kB] 563s Get:27 http://ftpmaster.internal/ubuntu questing/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 563s Get:28 http://ftpmaster.internal/ubuntu questing/universe arm64 libllvm17t64 arm64 1:17.0.6-21 [24.9 MB] 563s Get:29 http://ftpmaster.internal/ubuntu questing/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 564s Get:30 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 564s Get:31 http://ftpmaster.internal/ubuntu questing/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 564s Get:32 http://ftpmaster.internal/ubuntu questing/universe arm64 libamdhip64-5 arm64 5.7.1-5build1 [9707 kB] 564s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 564s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 564s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 564s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 564s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 564s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 564s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 564s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 564s Get:41 http://ftpmaster.internal/ubuntu questing/universe arm64 libdouble-conversion3 arm64 3.3.1-1 [38.8 kB] 564s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 564s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10 [62.0 kB] 564s Get:44 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 564s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10 [14.7 kB] 564s Get:46 http://ftpmaster.internal/ubuntu questing/main arm64 libevent-dev arm64 2.1.12-stable-10 [283 kB] 564s Get:47 http://ftpmaster.internal/ubuntu questing/main arm64 librdmacm1t64 arm64 56.0-4ubuntu1 [71.4 kB] 564s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 libfabric1 arm64 1.17.0-3.1 [542 kB] 564s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 564s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 libwayland-server0 arm64 1.23.1-3 [36.1 kB] 564s Get:51 http://ftpmaster.internal/ubuntu questing/main arm64 libx11-xcb1 arm64 2:1.8.10-2 [8020 B] 564s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [7606 B] 564s Get:53 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-present0 arm64 1.17.0-2 [6224 B] 564s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-randr0 arm64 1.17.0-2 [18.5 kB] 564s Get:55 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-sync1 arm64 1.17.0-2 [9688 B] 564s Get:56 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [10.6 kB] 564s Get:57 http://ftpmaster.internal/ubuntu questing/main arm64 libxshmfence1 arm64 1.3-1build5 [4938 B] 564s Get:58 http://ftpmaster.internal/ubuntu questing/main arm64 mesa-libgallium arm64 25.0.3-1ubuntu2 [9455 kB] 564s Get:59 http://ftpmaster.internal/ubuntu questing/main arm64 libgbm1 arm64 25.0.3-1ubuntu2 [33.7 kB] 564s Get:60 http://ftpmaster.internal/ubuntu questing/main arm64 libvulkan1 arm64 1.4.304.0-1 [158 kB] 564s Get:61 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1-mesa-dri arm64 25.0.3-1ubuntu2 [35.4 kB] 564s Get:62 http://ftpmaster.internal/ubuntu questing/main arm64 libglvnd0 arm64 1.7.0-1build1 [60.6 kB] 564s Get:63 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-glx0 arm64 1.17.0-2 [25.5 kB] 564s Get:64 http://ftpmaster.internal/ubuntu questing/main arm64 libxxf86vm1 arm64 1:1.1.4-1build4 [9130 B] 564s Get:65 http://ftpmaster.internal/ubuntu questing/main arm64 libglx-mesa0 arm64 25.0.3-1ubuntu2 [151 kB] 564s Get:66 http://ftpmaster.internal/ubuntu questing/main arm64 libglx0 arm64 1.7.0-1build1 [33.2 kB] 564s Get:67 http://ftpmaster.internal/ubuntu questing/main arm64 libgl1 arm64 1.7.0-1build1 [106 kB] 564s Get:68 http://ftpmaster.internal/ubuntu questing/universe arm64 libgl2ps1.4 arm64 1.4.2+dfsg1-2build1 [40.6 kB] 564s Get:69 http://ftpmaster.internal/ubuntu questing/universe arm64 libglew2.2 arm64 2.2.0-4build1 [191 kB] 564s Get:70 http://ftpmaster.internal/ubuntu questing/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 565s Get:71 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 565s Get:72 http://ftpmaster.internal/ubuntu questing/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 565s Get:73 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 565s Get:74 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 565s Get:75 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 565s Get:76 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 565s Get:77 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 565s Get:78 http://ftpmaster.internal/ubuntu questing/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 565s Get:79 http://ftpmaster.internal/ubuntu questing/universe arm64 libkim-api2 arm64 2.3.0-1ubuntu1 [565 kB] 565s Get:80 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 565s Get:81 http://ftpmaster.internal/ubuntu questing/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 565s Get:82 http://ftpmaster.internal/ubuntu questing/universe arm64 libmunge2 arm64 0.5.16-1 [15.2 kB] 565s Get:83 http://ftpmaster.internal/ubuntu questing/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 565s Get:84 http://ftpmaster.internal/ubuntu questing/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 565s Get:85 http://ftpmaster.internal/ubuntu questing/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 565s Get:86 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-plugins arm64 2.12.0-1 [15.9 kB] 565s Get:87 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix2t64 arm64 5.0.6-5 [666 kB] 565s Get:88 http://ftpmaster.internal/ubuntu questing/main arm64 libibumad3 arm64 56.0-4ubuntu1 [31.3 kB] 565s Get:89 http://ftpmaster.internal/ubuntu questing/main arm64 libibmad5 arm64 56.0-4ubuntu1 [44.1 kB] 565s Get:90 http://ftpmaster.internal/ubuntu questing/universe arm64 libucx0 arm64 1.18.1+ds-2 [1161 kB] 565s Get:91 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi40 arm64 5.0.7-1 [2419 kB] 565s Get:92 http://ftpmaster.internal/ubuntu questing/universe arm64 libpnetcdf6 arm64 1.14.0-2 [971 kB] 565s Get:93 http://ftpmaster.internal/ubuntu questing/universe arm64 libvoro++1 arm64 0.5+revert-to-0.4.6+dfsg1-1 [101 kB] 565s Get:94 http://ftpmaster.internal/ubuntu questing/main arm64 libogg0 arm64 1.3.5-3build1 [22.6 kB] 565s Get:95 http://ftpmaster.internal/ubuntu questing/main arm64 libopengl0 arm64 1.7.0-1build1 [35.1 kB] 565s Get:96 http://ftpmaster.internal/ubuntu questing/universe arm64 proj-data all 9.5.1-1 [7924 kB] 565s Get:97 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 565s Get:98 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 565s Get:99 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 565s Get:100 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 565s Get:101 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 565s Get:102 http://ftpmaster.internal/ubuntu questing/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 566s Get:103 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 566s Get:104 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 566s Get:105 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 566s Get:106 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 566s Get:107 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoradec1 arm64 1.2.0~alpha1+dfsg-6 [57.1 kB] 566s Get:108 http://ftpmaster.internal/ubuntu questing/main arm64 libtheoraenc1 arm64 1.2.0~alpha1+dfsg-6 [107 kB] 566s Get:109 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 566s Get:110 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 566s Get:111 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 566s Get:112 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 566s Get:113 http://ftpmaster.internal/ubuntu questing/universe arm64 libvtk9.3 arm64 9.3.0+dfsg1-4ubuntu1 [24.0 MB] 568s Get:114 http://ftpmaster.internal/ubuntu questing/universe arm64 liblammps0t64 arm64 20240207+dfsg-3build3 [6834 kB] 568s Get:115 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-common all 5.0.7-1 [97.9 kB] 568s Get:116 http://ftpmaster.internal/ubuntu questing/main arm64 libnl-3-dev arm64 3.7.0-2 [105 kB] 568s Get:117 http://ftpmaster.internal/ubuntu questing/main arm64 libnl-route-3-dev arm64 3.7.0-2 [226 kB] 569s Get:118 http://ftpmaster.internal/ubuntu questing/main arm64 libibverbs-dev arm64 56.0-4ubuntu1 [705 kB] 569s Get:119 http://ftpmaster.internal/ubuntu questing/main arm64 libnuma-dev arm64 2.0.18-1build1 [39.6 kB] 569s Get:120 http://ftpmaster.internal/ubuntu questing/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 569s Get:121 http://ftpmaster.internal/ubuntu questing/main arm64 libltdl-dev arm64 2.5.4-4 [173 kB] 569s Get:122 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc-dev arm64 2.12.0-1 [266 kB] 569s Get:123 http://ftpmaster.internal/ubuntu questing/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 569s Get:124 http://ftpmaster.internal/ubuntu questing/universe arm64 libpmix-dev arm64 5.0.6-5 [4055 kB] 569s Get:125 http://ftpmaster.internal/ubuntu questing/universe arm64 openmpi-bin arm64 5.0.7-1 [195 kB] 569s Get:126 http://ftpmaster.internal/ubuntu questing/universe arm64 libopenmpi-dev arm64 5.0.7-1 [1085 kB] 569s Get:127 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-dev arm64 1.18 [3324 B] 569s Get:128 http://ftpmaster.internal/ubuntu questing/universe arm64 liblammps-dev arm64 20240207+dfsg-3build3 [112 kB] 569s Get:129 http://ftpmaster.internal/ubuntu questing/universe arm64 mpi-default-bin arm64 1.18 [2510 B] 569s Get:130 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-lammps arm64 20240207+dfsg-3build3 [70.5 kB] 570s Fetched 185 MB in 9s (21.0 MB/s) 570s Selecting previously unselected package m4. 570s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 570s Preparing to unpack .../000-m4_1.4.19-7_arm64.deb ... 570s Unpacking m4 (1.4.19-7) ... 570s Selecting previously unselected package autoconf. 570s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 570s Unpacking autoconf (2.72-3ubuntu1) ... 570s Selecting previously unselected package autotools-dev. 570s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 570s Unpacking autotools-dev (20220109.1) ... 570s Selecting previously unselected package automake. 570s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 570s Unpacking automake (1:1.17-3ubuntu1) ... 570s Selecting previously unselected package libisl23:arm64. 570s Preparing to unpack .../004-libisl23_0.27-1_arm64.deb ... 570s Unpacking libisl23:arm64 (0.27-1) ... 571s Selecting previously unselected package libmpc3:arm64. 571s Preparing to unpack .../005-libmpc3_1.3.1-1build2_arm64.deb ... 571s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 571s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 571s Preparing to unpack .../006-cpp-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 571s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 571s Selecting previously unselected package cpp-14. 571s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_arm64.deb ... 571s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 571s Selecting previously unselected package fonts-dejavu-mono. 571s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 571s Unpacking fonts-dejavu-mono (2.37-8) ... 571s Selecting previously unselected package fonts-dejavu-core. 571s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 571s Unpacking fonts-dejavu-core (2.37-8) ... 571s Selecting previously unselected package fontconfig-config. 571s Preparing to unpack .../010-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 572s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 572s Selecting previously unselected package libcc1-0:arm64. 572s Preparing to unpack .../011-libcc1-0_15-20250404-0ubuntu1_arm64.deb ... 572s Unpacking libcc1-0:arm64 (15-20250404-0ubuntu1) ... 572s Selecting previously unselected package libgomp1:arm64. 572s Preparing to unpack .../012-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 572s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 572s Selecting previously unselected package libitm1:arm64. 572s Preparing to unpack .../013-libitm1_15-20250404-0ubuntu1_arm64.deb ... 572s Unpacking libitm1:arm64 (15-20250404-0ubuntu1) ... 572s Selecting previously unselected package libasan8:arm64. 572s Preparing to unpack .../014-libasan8_15-20250404-0ubuntu1_arm64.deb ... 572s Unpacking libasan8:arm64 (15-20250404-0ubuntu1) ... 572s Selecting previously unselected package liblsan0:arm64. 572s Preparing to unpack .../015-liblsan0_15-20250404-0ubuntu1_arm64.deb ... 572s Unpacking liblsan0:arm64 (15-20250404-0ubuntu1) ... 572s Selecting previously unselected package libtsan2:arm64. 572s Preparing to unpack .../016-libtsan2_15-20250404-0ubuntu1_arm64.deb ... 572s Unpacking libtsan2:arm64 (15-20250404-0ubuntu1) ... 572s Selecting previously unselected package libubsan1:arm64. 572s Preparing to unpack .../017-libubsan1_15-20250404-0ubuntu1_arm64.deb ... 572s Unpacking libubsan1:arm64 (15-20250404-0ubuntu1) ... 572s Selecting previously unselected package libhwasan0:arm64. 572s Preparing to unpack .../018-libhwasan0_15-20250404-0ubuntu1_arm64.deb ... 572s Unpacking libhwasan0:arm64 (15-20250404-0ubuntu1) ... 572s Selecting previously unselected package libgcc-14-dev:arm64. 572s Preparing to unpack .../019-libgcc-14-dev_14.2.0-19ubuntu2_arm64.deb ... 572s Unpacking libgcc-14-dev:arm64 (14.2.0-19ubuntu2) ... 572s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 573s Preparing to unpack .../020-gcc-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 573s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 573s Selecting previously unselected package gcc-14. 573s Preparing to unpack .../021-gcc-14_14.2.0-19ubuntu2_arm64.deb ... 573s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 573s Selecting previously unselected package libgfortran5:arm64. 573s Preparing to unpack .../022-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 573s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 573s Selecting previously unselected package libgfortran-14-dev:arm64. 573s Preparing to unpack .../023-libgfortran-14-dev_14.2.0-19ubuntu2_arm64.deb ... 573s Unpacking libgfortran-14-dev:arm64 (14.2.0-19ubuntu2) ... 573s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 573s Preparing to unpack .../024-gfortran-14-aarch64-linux-gnu_14.2.0-19ubuntu2_arm64.deb ... 573s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 573s Selecting previously unselected package gfortran-14. 573s Preparing to unpack .../025-gfortran-14_14.2.0-19ubuntu2_arm64.deb ... 573s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 573s Selecting previously unselected package libaec0:arm64. 574s Preparing to unpack .../026-libaec0_1.1.3-1_arm64.deb ... 574s Unpacking libaec0:arm64 (1.1.3-1) ... 574s Selecting previously unselected package libllvm17t64:arm64. 574s Preparing to unpack .../027-libllvm17t64_1%3a17.0.6-21_arm64.deb ... 574s Unpacking libllvm17t64:arm64 (1:17.0.6-21) ... 574s Selecting previously unselected package libamd-comgr2:arm64. 574s Preparing to unpack .../028-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 574s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 575s Selecting previously unselected package libhsakmt1:arm64. 575s Preparing to unpack .../029-libhsakmt1_5.7.0-1build1_arm64.deb ... 575s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 575s Selecting previously unselected package libhsa-runtime64-1. 575s Preparing to unpack .../030-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 575s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 575s Selecting previously unselected package libamdhip64-5. 575s Preparing to unpack .../031-libamdhip64-5_5.7.1-5build1_arm64.deb ... 575s Unpacking libamdhip64-5 (5.7.1-5build1) ... 575s Selecting previously unselected package libblas3:arm64. 575s Preparing to unpack .../032-libblas3_3.12.1-2_arm64.deb ... 575s Unpacking libblas3:arm64 (3.12.1-2) ... 575s Selecting previously unselected package libfontconfig1:arm64. 575s Preparing to unpack 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575s Unpacking libcairo2:arm64 (1.18.4-1) ... 575s Selecting previously unselected package libdeflate0:arm64. 575s Preparing to unpack .../039-libdeflate0_1.23-1_arm64.deb ... 575s Unpacking libdeflate0:arm64 (1.23-1) ... 575s Selecting previously unselected package libdouble-conversion3:arm64. 576s Preparing to unpack .../040-libdouble-conversion3_3.3.1-1_arm64.deb ... 576s Unpacking libdouble-conversion3:arm64 (3.3.1-1) ... 576s Selecting previously unselected package libevent-2.1-7t64:arm64. 576s Preparing to unpack .../041-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... 576s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 576s Selecting previously unselected package libevent-extra-2.1-7t64:arm64. 576s Preparing to unpack .../042-libevent-extra-2.1-7t64_2.1.12-stable-10_arm64.deb ... 576s Unpacking libevent-extra-2.1-7t64:arm64 (2.1.12-stable-10) ... 576s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 576s Preparing to unpack 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libfftw3-double3:arm64. 576s Preparing to unpack .../048-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 576s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 576s Selecting previously unselected package libwayland-server0:arm64. 576s Preparing to unpack .../049-libwayland-server0_1.23.1-3_arm64.deb ... 576s Unpacking libwayland-server0:arm64 (1.23.1-3) ... 576s Selecting previously unselected package libx11-xcb1:arm64. 576s Preparing to unpack .../050-libx11-xcb1_2%3a1.8.10-2_arm64.deb ... 576s Unpacking libx11-xcb1:arm64 (2:1.8.10-2) ... 576s Selecting previously unselected package libxcb-dri3-0:arm64. 576s Preparing to unpack .../051-libxcb-dri3-0_1.17.0-2_arm64.deb ... 576s Unpacking libxcb-dri3-0:arm64 (1.17.0-2) ... 576s Selecting previously unselected package libxcb-present0:arm64. 576s Preparing to unpack .../052-libxcb-present0_1.17.0-2_arm64.deb ... 576s Unpacking libxcb-present0:arm64 (1.17.0-2) ... 576s Selecting previously unselected package libxcb-randr0:arm64. 576s Preparing to unpack .../053-libxcb-randr0_1.17.0-2_arm64.deb ... 576s Unpacking libxcb-randr0:arm64 (1.17.0-2) ... 576s Selecting previously unselected package libxcb-sync1:arm64. 576s Preparing to unpack .../054-libxcb-sync1_1.17.0-2_arm64.deb ... 576s Unpacking libxcb-sync1:arm64 (1.17.0-2) ... 576s Selecting previously unselected package libxcb-xfixes0:arm64. 576s Preparing to unpack .../055-libxcb-xfixes0_1.17.0-2_arm64.deb ... 576s Unpacking libxcb-xfixes0:arm64 (1.17.0-2) ... 576s Selecting previously unselected package libxshmfence1:arm64. 576s Preparing to unpack .../056-libxshmfence1_1.3-1build5_arm64.deb ... 576s Unpacking libxshmfence1:arm64 (1.3-1build5) ... 576s Selecting previously unselected package mesa-libgallium:arm64. 577s Preparing to unpack .../057-mesa-libgallium_25.0.3-1ubuntu2_arm64.deb ... 577s Unpacking mesa-libgallium:arm64 (25.0.3-1ubuntu2) ... 577s Selecting previously unselected package libgbm1:arm64. 577s Preparing to unpack .../058-libgbm1_25.0.3-1ubuntu2_arm64.deb ... 577s Unpacking libgbm1:arm64 (25.0.3-1ubuntu2) ... 577s Selecting previously unselected package libvulkan1:arm64. 577s Preparing to unpack .../059-libvulkan1_1.4.304.0-1_arm64.deb ... 577s Unpacking libvulkan1:arm64 (1.4.304.0-1) ... 577s Selecting previously unselected package libgl1-mesa-dri:arm64. 577s Preparing to unpack .../060-libgl1-mesa-dri_25.0.3-1ubuntu2_arm64.deb ... 577s Unpacking libgl1-mesa-dri:arm64 (25.0.3-1ubuntu2) ... 577s Selecting previously unselected package libglvnd0:arm64. 577s Preparing to unpack .../061-libglvnd0_1.7.0-1build1_arm64.deb ... 577s Unpacking libglvnd0:arm64 (1.7.0-1build1) ... 577s Selecting previously unselected package libxcb-glx0:arm64. 577s Preparing to unpack .../062-libxcb-glx0_1.17.0-2_arm64.deb ... 577s Unpacking libxcb-glx0:arm64 (1.17.0-2) ... 577s Selecting previously unselected package libxxf86vm1:arm64. 577s Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1build4_arm64.deb ... 577s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build4) ... 577s Selecting previously unselected package libglx-mesa0:arm64. 577s Preparing to unpack .../064-libglx-mesa0_25.0.3-1ubuntu2_arm64.deb ... 577s Unpacking libglx-mesa0:arm64 (25.0.3-1ubuntu2) ... 577s Selecting previously unselected package libglx0:arm64. 577s Preparing to unpack .../065-libglx0_1.7.0-1build1_arm64.deb ... 577s Unpacking libglx0:arm64 (1.7.0-1build1) ... 577s Selecting previously unselected package libgl1:arm64. 577s Preparing to unpack .../066-libgl1_1.7.0-1build1_arm64.deb ... 577s Unpacking libgl1:arm64 (1.7.0-1build1) ... 577s Selecting previously unselected package libgl2ps1.4. 577s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2build1_arm64.deb ... 577s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 577s Selecting previously unselected package libglew2.2:arm64. 577s Preparing to unpack .../068-libglew2.2_2.2.0-4build1_arm64.deb ... 577s Unpacking libglew2.2:arm64 (2.2.0-4build1) ... 578s Selecting previously unselected package libsz2:arm64. 578s Preparing to unpack .../069-libsz2_1.1.3-1_arm64.deb ... 578s Unpacking libsz2:arm64 (1.1.3-1) ... 578s Selecting previously unselected package libhdf5-310:arm64. 578s Preparing to unpack .../070-libhdf5-310_1.14.5+repack-3_arm64.deb ... 578s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 578s Selecting previously unselected package libhdf5-hl-310:arm64. 578s Preparing to unpack .../071-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 578s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 578s Selecting previously unselected package libhwloc15:arm64. 578s Preparing to unpack .../072-libhwloc15_2.12.0-1_arm64.deb ... 578s Unpacking libhwloc15:arm64 (2.12.0-1) ... 578s Selecting previously unselected package libjpeg-turbo8:arm64. 578s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 578s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 578s Selecting previously unselected package libjpeg8:arm64. 578s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 578s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 579s Selecting previously unselected package libjs-jquery. 579s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 579s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 579s Selecting previously unselected package libjs-jquery-ui. 579s Preparing to unpack .../076-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 579s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 579s Selecting previously unselected package libjsoncpp26:arm64. 579s Preparing to unpack .../077-libjsoncpp26_1.9.6-3_arm64.deb ... 579s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 579s Selecting previously unselected package libkim-api2:arm64. 579s Preparing to unpack .../078-libkim-api2_2.3.0-1ubuntu1_arm64.deb ... 579s Unpacking libkim-api2:arm64 (2.3.0-1ubuntu1) ... 579s Selecting previously unselected package liblapack3:arm64. 579s Preparing to unpack .../079-liblapack3_3.12.1-2_arm64.deb ... 579s Unpacking liblapack3:arm64 (3.12.1-2) ... 579s Selecting previously unselected package libnetcdf22:arm64. 579s Preparing to unpack .../080-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 579s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 579s Selecting previously unselected package libmunge2:arm64. 579s Preparing to unpack .../081-libmunge2_0.5.16-1_arm64.deb ... 579s Unpacking libmunge2:arm64 (0.5.16-1) ... 579s Selecting previously unselected package libpciaccess0:arm64. 579s Preparing to unpack .../082-libpciaccess0_0.17-3build1_arm64.deb ... 579s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 579s Selecting previously unselected package libxnvctrl0:arm64. 580s Preparing to unpack .../083-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 580s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 580s Selecting previously unselected package ocl-icd-libopencl1:arm64. 580s Preparing to unpack .../084-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 580s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 580s Selecting previously unselected package libhwloc-plugins:arm64. 580s Preparing to unpack .../085-libhwloc-plugins_2.12.0-1_arm64.deb ... 580s Unpacking libhwloc-plugins:arm64 (2.12.0-1) ... 580s Selecting previously unselected package libpmix2t64:arm64. 580s Preparing to unpack .../086-libpmix2t64_5.0.6-5_arm64.deb ... 580s Unpacking libpmix2t64:arm64 (5.0.6-5) ... 580s Selecting previously unselected package libibumad3:arm64. 580s Preparing to unpack .../087-libibumad3_56.0-4ubuntu1_arm64.deb ... 580s Unpacking libibumad3:arm64 (56.0-4ubuntu1) ... 580s Selecting previously unselected package libibmad5:arm64. 580s Preparing to unpack .../088-libibmad5_56.0-4ubuntu1_arm64.deb ... 580s Unpacking libibmad5:arm64 (56.0-4ubuntu1) ... 580s Selecting previously unselected package libucx0:arm64. 580s Preparing to unpack .../089-libucx0_1.18.1+ds-2_arm64.deb ... 580s Unpacking libucx0:arm64 (1.18.1+ds-2) ... 580s Selecting previously unselected package libopenmpi40:arm64. 580s Preparing to unpack .../090-libopenmpi40_5.0.7-1_arm64.deb ... 580s Unpacking libopenmpi40:arm64 (5.0.7-1) ... 580s Selecting previously unselected package libpnetcdf6:arm64. 580s Preparing to unpack .../091-libpnetcdf6_1.14.0-2_arm64.deb ... 580s Unpacking libpnetcdf6:arm64 (1.14.0-2) ... 580s Selecting previously unselected package libvoro++1. 580s Preparing to unpack .../092-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_arm64.deb ... 580s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 580s Selecting previously unselected package libogg0:arm64. 580s Preparing to unpack .../093-libogg0_1.3.5-3build1_arm64.deb ... 580s Unpacking libogg0:arm64 (1.3.5-3build1) ... 580s Selecting previously unselected package libopengl0:arm64. 580s Preparing to unpack .../094-libopengl0_1.7.0-1build1_arm64.deb ... 580s Unpacking libopengl0:arm64 (1.7.0-1build1) ... 580s Selecting previously unselected package proj-data. 580s Preparing to unpack .../095-proj-data_9.5.1-1_all.deb ... 580s Unpacking proj-data (9.5.1-1) ... 581s Selecting previously unselected package libjbig0:arm64. 581s Preparing to unpack .../096-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 581s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 581s Selecting previously unselected package liblerc4:arm64. 581s Preparing to unpack .../097-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 581s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 581s Selecting previously unselected package libsharpyuv0:arm64. 581s Preparing to unpack .../098-libsharpyuv0_1.5.0-0.1_arm64.deb ... 581s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 581s Selecting previously unselected package libwebp7:arm64. 581s Preparing to unpack .../099-libwebp7_1.5.0-0.1_arm64.deb ... 581s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 581s Selecting previously unselected package libtiff6:arm64. 581s Preparing to unpack .../100-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 581s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 581s Selecting previously unselected package libproj25:arm64. 581s Preparing to unpack .../101-libproj25_9.5.1-1_arm64.deb ... 581s Unpacking libproj25:arm64 (9.5.1-1) ... 581s Selecting previously unselected package libtbbbind-2-5:arm64. 581s Preparing to unpack .../102-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 581s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 581s Selecting previously unselected package libtbbmalloc2:arm64. 581s Preparing to unpack .../103-libtbbmalloc2_2022.0.0-2_arm64.deb ... 581s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 581s Selecting previously unselected package libtbb12:arm64. 581s Preparing to unpack .../104-libtbb12_2022.0.0-2_arm64.deb ... 581s Unpacking libtbb12:arm64 (2022.0.0-2) ... 581s Selecting previously unselected package libtcl8.6:arm64. 581s Preparing to unpack .../105-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 581s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 581s Selecting previously unselected package libtheoradec1:arm64. 581s Preparing to unpack .../106-libtheoradec1_1.2.0~alpha1+dfsg-6_arm64.deb ... 581s Unpacking libtheoradec1:arm64 (1.2.0~alpha1+dfsg-6) ... 581s Selecting previously unselected package libtheoraenc1:arm64. 581s Preparing to unpack .../107-libtheoraenc1_1.2.0~alpha1+dfsg-6_arm64.deb ... 581s Unpacking libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 581s Selecting previously unselected package libxft2:arm64. 581s Preparing to unpack .../108-libxft2_2.3.6-1build1_arm64.deb ... 581s Unpacking libxft2:arm64 (2.3.6-1build1) ... 581s Selecting previously unselected package x11-common. 582s Preparing to unpack .../109-x11-common_1%3a7.7+23ubuntu4_all.deb ... 582s Unpacking x11-common (1:7.7+23ubuntu4) ... 582s Selecting previously unselected package libxss1:arm64. 582s Preparing to unpack .../110-libxss1_1%3a1.2.3-1build3_arm64.deb ... 582s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 582s Selecting previously unselected package libtk8.6:arm64. 582s Preparing to unpack .../111-libtk8.6_8.6.16-1_arm64.deb ... 582s Unpacking libtk8.6:arm64 (8.6.16-1) ... 582s Selecting previously unselected package libvtk9.3:arm64. 582s Preparing to unpack .../112-libvtk9.3_9.3.0+dfsg1-4ubuntu1_arm64.deb ... 582s Unpacking libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 583s Selecting previously unselected package liblammps0t64:arm64. 583s Preparing to unpack .../113-liblammps0t64_20240207+dfsg-3build3_arm64.deb ... 583s Unpacking liblammps0t64:arm64 (20240207+dfsg-3build3) ... 583s Selecting previously unselected package openmpi-common. 583s Preparing to unpack .../114-openmpi-common_5.0.7-1_all.deb ... 583s Unpacking openmpi-common (5.0.7-1) ... 583s Selecting previously unselected package libnl-3-dev:arm64. 583s Preparing to unpack .../115-libnl-3-dev_3.7.0-2_arm64.deb ... 583s Unpacking libnl-3-dev:arm64 (3.7.0-2) ... 583s Selecting previously unselected package libnl-route-3-dev:arm64. 583s Preparing to unpack .../116-libnl-route-3-dev_3.7.0-2_arm64.deb ... 583s Unpacking libnl-route-3-dev:arm64 (3.7.0-2) ... 583s Selecting previously unselected package libibverbs-dev:arm64. 583s Preparing to unpack .../117-libibverbs-dev_56.0-4ubuntu1_arm64.deb ... 583s Unpacking libibverbs-dev:arm64 (56.0-4ubuntu1) ... 583s Selecting previously unselected package libnuma-dev:arm64. 583s Preparing to unpack .../118-libnuma-dev_2.0.18-1build1_arm64.deb ... 583s Unpacking libnuma-dev:arm64 (2.0.18-1build1) ... 583s Selecting previously unselected package libltdl7:arm64. 583s Preparing to unpack .../119-libltdl7_2.5.4-4_arm64.deb ... 583s Unpacking libltdl7:arm64 (2.5.4-4) ... 583s Selecting previously unselected package libltdl-dev:arm64. 584s Preparing to unpack .../120-libltdl-dev_2.5.4-4_arm64.deb ... 584s Unpacking libltdl-dev:arm64 (2.5.4-4) ... 584s Selecting previously unselected package libhwloc-dev:arm64. 584s Preparing to unpack .../121-libhwloc-dev_2.12.0-1_arm64.deb ... 584s Unpacking libhwloc-dev:arm64 (2.12.0-1) ... 584s Selecting previously unselected package zlib1g-dev:arm64. 584s Preparing to unpack .../122-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 584s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 584s Selecting previously unselected package libpmix-dev:arm64. 584s Preparing to unpack .../123-libpmix-dev_5.0.6-5_arm64.deb ... 584s Unpacking libpmix-dev:arm64 (5.0.6-5) ... 584s Selecting previously unselected package openmpi-bin. 584s Preparing to unpack .../124-openmpi-bin_5.0.7-1_arm64.deb ... 584s Unpacking openmpi-bin (5.0.7-1) ... 584s Selecting previously unselected package libopenmpi-dev:arm64. 584s Preparing to unpack .../125-libopenmpi-dev_5.0.7-1_arm64.deb ... 584s Unpacking libopenmpi-dev:arm64 (5.0.7-1) ... 584s Selecting previously unselected package mpi-default-dev. 584s Preparing to unpack .../126-mpi-default-dev_1.18_arm64.deb ... 584s Unpacking mpi-default-dev (1.18) ... 584s Selecting previously unselected package liblammps-dev. 584s Preparing to unpack .../127-liblammps-dev_20240207+dfsg-3build3_arm64.deb ... 584s 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libxxf86vm1:arm64 (1:1.1.4-1build4) ... 585s Setting up libnuma-dev:arm64 (2.0.18-1build1) ... 585s Setting up libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 585s Setting up libxcb-present0:arm64 (1.17.0-2) ... 585s Setting up libtheoraenc1:arm64 (1.2.0~alpha1+dfsg-6) ... 585s Setting up autotools-dev (20220109.1) ... 585s Setting up libblas3:arm64 (3.12.1-2) ... 585s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 585s Setting up libmunge2:arm64 (0.5.16-1) ... 585s Setting up libllvm17t64:arm64 (1:17.0.6-21) ... 585s Setting up libxcb-sync1:arm64 (1.17.0-2) ... 585s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 585s Setting up fonts-dejavu-mono (2.37-8) ... 585s Setting up libhwloc15:arm64 (2.12.0-1) ... 585s Setting up libmpc3:arm64 (1.3.1-1build2) ... 585s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 585s Setting up fonts-dejavu-core (2.37-8) ... 585s Setting up 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(2.2.0-4build1) ... 585s Setting up cpp-14 (14.2.0-19ubuntu2) ... 585s Setting up gcc-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 585s Setting up libucx0:arm64 (1.18.1+ds-2) ... 585s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 585s Setting up gcc-14 (14.2.0-19ubuntu2) ... 585s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-19ubuntu2) ... 585s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 585s Setting up libopenmpi40:arm64 (5.0.7-1) ... 585s Setting up libpnetcdf6:arm64 (1.14.0-2) ... 585s Setting up libvtk9.3:arm64 (9.3.0+dfsg1-4ubuntu1) ... 585s Setting up openmpi-bin (5.0.7-1) ... 585s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 585s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 585s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 585s Setting up mpi-default-bin (1.18) ... 585s Setting up liblammps0t64:arm64 (20240207+dfsg-3build3) ... 585s Setting up libopenmpi-dev:arm64 (5.0.7-1) ... 585s update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode 585s Setting up mpi-default-dev (1.18) ... 585s Setting up liblammps-dev (20240207+dfsg-3build3) ... 585s Setting up python3-lammps (20240207+dfsg-3build3) ... 585s Processing triggers for man-db (2.13.0-1) ... 587s Processing triggers for install-info (7.1.1-1) ... 587s Processing triggers for libc-bin (2.41-6ubuntu1) ... 631s autopkgtest [00:16:38]: test command1: cd python/examples; python3 demo.py 631s autopkgtest [00:16:38]: test command1: [----------------------- 632s LAMMPS (7 Feb 2024 - Update 1) 632s 632s Python output: 632s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 632s Temperature from compute = 0.7683848148006238 632s Energy from equal-style variable = -5.774392400140566 632s Velocity component from atom-style variable = -0.1669643026996425 632s Volume from get_thermo = 4738.213693437576 632s Natoms from get_natoms = 4000 632s Global coords from gather_atoms = 16.651271530416228 16.790010773016775 0.19047524160174037 632s Changed x[0][0] via scatter_atoms = 17.651271530416228 632s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 632s using 1 OpenMP thread(s) per MPI task 632s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 632s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 632s 1 by 1 by 1 MPI processor grid 632s Created 4000 atoms 632s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 632s create_atoms CPU = 0.001 seconds 632s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 632s Neighbor list info ... 632s update: every = 20 steps, delay = 0 steps, check = no 632s max neighbors/atom: 2000, page size: 100000 632s master list distance cutoff = 2.8 632s ghost atom cutoff = 2.8 632s binsize = 1.4, bins = 12 12 12 632s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 632s (1) pair lj/cut, perpetual 632s attributes: half, newton on 632s pair build: half/bin/atomonly/newton 632s stencil: half/bin/3d 632s bin: standard 632s Setting up Verlet run ... 632s Unit style : lj 632s Current step : 0 632s Time step : 0.005 632s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 632s Step Temp E_pair E_mol TotEng Press 632s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 632s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 632s Loop time of 0.248484 on 1 procs for 100 steps with 4000 atoms 632s 632s Performance: 173854.586 tau/day, 402.441 timesteps/s, 1.610 Matom-step/s 632s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 632s 632s MPI task timing breakdown: 632s Section | min time | avg time | max time |%varavg| %total 632s --------------------------------------------------------------- 632s Pair | 0.2091 | 0.2091 | 0.2091 | 0.0 | 84.15 632s Neigh | 0.028537 | 0.028537 | 0.028537 | 0.0 | 11.48 632s Comm | 0.0054213 | 0.0054213 | 0.0054213 | 0.0 | 2.18 632s Output | 3.6207e-05 | 3.6207e-05 | 3.6207e-05 | 0.0 | 0.01 632s Modify | 0.004553 | 0.004553 | 0.004553 | 0.0 | 1.83 632s Other | | 0.0008327 | | | 0.34 632s 632s Nlocal: 4000 ave 4000 max 4000 min 632s Histogram: 1 0 0 0 0 0 0 0 0 0 632s Nghost: 5758 ave 5758 max 5758 min 632s Histogram: 1 0 0 0 0 0 0 0 0 0 632s Neighs: 150488 ave 150488 max 150488 min 632s Histogram: 1 0 0 0 0 0 0 0 0 0 632s 632s Total # of neighbors = 150488 632s Ave neighs/atom = 37.622 632s Neighbor list builds = 5 632s Dangerous builds not checked 632s Total wall time: 0:00:00 633s autopkgtest [00:16:40]: test command1: -----------------------] 633s autopkgtest [00:16:40]: test command1: - - - - - - - - - - results - - - - - - - - - - 633s command1 PASS 634s autopkgtest [00:16:41]: @@@@@@@@@@@@@@@@@@@@ summary 634s crack PASS 634s dipole PASS 634s ellipse PASS 634s flow PASS 634s friction PASS 634s hugo PASS 634s command1 PASS 652s nova [W] Using flock in prodstack6-arm64 652s Creating nova instance adt-questing-arm64-lammps-20250502-000606-juju-7f2275-prod-proposed-migration-environment-2-d39758d3-b7f4-4319-8dc5-35044eed3fa8 from image adt/ubuntu-questing-arm64-server-20250501.img (UUID a16a0402-3b0c-4b8f-ba85-1dd4107760ca)... 652s nova [W] Timed out waiting for a4578766-9ed9-4cd0-a6a4-9835c31e5b0f to get deleted. 652s nova [W] Using flock in prodstack6-arm64 652s Creating nova instance adt-questing-arm64-lammps-20250502-000606-juju-7f2275-prod-proposed-migration-environment-2-d39758d3-b7f4-4319-8dc5-35044eed3fa8 from image adt/ubuntu-questing-arm64-server-20250501.img (UUID a16a0402-3b0c-4b8f-ba85-1dd4107760ca)... 652s nova [W] Timed out waiting for 68956087-02a9-483b-bcbb-e52e3714fdf5 to get deleted.